Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554580 | XP_003607363.1 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554580 | sp|Q56YN3|NADK1_ARATH | 70.510 | 529 | 142 | 6 | 1 | 520 | 1 | 524 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554580 | G7JRM7 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092660 | Msa0554580 | -0.803265 | 3.785333e-49 | -8.615850e-47 |
| Msa0092680 | Msa0554580 | -0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0194570 | Msa0554580 | -0.814231 | 1.711445e-51 | -8.615850e-47 |
| Msa0227020 | Msa0554580 | 0.801651 | 8.143087e-49 | -8.615850e-47 |
| Msa0417760 | Msa0554580 | 0.802943 | 4.413613e-49 | -8.615850e-47 |
| Msa0428510 | Msa0554580 | 0.818333 | 2.070043e-52 | -8.615850e-47 |
| Msa0429270 | Msa0554580 | -0.805498 | 1.296875e-49 | -8.615850e-47 |
| Msa0257130 | Msa0554580 | -0.805081 | 1.585292e-49 | -8.615850e-47 |
| Msa0298970 | Msa0554580 | -0.800289 | 1.545367e-48 | -8.615850e-47 |
| Msa0305340 | Msa0554580 | 0.803982 | 2.688008e-49 | -8.615850e-47 |
| Msa0314790 | Msa0554580 | -0.802347 | 5.857893e-49 | -8.615850e-47 |
| Msa0554580 | Msa0561510 | -0.812658 | 3.794090e-51 | -8.615850e-47 |
| Msa0554580 | Msa0567290 | -0.813584 | 2.377627e-51 | -8.615850e-47 |
| Msa0554580 | Msa0578900 | -0.815170 | 1.060517e-51 | -8.615850e-47 |
| Msa0554580 | Msa0607600 | 0.843674 | 1.212017e-58 | -8.615850e-47 |
| Msa0554580 | Msa0610860 | -0.808410 | 3.139884e-50 | -8.615850e-47 |
| Msa0554580 | Msa0687860 | 0.839744 | 1.319154e-57 | -8.615850e-47 |
| Msa0554580 | Msa0698600 | -0.814330 | 1.627868e-51 | -8.615850e-47 |
| Msa0554580 | Msa0703720 | -0.806408 | 8.345250e-50 | -8.615850e-47 |
| Msa0554580 | Msa0703760 | -0.809497 | 1.838068e-50 | -8.615850e-47 |
| Msa0554580 | Msa0717920 | 0.816905 | 4.345088e-52 | -8.615850e-47 |
| Msa0554580 | Msa0725480 | 0.810255 | 1.262210e-50 | -8.615850e-47 |
| Msa0554580 | Msa0766100 | 0.801035 | 1.088806e-48 | -8.615850e-47 |
| Msa0554580 | Msa0813320 | 0.805462 | 1.319654e-49 | -8.615850e-47 |
| Msa0554580 | Msa1171060 | 0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0554580 | Msa1197110 | -0.811662 | 6.258575e-51 | -8.615850e-47 |
| Msa0554580 | Msa1220450 | 0.833216 | 6.056165e-56 | -8.615850e-47 |
| Msa0554580 | Msa1220460 | 0.833711 | 4.557450e-56 | -8.615850e-47 |
| Msa0554580 | Msa1220480 | 0.832701 | 8.133372e-56 | -8.615850e-47 |
| Msa0554580 | Msa1325650 | -0.819872 | 9.242393e-53 | -8.615850e-47 |
| Msa0554580 | Msa1359080 | 0.809792 | 1.588368e-50 | -8.615850e-47 |
| Msa0554580 | Msa1391360 | 0.808536 | 2.951313e-50 | -8.615850e-47 |
| Msa0554580 | Msa1401400 | 0.930188 | 2.354246e-93 | -8.615850e-47 |
| Msa0554580 | Msa1407710 | -0.812036 | 5.188811e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554580 | MtrunA17_Chr4g0039281 | 98.853 | 523 | 6 | 0 | 1 | 523 | 1 | 523 | 0.0 | 1077 |
| Msa0554580 | MtrunA17_Chr3g0125211 | 45.706 | 326 | 166 | 5 | 197 | 517 | 660 | 979 | 7.52e-88 | 290 |
| Msa0554580 | MtrunA17_Chr1g0159621 | 45.260 | 327 | 166 | 6 | 197 | 517 | 689 | 1008 | 1.13e-81 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0554580 | AT3G21070.2 | 70.510 | 529 | 142 | 6 | 1 | 520 | 1 | 524 | 0.0 | 748 |
| Msa0554580 | AT3G21070.3 | 70.510 | 529 | 142 | 6 | 1 | 520 | 79 | 602 | 0.0 | 746 |
| Msa0554580 | AT3G21070.1 | 72.521 | 484 | 121 | 3 | 44 | 520 | 1 | 479 | 0.0 | 723 |
| Msa0554580 | AT3G21070.4 | 61.468 | 327 | 112 | 6 | 1 | 318 | 79 | 400 | 1.62e-127 | 378 |
| Msa0554580 | AT1G21640.1 | 43.865 | 326 | 172 | 5 | 197 | 517 | 665 | 984 | 1.36e-81 | 274 |
| Msa0554580 | AT1G21640.2 | 42.773 | 339 | 171 | 6 | 197 | 517 | 665 | 998 | 6.17e-81 | 272 |
Find 161 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTGCTTTCTCAGAAAA+TGG | 0.204921 | 4_1:+51969991 | None:intergenic |
| ATCATCTTACCTCACAAATT+TGG | 0.209583 | 4_1:-51965927 | Msa0554580:CDS |
| TTTATTAATGTAAGAATGTA+TGG | 0.298850 | 4_1:+51964860 | None:intergenic |
| CGGCAGTACTGCATATTCTT+TGG | 0.311982 | 4_1:-51965837 | Msa0554580:CDS |
| GAGAGGAGAGAATAGGGAAT+AGG | 0.322323 | 4_1:+51970896 | None:intergenic |
| TACCAGAGCATGTGACTTTA+CGG | 0.322494 | 4_1:-51965340 | Msa0554580:CDS |
| AGAGGAGAGAATAGGGAATA+GGG | 0.324477 | 4_1:+51970897 | None:intergenic |
| CATATTGACCAAACCAAATT+CGG | 0.325935 | 4_1:-51968021 | Msa0554580:CDS |
| TTTATATAATGTGGTTTGTT+TGG | 0.329273 | 4_1:+51968937 | None:intergenic |
| GAGCATCTTGGAATCAGAAT+TGG | 0.335509 | 4_1:+51968835 | None:intergenic |
| GAAGAAGAGAGGAGAGAATA+GGG | 0.335725 | 4_1:+51970890 | None:intergenic |
| TATTCCAGATCTCTTTGAAA+TGG | 0.348895 | 4_1:-51968067 | Msa0554580:intron |
| ATATCAGTGGCCTAAAAGAT+AGG | 0.356411 | 4_1:+51965363 | None:intergenic |
| GCTTCTTCAATTACCAATCC+AGG | 0.364612 | 4_1:-51969965 | Msa0554580:CDS |
| GTGCCGTAATGTAATACTAA+TGG | 0.366497 | 4_1:+51966048 | None:intergenic |
| GATAGGGAATGTGGGCAAAT+TGG | 0.368637 | 4_1:+51965380 | None:intergenic |
| AGCATCTTGGAATCAGAATT+GGG | 0.369523 | 4_1:+51968836 | None:intergenic |
| ACGTGTCCAGGTCGATCTTC+TGG | 0.371257 | 4_1:-51967543 | Msa0554580:CDS |
| TGCCGTAATGTAATACTAAT+GGG | 0.375757 | 4_1:+51966049 | None:intergenic |
| TTCCTTCAGCAACTTTCCTA+AGG | 0.383595 | 4_1:+51969768 | None:intergenic |
| AACTGAATCCGAATTTGGTT+TGG | 0.384384 | 4_1:+51968013 | None:intergenic |
| TCCTCTCTTCTTCCATTCCA+TGG | 0.386585 | 4_1:-51970880 | Msa0554580:exon |
| TCTTCAAATCTGCAGGTTCC+GGG | 0.402559 | 4_1:-51965416 | Msa0554580:intron |
| TTTGTTCCCATGACGTCCTT+AGG | 0.405594 | 4_1:-51968868 | Msa0554580:CDS |
| CCTAAAGAAAAGGGGACAAT+AGG | 0.406636 | 4_1:+51966237 | None:intergenic |
| CTACCAAACCAATGCTTTGT+GGG | 0.412266 | 4_1:+51970949 | None:intergenic |
| GGAAGAAGAGAGGAGAGAAT+AGG | 0.414261 | 4_1:+51970889 | None:intergenic |
| GTTGACCTTGTGATAACTCT+TGG | 0.415690 | 4_1:-51967077 | Msa0554580:CDS |
| GCATTCATGAGGGTCTTCAT+TGG | 0.415841 | 4_1:-51965160 | Msa0554580:CDS |
| GAGGAGATGGCACTGTCCTA+TGG | 0.419569 | 4_1:-51967055 | Msa0554580:CDS |
| TCCAAGAGACCCTAAAGAAA+AGG | 0.423735 | 4_1:+51966227 | None:intergenic |
| AAATACCTTTCTGAGCATCT+TGG | 0.428311 | 4_1:+51968823 | None:intergenic |
| AAAATCATGCCTTGAGCATC+GGG | 0.428344 | 4_1:-51968993 | Msa0554580:CDS |
| TTTGTGAAGATATACAAAAC+GGG | 0.430052 | 4_1:-51965034 | Msa0554580:three_prime_UTR |
| ACCAGAGCATGTGACTTTAC+GGG | 0.430125 | 4_1:-51965339 | Msa0554580:CDS |
| CCAAGAGACCCTAAAGAAAA+GGG | 0.433750 | 4_1:+51966228 | None:intergenic |
| ATTCCAGATCTCTTTGAAAT+GGG | 0.437686 | 4_1:-51968066 | Msa0554580:intron |
| TATATAAAGTTGAAGCTAAC+GGG | 0.441430 | 4_1:-51968922 | Msa0554580:CDS |
| TCTGCATGGGCGTCATTTGA+TGG | 0.444185 | 4_1:-51965290 | Msa0554580:CDS |
| ATATAATGTGGTTTGTTTGG+CGG | 0.445641 | 4_1:+51968940 | None:intergenic |
| CTCATATTTACGTTTCCATT+CGG | 0.448735 | 4_1:+51969721 | None:intergenic |
| TTTGGCAGCTGGAGGATCAA+TGG | 0.451281 | 4_1:-51965819 | Msa0554580:CDS |
| CCATGACAAGCCGTAGGAAC+AGG | 0.452096 | 4_1:+51965209 | None:intergenic |
| GCATTGGTTTGGTAGTTAGT+TGG | 0.457113 | 4_1:-51970941 | Msa0554580:five_prime_UTR |
| GGCCCTTTAAAATTGATTCA+AGG | 0.464517 | 4_1:+51966071 | None:intergenic |
| ATTTGTGAAGATATACAAAA+CGG | 0.470154 | 4_1:-51965035 | Msa0554580:three_prime_UTR |
| AGAACATAAGAGAGAGTAGC+AGG | 0.470634 | 4_1:-51971007 | Msa0554580:five_prime_UTR |
| GCCCCATTAGTATTACATTA+CGG | 0.471359 | 4_1:-51966051 | Msa0554580:CDS |
| TAGCCGTCGCAAAGACCCTT+AGG | 0.472485 | 4_1:-51969784 | Msa0554580:CDS |
| ACTACCAAACCAATGCTTTG+TGG | 0.473267 | 4_1:+51970948 | None:intergenic |
| CCTCCCACAAAGCATTGGTT+TGG | 0.474521 | 4_1:-51970952 | Msa0554580:five_prime_UTR |
| TCAATATGAGCACCGTCTGT+GGG | 0.476528 | 4_1:+51968036 | None:intergenic |
| GAAAATCATGCCTTGAGCAT+CGG | 0.477900 | 4_1:-51968994 | Msa0554580:CDS |
| GCGAGATTGTCATGCTTCAC+GGG | 0.478288 | 4_1:+51965106 | None:intergenic |
| GGCACCCTGGCCTGTTCCTA+CGG | 0.479828 | 4_1:-51965219 | Msa0554580:CDS |
| AGCTTCAACTTTATATAATG+TGG | 0.480008 | 4_1:+51968928 | None:intergenic |
| TTATTGGCAGAAACTATACT+TGG | 0.480248 | 4_1:-51965071 | Msa0554580:three_prime_UTR |
| ACTGCATATTCTTTGGCAGC+TGG | 0.480334 | 4_1:-51965830 | Msa0554580:CDS |
| ACCCGTAAAGTCACATGCTC+TGG | 0.486419 | 4_1:+51965338 | None:intergenic |
| TCCTTCAGCAACTTTCCTAA+GGG | 0.493250 | 4_1:+51969769 | None:intergenic |
| AGCGAGATTGTCATGCTTCA+CGG | 0.498575 | 4_1:+51965105 | None:intergenic |
| GTCACACGTGTGCAAGGGGA+TGG | 0.499730 | 4_1:-51965881 | Msa0554580:CDS |
| CCCTCCCTCCCACAAAGCAT+TGG | 0.500064 | 4_1:-51970957 | Msa0554580:five_prime_UTR |
| AGAGAATAGGGAATAGGGAA+TGG | 0.500792 | 4_1:+51970902 | None:intergenic |
| AATTGGGGTTTCCATTCCTA+AGG | 0.501829 | 4_1:+51968852 | None:intergenic |
| TCCTTTGTCACACGTGTGCA+AGG | 0.504294 | 4_1:-51965887 | Msa0554580:CDS |
| ATATGTGGAACCACGTGTCC+AGG | 0.505262 | 4_1:-51967555 | Msa0554580:CDS |
| TTCTGTGTGCTGAAATGATT+AGG | 0.505327 | 4_1:-51967986 | Msa0554580:intron |
| GTCAATATGAGCACCGTCTG+TGG | 0.508326 | 4_1:+51968035 | None:intergenic |
| CTGCAAACCAATGCATCTCC+TGG | 0.509619 | 4_1:+51965245 | None:intergenic |
| TCCCATGACGTCCTTAGGAA+TGG | 0.510150 | 4_1:-51968863 | Msa0554580:CDS |
| CTCAAGCTGAGGCTGCCGAA+TGG | 0.510339 | 4_1:-51969736 | Msa0554580:CDS |
| GTGACGTCGCAGGCTGAGAA+TGG | 0.510604 | 4_1:-51970033 | Msa0554580:CDS |
| CCAATGCTTTGTGGGAGGGA+GGG | 0.512485 | 4_1:+51970957 | None:intergenic |
| CGTCATTTGATGGCAAAGAC+AGG | 0.513709 | 4_1:-51965280 | Msa0554580:CDS |
| TGGTTTGCAGCATGGCACCC+TGG | 0.513901 | 4_1:-51965232 | Msa0554580:CDS |
| ATTCAGAGAACTCTATAAGA+TGG | 0.515452 | 4_1:+51969932 | None:intergenic |
| AGCAGAGCGCAGTAGTAAGC+AGG | 0.517230 | 4_1:-51968249 | Msa0554580:intron |
| ATGGAAACGTAAATATGAGT+TGG | 0.518720 | 4_1:-51969717 | Msa0554580:CDS |
| AATATGAGTTGGAGCGGACA+CGG | 0.519631 | 4_1:-51969706 | Msa0554580:CDS |
| AGGATCAATGGTCCATCCTC+AGG | 0.522080 | 4_1:-51965807 | Msa0554580:intron |
| TAAGAAACTACAAGTATATG+TGG | 0.523520 | 4_1:-51967570 | Msa0554580:CDS |
| GCAGATCCTCTGCTATTGAA+TGG | 0.526265 | 4_1:+51965308 | None:intergenic |
| GTTAGCACCAGGAGATGCAT+TGG | 0.526664 | 4_1:-51965252 | Msa0554580:CDS |
| AAACTTCAATGGTGCTGCAA+AGG | 0.526729 | 4_1:-51968332 | Msa0554580:CDS |
| AAGGGGACAATAGGAGGCAC+TGG | 0.531100 | 4_1:+51966246 | None:intergenic |
| GTGATAACTCTTGGAGGAGA+TGG | 0.532119 | 4_1:-51967068 | Msa0554580:CDS |
| TTCCATTCCTAAGGACGTCA+TGG | 0.534502 | 4_1:+51968861 | None:intergenic |
| ACAAGCCGTAGGAACAGGCC+AGG | 0.537381 | 4_1:+51965214 | None:intergenic |
| CCTGTTCCTACGGCTTGTCA+TGG | 0.541901 | 4_1:-51965209 | Msa0554580:CDS |
| GACCTTGTGATAACTCTTGG+AGG | 0.543147 | 4_1:-51967074 | Msa0554580:CDS |
| AGGAGATGGCACTGTCCTAT+GGG | 0.543589 | 4_1:-51967054 | Msa0554580:intron |
| AGATGCATTGGTTTGCAGCA+TGG | 0.544167 | 4_1:-51965240 | Msa0554580:CDS |
| GGCCTAAAAGATAGGGAATG+TGG | 0.546385 | 4_1:+51965371 | None:intergenic |
| AGTCTGAAGAATGTTATTCA+AGG | 0.548385 | 4_1:-51968898 | Msa0554580:CDS |
| GAAGAATGTTATTCAAGGAA+TGG | 0.548576 | 4_1:-51968893 | Msa0554580:CDS |
| ACCAATGCTTTGTGGGAGGG+AGG | 0.548749 | 4_1:+51970956 | None:intergenic |
| TTATCATTCTCAGATGGTTG+AGG | 0.555430 | 4_1:-51967598 | Msa0554580:intron |
| ATGCTTTGTGGGAGGGAGGG+AGG | 0.556756 | 4_1:+51970960 | None:intergenic |
| TATCAGTGGCCTAAAAGATA+GGG | 0.556872 | 4_1:+51965364 | None:intergenic |
| TCCATTCCTAAGGACGTCAT+GGG | 0.556880 | 4_1:+51968862 | None:intergenic |
| AAAGAAAAGGGGACAATAGG+AGG | 0.560184 | 4_1:+51966240 | None:intergenic |
| ACTTTAACTTTGTAGAAACA+TGG | 0.561034 | 4_1:-51967508 | Msa0554580:CDS |
| CAAGATCAGCCCGATGCTCA+AGG | 0.561911 | 4_1:+51968984 | None:intergenic |
| CTTCTTCAATTACCAATCCA+GGG | 0.562191 | 4_1:-51969964 | Msa0554580:CDS |
| TGTGAGGAGGTGCCATGGAA+TGG | 0.566364 | 4_1:+51970868 | None:intergenic |
| GCCATGGAATGGAAGAAGAG+AGG | 0.566431 | 4_1:+51970879 | None:intergenic |
| TTCAAGAAAGTACCTGAGGA+TGG | 0.571238 | 4_1:+51965795 | None:intergenic |
| CCTTTGTCACACGTGTGCAA+GGG | 0.572743 | 4_1:-51965886 | Msa0554580:CDS |
| GCATATTCTTTGGCAGCTGG+AGG | 0.576402 | 4_1:-51965827 | Msa0554580:CDS |
| AAATTCGAGTGTGACGTCGC+AGG | 0.576930 | 4_1:-51970043 | Msa0554580:CDS |
| CAAAGAATATGCAGTACTGC+CGG | 0.577407 | 4_1:+51965838 | None:intergenic |
| CAAACCAATGCTTTGTGGGA+GGG | 0.577595 | 4_1:+51970953 | None:intergenic |
| CCCTTGCACACGTGTGACAA+AGG | 0.578224 | 4_1:+51965886 | None:intergenic |
| GTATAACATGACATATCAAA+CGG | 0.579333 | 4_1:+51966026 | None:intergenic |
| TTATATAAAGTTGAAGCTAA+CGG | 0.582757 | 4_1:-51968923 | Msa0554580:CDS |
| TGATTCCAAGATGCTCAGAA+AGG | 0.584205 | 4_1:-51968828 | Msa0554580:intron |
| CTTCTTGCACAGCATTCATG+AGG | 0.584282 | 4_1:-51965171 | Msa0554580:CDS |
| CTTTGTCACACGTGTGCAAG+GGG | 0.585437 | 4_1:-51965885 | Msa0554580:CDS |
| GACAGGAAACAGTTAGCACC+AGG | 0.587740 | 4_1:-51965263 | Msa0554580:CDS |
| TAAGATGGTCATCAGAACCC+TGG | 0.595252 | 4_1:+51969947 | None:intergenic |
| AGCAGGAGTAGTATATTGCA+AGG | 0.595320 | 4_1:-51970990 | Msa0554580:five_prime_UTR |
| TTTCCTAAGGGTCTTTGCGA+CGG | 0.596647 | 4_1:+51969781 | None:intergenic |
| TTTGTAGAAACATGGAGTGA+TGG | 0.596829 | 4_1:-51967500 | Msa0554580:intron |
| AAAAGCTGCTGCTCAAGCTG+AGG | 0.596980 | 4_1:-51969747 | Msa0554580:CDS |
| CAGACAGCATCTATGTTCAA+AGG | 0.597231 | 4_1:-51966270 | Msa0554580:CDS |
| TGGTCATCAGAACCCTGGAT+TGG | 0.600554 | 4_1:+51969952 | None:intergenic |
| ACTCCTCCAGAAGATCGACC+TGG | 0.600736 | 4_1:+51967537 | None:intergenic |
| GCCTAAAAGATAGGGAATGT+GGG | 0.606323 | 4_1:+51965372 | None:intergenic |
| CTTACTACTGCGCTCTGCTG+TGG | 0.613186 | 4_1:+51968253 | None:intergenic |
| ACCCTTAGGAAAGTTGCTGA+AGG | 0.613952 | 4_1:-51969770 | Msa0554580:CDS |
| TTCTCACAAGACAAAGACAA+TGG | 0.614110 | 4_1:+51971044 | None:intergenic |
| CAAATACCATTCAATAGCAG+AGG | 0.614625 | 4_1:-51965314 | Msa0554580:CDS |
| AACGTAAATATGAGTTGGAG+CGG | 0.620635 | 4_1:-51969712 | Msa0554580:CDS |
| CAAGCCGTAGGAACAGGCCA+GGG | 0.621041 | 4_1:+51965215 | None:intergenic |
| TCAATAGCAGAGGATCTGCA+TGG | 0.622946 | 4_1:-51965304 | Msa0554580:CDS |
| CCAAACCAATGCTTTGTGGG+AGG | 0.624213 | 4_1:+51970952 | None:intergenic |
| GTGGGAGAATTGAGCTTGTG+AGG | 0.625456 | 4_1:+51970852 | None:intergenic |
| CTCCTCCAAGAGTTATCACA+AGG | 0.626125 | 4_1:+51967072 | None:intergenic |
| TTCTTGCACAGCATTCATGA+GGG | 0.628470 | 4_1:-51965170 | Msa0554580:CDS |
| GCATCTTGGAATCAGAATTG+GGG | 0.632152 | 4_1:+51968837 | None:intergenic |
| CAATAGCAGAGGATCTGCAT+GGG | 0.633440 | 4_1:-51965303 | Msa0554580:CDS |
| AGTAACATTCCAAATTTGTG+AGG | 0.633691 | 4_1:+51965918 | None:intergenic |
| GAGCTTGTGAGGAGGTGCCA+TGG | 0.634948 | 4_1:+51970863 | None:intergenic |
| CAATATGAGCACCGTCTGTG+GGG | 0.637061 | 4_1:+51968037 | None:intergenic |
| TCACAAGCTCAATTCTCCCA+CGG | 0.637477 | 4_1:-51970850 | Msa0554580:intron |
| ACATGCTCTGGTAATATCAG+TGG | 0.641766 | 4_1:+51965350 | None:intergenic |
| ATCTATACTTGTTCTAAACG+AGG | 0.643745 | 4_1:-51965969 | Msa0554580:CDS |
| TGTCCAGGTCGATCTTCTGG+AGG | 0.648734 | 4_1:-51967540 | Msa0554580:CDS |
| TTGTGAAGATATACAAAACG+GGG | 0.656277 | 4_1:-51965033 | Msa0554580:three_prime_UTR |
| AACGAGGTTACTATTGATCG+TGG | 0.656515 | 4_1:-51965953 | Msa0554580:CDS |
| AATATGAGCACCGTCTGTGG+GGG | 0.658209 | 4_1:+51968038 | None:intergenic |
| GAATCTCCATGACAAGCCGT+AGG | 0.661516 | 4_1:+51965203 | None:intergenic |
| GCCGTAATGTAATACTAATG+GGG | 0.664160 | 4_1:+51966050 | None:intergenic |
| AGAAGATCGACCTGGACACG+TGG | 0.664253 | 4_1:+51967545 | None:intergenic |
| CAAGAGACCCTAAAGAAAAG+GGG | 0.665932 | 4_1:+51966229 | None:intergenic |
| CGAGATTGTCATGCTTCACG+GGG | 0.669838 | 4_1:+51965107 | None:intergenic |
| ATTGGCGTAAACAAAATACC+CGG | 0.685864 | 4_1:+51965398 | None:intergenic |
| GGAGAATTGAGCTTGTGAGG+AGG | 0.732507 | 4_1:+51970855 | None:intergenic |
| TGTGAAGATATACAAAACGG+GGG | 0.736502 | 4_1:-51965032 | Msa0554580:three_prime_UTR |
| AATCTGCAGATCGAAAACAA+AGG | 0.765104 | 4_1:-51969683 | Msa0554580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAAAATTTGAAAATAA+TGG | - | chr4_1:51965406-51965425 | Msa0554580:intron | 10.0% |
| !! | TTTCAAAATTTGAAAATAAT+GGG | - | chr4_1:51965407-51965426 | Msa0554580:intron | 10.0% |
| !! | ATTACTATATAATATTGTAT+CGG | + | chr4_1:51967374-51967393 | None:intergenic | 10.0% |
| !! | AATCATCATAAAATTAAAAA+AGG | + | chr4_1:51969451-51969470 | None:intergenic | 10.0% |
| !!! | AACACTTGATTTATTTTTTT+TGG | + | chr4_1:51965680-51965699 | None:intergenic | 15.0% |
| !! | AAATGATTGAAATGAATAAA+CGG | + | chr4_1:51966439-51966458 | None:intergenic | 15.0% |
| !! | ATTAAAGATAAATTGCTTAT+AGG | - | chr4_1:51966501-51966520 | Msa0554580:intron | 15.0% |
| !! | AAAATAAACAAAATAGTGAA+TGG | - | chr4_1:51968637-51968656 | Msa0554580:intron | 15.0% |
| !!! | TTTTAAAATATCCTATTGAA+TGG | - | chr4_1:51968898-51968917 | Msa0554580:CDS | 15.0% |
| !!! | TAATTTTGTCATCTAAAATA+TGG | - | chr4_1:51968950-51968969 | Msa0554580:CDS | 15.0% |
| !! | TAAAAAAAAATATACGTCTA+AGG | + | chr4_1:51970349-51970368 | None:intergenic | 15.0% |
| !! | TTTATTAATGTAAGAATGTA+TGG | + | chr4_1:51971060-51971079 | None:intergenic | 15.0% |
| !!! | TTTTTTTGGTTTTGAAAACT+CGG | + | chr4_1:51965666-51965685 | None:intergenic | 20.0% |
| !! | TTTCACAATATGTTAGTATT+AGG | - | chr4_1:51965804-51965823 | Msa0554580:intron | 20.0% |
| !! | ATTAAAAAGAAAAAATCGAC+CGG | + | chr4_1:51966411-51966430 | None:intergenic | 20.0% |
| !! | AAGCAATTTATCTTTAATAC+AGG | + | chr4_1:51966499-51966518 | None:intergenic | 20.0% |
| !!! | GAAGAAATGAAAGATTTTAA+CGG | + | chr4_1:51966687-51966706 | None:intergenic | 20.0% |
| !! | TTGAAAAATTCAACAGAAAA+AGG | + | chr4_1:51966755-51966774 | None:intergenic | 20.0% |
| !!! | TTTATATAATGTGGTTTGTT+TGG | + | chr4_1:51966983-51967002 | None:intergenic | 20.0% |
| !! | TTATATAAAGTTGAAGCTAA+CGG | - | chr4_1:51966994-51967013 | Msa0554580:intron | 20.0% |
| !!! | AATATTTAAGAGTACCAATA+GGG | + | chr4_1:51967179-51967198 | None:intergenic | 20.0% |
| !!! | AAATATTTAAGAGTACCAAT+AGG | + | chr4_1:51967180-51967199 | None:intergenic | 20.0% |
| !! | TTATACTAAAGACAAATACT+TGG | + | chr4_1:51968220-51968239 | None:intergenic | 20.0% |
| !! | AAAAAATACCAATTAACCAA+GGG | + | chr4_1:51968295-51968314 | None:intergenic | 20.0% |
| !! | AAAAAAATACCAATTAACCA+AGG | + | chr4_1:51968296-51968315 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATCATTCTCAGA+TGG | - | chr4_1:51968313-51968332 | Msa0554580:CDS | 20.0% |
| !! | CAAATATTTGATGTCATAAA+AGG | - | chr4_1:51968448-51968467 | Msa0554580:intron | 20.0% |
| !! | TATGCATTGAGATAAATATA+TGG | - | chr4_1:51969176-51969195 | Msa0554580:intron | 20.0% |
| !! | AGATAAATATATGGTAGATT+AGG | - | chr4_1:51969185-51969204 | Msa0554580:intron | 20.0% |
| !! | AATTATGTATATGCATGATT+CGG | + | chr4_1:51969229-51969248 | None:intergenic | 20.0% |
| !!! | GAAGTAACATTTTTAATGTT+GGG | - | chr4_1:51969418-51969437 | Msa0554580:intron | 20.0% |
| !!! | TTTAATTTTATGATGATTGC+TGG | - | chr4_1:51969453-51969472 | Msa0554580:intron | 20.0% |
| !! | TCAAAATATATCTTTGTCTT+TGG | - | chr4_1:51969501-51969520 | Msa0554580:intron | 20.0% |
| !! | ATATCACAAAGCAATATATT+AGG | + | chr4_1:51969597-51969616 | None:intergenic | 20.0% |
| !! | ATATCTGTTTACATTTCTAT+TGG | - | chr4_1:51969777-51969796 | Msa0554580:CDS | 20.0% |
| !!! | TTAATTTTATCTACAACATC+CGG | - | chr4_1:51970060-51970079 | Msa0554580:intron | 20.0% |
| !!! | TTACTCATAAGATTTTAACA+TGG | - | chr4_1:51970366-51970385 | Msa0554580:intron | 20.0% |
| !! | ATTTGTGAAGATATACAAAA+CGG | - | chr4_1:51970882-51970901 | Msa0554580:exon | 20.0% |
| ! | TTATTCAACTATTTCCTGTT+AGG | - | chr4_1:51965130-51965149 | Msa0554580:CDS | 25.0% |
| ! | TATTCAACTATTTCCTGTTA+GGG | - | chr4_1:51965131-51965150 | Msa0554580:CDS | 25.0% |
| ! | TAATAAAGAAAAACCCTAAC+AGG | + | chr4_1:51965147-51965166 | None:intergenic | 25.0% |
| ! | TAAATTTGAAAAAAATGGGC+AGG | - | chr4_1:51965254-51965273 | Msa0554580:CDS | 25.0% |
| ! | GTAGAATTTATCTGTGTTTA+TGG | - | chr4_1:51965349-51965368 | Msa0554580:CDS | 25.0% |
| ! | AAAATAAATCAAGTGTTCTG+TGG | - | chr4_1:51965683-51965702 | Msa0554580:intron | 25.0% |
| ! | AAATAAATCAAGTGTTCTGT+GGG | - | chr4_1:51965684-51965703 | Msa0554580:intron | 25.0% |
| !! | TAGGTTACAAGTTTGTATTT+TGG | - | chr4_1:51965823-51965842 | Msa0554580:CDS | 25.0% |
| ! | AGCTTCAACTTTATATAATG+TGG | + | chr4_1:51966992-51967011 | None:intergenic | 25.0% |
| ! | TATATAAAGTTGAAGCTAAC+GGG | - | chr4_1:51966995-51967014 | Msa0554580:intron | 25.0% |
| !! | TAACATATTTTGCTTCGATA+AGG | + | chr4_1:51967128-51967147 | None:intergenic | 25.0% |
| !!! | CGATTGTTTTTAATGAGATA+AGG | + | chr4_1:51967318-51967337 | None:intergenic | 25.0% |
| ! | AAATATAGCTAATTACCATG+AGG | + | chr4_1:51967486-51967505 | None:intergenic | 25.0% |
| !! | AGGTATCTCTTTTATTATTG+AGG | - | chr4_1:51967688-51967707 | Msa0554580:intron | 25.0% |
| !! | TATCTCTTTTATTATTGAGG+AGG | - | chr4_1:51967691-51967710 | Msa0554580:intron | 25.0% |
| !!! | ATTTTAACTGAATCCGAATT+TGG | + | chr4_1:51967912-51967931 | None:intergenic | 25.0% |
| ! | AAAGGAATAAAACTTGACTT+TGG | + | chr4_1:51967998-51968017 | None:intergenic | 25.0% |
| ! | AGCATCATAACATAAGTAAA+AGG | + | chr4_1:51968016-51968035 | None:intergenic | 25.0% |
| !! | AAATAATGGAAGATGTGTAA+TGG | - | chr4_1:51968060-51968079 | Msa0554580:CDS | 25.0% |
| ! | TAAGAAACTACAAGTATATG+TGG | - | chr4_1:51968347-51968366 | Msa0554580:intron | 25.0% |
| !! | ACTTTAACTTTGTAGAAACA+TGG | - | chr4_1:51968409-51968428 | Msa0554580:intron | 25.0% |
| !!! | TTTTTCTAGTGCTATATTTG+TGG | - | chr4_1:51968559-51968578 | Msa0554580:intron | 25.0% |
| ! | AGTAAACAGTAAACTTTCTT+TGG | + | chr4_1:51968663-51968682 | None:intergenic | 25.0% |
| ! | TCATTATGTTAAAACAGACA+AGG | + | chr4_1:51968686-51968705 | None:intergenic | 25.0% |
| ! | AGTTAACTATCTGATTATAG+TGG | - | chr4_1:51968748-51968767 | Msa0554580:intron | 25.0% |
| ! | ATGCACATAAACAATTACAA+CGG | + | chr4_1:51968774-51968793 | None:intergenic | 25.0% |
| !!! | CAATTTTTTGCTTGTAGATA+AGG | - | chr4_1:51968794-51968813 | Msa0554580:intron | 25.0% |
| !! | TTGTAGATAAGGAAATTTTG+AGG | - | chr4_1:51968805-51968824 | Msa0554580:intron | 25.0% |
| ! | TAAAAAGAGTTAGTTACTTG+TGG | + | chr4_1:51969043-51969062 | None:intergenic | 25.0% |
| ! | GAAATGTACATAACCTTAAA+AGG | - | chr4_1:51969375-51969394 | Msa0554580:intron | 25.0% |
| !! | TCATATCAAATGTCCTTTTA+AGG | + | chr4_1:51969391-51969410 | None:intergenic | 25.0% |
| !! | GGAAGTAACATTTTTAATGT+TGG | - | chr4_1:51969417-51969436 | Msa0554580:intron | 25.0% |
| ! | GAGTATTCATTGTTAAACTT+TGG | - | chr4_1:51969523-51969542 | Msa0554580:intron | 25.0% |
| ! | TTTACTTTACATTACTCAAC+CGG | - | chr4_1:51969567-51969586 | Msa0554580:intron | 25.0% |
| ! | AAGCAATATATTAGGATAAC+CGG | + | chr4_1:51969589-51969608 | None:intergenic | 25.0% |
| !! | TTGTAATTTTCACTATCTGA+AGG | + | chr4_1:51969820-51969839 | None:intergenic | 25.0% |
| !! | TGCCTTGAATCAATTTTAAA+GGG | - | chr4_1:51969844-51969863 | Msa0554580:intron | 25.0% |
| ! | GTATAACATGACATATCAAA+CGG | + | chr4_1:51969894-51969913 | None:intergenic | 25.0% |
| !!! | GTATCATTACAAGTTTTTTC+TGG | - | chr4_1:51970256-51970275 | Msa0554580:intron | 25.0% |
| !!! | AGATTTTAACATGGAAATTC+TGG | - | chr4_1:51970375-51970394 | Msa0554580:intron | 25.0% |
| ! | ATTATGACACTAAAACTGTA+AGG | + | chr4_1:51970428-51970447 | None:intergenic | 25.0% |
| ! | TTTGTGAAGATATACAAAAC+GGG | - | chr4_1:51970883-51970902 | Msa0554580:exon | 25.0% |
| !!! | TTTTAAGTTACAATATCACG+CGG | + | chr4_1:51971028-51971047 | None:intergenic | 25.0% |
| GAATTAAGAAGAATTACCGT+GGG | + | chr4_1:51965086-51965105 | None:intergenic | 30.0% | |
| AGAATTAAGAAGAATTACCG+TGG | + | chr4_1:51965087-51965106 | None:intergenic | 30.0% | |
| ! | CTAGGATTTATCTGTGTTTT+TGG | - | chr4_1:51965190-51965209 | Msa0554580:CDS | 30.0% |
| CAAAAGCTAATAAGCAGTTA+GGG | + | chr4_1:51965317-51965336 | None:intergenic | 30.0% | |
| ACAAAAGCTAATAAGCAGTT+AGG | + | chr4_1:51965318-51965337 | None:intergenic | 30.0% | |
| !! | TTAGCTTTTGTTAATTACCC+TGG | - | chr4_1:51965327-51965346 | Msa0554580:CDS | 30.0% |
| AACACAGATAAATTCTACCA+GGG | + | chr4_1:51965347-51965366 | None:intergenic | 30.0% | |
| AAACACAGATAAATTCTACC+AGG | + | chr4_1:51965348-51965367 | None:intergenic | 30.0% | |
| TCATACCCTATAAGAAGTTA+GGG | + | chr4_1:51965475-51965494 | None:intergenic | 30.0% | |
| ATCATACCCTATAAGAAGTT+AGG | + | chr4_1:51965476-51965495 | None:intergenic | 30.0% | |
| !! | TCCATAGCTTTGACTTTAAT+TGG | - | chr4_1:51965582-51965601 | Msa0554580:intron | 30.0% |
| !! | CCATAGCTTTGACTTTAATT+GGG | - | chr4_1:51965583-51965602 | Msa0554580:intron | 30.0% |
| !! | TCTTAGAGTGTGTTACTTAT+AGG | - | chr4_1:51965717-51965736 | Msa0554580:intron | 30.0% |
| ATTCAGAGAACTCTATAAGA+TGG | + | chr4_1:51965988-51966007 | None:intergenic | 30.0% | |
| AGGAGTTTCAAGACAAAATA+AGG | + | chr4_1:51966108-51966127 | None:intergenic | 30.0% | |
| CTCATATTTACGTTTCCATT+CGG | + | chr4_1:51966199-51966218 | None:intergenic | 30.0% | |
| ATGGAAACGTAAATATGAGT+TGG | - | chr4_1:51966200-51966219 | Msa0554580:intron | 30.0% | |
| TACAAAATCAATCATCGAAG+TGG | + | chr4_1:51966280-51966299 | None:intergenic | 30.0% | |
| !! | GCTATTAAATTGTCGATTTC+CGG | - | chr4_1:51966389-51966408 | Msa0554580:intron | 30.0% |
| ! | ATCGTCTGAAAACGATTTTA+TGG | - | chr4_1:51966627-51966646 | Msa0554580:intron | 30.0% |
| ! | TTGTCACGATCTTATCTTTT+AGG | - | chr4_1:51966789-51966808 | Msa0554580:intron | 30.0% |
| TAGATGGTAGATCAATATTC+AGG | + | chr4_1:51966826-51966845 | None:intergenic | 30.0% | |
| AAACACATTAGCAGTTTAGA+TGG | + | chr4_1:51966842-51966861 | None:intergenic | 30.0% | |
| AGTTTATAATTTCTACTCCC+TGG | - | chr4_1:51966885-51966904 | Msa0554580:intron | 30.0% | |
| !! | ATATAATGTGGTTTGTTTGG+CGG | + | chr4_1:51966980-51966999 | None:intergenic | 30.0% |
| AGTCTGAAGAATGTTATTCA+AGG | - | chr4_1:51967019-51967038 | Msa0554580:intron | 30.0% | |
| GAAGAATGTTATTCAAGGAA+TGG | - | chr4_1:51967024-51967043 | Msa0554580:intron | 30.0% | |
| AAACAATCGAGTGATATAAG+TGG | - | chr4_1:51967329-51967348 | Msa0554580:intron | 30.0% | |
| !!! | GATATGGATTAGTTTTTGGT+AGG | + | chr4_1:51967464-51967483 | None:intergenic | 30.0% |
| !!! | TGAGGATATGGATTAGTTTT+TGG | + | chr4_1:51967468-51967487 | None:intergenic | 30.0% |
| AAAACTAATCCATATCCTCA+TGG | - | chr4_1:51967468-51967487 | Msa0554580:intron | 30.0% | |
| ! | AGGCTTCTTTTAAACTTCAA+TGG | - | chr4_1:51967574-51967593 | Msa0554580:CDS | 30.0% |
| ! | TATTCCAGATCTCTTTGAAA+TGG | - | chr4_1:51967850-51967869 | Msa0554580:intron | 30.0% |
| !! | ATTCCAGATCTCTTTGAAAT+GGG | - | chr4_1:51967851-51967870 | Msa0554580:intron | 30.0% |
| CATATTGACCAAACCAAATT+CGG | - | chr4_1:51967896-51967915 | Msa0554580:intron | 30.0% | |
| !! | ATTATTTTGCGAAGAGTCTA+AGG | + | chr4_1:51968047-51968066 | None:intergenic | 30.0% |
| TTAGACTCTTCGCAAAATAA+TGG | - | chr4_1:51968046-51968065 | Msa0554580:CDS | 30.0% | |
| AAATACTTGGAAGGATACAA+AGG | + | chr4_1:51968207-51968226 | None:intergenic | 30.0% | |
| ACTAAAGACAAATACTTGGA+AGG | + | chr4_1:51968216-51968235 | None:intergenic | 30.0% | |
| ! | ACTAGAAAAAAAAGCTCTAG+TGG | + | chr4_1:51968549-51968568 | None:intergenic | 30.0% |
| ATAGAGTATATATCGACACA+AGG | + | chr4_1:51968603-51968622 | None:intergenic | 30.0% | |
| AAACAATTTCACATACCCAT+AGG | + | chr4_1:51968881-51968900 | None:intergenic | 30.0% | |
| TTAGACTATTGCCATTCAAT+AGG | + | chr4_1:51968912-51968931 | None:intergenic | 30.0% | |
| AATTTAAGAGTGAACAAGAG+AGG | - | chr4_1:51968999-51969018 | Msa0554580:intron | 30.0% | |
| TAGATTAGGAACCATGTTAA+AGG | - | chr4_1:51969199-51969218 | Msa0554580:intron | 30.0% | |
| CTGAAAACTATTTGATTCCT+GGG | - | chr4_1:51969292-51969311 | Msa0554580:intron | 30.0% | |
| AAAGGACATTTGATATGAGA+TGG | - | chr4_1:51969393-51969412 | Msa0554580:intron | 30.0% | |
| !!! | AGATATATTTTGACCAGAGA+TGG | + | chr4_1:51969494-51969513 | None:intergenic | 30.0% |
| ATACAATTATGCGAAGTTGA+AGG | + | chr4_1:51969736-51969755 | None:intergenic | 30.0% | |
| ! | AATTTTCACTATCTGAAGGA+AGG | + | chr4_1:51969816-51969835 | None:intergenic | 30.0% |
| ! | GTGCCTTGAATCAATTTTAA+AGG | - | chr4_1:51969843-51969862 | Msa0554580:intron | 30.0% |
| TGCCGTAATGTAATACTAAT+GGG | + | chr4_1:51969871-51969890 | None:intergenic | 30.0% | |
| ! | ATCTATACTTGTTCTAAACG+AGG | - | chr4_1:51969948-51969967 | Msa0554580:CDS | 30.0% |
| ATCATCTTACCTCACAAATT+TGG | - | chr4_1:51969990-51970009 | Msa0554580:CDS | 30.0% | |
| AGTAACATTCCAAATTTGTG+AGG | + | chr4_1:51970002-51970021 | None:intergenic | 30.0% | |
| TTAACAATGAATGTCTCGAT+CGG | - | chr4_1:51970196-51970215 | Msa0554580:intron | 30.0% | |
| !!! | TCGCTGTCTTTCTTTTTTAT+TGG | - | chr4_1:51970830-51970849 | Msa0554580:intron | 30.0% |
| TTATTGGCAGAAACTATACT+TGG | - | chr4_1:51970846-51970865 | Msa0554580:intron | 30.0% | |
| TTGTGAAGATATACAAAACG+GGG | - | chr4_1:51970884-51970903 | Msa0554580:five_prime_UTR | 30.0% | |
| ! | TACATTTTCATCATCATCGA+TGG | + | chr4_1:51970996-51971015 | None:intergenic | 30.0% |
| TTCTCACAAGACAAAGACAA+TGG | + | chr4_1:51964876-51964895 | None:intergenic | 35.0% | |
| GTTATGTTAATTACCCTGCT+AGG | - | chr4_1:51965172-51965191 | Msa0554580:CDS | 35.0% | |
| AACACAGATAAATCCTAGCA+GGG | + | chr4_1:51965188-51965207 | None:intergenic | 35.0% | |
| AAACACAGATAAATCCTAGC+AGG | + | chr4_1:51965189-51965208 | None:intergenic | 35.0% | |
| TTGACTCCCTAACTTCTTAT+AGG | - | chr4_1:51965466-51965485 | Msa0554580:intron | 35.0% | |
| TGACTCCCTAACTTCTTATA+GGG | - | chr4_1:51965467-51965486 | Msa0554580:intron | 35.0% | |
| ! | ATGGACTATCCCACAAAAAT+TGG | + | chr4_1:51965567-51965586 | None:intergenic | 35.0% |
| CCCAATTAAAGTCAAAGCTA+TGG | + | chr4_1:51965586-51965605 | None:intergenic | 35.0% | |
| !!! | GGTTTTGAAAACTCGGTATT+CGG | + | chr4_1:51965659-51965678 | None:intergenic | 35.0% |
| ! | GGTTTTTCTGATTTCCTTCA+TGG | - | chr4_1:51965844-51965863 | Msa0554580:CDS | 35.0% |
| CTTCTTCAATTACCAATCCA+GGG | - | chr4_1:51965953-51965972 | Msa0554580:CDS | 35.0% | |
| ! | AACGTAAATATGAGTTGGAG+CGG | - | chr4_1:51966205-51966224 | Msa0554580:intron | 35.0% |
| AATCTGCAGATCGAAAACAA+AGG | - | chr4_1:51966234-51966253 | Msa0554580:CDS | 35.0% | |
| TCTCTTACAGTCAATATTGC+AGG | - | chr4_1:51966316-51966335 | Msa0554580:intron | 35.0% | |
| AGTCAATATTGCAGGAGAAA+CGG | - | chr4_1:51966324-51966343 | Msa0554580:intron | 35.0% | |
| ATCGACAATTTAATAGCGAG+CGG | + | chr4_1:51966386-51966405 | None:intergenic | 35.0% | |
| AGTTCTATTTCATCGTCTTG+CGG | - | chr4_1:51966601-51966620 | Msa0554580:intron | 35.0% | |
| TCCTGTAGTAAAAACATCCA+GGG | + | chr4_1:51966905-51966924 | None:intergenic | 35.0% | |
| TTCCTGTAGTAAAAACATCC+AGG | + | chr4_1:51966906-51966925 | None:intergenic | 35.0% | |
| AGCATCTTGGAATCAGAATT+GGG | + | chr4_1:51967084-51967103 | None:intergenic | 35.0% | |
| AAATACCTTTCTGAGCATCT+TGG | + | chr4_1:51967097-51967116 | None:intergenic | 35.0% | |
| ! | ATGATCAATTTTGTTGCAGC+AGG | - | chr4_1:51967150-51967169 | Msa0554580:intron | 35.0% |
| ! | TTTTCTCTGATGTACATGTG+TGG | - | chr4_1:51967198-51967217 | Msa0554580:intron | 35.0% |
| TGCGACAGACATCAATAAAA+GGG | + | chr4_1:51967239-51967258 | None:intergenic | 35.0% | |
| ATGCGACAGACATCAATAAA+AGG | + | chr4_1:51967240-51967259 | None:intergenic | 35.0% | |
| !!! | TGGATTAGTTTTTGGTAGGA+CGG | + | chr4_1:51967460-51967479 | None:intergenic | 35.0% |
| AGCTAATTACCATGAGGATA+TGG | + | chr4_1:51967480-51967499 | None:intergenic | 35.0% | |
| CAGGTACAGTAATGTTGAAT+TGG | + | chr4_1:51967538-51967557 | None:intergenic | 35.0% | |
| TGTACCTGACTTATTTACTG+AGG | - | chr4_1:51967550-51967569 | Msa0554580:CDS | 35.0% | |
| !! | GACATTGTCTCTTTTGAAAG+AGG | - | chr4_1:51967633-51967652 | Msa0554580:intron | 35.0% |
| ! | ACGAGGACAAACTTTAAGAA+GGG | + | chr4_1:51967768-51967787 | None:intergenic | 35.0% |
| GAAAATATAAAGCTAGCACG+AGG | + | chr4_1:51967785-51967804 | None:intergenic | 35.0% | |
| AACTGAATCCGAATTTGGTT+TGG | + | chr4_1:51967907-51967926 | None:intergenic | 35.0% | |
| TTCTGTGTGCTGAAATGATT+AGG | - | chr4_1:51967931-51967950 | Msa0554580:intron | 35.0% | |
| TTATCATTCTCAGATGGTTG+AGG | - | chr4_1:51968319-51968338 | Msa0554580:CDS | 35.0% | |
| TTTGTAGAAACATGGAGTGA+TGG | - | chr4_1:51968417-51968436 | Msa0554580:intron | 35.0% | |
| TGGCAATAGTCTAACTTTCT+AGG | - | chr4_1:51968918-51968937 | Msa0554580:CDS | 35.0% | |
| ! | ACAGTGGTTTGGATAAGTAA+CGG | + | chr4_1:51969071-51969090 | None:intergenic | 35.0% |
| ! | AAAAGTGTAACCTTCAACAG+TGG | + | chr4_1:51969087-51969106 | None:intergenic | 35.0% |
| TTCACAGTAAAACAGATCTG+CGG | + | chr4_1:51969115-51969134 | None:intergenic | 35.0% | |
| GCTGAAAACTATTTGATTCC+TGG | - | chr4_1:51969291-51969310 | Msa0554580:intron | 35.0% | |
| GTAAACTACTGTAGTAGACT+TGG | + | chr4_1:51969552-51969571 | None:intergenic | 35.0% | |
| ! | CTATTGTCCCCTTTTCTTTA+GGG | - | chr4_1:51969681-51969700 | Msa0554580:intron | 35.0% |
| !! | GGCCCTTTAAAATTGATTCA+AGG | + | chr4_1:51969849-51969868 | None:intergenic | 35.0% |
| GCCCCATTAGTATTACATTA+CGG | - | chr4_1:51969866-51969885 | Msa0554580:intron | 35.0% | |
| GCCGTAATGTAATACTAATG+GGG | + | chr4_1:51969870-51969889 | None:intergenic | 35.0% | |
| GTGCCGTAATGTAATACTAA+TGG | + | chr4_1:51969872-51969891 | None:intergenic | 35.0% | |
| ACATGTGAACAGCAAAACAA+CGG | + | chr4_1:51970285-51970304 | None:intergenic | 35.0% | |
| !!! | GTTTTGCTGTTCACATGTTA+TGG | - | chr4_1:51970287-51970306 | Msa0554580:intron | 35.0% |
| TCTTTATGACCTTGTGTTAC+TGG | - | chr4_1:51970317-51970336 | Msa0554580:intron | 35.0% | |
| ATTGGCGTAAACAAAATACC+CGG | + | chr4_1:51970522-51970541 | None:intergenic | 35.0% | |
| TATCAGTGGCCTAAAAGATA+GGG | + | chr4_1:51970556-51970575 | None:intergenic | 35.0% | |
| ATATCAGTGGCCTAAAAGAT+AGG | + | chr4_1:51970557-51970576 | None:intergenic | 35.0% | |
| CAAATACCATTCAATAGCAG+AGG | - | chr4_1:51970603-51970622 | Msa0554580:intron | 35.0% | |
| TGTGAAGATATACAAAACGG+GGG | - | chr4_1:51970885-51970904 | Msa0554580:five_prime_UTR | 35.0% | |
| AGAACATAAGAGAGAGTAGC+AGG | - | chr4_1:51964910-51964929 | Msa0554580:three_prime_UTR | 40.0% | |
| AGCAGGAGTAGTATATTGCA+AGG | - | chr4_1:51964927-51964946 | Msa0554580:three_prime_UTR | 40.0% | |
| CTACCAAACCAATGCTTTGT+GGG | + | chr4_1:51964971-51964990 | None:intergenic | 40.0% | |
| ACTACCAAACCAATGCTTTG+TGG | + | chr4_1:51964972-51964991 | None:intergenic | 40.0% | |
| !! | GCATTGGTTTGGTAGTTAGT+TGG | - | chr4_1:51964976-51964995 | Msa0554580:three_prime_UTR | 40.0% |
| AGAGAATAGGGAATAGGGAA+TGG | + | chr4_1:51965018-51965037 | None:intergenic | 40.0% | |
| AGAGGAGAGAATAGGGAATA+GGG | + | chr4_1:51965023-51965042 | None:intergenic | 40.0% | |
| GAAGAAGAGAGGAGAGAATA+GGG | + | chr4_1:51965030-51965049 | None:intergenic | 40.0% | |
| ATAGGGTATGATCAGTCTGA+AGG | - | chr4_1:51965484-51965503 | Msa0554580:intron | 40.0% | |
| !! | CTTCTGGTGCCAATTTTTGT+GGG | - | chr4_1:51965555-51965574 | Msa0554580:intron | 40.0% |
| TCTGATTTCCTTCATGGAAC+AGG | - | chr4_1:51965850-51965869 | Msa0554580:CDS | 40.0% | |
| CTGATTTCCTTCATGGAACA+GGG | - | chr4_1:51965851-51965870 | Msa0554580:CDS | 40.0% | |
| TGCACTGCTTTCTCAGAAAA+TGG | + | chr4_1:51965929-51965948 | None:intergenic | 40.0% | |
| GCTTCTTCAATTACCAATCC+AGG | - | chr4_1:51965952-51965971 | Msa0554580:CDS | 40.0% | |
| TCCTTCAGCAACTTTCCTAA+GGG | + | chr4_1:51966151-51966170 | None:intergenic | 40.0% | |
| TTCCTTCAGCAACTTTCCTA+AGG | + | chr4_1:51966152-51966171 | None:intergenic | 40.0% | |
| AATTTAATAGCGAGCGGCAT+TGG | + | chr4_1:51966380-51966399 | None:intergenic | 40.0% | |
| GCGAGAAGGTCAGAAAAAAA+TGG | + | chr4_1:51966733-51966752 | None:intergenic | 40.0% | |
| TTCAACAGAAAAAGGCGAGA+AGG | + | chr4_1:51966747-51966766 | None:intergenic | 40.0% | |
| !! | TCCCTGGATGTTTTTACTAC+AGG | - | chr4_1:51966901-51966920 | Msa0554580:intron | 40.0% |
| GAAAATCATGCCTTGAGCAT+CGG | - | chr4_1:51966923-51966942 | Msa0554580:intron | 40.0% | |
| AAAATCATGCCTTGAGCATC+GGG | - | chr4_1:51966924-51966943 | Msa0554580:intron | 40.0% | |
| AATTGGGGTTTCCATTCCTA+AGG | + | chr4_1:51967068-51967087 | None:intergenic | 40.0% | |
| GCATCTTGGAATCAGAATTG+GGG | + | chr4_1:51967083-51967102 | None:intergenic | 40.0% | |
| GAGCATCTTGGAATCAGAAT+TGG | + | chr4_1:51967085-51967104 | None:intergenic | 40.0% | |
| TGATTCCAAGATGCTCAGAA+AGG | - | chr4_1:51967089-51967108 | Msa0554580:CDS | 40.0% | |
| GTCGCATTCAAACATCTGTA+AGG | - | chr4_1:51967253-51967272 | Msa0554580:intron | 40.0% | |
| GATAGTACTTGCACAGTCAT+CGG | + | chr4_1:51967423-51967442 | None:intergenic | 40.0% | |
| ! | GCAAGTACTATCGTGTTTTG+AGG | - | chr4_1:51967431-51967450 | Msa0554580:intron | 40.0% |
| !! | AAACTTCAATGGTGCTGCAA+AGG | - | chr4_1:51967585-51967604 | Msa0554580:CDS | 40.0% |
| ! | CACGAGGACAAACTTTAAGA+AGG | + | chr4_1:51967769-51967788 | None:intergenic | 40.0% |
| CAACACGTGTGTACAATAGA+AGG | + | chr4_1:51967807-51967826 | None:intergenic | 40.0% | |
| ACTCCCATTTCAAAGAGATC+TGG | + | chr4_1:51967857-51967876 | None:intergenic | 40.0% | |
| TTCGTTTCAACTTCCAACTG+CGG | - | chr4_1:51968111-51968130 | Msa0554580:intron | 40.0% | |
| ATACAAAGGCTGAGGATAGA+TGG | + | chr4_1:51968193-51968212 | None:intergenic | 40.0% | |
| AGGGTTGACATGAAGCAAAA+AGG | + | chr4_1:51968276-51968295 | None:intergenic | 40.0% | |
| ! | TTTTGCTTCATGTCAACCCT+TGG | - | chr4_1:51968276-51968295 | Msa0554580:CDS | 40.0% |
| CATGTCAACCCTTGGTTAAT+TGG | - | chr4_1:51968284-51968303 | Msa0554580:CDS | 40.0% | |
| TATATCGACACAAGGTTCTC+AGG | + | chr4_1:51968595-51968614 | None:intergenic | 40.0% | |
| GTTAGTTACTTGTGGTGAAC+TGG | + | chr4_1:51969035-51969054 | None:intergenic | 40.0% | |
| CTTATCCAAACCACTGTTGA+AGG | - | chr4_1:51969074-51969093 | Msa0554580:intron | 40.0% | |
| TGTAACCTTCAACAGTGGTT+TGG | + | chr4_1:51969082-51969101 | None:intergenic | 40.0% | |
| GATTCGGACTTCCTTTAACA+TGG | + | chr4_1:51969213-51969232 | None:intergenic | 40.0% | |
| CATCATTTACTTAAGTGCCC+AGG | + | chr4_1:51969312-51969331 | None:intergenic | 40.0% | |
| GGACATTTGATATGAGATGG+AGG | - | chr4_1:51969396-51969415 | Msa0554580:intron | 40.0% | |
| TTATGATGATTGCTGGACGA+AGG | - | chr4_1:51969460-51969479 | Msa0554580:intron | 40.0% | |
| ATAGATGCTGTCTGCACATT+TGG | + | chr4_1:51969641-51969660 | None:intergenic | 40.0% | |
| CAGACAGCATCTATGTTCAA+AGG | - | chr4_1:51969647-51969666 | Msa0554580:intron | 40.0% | |
| AAAGAAAAGGGGACAATAGG+AGG | + | chr4_1:51969680-51969699 | None:intergenic | 40.0% | |
| CCTAAAGAAAAGGGGACAAT+AGG | + | chr4_1:51969683-51969702 | None:intergenic | 40.0% | |
| ! | CCTATTGTCCCCTTTTCTTT+AGG | - | chr4_1:51969680-51969699 | Msa0554580:intron | 40.0% |
| CAAGAGACCCTAAAGAAAAG+GGG | + | chr4_1:51969691-51969710 | None:intergenic | 40.0% | |
| CCAAGAGACCCTAAAGAAAA+GGG | + | chr4_1:51969692-51969711 | None:intergenic | 40.0% | |
| TCCAAGAGACCCTAAAGAAA+AGG | + | chr4_1:51969693-51969712 | None:intergenic | 40.0% | |
| CGAAGTTGAAGGATACAGAA+AGG | + | chr4_1:51969725-51969744 | None:intergenic | 40.0% | |
| AACGAGGTTACTATTGATCG+TGG | - | chr4_1:51969964-51969983 | Msa0554580:CDS | 40.0% | |
| CAAAGAATATGCAGTACTGC+CGG | + | chr4_1:51970082-51970101 | None:intergenic | 40.0% | |
| !! | TTCAAGAAAGTACCTGAGGA+TGG | + | chr4_1:51970125-51970144 | None:intergenic | 40.0% |
| CATGTGAACAGCAAAACAAC+GGG | + | chr4_1:51970284-51970303 | None:intergenic | 40.0% | |
| AGGTATCATCCAGTAACACA+AGG | + | chr4_1:51970329-51970348 | None:intergenic | 40.0% | |
| ! | AGGAGGATGTTGATAGAACA+TGG | + | chr4_1:51970461-51970480 | None:intergenic | 40.0% |
| !!! | TTTGAAGACGGGGTTTTAGA+TGG | + | chr4_1:51970489-51970508 | None:intergenic | 40.0% |
| GCCTAAAAGATAGGGAATGT+GGG | + | chr4_1:51970548-51970567 | None:intergenic | 40.0% | |
| ACATGCTCTGGTAATATCAG+TGG | + | chr4_1:51970570-51970589 | None:intergenic | 40.0% | |
| TACCAGAGCATGTGACTTTA+CGG | - | chr4_1:51970577-51970596 | Msa0554580:intron | 40.0% | |
| TTCTTGCACAGCATTCATGA+GGG | - | chr4_1:51970747-51970766 | Msa0554580:intron | 40.0% | |
| CAAACCAATGCTTTGTGGGA+GGG | + | chr4_1:51964967-51964986 | None:intergenic | 45.0% | |
| GAGAGGAGAGAATAGGGAAT+AGG | + | chr4_1:51965024-51965043 | None:intergenic | 45.0% | |
| GGAAGAAGAGAGGAGAGAAT+AGG | + | chr4_1:51965031-51965050 | None:intergenic | 45.0% | |
| TCCTCTCTTCTTCCATTCCA+TGG | - | chr4_1:51965037-51965056 | Msa0554580:three_prime_UTR | 45.0% | |
| TCACAAGCTCAATTCTCCCA+CGG | - | chr4_1:51965067-51965086 | Msa0554580:three_prime_UTR | 45.0% | |
| GTATGATCAGTCTGAAGGTG+CGG | - | chr4_1:51965489-51965508 | Msa0554580:intron | 45.0% | |
| CCACAAAAATTGGCACCAGA+AGG | + | chr4_1:51965557-51965576 | None:intergenic | 45.0% | |
| !! | CCTTCTGGTGCCAATTTTTG+TGG | - | chr4_1:51965554-51965573 | Msa0554580:intron | 45.0% |
| CAAGTGTTCTGTGGGAAGAA+TGG | - | chr4_1:51965692-51965711 | Msa0554580:intron | 45.0% | |
| CGAATTTCCCTGTTCCATGA+AGG | + | chr4_1:51965861-51965880 | None:intergenic | 45.0% | |
| TAAGATGGTCATCAGAACCC+TGG | + | chr4_1:51965973-51965992 | None:intergenic | 45.0% | |
| TTTCCTAAGGGTCTTTGCGA+CGG | + | chr4_1:51966139-51966158 | None:intergenic | 45.0% | |
| ACCCTTAGGAAAGTTGCTGA+AGG | - | chr4_1:51966147-51966166 | Msa0554580:intron | 45.0% | |
| ! | AATATGAGTTGGAGCGGACA+CGG | - | chr4_1:51966211-51966230 | Msa0554580:CDS | 45.0% |
| TTTGTTCCCATGACGTCCTT+AGG | - | chr4_1:51967049-51967068 | Msa0554580:intron | 45.0% | |
| TCCATTCCTAAGGACGTCAT+GGG | + | chr4_1:51967058-51967077 | None:intergenic | 45.0% | |
| TTCCATTCCTAAGGACGTCA+TGG | + | chr4_1:51967059-51967078 | None:intergenic | 45.0% | |
| CCTGCCTCAGTAAATAAGTC+AGG | + | chr4_1:51967557-51967576 | None:intergenic | 45.0% | |
| CCTGACTTATTTACTGAGGC+AGG | - | chr4_1:51967554-51967573 | Msa0554580:CDS | 45.0% | |
| AGAAGGGACATGCTTGCTTA+TGG | + | chr4_1:51967752-51967771 | None:intergenic | 45.0% | |
| CACACGTGTTGTGCTCTAAT+TGG | - | chr4_1:51967816-51967835 | Msa0554580:intron | 45.0% | |
| ! | TCAATATGAGCACCGTCTGT+GGG | + | chr4_1:51967884-51967903 | None:intergenic | 45.0% |
| ATGAAACAATCTGCCGCAGT+TGG | + | chr4_1:51968127-51968146 | None:intergenic | 45.0% | |
| TTGGAAGGATACAAAGGCTG+AGG | + | chr4_1:51968201-51968220 | None:intergenic | 45.0% | |
| !!! | CCCTTTTCTTTAGGGTCTCT+TGG | - | chr4_1:51969689-51969708 | Msa0554580:CDS | 45.0% |
| CGGCAGTACTGCATATTCTT+TGG | - | chr4_1:51970080-51970099 | Msa0554580:intron | 45.0% | |
| ACTGCATATTCTTTGGCAGC+TGG | - | chr4_1:51970087-51970106 | Msa0554580:intron | 45.0% | |
| !! | GCTCTTCAAGAAAGTACCTG+AGG | + | chr4_1:51970129-51970148 | None:intergenic | 45.0% |
| AACCTGCAGATTTGAAGACG+GGG | + | chr4_1:51970499-51970518 | None:intergenic | 45.0% | |
| GAACCTGCAGATTTGAAGAC+GGG | + | chr4_1:51970500-51970519 | None:intergenic | 45.0% | |
| GGAACCTGCAGATTTGAAGA+CGG | + | chr4_1:51970501-51970520 | None:intergenic | 45.0% | |
| GTCTTCAAATCTGCAGGTTC+CGG | - | chr4_1:51970500-51970519 | Msa0554580:intron | 45.0% | |
| TCTTCAAATCTGCAGGTTCC+GGG | - | chr4_1:51970501-51970520 | Msa0554580:intron | 45.0% | |
| GATAGGGAATGTGGGCAAAT+TGG | + | chr4_1:51970540-51970559 | None:intergenic | 45.0% | |
| ! | GCCCACATTCCCTATCTTTT+AGG | - | chr4_1:51970544-51970563 | Msa0554580:intron | 45.0% |
| GGCCTAAAAGATAGGGAATG+TGG | + | chr4_1:51970549-51970568 | None:intergenic | 45.0% | |
| ACCAGAGCATGTGACTTTAC+GGG | - | chr4_1:51970578-51970597 | Msa0554580:intron | 45.0% | |
| GCAGATCCTCTGCTATTGAA+TGG | + | chr4_1:51970612-51970631 | None:intergenic | 45.0% | |
| TCAATAGCAGAGGATCTGCA+TGG | - | chr4_1:51970613-51970632 | Msa0554580:intron | 45.0% | |
| CAATAGCAGAGGATCTGCAT+GGG | - | chr4_1:51970614-51970633 | Msa0554580:intron | 45.0% | |
| ! | CGTCATTTGATGGCAAAGAC+AGG | - | chr4_1:51970637-51970656 | Msa0554580:intron | 45.0% |
| !! | AGATGCATTGGTTTGCAGCA+TGG | - | chr4_1:51970677-51970696 | Msa0554580:intron | 45.0% |
| CTTCTTGCACAGCATTCATG+AGG | - | chr4_1:51970746-51970765 | Msa0554580:intron | 45.0% | |
| GCATTCATGAGGGTCTTCAT+TGG | - | chr4_1:51970757-51970776 | Msa0554580:intron | 45.0% | |
| AGCGAGATTGTCATGCTTCA+CGG | + | chr4_1:51970815-51970834 | None:intergenic | 45.0% | |
| !!! | TTTTTTAAATTTGAAAAAAA+TGG | - | chr4_1:51965249-51965268 | Msa0554580:CDS | 5.0% |
| !!! | TTTTTAAATTTGAAAAAAAT+GGG | - | chr4_1:51965250-51965269 | Msa0554580:CDS | 5.0% |
| CCAAACCAATGCTTTGTGGG+AGG | + | chr4_1:51964968-51964987 | None:intergenic | 50.0% | |
| !! | CCTCCCACAAAGCATTGGTT+TGG | - | chr4_1:51964965-51964984 | Msa0554580:three_prime_UTR | 50.0% |
| GCCATGGAATGGAAGAAGAG+AGG | + | chr4_1:51965041-51965060 | None:intergenic | 50.0% | |
| GGAGAATTGAGCTTGTGAGG+AGG | + | chr4_1:51965065-51965084 | None:intergenic | 50.0% | |
| GTGGGAGAATTGAGCTTGTG+AGG | + | chr4_1:51965068-51965087 | None:intergenic | 50.0% | |
| AGACCTTAGAGCACAGTCCA+AGG | + | chr4_1:51965523-51965542 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGAATCCTTC+TGG | - | chr4_1:51965539-51965558 | Msa0554580:intron | 50.0% | |
| GTCTGAGAACCGACTAATCC+GGG | + | chr4_1:51965637-51965656 | None:intergenic | 50.0% | |
| GGTCTGAGAACCGACTAATC+CGG | + | chr4_1:51965638-51965657 | None:intergenic | 50.0% | |
| AAATTCGAGTGTGACGTCGC+AGG | - | chr4_1:51965874-51965893 | Msa0554580:CDS | 50.0% | |
| TGGTCATCAGAACCCTGGAT+TGG | + | chr4_1:51965968-51965987 | None:intergenic | 50.0% | |
| TCTTTGCGACGGCTAGAAGA+AGG | + | chr4_1:51966128-51966147 | None:intergenic | 50.0% | |
| AAAAGCTGCTGCTCAAGCTG+AGG | - | chr4_1:51966170-51966189 | Msa0554580:intron | 50.0% | |
| TCCCATGACGTCCTTAGGAA+TGG | - | chr4_1:51967054-51967073 | Msa0554580:intron | 50.0% | |
| GTTGCAGCAGGATTCCCTAT+TGG | - | chr4_1:51967162-51967181 | Msa0554580:intron | 50.0% | |
| ! | AATATGAGCACCGTCTGTGG+GGG | + | chr4_1:51967882-51967901 | None:intergenic | 50.0% |
| ! | CAATATGAGCACCGTCTGTG+GGG | + | chr4_1:51967883-51967902 | None:intergenic | 50.0% |
| ! | GTCAATATGAGCACCGTCTG+TGG | + | chr4_1:51967885-51967904 | None:intergenic | 50.0% |
| ATATGTGGAACCACGTGTCC+AGG | - | chr4_1:51968362-51968381 | Msa0554580:intron | 50.0% | |
| CACAAGGTTCTCAGGTGCAA+TGG | + | chr4_1:51968587-51968606 | None:intergenic | 50.0% | |
| AGGAGATGGCACTGTCCTAT+GGG | - | chr4_1:51968863-51968882 | Msa0554580:CDS | 50.0% | |
| GAAGGTTGAGCTACCATCTC+TGG | - | chr4_1:51969478-51969497 | Msa0554580:intron | 50.0% | |
| TCCTTTGTCACACGTGTGCA+AGG | - | chr4_1:51970030-51970049 | Msa0554580:CDS | 50.0% | |
| CCTTTGTCACACGTGTGCAA+GGG | - | chr4_1:51970031-51970050 | Msa0554580:CDS | 50.0% | |
| CTTTGTCACACGTGTGCAAG+GGG | - | chr4_1:51970032-51970051 | Msa0554580:CDS | 50.0% | |
| GCATATTCTTTGGCAGCTGG+AGG | - | chr4_1:51970090-51970109 | Msa0554580:intron | 50.0% | |
| TTTGGCAGCTGGAGGATCAA+TGG | - | chr4_1:51970098-51970117 | Msa0554580:intron | 50.0% | |
| AGGATCAATGGTCCATCCTC+AGG | - | chr4_1:51970110-51970129 | Msa0554580:intron | 50.0% | |
| !!! | GGTTTTAGATGGAGGACAGG+AGG | + | chr4_1:51970478-51970497 | None:intergenic | 50.0% |
| !!! | GAAGACGGGGTTTTAGATGG+AGG | + | chr4_1:51970486-51970505 | None:intergenic | 50.0% |
| AACCCCGTCTTCAAATCTGC+AGG | - | chr4_1:51970494-51970513 | Msa0554580:intron | 50.0% | |
| ACCCGTAAAGTCACATGCTC+TGG | + | chr4_1:51970582-51970601 | None:intergenic | 50.0% | |
| TCTGCATGGGCGTCATTTGA+TGG | - | chr4_1:51970627-51970646 | Msa0554580:intron | 50.0% | |
| GACAGGAAACAGTTAGCACC+AGG | - | chr4_1:51970654-51970673 | Msa0554580:intron | 50.0% | |
| GTTAGCACCAGGAGATGCAT+TGG | - | chr4_1:51970665-51970684 | Msa0554580:intron | 50.0% | |
| CTGCAAACCAATGCATCTCC+TGG | + | chr4_1:51970675-51970694 | None:intergenic | 50.0% | |
| GAATCTCCATGACAAGCCGT+AGG | + | chr4_1:51970717-51970736 | None:intergenic | 50.0% | |
| CGAGATTGTCATGCTTCACG+GGG | + | chr4_1:51970813-51970832 | None:intergenic | 50.0% | |
| GCGAGATTGTCATGCTTCAC+GGG | + | chr4_1:51970814-51970833 | None:intergenic | 50.0% | |
| CCAATGCTTTGTGGGAGGGA+GGG | + | chr4_1:51964963-51964982 | None:intergenic | 55.0% | |
| ACCAATGCTTTGTGGGAGGG+AGG | + | chr4_1:51964964-51964983 | None:intergenic | 55.0% | |
| !! | TGTGAGGAGGTGCCATGGAA+TGG | + | chr4_1:51965052-51965071 | None:intergenic | 55.0% |
| ! | TCAGTCTGAAGGTGCGGACT+TGG | - | chr4_1:51965495-51965514 | Msa0554580:intron | 55.0% |
| ! | CAGTCTGAAGGTGCGGACTT+GGG | - | chr4_1:51965496-51965515 | Msa0554580:intron | 55.0% |
| GGACCTTGGACTGTGCTCTA+AGG | - | chr4_1:51965517-51965536 | Msa0554580:intron | 55.0% | |
| !! | GGACTGTGCTCTAAGGTCTC+AGG | - | chr4_1:51965524-51965543 | Msa0554580:intron | 55.0% |
| TTAATTGGGTCCCCCGCTAG+TGG | - | chr4_1:51965597-51965616 | Msa0554580:intron | 55.0% | |
| !! | GGGATTGGTCCCGGATTAGT+CGG | - | chr4_1:51965625-51965644 | Msa0554580:intron | 55.0% |
| TAGCCGTCGCAAAGACCCTT+AGG | - | chr4_1:51966133-51966152 | Msa0554580:intron | 55.0% | |
| CAAGATCAGCCCGATGCTCA+AGG | + | chr4_1:51966936-51966955 | None:intergenic | 55.0% | |
| CTTACTACTGCGCTCTGCTG+TGG | + | chr4_1:51967667-51967686 | None:intergenic | 55.0% | |
| AGCAGAGCGCAGTAGTAAGC+AGG | - | chr4_1:51967668-51967687 | Msa0554580:intron | 55.0% | |
| AGAAGATCGACCTGGACACG+TGG | + | chr4_1:51968375-51968394 | None:intergenic | 55.0% | |
| ACGTGTCCAGGTCGATCTTC+TGG | - | chr4_1:51968374-51968393 | Msa0554580:intron | 55.0% | |
| TGTCCAGGTCGATCTTCTGG+AGG | - | chr4_1:51968377-51968396 | Msa0554580:intron | 55.0% | |
| ACTCCTCCAGAAGATCGACC+TGG | + | chr4_1:51968383-51968402 | None:intergenic | 55.0% | |
| GAGGAGATGGCACTGTCCTA+TGG | - | chr4_1:51968862-51968881 | Msa0554580:CDS | 55.0% | |
| ! | AAGGGGACAATAGGAGGCAC+TGG | + | chr4_1:51969674-51969693 | None:intergenic | 55.0% |
| CCCTTGCACACGTGTGACAA+AGG | + | chr4_1:51970034-51970053 | None:intergenic | 55.0% | |
| !!! | CGGGGTTTTAGATGGAGGAC+AGG | + | chr4_1:51970481-51970500 | None:intergenic | 55.0% |
| CCATGACAAGCCGTAGGAAC+AGG | + | chr4_1:51970711-51970730 | None:intergenic | 55.0% | |
| CCTGTTCCTACGGCTTGTCA+TGG | - | chr4_1:51970708-51970727 | Msa0554580:intron | 55.0% | |
| ATGCTTTGTGGGAGGGAGGG+AGG | + | chr4_1:51964960-51964979 | None:intergenic | 60.0% | |
| CCCTCCCTCCCACAAAGCAT+TGG | - | chr4_1:51964960-51964979 | Msa0554580:three_prime_UTR | 60.0% | |
| !! | GAGCTTGTGAGGAGGTGCCA+TGG | + | chr4_1:51965057-51965076 | None:intergenic | 60.0% |
| AAGGTGCGGACTTGGGACCT+TGG | - | chr4_1:51965503-51965522 | Msa0554580:intron | 60.0% | |
| AATCCCACCGTCCACTAGCG+GGG | + | chr4_1:51965611-51965630 | None:intergenic | 60.0% | |
| CAATCCCACCGTCCACTAGC+GGG | + | chr4_1:51965612-51965631 | None:intergenic | 60.0% | |
| CCAATCCCACCGTCCACTAG+CGG | + | chr4_1:51965613-51965632 | None:intergenic | 60.0% | |
| GTGACGTCGCAGGCTGAGAA+TGG | - | chr4_1:51965884-51965903 | Msa0554580:CDS | 60.0% | |
| CTCAAGCTGAGGCTGCCGAA+TGG | - | chr4_1:51966181-51966200 | Msa0554580:intron | 60.0% | |
| ATGGGAGTCACCCCCACAGA+CGG | - | chr4_1:51967869-51967888 | Msa0554580:intron | 60.0% | |
| GTCACACGTGTGCAAGGGGA+TGG | - | chr4_1:51970036-51970055 | Msa0554580:CDS | 60.0% | |
| ! | TGGTTTGCAGCATGGCACCC+TGG | - | chr4_1:51970685-51970704 | Msa0554580:intron | 60.0% |
| CAAGCCGTAGGAACAGGCCA+GGG | + | chr4_1:51970705-51970724 | None:intergenic | 60.0% | |
| ACAAGCCGTAGGAACAGGCC+AGG | + | chr4_1:51970706-51970725 | None:intergenic | 60.0% | |
| TTGGGTCCCCCGCTAGTGGA+CGG | - | chr4_1:51965601-51965620 | Msa0554580:intron | 65.0% | |
| ATCCCACCGTCCACTAGCGG+GGG | + | chr4_1:51965610-51965629 | None:intergenic | 65.0% | |
| ! | CCGCTAGTGGACGGTGGGAT+TGG | - | chr4_1:51965610-51965629 | Msa0554580:intron | 65.0% |
| !! | GTGGACGGTGGGATTGGTCC+CGG | - | chr4_1:51965616-51965635 | Msa0554580:intron | 65.0% |
| GGCACCCTGGCCTGTTCCTA+CGG | - | chr4_1:51970698-51970717 | Msa0554580:intron | 65.0% | |
| ! | GTCCCCCGCTAGTGGACGGT+GGG | - | chr4_1:51965605-51965624 | Msa0554580:intron | 70.0% |
| ! | GGTCCCCCGCTAGTGGACGG+TGG | - | chr4_1:51965604-51965623 | Msa0554580:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 51964857 | 51971082 | 51964857 | ID=Msa0554580;Name=Msa0554580 |
| chr4_1 | mRNA | 51964857 | 51971082 | 51964857 | ID=Msa0554580-mRNA-1;Parent=Msa0554580;Name=Msa0554580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=199|1|1|1|1|1|11|258|523 |
| chr4_1 | exon | 51964857 | 51965423 | 51964857 | ID=Msa0554580-mRNA-1:exon:14977;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51965808 | 51966115 | 51965808 | ID=Msa0554580-mRNA-1:exon:14976;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51966211 | 51966289 | 51966211 | ID=Msa0554580-mRNA-1:exon:14975;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51967055 | 51967128 | 51967055 | ID=Msa0554580-mRNA-1:exon:14974;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51967501 | 51967607 | 51967501 | ID=Msa0554580-mRNA-1:exon:14973;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51967987 | 51968081 | 51967987 | ID=Msa0554580-mRNA-1:exon:14972;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51968250 | 51968363 | 51968250 | ID=Msa0554580-mRNA-1:exon:14971;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51968829 | 51969016 | 51968829 | ID=Msa0554580-mRNA-1:exon:14970;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51969684 | 51969803 | 51969684 | ID=Msa0554580-mRNA-1:exon:14969;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51969923 | 51970067 | 51969923 | ID=Msa0554580-mRNA-1:exon:14968;Parent=Msa0554580-mRNA-1 |
| chr4_1 | exon | 51970851 | 51971082 | 51970851 | ID=Msa0554580-mRNA-1:exon:14967;Parent=Msa0554580-mRNA-1 |
| chr4_1 | five_prime_UTR | 51970884 | 51971082 | 51970884 | ID=Msa0554580-mRNA-1:five_prime_utr;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51970851 | 51970883 | 51970851 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51969923 | 51970067 | 51969923 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51969684 | 51969803 | 51969684 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51968829 | 51969016 | 51968829 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51968250 | 51968363 | 51968250 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51967987 | 51968081 | 51967987 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51967501 | 51967607 | 51967501 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51967055 | 51967128 | 51967055 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51966211 | 51966289 | 51966211 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51965808 | 51966115 | 51965808 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | CDS | 51965115 | 51965423 | 51965115 | ID=Msa0554580-mRNA-1:cds;Parent=Msa0554580-mRNA-1 |
| chr4_1 | three_prime_UTR | 51964857 | 51965114 | 51964857 | ID=Msa0554580-mRNA-1:three_prime_utr;Parent=Msa0554580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
