Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428510 | XP_003602771.2 | 96.479 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428510 | sp|Q9M306|ZDH10_ARATH | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 1.58e-162 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428510 | G7J3C1 | 96.479 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030730 | Msa0428510 | -0.801221 | 9.973574e-49 | -8.615850e-47 |
| Msa0049650 | Msa0428510 | 0.801010 | 1.101790e-48 | -8.615850e-47 |
| Msa0059960 | Msa0428510 | 0.811865 | 5.653687e-51 | -8.615850e-47 |
| Msa0073820 | Msa0428510 | -0.834585 | 2.752198e-56 | -8.615850e-47 |
| Msa0092660 | Msa0428510 | -0.800609 | 1.330024e-48 | -8.615850e-47 |
| Msa0140530 | Msa0428510 | 0.826202 | 3.086655e-54 | -8.615850e-47 |
| Msa0163550 | Msa0428510 | -0.801558 | 8.509453e-49 | -8.615850e-47 |
| Msa0171780 | Msa0428510 | -0.818938 | 1.509456e-52 | -8.615850e-47 |
| Msa0171930 | Msa0428510 | -0.818658 | 1.747109e-52 | -8.615850e-47 |
| Msa0183170 | Msa0428510 | -0.811228 | 7.773930e-51 | -8.615850e-47 |
| Msa0216810 | Msa0428510 | 0.854719 | 1.020543e-61 | -8.615850e-47 |
| Msa0227020 | Msa0428510 | 0.861152 | 1.253880e-63 | -8.615850e-47 |
| Msa0228340 | Msa0428510 | 0.800759 | 1.239611e-48 | -8.615850e-47 |
| Msa0229320 | Msa0428510 | -0.811721 | 6.075493e-51 | -8.615850e-47 |
| Msa0367370 | Msa0428510 | -0.822479 | 2.317471e-53 | -8.615850e-47 |
| Msa0374070 | Msa0428510 | -0.819336 | 1.225305e-52 | -8.615850e-47 |
| Msa0377050 | Msa0428510 | 0.937180 | 5.268122e-98 | -8.615850e-47 |
| Msa0378910 | Msa0428510 | 0.937144 | 5.577418e-98 | -8.615850e-47 |
| Msa0381580 | Msa0428510 | 0.831628 | 1.498535e-55 | -8.615850e-47 |
| Msa0423250 | Msa0428510 | -0.818202 | 2.216306e-52 | -8.615850e-47 |
| Msa0428510 | Msa0429530 | 0.807682 | 4.485962e-50 | -8.615850e-47 |
| Msa0428510 | Msa0466930 | -0.822483 | 2.312055e-53 | -8.615850e-47 |
| Msa0428510 | Msa0469390 | -0.819519 | 1.113288e-52 | -8.615850e-47 |
| Msa0428510 | Msa0474860 | 0.928247 | 3.778462e-92 | -8.615850e-47 |
| Msa0428510 | Msa0547460 | 0.809152 | 2.178922e-50 | -8.615850e-47 |
| Msa0428510 | Msa0554580 | 0.818333 | 2.070043e-52 | -8.615850e-47 |
| Msa0428510 | Msa0555940 | -0.801270 | 9.747760e-49 | -8.615850e-47 |
| Msa0428510 | Msa0563530 | -0.814185 | 1.752482e-51 | -8.615850e-47 |
| Msa0428510 | Msa0567290 | -0.808376 | 3.193201e-50 | -8.615850e-47 |
| Msa0428510 | Msa0577940 | 0.805074 | 1.591132e-49 | -8.615850e-47 |
| Msa0428510 | Msa0602210 | 0.802061 | 6.706886e-49 | -8.615850e-47 |
| Msa0428510 | Msa0619590 | 0.808488 | 3.021559e-50 | -8.615850e-47 |
| Msa0428510 | Msa0621720 | 0.802321 | 5.931120e-49 | -8.615850e-47 |
| Msa0428510 | Msa0629290 | -0.809859 | 1.536710e-50 | -8.615850e-47 |
| Msa0428510 | Msa0646570 | -0.809431 | 1.898414e-50 | -8.615850e-47 |
| Msa0428510 | Msa0659800 | 0.864408 | 1.242347e-64 | -8.615850e-47 |
| Msa0428510 | Msa0683060 | 0.810187 | 1.305558e-50 | -8.615850e-47 |
| Msa0428510 | Msa0698600 | -0.821637 | 3.632960e-53 | -8.615850e-47 |
| Msa0428510 | Msa0703760 | -0.817834 | 2.685207e-52 | -8.615850e-47 |
| Msa0428510 | Msa0717920 | 0.842347 | 2.732731e-58 | -8.615850e-47 |
| Msa0428510 | Msa0725480 | 0.810348 | 1.205108e-50 | -8.615850e-47 |
| Msa0428510 | Msa0746600 | -0.805489 | 1.302668e-49 | -8.615850e-47 |
| Msa0428510 | Msa0766100 | 0.813836 | 2.092199e-51 | -8.615850e-47 |
| Msa0428510 | Msa0813320 | 0.867098 | 1.757213e-65 | -8.615850e-47 |
| Msa0428510 | Msa0843690 | -0.800453 | 1.431168e-48 | -8.615850e-47 |
| Msa0428510 | Msa1106560 | -0.814802 | 1.280024e-51 | -8.615850e-47 |
| Msa0428510 | Msa1129560 | -0.845882 | 3.076793e-59 | -8.615850e-47 |
| Msa0428510 | Msa1129720 | -0.817851 | 2.660705e-52 | -8.615850e-47 |
| Msa0428510 | Msa1149760 | -0.803952 | 2.726207e-49 | -8.615850e-47 |
| Msa0428510 | Msa1171060 | 0.817723 | 2.844784e-52 | -8.615850e-47 |
| Msa0428510 | Msa1183390 | -0.803843 | 2.872179e-49 | -8.615850e-47 |
| Msa0428510 | Msa1200880 | 0.822483 | 2.312055e-53 | -8.615850e-47 |
| Msa0428510 | Msa1220460 | 0.806962 | 6.376165e-50 | -8.615850e-47 |
| Msa0428510 | Msa1220480 | 0.806882 | 6.627336e-50 | -8.615850e-47 |
| Msa0428510 | Msa1265820 | 0.818508 | 1.889352e-52 | -8.615850e-47 |
| Msa0428510 | Msa1271510 | -0.801536 | 8.597772e-49 | -8.615850e-47 |
| Msa0428510 | Msa1283770 | -0.807555 | 4.773225e-50 | -8.615850e-47 |
| Msa0428510 | Msa1305520 | -0.839543 | 1.488359e-57 | -8.615850e-47 |
| Msa0428510 | Msa1309360 | -0.807971 | 3.893918e-50 | -8.615850e-47 |
| Msa0428510 | Msa1396750 | 0.848728 | 5.094475e-60 | -8.615850e-47 |
| Msa0428510 | Msa1401400 | 0.823597 | 1.271642e-53 | -8.615850e-47 |
| Msa0428510 | Msa1407710 | -0.823886 | 1.087841e-53 | -8.615850e-47 |
| Msa0428510 | Msa1412520 | -0.805249 | 1.462129e-49 | -8.615850e-47 |
| Msa0428510 | Msa1422900 | -0.809909 | 1.498825e-50 | -8.615850e-47 |
| Msa0428510 | Msa1445430 | 0.804068 | 2.580012e-49 | -8.615850e-47 |
| Msa0259860 | Msa0428510 | 0.830967 | 2.179075e-55 | -8.615850e-47 |
| Msa0289780 | Msa0428510 | -0.826682 | 2.372040e-54 | -8.615850e-47 |
| Msa0298940 | Msa0428510 | -0.829675 | 4.507749e-55 | -8.615850e-47 |
| Msa0298970 | Msa0428510 | -0.814288 | 1.662812e-51 | -8.615850e-47 |
| Msa0305340 | Msa0428510 | 0.858174 | 9.874117e-63 | -8.615850e-47 |
| Msa0323990 | Msa0428510 | -0.807312 | 5.375561e-50 | -8.615850e-47 |
| Msa0327550 | Msa0428510 | -0.824340 | 8.513606e-54 | -8.615850e-47 |
| Msa0341460 | Msa0428510 | 0.842769 | 2.111645e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428510 | MtrunA17_Chr3g0131931 | 96.479 | 426 | 15 | 0 | 1 | 426 | 1 | 426 | 0.0 | 862 |
| Msa0428510 | MtrunA17_Chr6g0462021 | 55.140 | 428 | 171 | 5 | 4 | 413 | 5 | 429 | 6.59e-167 | 476 |
| Msa0428510 | MtrunA17_Chr7g0251761 | 53.687 | 434 | 179 | 5 | 4 | 424 | 5 | 429 | 4.39e-152 | 437 |
| Msa0428510 | MtrunA17_Chr1g0201631 | 48.139 | 403 | 179 | 6 | 21 | 397 | 5 | 403 | 1.78e-133 | 390 |
| Msa0428510 | MtrunA17_Chr6g0464751 | 49.507 | 406 | 171 | 8 | 21 | 397 | 5 | 405 | 2.14e-129 | 379 |
| Msa0428510 | MtrunA17_Chr7g0255151 | 51.438 | 313 | 138 | 4 | 11 | 315 | 15 | 321 | 1.03e-107 | 325 |
| Msa0428510 | MtrunA17_Chr7g0255161 | 53.968 | 252 | 97 | 4 | 79 | 315 | 12 | 259 | 8.39e-90 | 276 |
| Msa0428510 | MtrunA17_Chr5g0406311 | 36.264 | 182 | 97 | 6 | 147 | 321 | 164 | 333 | 1.59e-21 | 95.1 |
| Msa0428510 | MtrunA17_Chr4g0064931 | 28.968 | 252 | 150 | 7 | 86 | 325 | 322 | 556 | 6.07e-21 | 95.5 |
| Msa0428510 | MtrunA17_Chr7g0273371 | 28.718 | 195 | 112 | 3 | 151 | 318 | 160 | 354 | 7.99e-20 | 90.9 |
| Msa0428510 | MtrunA17_Chr4g0011001 | 29.963 | 267 | 142 | 10 | 51 | 297 | 27 | 268 | 9.70e-20 | 89.4 |
| Msa0428510 | MtrunA17_Chr1g0211241 | 30.568 | 229 | 122 | 7 | 87 | 307 | 416 | 615 | 1.49e-19 | 91.3 |
| Msa0428510 | MtrunA17_Chr1g0199411 | 28.440 | 218 | 115 | 6 | 87 | 292 | 53 | 241 | 1.45e-18 | 85.5 |
| Msa0428510 | MtrunA17_Chr4g0009911 | 27.650 | 217 | 110 | 6 | 103 | 301 | 76 | 263 | 2.53e-17 | 82.0 |
| Msa0428510 | MtrunA17_Chr4g0049351 | 32.903 | 155 | 89 | 5 | 151 | 292 | 362 | 514 | 4.38e-17 | 83.6 |
| Msa0428510 | MtrunA17_Chr1g0211231 | 29.487 | 234 | 110 | 9 | 86 | 307 | 340 | 530 | 1.31e-16 | 82.0 |
| Msa0428510 | MtrunA17_Chr7g0276121 | 29.245 | 212 | 110 | 10 | 103 | 297 | 83 | 271 | 2.37e-14 | 73.6 |
| Msa0428510 | MtrunA17_Chr4g0042821 | 32.824 | 131 | 78 | 3 | 152 | 272 | 180 | 310 | 1.06e-12 | 70.1 |
| Msa0428510 | MtrunA17_Chr3g0144181 | 28.788 | 132 | 82 | 3 | 152 | 272 | 149 | 279 | 5.88e-11 | 64.3 |
| Msa0428510 | MtrunA17_Chr1g0193941 | 26.866 | 134 | 86 | 4 | 150 | 272 | 155 | 287 | 7.15e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428510 | AT3G48760.1 | 54.206 | 428 | 173 | 6 | 19 | 423 | 26 | 453 | 1.60e-163 | 469 |
| Msa0428510 | AT3G26935.1 | 53.125 | 416 | 167 | 6 | 4 | 397 | 5 | 414 | 3.73e-159 | 456 |
| Msa0428510 | AT5G41060.1 | 55.639 | 399 | 153 | 6 | 6 | 386 | 7 | 399 | 2.74e-154 | 443 |
| Msa0428510 | AT5G41060.2 | 56.684 | 374 | 141 | 5 | 31 | 386 | 14 | 384 | 3.84e-148 | 427 |
| Msa0428510 | AT4G24630.1 | 48.346 | 393 | 188 | 6 | 21 | 399 | 4 | 395 | 1.61e-131 | 385 |
| Msa0428510 | AT5G41060.3 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 2.08e-129 | 377 |
| Msa0428510 | AT5G41060.4 | 56.418 | 335 | 125 | 5 | 70 | 386 | 1 | 332 | 2.08e-129 | 377 |
| Msa0428510 | AT5G50020.3 | 56.711 | 298 | 127 | 2 | 21 | 316 | 4 | 301 | 3.28e-126 | 372 |
| Msa0428510 | AT5G50020.2 | 56.711 | 298 | 127 | 2 | 21 | 316 | 34 | 331 | 7.32e-126 | 372 |
| Msa0428510 | AT5G50020.1 | 54.698 | 298 | 126 | 3 | 21 | 316 | 4 | 294 | 3.56e-118 | 351 |
| Msa0428510 | AT3G56930.1 | 52.288 | 306 | 140 | 2 | 16 | 315 | 5 | 310 | 2.21e-111 | 336 |
| Msa0428510 | AT5G05070.1 | 52.805 | 303 | 129 | 5 | 20 | 315 | 36 | 331 | 1.92e-108 | 326 |
| Msa0428510 | AT2G40990.1 | 39.474 | 418 | 218 | 9 | 5 | 411 | 12 | 405 | 2.96e-96 | 295 |
| Msa0428510 | AT3G56920.1 | 43.824 | 340 | 172 | 4 | 21 | 357 | 10 | 333 | 1.36e-92 | 283 |
| Msa0428510 | AT3G56930.2 | 47.195 | 303 | 118 | 3 | 19 | 315 | 8 | 274 | 1.26e-89 | 279 |
| Msa0428510 | AT3G51390.2 | 31.048 | 248 | 123 | 6 | 86 | 300 | 73 | 305 | 1.77e-20 | 92.4 |
| Msa0428510 | AT3G51390.1 | 33.684 | 190 | 111 | 4 | 118 | 300 | 129 | 310 | 7.65e-20 | 90.5 |
| Msa0428510 | AT3G60800.1 | 28.358 | 268 | 147 | 8 | 51 | 297 | 27 | 270 | 8.22e-19 | 87.0 |
| Msa0428510 | AT3G04970.3 | 31.973 | 147 | 80 | 2 | 151 | 277 | 73 | 219 | 2.51e-18 | 85.5 |
| Msa0428510 | AT2G14255.1 | 31.818 | 154 | 92 | 4 | 151 | 292 | 363 | 515 | 6.00e-18 | 86.3 |
| Msa0428510 | AT4G22750.1 | 28.346 | 254 | 133 | 10 | 83 | 313 | 54 | 281 | 1.08e-17 | 83.6 |
| Msa0428510 | AT4G00840.1 | 30.634 | 284 | 141 | 14 | 37 | 297 | 5 | 255 | 1.13e-17 | 83.6 |
| Msa0428510 | AT5G04270.1 | 29.651 | 172 | 95 | 3 | 103 | 274 | 66 | 211 | 1.72e-17 | 82.4 |
| Msa0428510 | AT3G04970.1 | 31.973 | 147 | 80 | 2 | 151 | 277 | 160 | 306 | 2.12e-17 | 84.0 |
| Msa0428510 | AT3G09320.1 | 30.275 | 218 | 105 | 7 | 102 | 301 | 66 | 254 | 1.93e-16 | 79.7 |
| Msa0428510 | AT5G20350.1 | 25.581 | 258 | 164 | 8 | 84 | 330 | 315 | 555 | 9.24e-16 | 79.7 |
| Msa0428510 | AT4G00840.2 | 33.735 | 166 | 86 | 7 | 37 | 194 | 5 | 154 | 2.75e-15 | 75.1 |
| Msa0428510 | AT3G04970.2 | 31.690 | 142 | 77 | 2 | 151 | 272 | 160 | 301 | 5.18e-15 | 75.9 |
| Msa0428510 | AT1G69420.1 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.67e-14 | 73.9 |
| Msa0428510 | AT1G69420.2 | 31.298 | 131 | 80 | 2 | 152 | 272 | 164 | 294 | 6.67e-14 | 73.9 |
| Msa0428510 | AT4G01730.1 | 27.820 | 133 | 86 | 2 | 150 | 272 | 157 | 289 | 6.58e-12 | 67.8 |
| Msa0428510 | AT3G22180.1 | 31.061 | 132 | 79 | 5 | 152 | 272 | 173 | 303 | 9.95e-12 | 67.4 |
Find 110 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATTCTGTTGGTTCTTT+TGG | 0.104120 | 3_2:+79401536 | None:intergenic |
| TCACTTCCATCATAATTATC+TGG | 0.213227 | 3_2:+79402896 | None:intergenic |
| TCAATTAGCCCTTTGTTATA+AGG | 0.231915 | 3_2:+79401623 | None:intergenic |
| CTTGGAGGGAGGTTTATATT+TGG | 0.257102 | 3_2:-79404825 | Msa0428510:CDS |
| CGGCTTGTGTTTCATTGTTT+TGG | 0.260003 | 3_2:-79401101 | Msa0428510:three_prime_UTR |
| GGGAACAAAGCAGCAGAAAA+TGG | 0.266208 | 3_2:-79401325 | Msa0428510:CDS |
| CGAAGGATCAACGGTATTTC+CGG | 0.276497 | 3_2:+79404981 | None:intergenic |
| GACAAGTTGCTTCCTTTCTA+AGG | 0.282513 | 3_2:-79401358 | Msa0428510:CDS |
| CAATTAGCCCTTTGTTATAA+GGG | 0.322127 | 3_2:+79401624 | None:intergenic |
| TTCATTGCTGTCTGGTTTGT+TGG | 0.334463 | 3_2:-79401869 | Msa0428510:CDS |
| ATTCTCAGAGCAACAGTATA+AGG | 0.338816 | 3_2:+79400887 | None:intergenic |
| TTGTTATGTTCGGATTTGAT+AGG | 0.350269 | 3_2:-79401130 | Msa0428510:three_prime_UTR |
| GATTATAAAGACGAGGAATA+TGG | 0.354047 | 3_2:-79401449 | Msa0428510:CDS |
| TCCATTGACAATTACTTCCT+TGG | 0.361235 | 3_2:+79402829 | None:intergenic |
| AAAGCACAGAAAACAGCAAC+AGG | 0.373823 | 3_2:+79404756 | None:intergenic |
| AGTGATACATCTGTGGATTT+AGG | 0.375920 | 3_2:-79401410 | Msa0428510:CDS |
| CTTTCTAAGGCAGTCCTTGT+GGG | 0.391361 | 3_2:-79401345 | Msa0428510:CDS |
| TGTTATAAGGGTTGACTTGT+CGG | 0.392823 | 3_2:+79401636 | None:intergenic |
| CATTGTAAACTGGCATCATA+AGG | 0.394852 | 3_2:+79401492 | None:intergenic |
| TGCTCTGAGAATATAATTGC+CGG | 0.400359 | 3_2:-79400876 | Msa0428510:three_prime_UTR |
| ATTGAATATCCAGAGTGATT+AGG | 0.410341 | 3_2:+79404705 | None:intergenic |
| AGCAAAAGGCATGAACATAA+AGG | 0.422939 | 3_2:+79401987 | None:intergenic |
| GGGGCAGAGTTTGTTATGTT+CGG | 0.427660 | 3_2:-79401140 | Msa0428510:three_prime_UTR |
| TCATCAGCCTCATTGTAAAC+TGG | 0.432467 | 3_2:+79401482 | None:intergenic |
| GTAAATATAGATTTCACATC+AGG | 0.435683 | 3_2:+79404801 | None:intergenic |
| ATTATTAGTGCAATGGAAGC+AGG | 0.437732 | 3_2:+79401899 | None:intergenic |
| AAAACAATGCCGACGTCAAA+TGG | 0.448013 | 3_2:+79400851 | None:intergenic |
| CCATGGGTTGGTCAGTGTAT+TGG | 0.450019 | 3_2:-79402698 | Msa0428510:CDS |
| AGTATGCTTCACACAGAAAC+GGG | 0.450684 | 3_2:-79401386 | Msa0428510:CDS |
| TTGTGCTGATTAGATATGTA+TGG | 0.451420 | 3_2:+79401831 | None:intergenic |
| GGAACAAAGCAGCAGAAAAT+GGG | 0.455188 | 3_2:-79401324 | Msa0428510:CDS |
| CATGAACATAAAGGCAAAGC+AGG | 0.455937 | 3_2:+79401996 | None:intergenic |
| TATACACATTCATTGCTGTC+TGG | 0.456264 | 3_2:-79401877 | Msa0428510:CDS |
| ATTGCTGTCTGGTTTGTTGG+AGG | 0.458351 | 3_2:-79401866 | Msa0428510:CDS |
| GCTACTGAGTTCGCCGGCGC+CGG | 0.464541 | 3_2:+79405003 | None:intergenic |
| AAACAAACATGTAGTAGAAC+CGG | 0.470642 | 3_2:+79402029 | None:intergenic |
| TACTGAGCAATGAGAGCAGC+GGG | 0.473275 | 3_2:+79402757 | None:intergenic |
| CTGACCTCAGGAAGAGATCC+TGG | 0.475106 | 3_2:-79402950 | Msa0428510:CDS |
| CACTTCCATCATAATTATCT+GGG | 0.480034 | 3_2:+79402897 | None:intergenic |
| CTTTGTCTAGATGATTCTGT+TGG | 0.483481 | 3_2:+79401527 | None:intergenic |
| CCTTTCTAAGGCAGTCCTTG+TGG | 0.491773 | 3_2:-79401346 | Msa0428510:CDS |
| GGTTGACTTGTCGGTCATAC+CGG | 0.492971 | 3_2:+79401645 | None:intergenic |
| CATGGCGACAGCGCAATTAC+CGG | 0.493438 | 3_2:-79402048 | Msa0428510:intron |
| TCCAAGGAAGTAATTGTCAA+TGG | 0.493913 | 3_2:-79402830 | Msa0428510:CDS |
| CCACTCCCAGATAATTATGA+TGG | 0.500454 | 3_2:-79402902 | Msa0428510:CDS |
| GAATTGCGAGGCACTATGCC+AGG | 0.501439 | 3_2:+79402932 | None:intergenic |
| AGCACAGAAAACAGCAACAG+GGG | 0.504125 | 3_2:+79404758 | None:intergenic |
| AAGATGATGAATAGAAATTG+TGG | 0.507076 | 3_2:-79400968 | Msa0428510:three_prime_UTR |
| CAGTATGCTTCACACAGAAA+CGG | 0.509478 | 3_2:-79401387 | Msa0428510:CDS |
| TGTTATGTTCGGATTTGATA+GGG | 0.515498 | 3_2:-79401129 | Msa0428510:three_prime_UTR |
| ACAAATGCATCCTCCGGCGC+CGG | 0.518692 | 3_2:-79405016 | Msa0428510:exon |
| ACTCAGAGGAGATATCGATC+TGG | 0.527358 | 3_2:-79401940 | Msa0428510:CDS |
| TTTGCTGGGTTTACATCATG+AGG | 0.527634 | 3_2:-79401970 | Msa0428510:CDS |
| AAGCGGATCACCAGTGATAG+TGG | 0.528062 | 3_2:-79401254 | Msa0428510:CDS |
| ATTTCCTTTCCAAGCGCGAT+AGG | 0.533436 | 3_2:+79404948 | None:intergenic |
| CATGATGTAAACCCAGCAAA+AGG | 0.534339 | 3_2:+79401973 | None:intergenic |
| CCACAAGGACTGCCTTAGAA+AGG | 0.535328 | 3_2:+79401346 | None:intergenic |
| TTATTAGTGCAATGGAAGCA+GGG | 0.535975 | 3_2:+79401900 | None:intergenic |
| GATTTGATCATCACTGCCCA+TGG | 0.538217 | 3_2:-79402715 | Msa0428510:CDS |
| TCATCAGAACCTATCGCGCT+TGG | 0.540838 | 3_2:-79404957 | Msa0428510:CDS |
| AAGTCAACCCTTATAACAAA+GGG | 0.541030 | 3_2:-79401631 | Msa0428510:CDS |
| ATTGTAAACTGGCATCATAA+GGG | 0.543614 | 3_2:+79401493 | None:intergenic |
| AAGCACAGAAAACAGCAACA+GGG | 0.545403 | 3_2:+79404757 | None:intergenic |
| TCAAACACAAATGCATCCTC+CGG | 0.547234 | 3_2:-79405022 | Msa0428510:exon |
| TTTCCGGCTACTGAGTTCGC+CGG | 0.553399 | 3_2:+79404997 | None:intergenic |
| AGAACCTATCGCGCTTGGAA+AGG | 0.560307 | 3_2:-79404952 | Msa0428510:CDS |
| GATCATCACTGCCCATGGGT+TGG | 0.560369 | 3_2:-79402710 | Msa0428510:CDS |
| ACTGAGTTCGCCGGCGCCGG+AGG | 0.561048 | 3_2:+79405006 | None:intergenic |
| ATTGCTCTTATACTGACCTC+AGG | 0.563603 | 3_2:-79402962 | Msa0428510:CDS |
| CCATCATAATTATCTGGGAG+TGG | 0.563784 | 3_2:+79402902 | None:intergenic |
| AGGTTCATTACCACTATCAC+TGG | 0.565407 | 3_2:+79401244 | None:intergenic |
| ACCACATTTACCACGATCCA+AGG | 0.572679 | 3_2:-79402846 | Msa0428510:CDS |
| TCGGATTTGATAGGGAAGTA+CGG | 0.574055 | 3_2:-79401121 | Msa0428510:three_prime_UTR |
| ATGCCGACGTCAAATGGTGC+CGG | 0.574249 | 3_2:+79400857 | None:intergenic |
| ACAATTACTTCCTTGGATCG+TGG | 0.582722 | 3_2:+79402836 | None:intergenic |
| TCTGCTGCTTTGTTCCCACA+AGG | 0.583203 | 3_2:+79401331 | None:intergenic |
| CCAATACACTGACCAACCCA+TGG | 0.583973 | 3_2:+79402698 | None:intergenic |
| GCGCCGGCGAACTCAGTAGC+CGG | 0.585327 | 3_2:-79405000 | Msa0428510:CDS |
| TGTGTATATTATTAGTGCAA+TGG | 0.589926 | 3_2:+79401892 | None:intergenic |
| TTACAATGAGGCTGATGAGG+TGG | 0.589928 | 3_2:-79401477 | Msa0428510:CDS |
| ACAGAATCATCTAGACAAAG+AGG | 0.591209 | 3_2:-79401524 | Msa0428510:CDS |
| CAAGTCAACCCTTATAACAA+AGG | 0.591481 | 3_2:-79401632 | Msa0428510:CDS |
| GATCGTGGTAAATGTGGTGG+TGG | 0.591714 | 3_2:+79402851 | None:intergenic |
| ATTTGATCATCACTGCCCAT+GGG | 0.600506 | 3_2:-79402714 | Msa0428510:CDS |
| TCTGATGAGCGAAGGATCAA+CGG | 0.601917 | 3_2:+79404972 | None:intergenic |
| AAGTAAATGAACATAATGGA+AGG | 0.617930 | 3_2:+79400937 | None:intergenic |
| TATTAGTGCAATGGAAGCAG+GGG | 0.618463 | 3_2:+79401901 | None:intergenic |
| CGATAGGTTCTGATGAGCGA+AGG | 0.621597 | 3_2:+79404964 | None:intergenic |
| TCCTTGGATCGTGGTAAATG+TGG | 0.622600 | 3_2:+79402845 | None:intergenic |
| GGTTGGTCAGTGTATTGGAC+TGG | 0.624376 | 3_2:-79402693 | Msa0428510:intron |
| TGATTTAAGTGATACATCTG+TGG | 0.629494 | 3_2:-79401417 | Msa0428510:CDS |
| TCATAATTATCTGGGAGTGG+AGG | 0.634751 | 3_2:+79402905 | None:intergenic |
| AGTTTACAATGAGGCTGATG+AGG | 0.639849 | 3_2:-79401480 | Msa0428510:CDS |
| TATGATGCCAGTTTACAATG+AGG | 0.640744 | 3_2:-79401489 | Msa0428510:CDS |
| ATATCTAATCAGCACAAACC+AGG | 0.643061 | 3_2:-79401825 | Msa0428510:intron |
| AGCTTCTGATGTTCTTGACG+AGG | 0.657463 | 3_2:-79401297 | Msa0428510:CDS |
| ATGAACATAAAGGCAAAGCA+GGG | 0.663108 | 3_2:+79401997 | None:intergenic |
| TTGGATCGTGGTAAATGTGG+TGG | 0.667113 | 3_2:+79402848 | None:intergenic |
| CAATACACTGACCAACCCAT+GGG | 0.670201 | 3_2:+79402699 | None:intergenic |
| ATACTGAGCAATGAGAGCAG+CGG | 0.679203 | 3_2:+79402756 | None:intergenic |
| AGTGATAGTGGTAATGAACC+TGG | 0.679603 | 3_2:-79401242 | Msa0428510:CDS |
| TATGCCAGGATCTCTTCCTG+AGG | 0.701986 | 3_2:+79402946 | None:intergenic |
| AGTGGAGGATAAGAATTGCG+AGG | 0.702045 | 3_2:+79402920 | None:intergenic |
| CATGAGGATCAAGAACTCAG+AGG | 0.703307 | 3_2:-79401954 | Msa0428510:CDS |
| TTGCCGGCACCATTTGACGT+CGG | 0.703566 | 3_2:-79400860 | Msa0428510:three_prime_UTR |
| GAGCAATGAGAGCAGCGGGG+AGG | 0.704186 | 3_2:+79402761 | None:intergenic |
| CTCAGTATGTGATAACTGTG+TGG | 0.713980 | 3_2:-79402741 | Msa0428510:CDS |
| ACGAAGACGACGAATCAAAG+CGG | 0.721141 | 3_2:-79401271 | Msa0428510:CDS |
| ACTGAGCAATGAGAGCAGCG+GGG | 0.779041 | 3_2:+79402758 | None:intergenic |
| GATAGTGGTAATGAACCTGG+TGG | 0.817967 | 3_2:-79401239 | Msa0428510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATCCTTATATAATTA+AGG | + | chr3_2:79400966-79400985 | None:intergenic | 10.0% |
| !! | TTAAAATTACAAAGAAAAAT+AGG | - | chr3_2:79404709-79404728 | Msa0428510:CDS | 10.0% |
| !! | AGTTAAACCTTAATTATATA+AGG | - | chr3_2:79400956-79400975 | Msa0428510:three_prime_UTR | 15.0% |
| !!! | TTGTATAAAATTTTTGAAGT+AGG | + | chr3_2:79401494-79401513 | None:intergenic | 15.0% |
| !!! | CTTCAAAAATTTTATACAAT+CGG | - | chr3_2:79401495-79401514 | Msa0428510:CDS | 15.0% |
| !!! | TTTGTAATGAAATATTTTCT+TGG | - | chr3_2:79402649-79402668 | Msa0428510:intron | 15.0% |
| !! | ATATTATTCCATTTCTAATT+AGG | + | chr3_2:79403611-79403630 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTAGTTATTCTG+TGG | - | chr3_2:79404842-79404861 | Msa0428510:intron | 15.0% |
| !! | AAAAAAGTAAATGAACATAA+TGG | + | chr3_2:79404945-79404964 | None:intergenic | 15.0% |
| !!! | AATGCTACTTTTTATTTTTC+AGG | - | chr3_2:79401019-79401038 | Msa0428510:three_prime_UTR | 20.0% |
| !! | TGAATAAAAATGACTTACAA+AGG | + | chr3_2:79401222-79401241 | None:intergenic | 20.0% |
| !! | AAACTTCTTCTATTCTAAAT+AGG | + | chr3_2:79401575-79401594 | None:intergenic | 20.0% |
| !!! | TGTATAGCTAGATATTATTT+TGG | - | chr3_2:79401628-79401647 | Msa0428510:CDS | 20.0% |
| !! | CTAGATATAAATAAGATTTC+TGG | - | chr3_2:79401666-79401685 | Msa0428510:CDS | 20.0% |
| !! | ATATATAGTAGAAAAGATAG+TGG | - | chr3_2:79402229-79402248 | Msa0428510:intron | 20.0% |
| !! | AAACTATAAGAGAAACTATT+TGG | - | chr3_2:79402366-79402385 | Msa0428510:intron | 20.0% |
| !! | AGATTTAGATATTAATGAGT+TGG | - | chr3_2:79402391-79402410 | Msa0428510:intron | 20.0% |
| !!! | TTTTTTTTACCTGATTACTA+TGG | + | chr3_2:79402568-79402587 | None:intergenic | 20.0% |
| !! | ATTAAAATGATAGCACAAAT+TGG | + | chr3_2:79403248-79403267 | None:intergenic | 20.0% |
| !!! | CATATGAAAATTTTAGATAC+CGG | - | chr3_2:79404211-79404230 | Msa0428510:intron | 20.0% |
| !!! | GAATTTTTCTGAAATTATAG+AGG | + | chr3_2:79404678-79404697 | None:intergenic | 20.0% |
| !! | AAATTACAAAGAAAAATAGG+TGG | - | chr3_2:79404712-79404731 | Msa0428510:CDS | 20.0% |
| !! | AATTACAAAGAAAAATAGGT+GGG | - | chr3_2:79404713-79404732 | Msa0428510:CDS | 20.0% |
| !!! | TGATATAGTTCTTTTAAAAG+TGG | - | chr3_2:79404865-79404884 | Msa0428510:intron | 20.0% |
| !! | ACAAAAACAAAAGAAATGAA+GGG | + | chr3_2:79404968-79404987 | None:intergenic | 20.0% |
| !!! | ATTTTTCAGGTGTTTTTTCT+TGG | - | chr3_2:79401032-79401051 | Msa0428510:three_prime_UTR | 25.0% |
| ! | GTAAATATAGATTTCACATC+AGG | + | chr3_2:79401077-79401096 | None:intergenic | 25.0% |
| ! | TTCATAACTTGAATCCATTA+GGG | - | chr3_2:79401389-79401408 | Msa0428510:CDS | 25.0% |
| ! | ATGAGTTAAGAATAACTAAC+AGG | + | chr3_2:79401451-79401470 | None:intergenic | 25.0% |
| ! | TAGTTATTCTTAACTCATCA+TGG | - | chr3_2:79401453-79401472 | Msa0428510:CDS | 25.0% |
| ! | AGTTATTCTTAACTCATCAT+GGG | - | chr3_2:79401454-79401473 | Msa0428510:CDS | 25.0% |
| ! | AATAGAAGAAGTTTAGCATT+TGG | - | chr3_2:79401581-79401600 | Msa0428510:CDS | 25.0% |
| ! | TTAGCATTTGGACAAATTTA+TGG | - | chr3_2:79401593-79401612 | Msa0428510:CDS | 25.0% |
| ! | TATATCTAGCTAAGTATACT+TGG | + | chr3_2:79401655-79401674 | None:intergenic | 25.0% |
| !!! | TAGAAAAGATAGTGGAAAAT+AGG | - | chr3_2:79402237-79402256 | Msa0428510:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTCAT+AGG | + | chr3_2:79402362-79402381 | None:intergenic | 25.0% |
| !! | TATTGTTGTTGTAAACTCTA+TGG | - | chr3_2:79402473-79402492 | Msa0428510:intron | 25.0% |
| !! | TGAAATATTTTCTTGGTGAA+TGG | - | chr3_2:79402656-79402675 | Msa0428510:intron | 25.0% |
| !!! | GAGGTTCAACTATTTTATTT+TGG | + | chr3_2:79403493-79403512 | None:intergenic | 25.0% |
| ! | ATTTACCTCCTAATTAGAAA+TGG | - | chr3_2:79403600-79403619 | Msa0428510:intron | 25.0% |
| ! | TTATTCCATTTCTAATTAGG+AGG | + | chr3_2:79403608-79403627 | None:intergenic | 25.0% |
| !! | TTGTTTCTTTGCATGTATAT+TGG | - | chr3_2:79403649-79403668 | Msa0428510:intron | 25.0% |
| ! | TGTGTATATTATTAGTGCAA+TGG | + | chr3_2:79403986-79404005 | None:intergenic | 25.0% |
| ! | ATAGTAAGTAGTCTCATTTA+AGG | + | chr3_2:79404107-79404126 | None:intergenic | 25.0% |
| ! | ACAAAAGGAACAATCATTAA+CGG | + | chr3_2:79404176-79404195 | None:intergenic | 25.0% |
| !!! | CTGAAATTGTTTTTGGATAT+GGG | + | chr3_2:79404309-79404328 | None:intergenic | 25.0% |
| ! | ATTACAAAGAAAAATAGGTG+GGG | - | chr3_2:79404714-79404733 | Msa0428510:CDS | 25.0% |
| !!! | TCATTGTTTTGGTCAAAAAA+TGG | - | chr3_2:79404785-79404804 | Msa0428510:CDS | 25.0% |
| ! | AAGATGATGAATAGAAATTG+TGG | - | chr3_2:79404907-79404926 | Msa0428510:intron | 25.0% |
| !! | AAGTAAATGAACATAATGGA+AGG | + | chr3_2:79404941-79404960 | None:intergenic | 25.0% |
| ! | GACAAAAACAAAAGAAATGA+AGG | + | chr3_2:79404969-79404988 | None:intergenic | 25.0% |
| ATTGAATATCCAGAGTGATT+AGG | + | chr3_2:79401173-79401192 | None:intergenic | 30.0% | |
| TATTATTGTTGTCGATGTGT+CGG | - | chr3_2:79401346-79401365 | Msa0428510:CDS | 30.0% | |
| CTTCATAACTTGAATCCATT+AGG | - | chr3_2:79401388-79401407 | Msa0428510:CDS | 30.0% | |
| ! | ATACAATCGGTTAGTTGAAA+AGG | - | chr3_2:79401508-79401527 | Msa0428510:CDS | 30.0% |
| TGATAACTGATAAGACTAGA+CGG | - | chr3_2:79401756-79401775 | Msa0428510:intron | 30.0% | |
| AGTTAGATTACAAGAGATAG+AGG | - | chr3_2:79402332-79402351 | Msa0428510:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr3_2:79402403-79402422 | Msa0428510:intron | 30.0% |
| ! | TAGCTATATCCAACTTTTAG+AGG | - | chr3_2:79402715-79402734 | Msa0428510:CDS | 30.0% |
| ! | AGCTATATCCAACTTTTAGA+GGG | - | chr3_2:79402716-79402735 | Msa0428510:CDS | 30.0% |
| ! | CATAATTACCCTCTAAAAGT+TGG | + | chr3_2:79402727-79402746 | None:intergenic | 30.0% |
| ! | TAACGTGTTTAGGATTAAAG+TGG | + | chr3_2:79402874-79402893 | None:intergenic | 30.0% |
| CACTTCCATCATAATTATCT+GGG | + | chr3_2:79402981-79403000 | None:intergenic | 30.0% | |
| TCACTTCCATCATAATTATC+TGG | + | chr3_2:79402982-79403001 | None:intergenic | 30.0% | |
| ! | TCCTGAACAAACAATTTTAG+TGG | - | chr3_2:79403332-79403351 | Msa0428510:intron | 30.0% |
| TCCACTAAAATTGTTTGTTC+AGG | + | chr3_2:79403336-79403355 | None:intergenic | 30.0% | |
| ! | AACATTGACTAAGTTGTCAA+AGG | - | chr3_2:79403355-79403374 | Msa0428510:intron | 30.0% |
| ! | ACATTGACTAAGTTGTCAAA+GGG | - | chr3_2:79403356-79403375 | Msa0428510:intron | 30.0% |
| CCTCTTGTGTAAAAAAAACA+GGG | - | chr3_2:79403448-79403467 | Msa0428510:intron | 30.0% | |
| ATTGACAGCTTAGTCAATAA+GGG | + | chr3_2:79403559-79403578 | None:intergenic | 30.0% | |
| AATTGACAGCTTAGTCAATA+AGG | + | chr3_2:79403560-79403579 | None:intergenic | 30.0% | |
| GTCAATTTACTGTGATCAAA+TGG | - | chr3_2:79403573-79403592 | Msa0428510:intron | 30.0% | |
| CATGTACATATAAAGCAAAG+AGG | + | chr3_2:79403811-79403830 | None:intergenic | 30.0% | |
| CTCTTTGCTTTATATGTACA+TGG | - | chr3_2:79403809-79403828 | Msa0428510:intron | 30.0% | |
| AAACAAACATGTAGTAGAAC+CGG | + | chr3_2:79403849-79403868 | None:intergenic | 30.0% | |
| !! | TTGTGCTGATTAGATATGTA+TGG | + | chr3_2:79404047-79404066 | None:intergenic | 30.0% |
| GTAAGAAAAACGAACTAGAA+AGG | + | chr3_2:79404151-79404170 | None:intergenic | 30.0% | |
| AAGTCAACCCTTATAACAAA+GGG | - | chr3_2:79404244-79404263 | Msa0428510:intron | 30.0% | |
| ! | CAATTAGCCCTTTGTTATAA+GGG | + | chr3_2:79404254-79404273 | None:intergenic | 30.0% |
| ! | TCAATTAGCCCTTTGTTATA+AGG | + | chr3_2:79404255-79404274 | None:intergenic | 30.0% |
| !!! | ATTGTTTTTGGATATGGGAA+TGG | + | chr3_2:79404304-79404323 | None:intergenic | 30.0% |
| !!! | CCTGAAATTGTTTTTGGATA+TGG | + | chr3_2:79404310-79404329 | None:intergenic | 30.0% |
| CCATATCCAAAAACAATTTC+AGG | - | chr3_2:79404307-79404326 | Msa0428510:intron | 30.0% | |
| ATTGTAAACTGGCATCATAA+GGG | + | chr3_2:79404385-79404404 | None:intergenic | 30.0% | |
| GGAAAAAGATTATAAAGACG+AGG | - | chr3_2:79404419-79404438 | Msa0428510:intron | 30.0% | |
| GATTATAAAGACGAGGAATA+TGG | - | chr3_2:79404426-79404445 | Msa0428510:intron | 30.0% | |
| TGATTTAAGTGATACATCTG+TGG | - | chr3_2:79404458-79404477 | Msa0428510:intron | 30.0% | |
| TTACAAAGAAAAATAGGTGG+GGG | - | chr3_2:79404715-79404734 | Msa0428510:CDS | 30.0% | |
| TTGTTATGTTCGGATTTGAT+AGG | - | chr3_2:79404745-79404764 | Msa0428510:CDS | 30.0% | |
| TGTTATGTTCGGATTTGATA+GGG | - | chr3_2:79404746-79404765 | Msa0428510:CDS | 30.0% | |
| ! | TTTTGGTCAAAAAATGGCAT+TGG | - | chr3_2:79404791-79404810 | Msa0428510:CDS | 30.0% |
| !!! | TTTCAGGTGTTTTTTCTTGG+AGG | - | chr3_2:79401035-79401054 | Msa0428510:three_prime_UTR | 35.0% |
| !!! | TTCAGGTGTTTTTTCTTGGA+GGG | - | chr3_2:79401036-79401055 | Msa0428510:three_prime_UTR | 35.0% |
| ! | GATGATTTTCCTAATCACTC+TGG | - | chr3_2:79401161-79401180 | Msa0428510:three_prime_UTR | 35.0% |
| ATAATTCAATGTGTCAGCGT+CGG | + | chr3_2:79401311-79401330 | None:intergenic | 35.0% | |
| ! | TGGATTCAAGTTATGAAGCA+CGG | + | chr3_2:79401386-79401405 | None:intergenic | 35.0% |
| ! | TACTTAAAGCACTACCCTAA+TGG | + | chr3_2:79401406-79401425 | None:intergenic | 35.0% |
| ! | ATTAGGGTAGTGCTTTAAGT+AGG | - | chr3_2:79401405-79401424 | Msa0428510:CDS | 35.0% |
| GTTAAGAATAACTAACAGGC+AGG | + | chr3_2:79401447-79401466 | None:intergenic | 35.0% | |
| ! | AGATTTCTGGATATTGCTTG+TGG | - | chr3_2:79401679-79401698 | Msa0428510:intron | 35.0% |
| GATAACTGATAAGACTAGAC+GGG | - | chr3_2:79401757-79401776 | Msa0428510:intron | 35.0% | |
| !! | AGATAGTGGAAAATAGGCTT+AGG | - | chr3_2:79402243-79402262 | Msa0428510:intron | 35.0% |
| AAAATAGGCTTAGGTGGTTT+GGG | - | chr3_2:79402252-79402271 | Msa0428510:intron | 35.0% | |
| AGTAAGAAGAGTAGATCAGA+TGG | - | chr3_2:79402304-79402323 | Msa0428510:intron | 35.0% | |
| TACGCATCGTAAACCATATT+TGG | + | chr3_2:79402419-79402438 | None:intergenic | 35.0% | |
| GGACTACTTGTGTTAAGAAA+TGG | - | chr3_2:79402494-79402513 | Msa0428510:intron | 35.0% | |
| TTGTGTTAAGAAATGGAGCT+AGG | - | chr3_2:79402501-79402520 | Msa0428510:intron | 35.0% | |
| TGTGTTAAGAAATGGAGCTA+GGG | - | chr3_2:79402502-79402521 | Msa0428510:intron | 35.0% | |
| AAAATGAAGCGAAATGTGTC+AGG | - | chr3_2:79402536-79402555 | Msa0428510:intron | 35.0% | |
| !! | AGGTTTTGACCATAGTAATC+AGG | - | chr3_2:79402556-79402575 | Msa0428510:intron | 35.0% |
| AGTTGAGATAACTTCTTGCA+TGG | + | chr3_2:79402616-79402635 | None:intergenic | 35.0% | |
| GCAATACATGTAACGTGTTT+AGG | + | chr3_2:79402884-79402903 | None:intergenic | 35.0% | |
| TCCAAGGAAGTAATTGTCAA+TGG | - | chr3_2:79403045-79403064 | Msa0428510:intron | 35.0% | |
| TCCATTGACAATTACTTCCT+TGG | + | chr3_2:79403049-79403068 | None:intergenic | 35.0% | |
| ! | CATTGACTAAGTTGTCAAAG+GGG | - | chr3_2:79403357-79403376 | Msa0428510:intron | 35.0% |
| GTTGTTGTCATGTGATTGAA+AGG | - | chr3_2:79403400-79403419 | Msa0428510:intron | 35.0% | |
| GCCTCTTGTGTAAAAAAAAC+AGG | - | chr3_2:79403447-79403466 | Msa0428510:intron | 35.0% | |
| !!! | CCCTGTTTTTTTTACACAAG+AGG | + | chr3_2:79403451-79403470 | None:intergenic | 35.0% |
| ATGAACATAAAGGCAAAGCA+GGG | + | chr3_2:79403881-79403900 | None:intergenic | 35.0% | |
| ! | AGCAAAAGGCATGAACATAA+AGG | + | chr3_2:79403891-79403910 | None:intergenic | 35.0% |
| ! | TTTATGTTCATGCCTTTTGC+TGG | - | chr3_2:79403890-79403909 | Msa0428510:intron | 35.0% |
| ! | TTATGTTCATGCCTTTTGCT+GGG | - | chr3_2:79403891-79403910 | Msa0428510:intron | 35.0% |
| TTATTAGTGCAATGGAAGCA+GGG | + | chr3_2:79403978-79403997 | None:intergenic | 35.0% | |
| ATTATTAGTGCAATGGAAGC+AGG | + | chr3_2:79403979-79403998 | None:intergenic | 35.0% | |
| TATACACATTCATTGCTGTC+TGG | - | chr3_2:79403998-79404017 | Msa0428510:intron | 35.0% | |
| ATATCTAATCAGCACAAACC+AGG | - | chr3_2:79404050-79404069 | Msa0428510:intron | 35.0% | |
| AGTTAAGTAGTGTTCAAACC+TGG | + | chr3_2:79404071-79404090 | None:intergenic | 35.0% | |
| ! | GTAGTCTCATTTAAGGTCAA+GGG | + | chr3_2:79404100-79404119 | None:intergenic | 35.0% |
| ! | AGTAGTCTCATTTAAGGTCA+AGG | + | chr3_2:79404101-79404120 | None:intergenic | 35.0% |
| TAGACTGCACATAGAACAAA+AGG | + | chr3_2:79404191-79404210 | None:intergenic | 35.0% | |
| !! | TGTTATAAGGGTTGACTTGT+CGG | + | chr3_2:79404242-79404261 | None:intergenic | 35.0% |
| CAAGTCAACCCTTATAACAA+AGG | - | chr3_2:79404243-79404262 | Msa0428510:intron | 35.0% | |
| ! | CTTGGACCTGAAATTGTTTT+TGG | + | chr3_2:79404316-79404335 | None:intergenic | 35.0% |
| ! | CAAAAACAATTTCAGGTCCA+AGG | - | chr3_2:79404314-79404333 | Msa0428510:intron | 35.0% |
| !!! | GATGATTCTGTTGGTTCTTT+TGG | + | chr3_2:79404342-79404361 | None:intergenic | 35.0% |
| CTTTGTCTAGATGATTCTGT+TGG | + | chr3_2:79404351-79404370 | None:intergenic | 35.0% | |
| ACAGAATCATCTAGACAAAG+AGG | - | chr3_2:79404351-79404370 | Msa0428510:intron | 35.0% | |
| CATTGTAAACTGGCATCATA+AGG | + | chr3_2:79404386-79404405 | None:intergenic | 35.0% | |
| TATGATGCCAGTTTACAATG+AGG | - | chr3_2:79404386-79404405 | Msa0428510:intron | 35.0% | |
| AGTGATACATCTGTGGATTT+AGG | - | chr3_2:79404465-79404484 | Msa0428510:intron | 35.0% | |
| TACAAAGAAAAATAGGTGGG+GGG | - | chr3_2:79404716-79404735 | Msa0428510:CDS | 35.0% | |
| ATTCTCAGAGCAACAGTATA+AGG | + | chr3_2:79404991-79405010 | None:intergenic | 35.0% | |
| !! | TGCTCTGAGAATATAATTGC+CGG | - | chr3_2:79404999-79405018 | Msa0428510:CDS | 35.0% |
| TCAAACACAAATGCATCCTC+CGG | - | chr3_2:79400853-79400872 | Msa0428510:three_prime_UTR | 40.0% | |
| CTTGGAGGGAGGTTTATATT+TGG | - | chr3_2:79401050-79401069 | Msa0428510:three_prime_UTR | 40.0% | |
| AAGCACAGAAAACAGCAACA+GGG | + | chr3_2:79401121-79401140 | None:intergenic | 40.0% | |
| AAAGCACAGAAAACAGCAAC+AGG | + | chr3_2:79401122-79401141 | None:intergenic | 40.0% | |
| ATAACTAACAGGCAGGTCAT+AGG | + | chr3_2:79401440-79401459 | None:intergenic | 40.0% | |
| ! | GGTTAGTTGAAAAGGACTTG+AGG | - | chr3_2:79401516-79401535 | Msa0428510:CDS | 40.0% |
| TAGTGGAAAATAGGCTTAGG+TGG | - | chr3_2:79402246-79402265 | Msa0428510:intron | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | - | chr3_2:79402251-79402270 | Msa0428510:intron | 40.0% | |
| AAGAAGAGTAGATCAGATGG+AGG | - | chr3_2:79402307-79402326 | Msa0428510:intron | 40.0% | |
| CGTAATTTGATCCATGTAGC+CGG | - | chr3_2:79402435-79402454 | Msa0428510:intron | 40.0% | |
| ACAACAATATCCCACCAAGT+GGG | + | chr3_2:79402462-79402481 | None:intergenic | 40.0% | |
| AACAACAATATCCCACCAAG+TGG | + | chr3_2:79402463-79402482 | None:intergenic | 40.0% | |
| AACACGTTACATGTATTGCC+AGG | - | chr3_2:79402885-79402904 | Msa0428510:CDS | 40.0% | |
| GTATAAGAGCAATCAGAACC+TGG | + | chr3_2:79402906-79402925 | None:intergenic | 40.0% | |
| ATTGCTCTTATACTGACCTC+AGG | - | chr3_2:79402913-79402932 | Msa0428510:CDS | 40.0% | |
| TCATAATTATCTGGGAGTGG+AGG | + | chr3_2:79402973-79402992 | None:intergenic | 40.0% | |
| CCATCATAATTATCTGGGAG+TGG | + | chr3_2:79402976-79402995 | None:intergenic | 40.0% | |
| CCACTCCCAGATAATTATGA+TGG | - | chr3_2:79402973-79402992 | Msa0428510:intron | 40.0% | |
| ACAATTACTTCCTTGGATCG+TGG | + | chr3_2:79403042-79403061 | None:intergenic | 40.0% | |
| CTCAGTATGTGATAACTGTG+TGG | - | chr3_2:79403134-79403153 | Msa0428510:intron | 40.0% | |
| ATTTGATCATCACTGCCCAT+GGG | - | chr3_2:79403161-79403180 | Msa0428510:intron | 40.0% | |
| AAAATAGTTGAACCTCGTCC+CGG | - | chr3_2:79403497-79403516 | Msa0428510:intron | 40.0% | |
| TTCCCAAACATCACACTCAT+TGG | - | chr3_2:79403686-79403705 | Msa0428510:intron | 40.0% | |
| GACCAATGAGTGTGATGTTT+GGG | + | chr3_2:79403691-79403710 | None:intergenic | 40.0% | |
| TGACCAATGAGTGTGATGTT+TGG | + | chr3_2:79403692-79403711 | None:intergenic | 40.0% | |
| CATGAACATAAAGGCAAAGC+AGG | + | chr3_2:79403882-79403901 | None:intergenic | 40.0% | |
| CATGATGTAAACCCAGCAAA+AGG | + | chr3_2:79403905-79403924 | None:intergenic | 40.0% | |
| TTTGCTGGGTTTACATCATG+AGG | - | chr3_2:79403905-79403924 | Msa0428510:intron | 40.0% | |
| TATTAGTGCAATGGAAGCAG+GGG | + | chr3_2:79403977-79403996 | None:intergenic | 40.0% | |
| ! | TTCATTGCTGTCTGGTTTGT+TGG | - | chr3_2:79404006-79404025 | Msa0428510:intron | 40.0% |
| !!! | TGTTGGTTCTTTTGGAACCT+TGG | + | chr3_2:79404334-79404353 | None:intergenic | 40.0% |
| TCATCAGCCTCATTGTAAAC+TGG | + | chr3_2:79404396-79404415 | None:intergenic | 40.0% | |
| AGTTTACAATGAGGCTGATG+AGG | - | chr3_2:79404395-79404414 | Msa0428510:intron | 40.0% | |
| CAGTATGCTTCACACAGAAA+CGG | - | chr3_2:79404488-79404507 | Msa0428510:intron | 40.0% | |
| AGTATGCTTCACACAGAAAC+GGG | - | chr3_2:79404489-79404508 | Msa0428510:intron | 40.0% | |
| GACAAGTTGCTTCCTTTCTA+AGG | - | chr3_2:79404517-79404536 | Msa0428510:intron | 40.0% | |
| GGAACAAAGCAGCAGAAAAT+GGG | - | chr3_2:79404551-79404570 | Msa0428510:intron | 40.0% | |
| AGGTTCATTACCACTATCAC+TGG | + | chr3_2:79404634-79404653 | None:intergenic | 40.0% | |
| !! | AGTGATAGTGGTAATGAACC+TGG | - | chr3_2:79404633-79404652 | Msa0428510:intron | 40.0% |
| TCGGATTTGATAGGGAAGTA+CGG | - | chr3_2:79404754-79404773 | Msa0428510:CDS | 40.0% | |
| ! | CGGCTTGTGTTTCATTGTTT+TGG | - | chr3_2:79404774-79404793 | Msa0428510:CDS | 40.0% |
| CGAAGGATCAACGGTATTTC+CGG | + | chr3_2:79400897-79400916 | None:intergenic | 45.0% | |
| TCTGATGAGCGAAGGATCAA+CGG | + | chr3_2:79400906-79400925 | None:intergenic | 45.0% | |
| ATTTCCTTTCCAAGCGCGAT+AGG | + | chr3_2:79400930-79400949 | None:intergenic | 45.0% | |
| !!! | AGGTGTTTTTTCTTGGAGGG+AGG | - | chr3_2:79401039-79401058 | Msa0428510:three_prime_UTR | 45.0% |
| AGCACAGAAAACAGCAACAG+GGG | + | chr3_2:79401120-79401139 | None:intergenic | 45.0% | |
| CAACAATATCCCACCAAGTG+GGG | + | chr3_2:79402461-79402480 | None:intergenic | 45.0% | |
| GTTAAGAAATGGAGCTAGGG+AGG | - | chr3_2:79402505-79402524 | Msa0428510:intron | 45.0% | |
| AGTGGAGGATAAGAATTGCG+AGG | + | chr3_2:79402958-79402977 | None:intergenic | 45.0% | |
| TTGGATCGTGGTAAATGTGG+TGG | + | chr3_2:79403030-79403049 | None:intergenic | 45.0% | |
| ACCACATTTACCACGATCCA+AGG | - | chr3_2:79403029-79403048 | Msa0428510:intron | 45.0% | |
| TCCTTGGATCGTGGTAAATG+TGG | + | chr3_2:79403033-79403052 | None:intergenic | 45.0% | |
| ATACTGAGCAATGAGAGCAG+CGG | + | chr3_2:79403122-79403141 | None:intergenic | 45.0% | |
| GATTTGATCATCACTGCCCA+TGG | - | chr3_2:79403160-79403179 | Msa0428510:intron | 45.0% | |
| CAATACACTGACCAACCCAT+GGG | + | chr3_2:79403179-79403198 | None:intergenic | 45.0% | |
| AAGTTGTCAAAGGGGAGTCT+TGG | - | chr3_2:79403365-79403384 | Msa0428510:intron | 45.0% | |
| AAGGTCACAGATTCTAGTCC+TGG | - | chr3_2:79403419-79403438 | Msa0428510:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_2:79403440-79403459 | None:intergenic | 45.0% |
| CTTAGTCAATAAGGGAAGCC+CGG | + | chr3_2:79403551-79403570 | None:intergenic | 45.0% | |
| CATGAGGATCAAGAACTCAG+AGG | - | chr3_2:79403921-79403940 | Msa0428510:intron | 45.0% | |
| ACTCAGAGGAGATATCGATC+TGG | - | chr3_2:79403935-79403954 | Msa0428510:intron | 45.0% | |
| !! | ATTGCTGTCTGGTTTGTTGG+AGG | - | chr3_2:79404009-79404028 | Msa0428510:intron | 45.0% |
| TTACAATGAGGCTGATGAGG+TGG | - | chr3_2:79404398-79404417 | Msa0428510:intron | 45.0% | |
| !! | CTTTCTAAGGCAGTCCTTGT+GGG | - | chr3_2:79404530-79404549 | Msa0428510:intron | 45.0% |
| GGGAACAAAGCAGCAGAAAA+TGG | - | chr3_2:79404550-79404569 | Msa0428510:intron | 45.0% | |
| AGCTTCTGATGTTCTTGACG+AGG | - | chr3_2:79404578-79404597 | Msa0428510:intron | 45.0% | |
| ACGAAGACGACGAATCAAAG+CGG | - | chr3_2:79404604-79404623 | Msa0428510:intron | 45.0% | |
| ! | GATAGTGGTAATGAACCTGG+TGG | - | chr3_2:79404636-79404655 | Msa0428510:intron | 45.0% |
| !! | GTTTTTGTTGAGTTGCCACC+AGG | + | chr3_2:79404654-79404673 | None:intergenic | 45.0% |
| !! | GGGGCAGAGTTTGTTATGTT+CGG | - | chr3_2:79404735-79404754 | Msa0428510:CDS | 45.0% |
| !! | AATATAATAAAAAATAGTAA+TGG | - | chr3_2:79403626-79403645 | Msa0428510:intron | 5.0% |
| ! | CGATAGGTTCTGATGAGCGA+AGG | + | chr3_2:79400914-79400933 | None:intergenic | 50.0% |
| TCATCAGAACCTATCGCGCT+TGG | - | chr3_2:79400918-79400937 | Msa0428510:three_prime_UTR | 50.0% | |
| AGAACCTATCGCGCTTGGAA+AGG | - | chr3_2:79400923-79400942 | Msa0428510:three_prime_UTR | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_2:79401801-79401820 | Msa0428510:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_2:79401801-79401820 | Msa0428510:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+TGG | - | chr3_2:79401802-79401821 | Msa0428510:intron | 50.0% | |
| TATGCCAGGATCTCTTCCTG+AGG | + | chr3_2:79402932-79402951 | None:intergenic | 50.0% | |
| GATCGTGGTAAATGTGGTGG+TGG | + | chr3_2:79403027-79403046 | None:intergenic | 50.0% | |
| TACTGAGCAATGAGAGCAGC+GGG | + | chr3_2:79403121-79403140 | None:intergenic | 50.0% | |
| CCAATACACTGACCAACCCA+TGG | + | chr3_2:79403180-79403199 | None:intergenic | 50.0% | |
| !! | CCATGGGTTGGTCAGTGTAT+TGG | - | chr3_2:79403177-79403196 | Msa0428510:intron | 50.0% |
| ! | GGTTGGTCAGTGTATTGGAC+TGG | - | chr3_2:79403182-79403201 | Msa0428510:intron | 50.0% |
| CTAAAGCTCCTGCATACGCA+GGG | + | chr3_2:79403524-79403543 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | + | chr3_2:79403525-79403544 | None:intergenic | 50.0% | |
| ! | ATGCAGGAGCTTTAGTGCAC+CGG | - | chr3_2:79403529-79403548 | Msa0428510:intron | 50.0% |
| !! | GGTTGACTTGTCGGTCATAC+CGG | + | chr3_2:79404233-79404252 | None:intergenic | 50.0% |
| CCACAAGGACTGCCTTAGAA+AGG | + | chr3_2:79404532-79404551 | None:intergenic | 50.0% | |
| !! | CCTTTCTAAGGCAGTCCTTG+TGG | - | chr3_2:79404529-79404548 | Msa0428510:intron | 50.0% |
| !! | TCTGCTGCTTTGTTCCCACA+AGG | + | chr3_2:79404547-79404566 | None:intergenic | 50.0% |
| AAGCGGATCACCAGTGATAG+TGG | - | chr3_2:79404621-79404640 | Msa0428510:intron | 50.0% | |
| TTTCCGGCTACTGAGTTCGC+CGG | + | chr3_2:79400881-79400900 | None:intergenic | 55.0% | |
| AATATCCCACCAAGTGGGGC+CGG | + | chr3_2:79402457-79402476 | None:intergenic | 55.0% | |
| CTGACCTCAGGAAGAGATCC+TGG | - | chr3_2:79402925-79402944 | Msa0428510:CDS | 55.0% | |
| ! | GAATTGCGAGGCACTATGCC+AGG | + | chr3_2:79402946-79402965 | None:intergenic | 55.0% |
| ACTGAGCAATGAGAGCAGCG+GGG | + | chr3_2:79403120-79403139 | None:intergenic | 55.0% | |
| GATCATCACTGCCCATGGGT+TGG | - | chr3_2:79403165-79403184 | Msa0428510:intron | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+GGG | - | chr3_2:79403530-79403549 | Msa0428510:intron | 55.0% |
| CATGGCGACAGCGCAATTAC+CGG | - | chr3_2:79403827-79403846 | Msa0428510:intron | 55.0% | |
| TTGCCGGCACCATTTGACGT+CGG | - | chr3_2:79405015-79405034 | Msa0428510:CDS | 55.0% | |
| ATGCCGACGTCAAATGGTGC+CGG | + | chr3_2:79405021-79405040 | None:intergenic | 55.0% | |
| ACAAATGCATCCTCCGGCGC+CGG | - | chr3_2:79400859-79400878 | Msa0428510:three_prime_UTR | 60.0% | |
| TCCATGTAGCCGGCCCCACT+TGG | - | chr3_2:79402445-79402464 | Msa0428510:intron | 65.0% | |
| ACCAAGTGGGGCCGGCTACA+TGG | + | chr3_2:79402449-79402468 | None:intergenic | 65.0% | |
| ATGTAGCCGGCCCCACTTGG+TGG | - | chr3_2:79402448-79402467 | Msa0428510:intron | 65.0% | |
| TGTAGCCGGCCCCACTTGGT+GGG | - | chr3_2:79402449-79402468 | Msa0428510:intron | 65.0% | |
| GAGCAATGAGAGCAGCGGGG+AGG | + | chr3_2:79403117-79403136 | None:intergenic | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | + | chr3_2:79403518-79403537 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | + | chr3_2:79403519-79403538 | None:intergenic | 65.0% | |
| GCTACTGAGTTCGCCGGCGC+CGG | + | chr3_2:79400875-79400894 | None:intergenic | 70.0% | |
| ! | GCGCCGGCGAACTCAGTAGC+CGG | - | chr3_2:79400875-79400894 | Msa0428510:three_prime_UTR | 70.0% |
| CATACGCAGGGTCCGGGACG+AGG | + | chr3_2:79403512-79403531 | None:intergenic | 70.0% | |
| GTCCCGGACCCTGCGTATGC+AGG | - | chr3_2:79403513-79403532 | Msa0428510:intron | 70.0% | |
| ! | ACTGAGTTCGCCGGCGCCGG+AGG | + | chr3_2:79400872-79400891 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79400852 | 79405045 | 79400852 | ID=Msa0428510;Name=Msa0428510 |
| chr3_2 | mRNA | 79400852 | 79405045 | 79400852 | ID=Msa0428510-mRNA-1;Parent=Msa0428510;Name=Msa0428510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=11|1|1|1|1|1|5|362|426 |
| chr3_2 | exon | 79400852 | 79401690 | 79400852 | ID=Msa0428510-mRNA-1:exon:21437;Parent=Msa0428510-mRNA-1 |
| chr3_2 | exon | 79401826 | 79402059 | 79401826 | ID=Msa0428510-mRNA-1:exon:21436;Parent=Msa0428510-mRNA-1 |
| chr3_2 | exon | 79402694 | 79402990 | 79402694 | ID=Msa0428510-mRNA-1:exon:21435;Parent=Msa0428510-mRNA-1 |
| chr3_2 | exon | 79404674 | 79404856 | 79404674 | ID=Msa0428510-mRNA-1:exon:21434;Parent=Msa0428510-mRNA-1 |
| chr3_2 | exon | 79404945 | 79405045 | 79404945 | ID=Msa0428510-mRNA-1:exon:21433;Parent=Msa0428510-mRNA-1 |
| chr3_2 | five_prime_UTR | 79405035 | 79405045 | 79405035 | ID=Msa0428510-mRNA-1:five_prime_utr;Parent=Msa0428510-mRNA-1 |
| chr3_2 | CDS | 79404945 | 79405034 | 79404945 | ID=Msa0428510-mRNA-1:cds;Parent=Msa0428510-mRNA-1 |
| chr3_2 | CDS | 79404674 | 79404856 | 79404674 | ID=Msa0428510-mRNA-1:cds;Parent=Msa0428510-mRNA-1 |
| chr3_2 | CDS | 79402694 | 79402990 | 79402694 | ID=Msa0428510-mRNA-1:cds;Parent=Msa0428510-mRNA-1 |
| chr3_2 | CDS | 79401826 | 79402059 | 79401826 | ID=Msa0428510-mRNA-1:cds;Parent=Msa0428510-mRNA-1 |
| chr3_2 | CDS | 79401214 | 79401690 | 79401214 | ID=Msa0428510-mRNA-1:cds;Parent=Msa0428510-mRNA-1 |
| chr3_2 | three_prime_UTR | 79400852 | 79401213 | 79400852 | ID=Msa0428510-mRNA-1:three_prime_utr;Parent=Msa0428510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
