AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766100 MtrunA17_Chr5g0417141 97.251 291 3 2 1 287 1 290 0.0 568
Msa0766100 MtrunA17_Chr8g0361661 74.227 291 64 7 1 287 1 284 6.33e-123 352
Msa0766100 MtrunA17_Chr1g0208551 42.857 196 105 4 63 255 55 246 1.32e-55 180
Msa0766100 MtrunA17_Chr7g0251421 37.981 208 118 6 65 270 14 212 3.39e-44 149
Msa0766100 MtrunA17_Chr7g0269921 40.642 187 93 8 67 247 20 194 1.05e-37 132
Msa0766100 MtrunA17_Chr1g0194751 40.571 175 96 5 56 225 9 180 2.48e-30 114
Msa0766100 MtrunA17_Chr7g0217321 31.073 177 108 6 63 238 31 194 2.12e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766100 AT2G02960.3 76.471 221 48 3 57 276 33 250 1.45e-105 308
Msa0766100 AT2G02960.2 76.471 221 48 3 57 276 33 250 1.45e-105 308
Msa0766100 AT2G02960.6 76.471 221 48 3 57 276 33 250 1.45e-105 308
Msa0766100 AT2G02960.4 76.471 221 48 3 57 276 33 250 1.45e-105 308
Msa0766100 AT2G02960.1 76.471 221 48 3 57 276 33 250 1.45e-105 308
Msa0766100 AT3G47550.3 64.931 288 91 6 1 282 1 284 9.74e-104 304
Msa0766100 AT3G47550.6 64.931 288 91 6 1 282 1 284 9.74e-104 304
Msa0766100 AT1G14260.2 63.019 265 83 5 4 267 5 255 5.24e-89 266
Msa0766100 AT1G14260.1 63.019 265 83 5 4 267 5 255 5.24e-89 266
Msa0766100 AT1G14260.3 63.019 265 83 5 4 267 5 255 5.24e-89 266
Msa0766100 AT5G62460.3 74.561 228 48 4 56 275 80 305 8.93e-89 267
Msa0766100 AT5G62460.1 74.123 228 49 4 56 275 67 292 9.53e-89 267
Msa0766100 AT5G62460.2 74.123 228 49 4 56 275 67 292 9.53e-89 267
Msa0766100 AT3G47550.2 64.344 244 79 5 1 240 1 240 2.34e-86 258
Msa0766100 AT2G02960.5 78.082 146 30 1 57 202 33 176 5.22e-69 215
Msa0766100 AT3G47550.1 60.811 222 79 5 1 218 1 218 1.52e-68 213
Msa0766100 AT2G01275.2 39.344 244 127 7 1 242 1 225 1.54e-50 167
Msa0766100 AT2G01275.4 39.344 244 127 7 1 242 1 225 1.54e-50 167
Msa0766100 AT2G01275.1 39.344 244 127 7 1 242 1 225 1.54e-50 167
Msa0766100 AT2G01275.3 39.344 244 127 7 1 242 27 251 1.75e-50 168
Msa0766100 AT2G01275.5 39.344 244 127 7 1 242 27 251 1.75e-50 168
Msa0766100 AT5G38070.1 36.255 251 135 6 1 249 1 228 4.07e-41 143
Msa0766100 AT4G02075.3 37.629 194 103 4 56 247 9 186 1.14e-38 135
Msa0766100 AT4G02075.1 37.629 194 103 4 56 247 9 186 1.46e-38 135
Msa0766100 AT1G02610.1 36.066 183 106 4 67 247 20 193 8.75e-33 120
Msa0766100 AT1G02610.2 36.066 183 106 4 67 247 20 193 1.28e-32 119
Msa0766100 AT4G02075.2 38.596 171 84 5 56 221 9 163 1.93e-31 115

Find 110 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAACCACTATTGAAAT+AGG 0.204032 5_2:-27531105 Msa0766100:CDS
GGAAGACAGTGTTTCCAATT+TGG 0.230598 5_2:-27533070 Msa0766100:CDS
GTGCATGCCGCAAAAGTAAA+AGG 0.236416 5_2:+27530439 None:intergenic
CTTGCGTGATCCTCGACTTT+TGG 0.256892 5_2:-27530868 Msa0766100:CDS
TTAACTCATTCAATTCAATT+AGG 0.321872 5_2:+27533658 None:intergenic
ATAGTGGTTTCTTCAGGAAT+AGG 0.347604 5_2:+27531114 None:intergenic
AATATTCAGCCTTATCAATC+TGG 0.348621 5_2:-27531159 Msa0766100:intron
ATTTCAATAGTGGTTTCTTC+AGG 0.350976 5_2:+27531108 None:intergenic
CGTTATCTAAGAAAGAAAAT+TGG 0.352231 5_2:+27533498 None:intergenic
ATCTTACCCTATTTCAATAG+TGG 0.355747 5_2:+27531098 None:intergenic
AGAGGAGGCTGGACATTATC+TGG 0.364653 5_2:-27530903 Msa0766100:CDS
TACCTTGCTATATTATGGCT+TGG 0.367363 5_2:-27530231 Msa0766100:CDS
TCAGGAATAGGGCGAGGTGG+TGG 0.373410 5_2:+27531126 None:intergenic
ACCGCCGATGCTGGATCATC+TGG 0.376709 5_2:-27533171 Msa0766100:CDS
ACCTTGCTATATTATGGCTT+GGG 0.376940 5_2:-27530230 Msa0766100:CDS
GGCACAGGGAGTCTCCAAAT+TGG 0.387742 5_2:+27533056 None:intergenic
TGTTGGTCAACAGGAACAAC+TGG 0.394104 5_2:+27533243 None:intergenic
TAGTGGTTTCTTCAGGAATA+GGG 0.397798 5_2:+27531115 None:intergenic
CTTTCTCATTGCACCAATGC+TGG 0.404082 5_2:+27531972 None:intergenic
TGATGGATATACTAGTTCAT+TGG 0.408221 5_2:-27528726 Msa0766100:three_prime_UTR
TCTCCGACCACCGCCGATGC+TGG 0.411796 5_2:-27533180 Msa0766100:CDS
ATCTGGATCTGGCTCGGCGG+TGG 0.414945 5_2:-27533154 Msa0766100:CDS
GAAGGTGGTGGGCAGGTTGT+TGG 0.414952 5_2:+27533226 None:intergenic
GACATTATCTGGCTCACCCT+TGG 0.418122 5_2:-27530892 Msa0766100:CDS
AACTTTCTTGCAGAGGAGGC+TGG 0.424560 5_2:-27530914 Msa0766100:intron
AGAAAGAAAATTGGATAAAG+AGG 0.426835 5_2:+27533507 None:intergenic
CGGTGGTCGGAGATGGCGAT+GGG 0.427989 5_2:+27533190 None:intergenic
AGAGGCAGAACGTCAATTCC+TGG 0.431011 5_2:-27530838 Msa0766100:CDS
TGGGCAGGTTGTTGGTCAAC+AGG 0.434759 5_2:+27533234 None:intergenic
CTACCAAGTGATCGCTCATT+GGG 0.436993 5_2:+27533289 None:intergenic
AAGAAACCACTATTGAAATA+GGG 0.437347 5_2:-27531104 Msa0766100:intron
ACTGTAGGTCCTGGAGGTCC+TGG 0.440890 5_2:+27529909 None:intergenic
AAACAATAAATATGGTTTAG+TGG 0.449524 5_2:-27533683 Msa0766100:five_prime_UTR
AATGATCGGAAGGAAGGTGG+TGG 0.456132 5_2:+27533214 None:intergenic
ACTACCAAGTGATCGCTCAT+TGG 0.456166 5_2:+27533288 None:intergenic
CAGGAATAGGGCGAGGTGGT+GGG 0.456864 5_2:+27531127 None:intergenic
GATGCTGGATCATCTGGATC+TGG 0.456987 5_2:-27533165 Msa0766100:CDS
GAGGAAAGTGTCGCGTGGAA+TGG 0.469624 5_2:+27533526 None:intergenic
AGGAAAGTGTCGCGTGGAAT+GGG 0.471327 5_2:+27533527 None:intergenic
GAACACTGACTTGTCTTTGT+CGG 0.478778 5_2:+27530185 None:intergenic
AATTTAGAACAAAAGCAACT+TGG 0.479789 5_2:+27529967 None:intergenic
TCCTGCTGTACTGTAGGTCC+TGG 0.480306 5_2:+27529900 None:intergenic
AGATACGGCACTCAACCATC+TGG 0.480714 5_2:+27533100 None:intergenic
CTAGTATATCCATCACAATC+AGG 0.481787 5_2:+27528734 None:intergenic
GGTTGAGTGCCGTATCTGTC+AGG 0.494067 5_2:-27533094 Msa0766100:CDS
TCCTGGAGGTCCTGGTGCTA+TGG 0.494451 5_2:+27529917 None:intergenic
GCGGTGGTCGGAGATGGCGA+TGG 0.495396 5_2:+27533189 None:intergenic
GCATCGGCGGTGGTCGGAGA+TGG 0.496661 5_2:+27533183 None:intergenic
TCGGAAGGAAGGTGGTGGGC+AGG 0.502664 5_2:+27533219 None:intergenic
GAGACTACCGCTACAGGCAC+AGG 0.503593 5_2:+27533041 None:intergenic
AACTTGTGAGATATGTCATC+AGG 0.505014 5_2:-27531942 Msa0766100:intron
TACCTTGAGACTACCGCTAC+AGG 0.507838 5_2:+27533035 None:intergenic
TTTGTCGATACACGTGCGAC+TGG 0.510160 5_2:+27533610 None:intergenic
AGTTGTCTGCAGGTTGATTG+AGG 0.512672 5_2:-27528762 Msa0766100:intron
AATGAGTTAATTACTAGCAG+TGG 0.517277 5_2:-27533645 Msa0766100:five_prime_UTR
CAGCATTGGTGCAATGAGAA+AGG 0.519925 5_2:-27531971 Msa0766100:CDS
ATTTAGAACAAAAGCAACTT+GGG 0.519948 5_2:+27529968 None:intergenic
GCCATAGCACCAGGACCTCC+AGG 0.524360 5_2:-27529918 Msa0766100:CDS
GGGAATGATCGGAAGGAAGG+TGG 0.530407 5_2:+27533211 None:intergenic
TCGAGGATCACGCAAGTCCA+AGG 0.531123 5_2:+27530875 None:intergenic
TCCAGGACCTACAGTACAGC+AGG 0.533517 5_2:-27529901 Msa0766100:CDS
ACAGAAAGTGTGTCCAGCAT+TGG 0.533571 5_2:-27531985 Msa0766100:CDS
ACTTGTTCCTGCTGTACTGT+AGG 0.533667 5_2:+27529894 None:intergenic
TTTCCCAATGAGCGATCACT+TGG 0.540113 5_2:-27533292 Msa0766100:exon
GCAGTATACCCAGATTGATA+AGG 0.540164 5_2:+27531150 None:intergenic
TGCATGCCGCAAAAGTAAAA+GGG 0.544452 5_2:+27530440 None:intergenic
ATGGGGAATGATCGGAAGGA+AGG 0.548616 5_2:+27533208 None:intergenic
GAACAACTGGGTGGTCGAGT+TGG 0.550257 5_2:+27533256 None:intergenic
CTACACTTCGCCATAGCACC+AGG 0.550759 5_2:-27529927 Msa0766100:CDS
ATATTCAGCCTTATCAATCT+GGG 0.551118 5_2:-27531158 Msa0766100:intron
ACTCATCATATTCAGCATCC+AGG 0.551789 5_2:+27530820 None:intergenic
CGCGTGGAATGGGTATGGTA+TGG 0.561321 5_2:+27533537 None:intergenic
TGCTGTACTGTAGGTCCTGG+AGG 0.564156 5_2:+27529903 None:intergenic
AGATGGCGATGGGGAATGAT+CGG 0.565732 5_2:+27533200 None:intergenic
AGGAATAGGGCGAGGTGGTG+GGG 0.566322 5_2:+27531128 None:intergenic
TGTCTTCCTCCTGACAGATA+CGG 0.567028 5_2:+27533085 None:intergenic
TGCCTGTAGCGGTAGTCTCA+AGG 0.574911 5_2:-27533037 Msa0766100:intron
AGTGTCGCGTGGAATGGGTA+TGG 0.580718 5_2:+27533532 None:intergenic
ATGAGTTAATTACTAGCAGT+GGG 0.581238 5_2:-27533644 Msa0766100:five_prime_UTR
GTTTCTTCAGGAATAGGGCG+AGG 0.582205 5_2:+27531120 None:intergenic
GGCGATGGGGAATGATCGGA+AGG 0.583505 5_2:+27533204 None:intergenic
GGCTCGGCGGTGGATCGTGA+TGG 0.587661 5_2:-27533144 Msa0766100:CDS
AGATGATCCAGCATCGGCGG+TGG 0.592577 5_2:+27533173 None:intergenic
CACTCAACCATCTGGATCAG+TGG 0.593877 5_2:+27533108 None:intergenic
CATGCACTCTCTGTAACAGA+TGG 0.596020 5_2:-27530423 Msa0766100:CDS
GATCCAGCATCGGCGGTGGT+CGG 0.599580 5_2:+27533177 None:intergenic
ATGATCGGAAGGAAGGTGGT+GGG 0.601522 5_2:+27533215 None:intergenic
TGGATCATCTGGATCTGGCT+CGG 0.605051 5_2:-27533160 Msa0766100:CDS
TATGCTGCTTCTAATGCTAG+TGG 0.606341 5_2:-27530798 Msa0766100:CDS
CTAAATTCTGGGCAGCGTAG+AGG 0.608192 5_2:-27529951 Msa0766100:CDS
TCCAGATGATCCAGCATCGG+CGG 0.608773 5_2:+27533170 None:intergenic
CACTGACTTGTCTTTGTCGG+CGG 0.613302 5_2:+27530188 None:intergenic
GGATCGTGATGGCGATGAGG+AGG 0.616205 5_2:-27533133 Msa0766100:CDS
GCCCAAGCCATAATATAGCA+AGG 0.617032 5_2:+27530229 None:intergenic
CGAGGATCACGCAAGTCCAA+GGG 0.619797 5_2:+27530876 None:intergenic
AGATCCAGATGATCCAGCAT+CGG 0.626452 5_2:+27533167 None:intergenic
GAGGATGCTCCTGATTGTGA+TGG 0.631597 5_2:-27528743 Msa0766100:three_prime_UTR
AGACTACCGCTACAGGCACA+GGG 0.636998 5_2:+27533042 None:intergenic
GAGACTCCCTGTGCCTGTAG+CGG 0.639323 5_2:-27533048 Msa0766100:CDS
ATCATCTGGATCTGGCTCGG+CGG 0.641368 5_2:-27533157 Msa0766100:CDS
TCTTCAGGAATAGGGCGAGG+TGG 0.642080 5_2:+27531123 None:intergenic
TCTGCAATCGCCAAAAGTCG+AGG 0.642761 5_2:+27530858 None:intergenic
GGAGGAGCCACTGATCCAGA+TGG 0.656675 5_2:-27533115 Msa0766100:CDS
GTTGGTCAACAGGAACAACT+GGG 0.659884 5_2:+27533244 None:intergenic
GGTGGTCGGAGATGGCGATG+GGG 0.673400 5_2:+27533191 None:intergenic
GGTGGATCGTGATGGCGATG+AGG 0.679783 5_2:-27533136 Msa0766100:CDS
TGAGTGCCGTATCTGTCAGG+AGG 0.681591 5_2:-27533091 Msa0766100:CDS
ATAAAGAGGAAAGTGTCGCG+TGG 0.716144 5_2:+27533521 None:intergenic
TTACAATTAGAGCAGCTGAG+CGG 0.741254 5_2:+27530763 None:intergenic
GGTCAACAGGAACAACTGGG+TGG 0.749101 5_2:+27533247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATAAAAACAATAAATA+TGG - chr5_2:27528692-27528711 Msa0766100:three_prime_UTR 10.0%
!!! AATCTTTAATTTGAATTTTT+AGG - chr5_2:27529050-27529069 Msa0766100:intron 10.0%
!!! ATCTTTAATTTGAATTTTTA+GGG - chr5_2:27529051-27529070 Msa0766100:intron 10.0%
!! TATATAAATATTGACAAAAA+AGG - chr5_2:27533520-27533539 Msa0766100:five_prime_UTR 10.0%
!! ATATAAATATTGACAAAAAA+GGG - chr5_2:27533521-27533540 Msa0766100:five_prime_UTR 10.0%
!!! CGTTATTTTTTAATTTTTGT+AGG - chr5_2:27529396-27529415 Msa0766100:intron 15.0%
!! TTCATAAAAAATGTGAATAA+TGG - chr5_2:27529864-27529883 Msa0766100:intron 15.0%
!!! ATGTGAATATTTTTTTAAAG+TGG - chr5_2:27530530-27530549 Msa0766100:intron 15.0%
!!! TTTTGTCTATGAAAAAAATA+TGG - chr5_2:27530981-27531000 Msa0766100:intron 15.0%
!! TTTGTCTATGAAAAAAATAT+GGG - chr5_2:27530982-27531001 Msa0766100:intron 15.0%
!! ATGATATAAGTATCATTAAA+AGG + chr5_2:27532861-27532880 None:intergenic 15.0%
!! TTAGATATAATTTACAACAA+GGG - chr5_2:27533039-27533058 Msa0766100:CDS 15.0%
!! TATAAATATTGACAAAAAAG+GGG - chr5_2:27533522-27533541 Msa0766100:five_prime_UTR 15.0%
!! AAACAATAAATATGGTTTAG+TGG - chr5_2:27528700-27528719 Msa0766100:three_prime_UTR 20.0%
!! TTAACTCATTCAATTCAATT+AGG + chr5_2:27528728-27528747 None:intergenic 20.0%
!! TATTATGAATGAGATAGAAA+AGG + chr5_2:27528989-27529008 None:intergenic 20.0%
!! AATCAATAATCATGTATGAT+TGG - chr5_2:27529525-27529544 Msa0766100:intron 20.0%
!! ATCAATAATCATGTATGATT+GGG - chr5_2:27529526-27529545 Msa0766100:intron 20.0%
!! AAAATTCCACACAAAAATAT+CGG + chr5_2:27529890-27529909 None:intergenic 20.0%
!! ATATGTTATATACATGACTT+GGG + chr5_2:27530716-27530735 None:intergenic 20.0%
!! TATATGTTATATACATGACT+TGG + chr5_2:27530717-27530736 None:intergenic 20.0%
!! AAGTCATGTATATAACATAT+AGG - chr5_2:27530716-27530735 Msa0766100:intron 20.0%
!!! TTTTCAATTTTGTTAGGAAA+TGG - chr5_2:27530913-27530932 Msa0766100:intron 20.0%
!!! TTTCAATTTTGTTAGGAAAT+GGG - chr5_2:27530914-27530933 Msa0766100:intron 20.0%
!! TTGTCTATGAAAAAAATATG+GGG - chr5_2:27530983-27531002 Msa0766100:intron 20.0%
!!! TTATACAGAGTTTTGTAAAA+TGG + chr5_2:27531668-27531687 None:intergenic 20.0%
!! TTACAAAACTCTGTATAATT+TGG - chr5_2:27531670-27531689 Msa0766100:intron 20.0%
!!! TAACCCAATTTTTTAATGTT+TGG - chr5_2:27531908-27531927 Msa0766100:intron 20.0%
!! GTACCAAACATTAAAAAATT+GGG + chr5_2:27531914-27531933 None:intergenic 20.0%
!! TGTACCAAACATTAAAAAAT+TGG + chr5_2:27531915-27531934 None:intergenic 20.0%
!! ACATAAATCAATATAACAGT+CGG + chr5_2:27532063-27532082 None:intergenic 20.0%
!! AAATCAAGATTAACAATAGA+TGG + chr5_2:27532583-27532602 None:intergenic 20.0%
!! ATAAATTGAATGGATAGTAA+GGG + chr5_2:27532660-27532679 None:intergenic 20.0%
!! TAAATCACTAGTTATATAAG+CGG + chr5_2:27532729-27532748 None:intergenic 20.0%
!! AATTATATAATTTACAGCCA+GGG - chr5_2:27533004-27533023 Msa0766100:intron 20.0%
!! GTTAGATATAATTTACAACA+AGG - chr5_2:27533038-27533057 Msa0766100:CDS 20.0%
!! ATAAATATTGACAAAAAAGG+GGG - chr5_2:27533523-27533542 Msa0766100:five_prime_UTR 20.0%
! AGAAAGAAAATTGGATAAAG+AGG + chr5_2:27528879-27528898 None:intergenic 25.0%
! CGTTATCTAAGAAAGAAAAT+TGG + chr5_2:27528888-27528907 None:intergenic 25.0%
!! TCTCTCTTCTAACAAATTTT+CGG - chr5_2:27528959-27528978 Msa0766100:intron 25.0%
! TCAATAATCATGTATGATTG+GGG - chr5_2:27529527-27529546 Msa0766100:intron 25.0%
! TGATCGATCAATTTGAAAAA+TGG - chr5_2:27529766-27529785 Msa0766100:intron 25.0%
! TATGAAGCTAATTCAGATTA+GGG + chr5_2:27529850-27529869 None:intergenic 25.0%
! TTATGAAGCTAATTCAGATT+AGG + chr5_2:27529851-27529870 None:intergenic 25.0%
! GAGTTTATGAAATATTGTGT+TGG - chr5_2:27530145-27530164 Msa0766100:intron 25.0%
! AAGCAAAAAACAATTTCTCA+CGG + chr5_2:27530239-27530258 None:intergenic 25.0%
! TGATTAATGCATTAATGTGA+TGG - chr5_2:27530272-27530291 Msa0766100:intron 25.0%
!! ATTTTTGAACTGTTGGTATT+TGG - chr5_2:27530358-27530377 Msa0766100:intron 25.0%
!! TCCTGATTTTCAATTTTGTT+AGG - chr5_2:27530907-27530926 Msa0766100:intron 25.0%
! TCCTAACAAAATTGAAAATC+AGG + chr5_2:27530911-27530930 None:intergenic 25.0%
! TGTCTATGAAAAAAATATGG+GGG - chr5_2:27530984-27531003 Msa0766100:intron 25.0%
! CACAACTAAATTATACTTCA+AGG - chr5_2:27531032-27531051 Msa0766100:intron 25.0%
!! TTGTAACTTTGTATTTTGTG+TGG - chr5_2:27531080-27531099 Msa0766100:intron 25.0%
! CACAAATGATATTAAGCATT+GGG + chr5_2:27531131-27531150 None:intergenic 25.0%
! ACACAAATGATATTAAGCAT+TGG + chr5_2:27531132-27531151 None:intergenic 25.0%
! AAGAAACCACTATTGAAATA+GGG - chr5_2:27531279-27531298 Msa0766100:intron 25.0%
!!! GTTATATTGATTTATGTGAC+CGG - chr5_2:27532066-27532085 Msa0766100:intron 25.0%
!!! TCTTTTACCTTGCTATATTA+TGG - chr5_2:27532147-27532166 Msa0766100:intron 25.0%
!!! ACTGTTTTTGTATTTTGAAC+AGG - chr5_2:27532371-27532390 Msa0766100:intron 25.0%
!! ATTTAGAACAAAAGCAACTT+GGG + chr5_2:27532418-27532437 None:intergenic 25.0%
!! AATTTAGAACAAAAGCAACT+TGG + chr5_2:27532419-27532438 None:intergenic 25.0%
!!! TTGCTTTTGTTCTAAATTCT+GGG - chr5_2:27532421-27532440 Msa0766100:intron 25.0%
! GATAAATTGAATGGATAGTA+AGG + chr5_2:27532661-27532680 None:intergenic 25.0%
!!! TTCTTATTTTCGTTCAATTG+AGG - chr5_2:27532773-27532792 Msa0766100:intron 25.0%
! CAATTATATAATTTACAGCC+AGG - chr5_2:27533003-27533022 Msa0766100:intron 25.0%
! AAGTCTATCATATCTATTGT+TGG - chr5_2:27533127-27533146 Msa0766100:CDS 25.0%
! AGTCTATCATATCTATTGTT+GGG - chr5_2:27533128-27533147 Msa0766100:CDS 25.0%
! TATGAACAAAGGAAACATAA+AGG + chr5_2:27533198-27533217 None:intergenic 25.0%
!!! TCTGATTTTTAAGTTGTGTT+TGG - chr5_2:27533394-27533413 Msa0766100:intron 25.0%
!!! ATTTTAAAGTTGTGTGTTGA+TGG - chr5_2:27533425-27533444 Msa0766100:five_prime_UTR 25.0%
!!! AGTAACTGAAAAGTATTGTT+TGG - chr5_2:27533459-27533478 Msa0766100:five_prime_UTR 25.0%
! TAAATATTGACAAAAAAGGG+GGG - chr5_2:27533524-27533543 Msa0766100:five_prime_UTR 25.0%
AATGAGTTAATTACTAGCAG+TGG - chr5_2:27528738-27528757 Msa0766100:three_prime_UTR 30.0%
ATGAGTTAATTACTAGCAGT+GGG - chr5_2:27528739-27528758 Msa0766100:three_prime_UTR 30.0%
CAATAATCATGTATGATTGG+GGG - chr5_2:27529528-27529547 Msa0766100:intron 30.0%
AAAAATAAGCCAATCCAAAC+AGG + chr5_2:27529554-27529573 None:intergenic 30.0%
TGTATAAGCTGCTAAAAGTA+AGG + chr5_2:27529580-27529599 None:intergenic 30.0%
GCAGCTTATACAAATAAGTA+AGG - chr5_2:27529588-27529607 Msa0766100:intron 30.0%
TGATCGATCATATCATTCTA+GGG + chr5_2:27529756-27529775 None:intergenic 30.0%
TTGATCGATCATATCATTCT+AGG + chr5_2:27529757-27529776 None:intergenic 30.0%
CGATCAATTTGAAAAATGGT+TGG - chr5_2:27529770-27529789 Msa0766100:intron 30.0%
ATGAAGCTAATTCAGATTAG+GGG + chr5_2:27529849-27529868 None:intergenic 30.0%
! TGCATGATAATTTAAGACAC+CGG - chr5_2:27529960-27529979 Msa0766100:CDS 30.0%
! TGTTTAAGAGTATGTGTTGA+TGG - chr5_2:27530023-27530042 Msa0766100:intron 30.0%
TCCACATCAATGTAGAAAAT+GGG + chr5_2:27530124-27530143 None:intergenic 30.0%
ATCCACATCAATGTAGAAAA+TGG + chr5_2:27530125-27530144 None:intergenic 30.0%
! AAGTGATCTAATTTGCAACT+AGG + chr5_2:27530194-27530213 None:intergenic 30.0%
AGCAAAAAACAATTTCTCAC+GGG + chr5_2:27530238-27530257 None:intergenic 30.0%
ATACCAACAGTTCAAAAATC+AGG + chr5_2:27530357-27530376 None:intergenic 30.0%
CGACAAAAAGACAACTTATT+CGG + chr5_2:27530497-27530516 None:intergenic 30.0%
! CGAATAAGTTGTCTTTTTGT+CGG - chr5_2:27530495-27530514 Msa0766100:intron 30.0%
!! ATGATTGTTCTGAAATCAGT+AGG + chr5_2:27530646-27530665 None:intergenic 30.0%
! ACTGATTTCAGAACAATCAT+TGG - chr5_2:27530646-27530665 Msa0766100:intron 30.0%
AAAGCTCTATTGTTAGTAGA+AGG + chr5_2:27530676-27530695 None:intergenic 30.0%
TACAGTAGTGTAACATATGT+TGG - chr5_2:27530740-27530759 Msa0766100:intron 30.0%
TTGTTAGGAAATGGGATTTA+AGG - chr5_2:27530922-27530941 Msa0766100:intron 30.0%
GTCTATGAAAAAAATATGGG+GGG - chr5_2:27530985-27531004 Msa0766100:intron 30.0%
! AGCATTGGGTTTAATTCAAA+AGG + chr5_2:27531117-27531136 None:intergenic 30.0%
! AATATTCAGCCTTATCAATC+TGG - chr5_2:27531224-27531243 Msa0766100:intron 30.0%
! ATATTCAGCCTTATCAATCT+GGG - chr5_2:27531225-27531244 Msa0766100:intron 30.0%
ATTTCAATAGTGGTTTCTTC+AGG + chr5_2:27531278-27531297 None:intergenic 30.0%
GAAGAAACCACTATTGAAAT+AGG - chr5_2:27531278-27531297 Msa0766100:intron 30.0%
ATCTTACCCTATTTCAATAG+TGG + chr5_2:27531288-27531307 None:intergenic 30.0%
TTTGTAAAATGGAAGGCAAA+AGG + chr5_2:27531657-27531676 None:intergenic 30.0%
!! ACAGAGTTTTGTAAAATGGA+AGG + chr5_2:27531664-27531683 None:intergenic 30.0%
TTAATGTTTGGTACAGTTGA+TGG - chr5_2:27531920-27531939 Msa0766100:intron 30.0%
ATCACTTACGGAGAAAAAAT+TGG + chr5_2:27532009-27532028 None:intergenic 30.0%
ATAGAGACTCAAATCACTTA+CGG + chr5_2:27532021-27532040 None:intergenic 30.0%
!!! GTTAGTTTTGTTTAGTCTGT+TGG - chr5_2:27532243-27532262 Msa0766100:intron 30.0%
!! GTTTTTGTATTTTGAACAGG+AGG - chr5_2:27532374-27532393 Msa0766100:intron 30.0%
!!! GTTGCTTTTGTTCTAAATTC+TGG - chr5_2:27532420-27532439 Msa0766100:intron 30.0%
TACTTATGTACATATACCAG+CGG - chr5_2:27532616-27532635 Msa0766100:intron 30.0%
TCACAGATCGATAAATTGAA+TGG + chr5_2:27532670-27532689 None:intergenic 30.0%
!!! AGGATTATTTTGATAGCACT+TGG - chr5_2:27532793-27532812 Msa0766100:intron 30.0%
TTCTACAAAAGGATTGCAAA+TGG - chr5_2:27532820-27532839 Msa0766100:intron 30.0%
AATAGTACCCATTTCTATTG+AGG - chr5_2:27532962-27532981 Msa0766100:intron 30.0%
ATAGTACCCATTTCTATTGA+GGG - chr5_2:27532963-27532982 Msa0766100:intron 30.0%
AACAAGACACTTATGAACAA+AGG + chr5_2:27533209-27533228 None:intergenic 30.0%
ACTTAAAAATCAGAGAACCA+GGG + chr5_2:27533388-27533407 None:intergenic 30.0%
AACTTAAAAATCAGAGAACC+AGG + chr5_2:27533389-27533408 None:intergenic 30.0%
!!! GATTTTTAAGTTGTGTTTGG+AGG - chr5_2:27533397-27533416 Msa0766100:intron 30.0%
AAATATTGACAAAAAAGGGG+GGG - chr5_2:27533525-27533544 Msa0766100:five_prime_UTR 30.0%
AAGCTAGTAACAAATTGAGA+AGG + chr5_2:27533599-27533618 None:intergenic 30.0%
! TGATGGATATACTAGTTCAT+TGG - chr5_2:27533657-27533676 Msa0766100:five_prime_UTR 30.0%
!!! ATTGGCTTTTTTTACTGAGT+TGG - chr5_2:27533675-27533694 Msa0766100:five_prime_UTR 30.0%
TATCATTCATAAGCTCGTCA+AGG - chr5_2:27529618-27529637 Msa0766100:intron 35.0%
!! ATATCATTCTAGGGCTTGAT+TGG + chr5_2:27529747-27529766 None:intergenic 35.0%
!! TAATGGCCGATATTTTTGTG+TGG - chr5_2:27529881-27529900 Msa0766100:intron 35.0%
TAATTTAACACTGACACCTC+AGG + chr5_2:27529998-27530017 None:intergenic 35.0%
! ACCCATTTTCTACATTGATG+TGG - chr5_2:27530120-27530139 Msa0766100:intron 35.0%
! CTTCCTGATTTTTGAACTGT+TGG - chr5_2:27530351-27530370 Msa0766100:intron 35.0%
AACTTGTGAGATATGTCATC+AGG - chr5_2:27530441-27530460 Msa0766100:CDS 35.0%
!! ATTGTTCTGAAATCAGTAGG+CGG + chr5_2:27530643-27530662 None:intergenic 35.0%
TGCAATAGAGCTCTTATATG+TGG + chr5_2:27530793-27530812 None:intergenic 35.0%
TCACATTGCAAAACCACTTT+AGG - chr5_2:27530836-27530855 Msa0766100:CDS 35.0%
TCGTAGACTTGTGTGATTTA+TGG - chr5_2:27530860-27530879 Msa0766100:CDS 35.0%
AAAAAAATATGGGGGGAACA+AGG - chr5_2:27530992-27531011 Msa0766100:intron 35.0%
CTGAATATTACATGCACAGA+AGG + chr5_2:27531213-27531232 None:intergenic 35.0%
TAGTGGTTTCTTCAGGAATA+GGG + chr5_2:27531271-27531290 None:intergenic 35.0%
ATAGTGGTTTCTTCAGGAAT+AGG + chr5_2:27531272-27531291 None:intergenic 35.0%
TGTGTTGCATTAGTTAGCTA+TGG - chr5_2:27531400-27531419 Msa0766100:intron 35.0%
TGTTATGAACTTTCTTGCAG+AGG - chr5_2:27531462-27531481 Msa0766100:intron 35.0%
GCTACTTGACAAAAGGTTAT+AGG - chr5_2:27531733-27531752 Msa0766100:intron 35.0%
CATTTGTTCAGTGTTTGTGT+TGG - chr5_2:27531847-27531866 Msa0766100:intron 35.0%
CTTACGGAGAAAAAATTGGA+TGG + chr5_2:27532005-27532024 None:intergenic 35.0%
AGATAGTAGGCTAATTAGGT+TGG + chr5_2:27532094-27532113 None:intergenic 35.0%
CAGAAGATAGTAGGCTAATT+AGG + chr5_2:27532098-27532117 None:intergenic 35.0%
! TACCTTGCTATATTATGGCT+TGG - chr5_2:27532152-27532171 Msa0766100:intron 35.0%
! ACCTTGCTATATTATGGCTT+GGG - chr5_2:27532153-27532172 Msa0766100:intron 35.0%
! CACTTGGTTGATTCTACAAA+AGG - chr5_2:27532809-27532828 Msa0766100:intron 35.0%
TCGTAACCCTCAATAGAAAT+GGG + chr5_2:27532972-27532991 None:intergenic 35.0%
ATCGTAACCCTCAATAGAAA+TGG + chr5_2:27532973-27532992 None:intergenic 35.0%
! TTAAGTTGTGTTTGGAGGAA+TGG - chr5_2:27533402-27533421 Msa0766100:intron 35.0%
CTAGTATATCCATCACAATC+AGG + chr5_2:27533652-27533671 None:intergenic 35.0%
GGAAGACAGTGTTTCCAATT+TGG - chr5_2:27529313-27529332 Msa0766100:intron 40.0%
!! ATTCTAGGGCTTGATTGGAT+TGG + chr5_2:27529742-27529761 None:intergenic 40.0%
GGAGTTGACACAAATGAGAT+CGG - chr5_2:27529791-27529810 Msa0766100:intron 40.0%
! AGTTGTCTTTTTGTCGGTGA+TGG - chr5_2:27530501-27530520 Msa0766100:intron 40.0%
! GTTGTCTTTTTGTCGGTGAT+GGG - chr5_2:27530502-27530521 Msa0766100:intron 40.0%
TATGTGGACACAACATCACA+TGG + chr5_2:27530777-27530796 None:intergenic 40.0%
ATGCCAAAGACAAGGACAAT+TGG + chr5_2:27530817-27530836 None:intergenic 40.0%
ACATGCACAGAAGGAAAAAG+AGG + chr5_2:27531204-27531223 None:intergenic 40.0%
GCAGTATACCCAGATTGATA+AGG + chr5_2:27531236-27531255 None:intergenic 40.0%
TATGAACTTTCTTGCAGAGG+AGG - chr5_2:27531465-27531484 Msa0766100:intron 40.0%
ACTCATCATATTCAGCATCC+AGG + chr5_2:27531566-27531585 None:intergenic 40.0%
! TATGCTGCTTCTAATGCTAG+TGG - chr5_2:27531585-27531604 Msa0766100:intron 40.0%
TTACAATTAGAGCAGCTGAG+CGG + chr5_2:27531623-27531642 None:intergenic 40.0%
GTAGCATTTCCCACAACATA+AGG + chr5_2:27531718-27531737 None:intergenic 40.0%
! GGGAAATGCTACTTGACAAA+AGG - chr5_2:27531726-27531745 Msa0766100:intron 40.0%
! ACAAATGCAGTGAAGCATCA+GGG + chr5_2:27531834-27531853 None:intergenic 40.0%
! AACAAATGCAGTGAAGCATC+AGG + chr5_2:27531835-27531854 None:intergenic 40.0%
!! TGATGGCCCTTTTACTTTTG+CGG - chr5_2:27531937-27531956 Msa0766100:intron 40.0%
TGCATGCCGCAAAAGTAAAA+GGG + chr5_2:27531946-27531965 None:intergenic 40.0%
GAAAAGCTGCAGAAGATAGT+AGG + chr5_2:27532107-27532126 None:intergenic 40.0%
!! GAACACTGACTTGTCTTTGT+CGG + chr5_2:27532201-27532220 None:intergenic 40.0%
AAGCTGCATACAATGAGTTC+TGG - chr5_2:27532305-27532324 Msa0766100:intron 40.0%
AGCTGCATACAATGAGTTCT+GGG - chr5_2:27532306-27532325 Msa0766100:intron 40.0%
!! CAGTTTTATGTGAGACACCA+TGG - chr5_2:27532523-27532542 Msa0766100:intron 40.0%
TTATGTACATATACCAGCGG+CGG - chr5_2:27532619-27532638 Msa0766100:intron 40.0%
CAAGGGTCTGTTTGATGTTT+AGG - chr5_2:27533056-27533075 Msa0766100:CDS 40.0%
TGAGCAATTACAGTCGTATG+AGG + chr5_2:27533265-27533284 None:intergenic 40.0%
GAGGTTGCAGATGAAAGAAA+GGG + chr5_2:27533310-27533329 None:intergenic 40.0%
AGAGGTTGCAGATGAAAGAA+AGG + chr5_2:27533311-27533330 None:intergenic 40.0%
ATCATGTTTGAAGACGAGAG+CGG + chr5_2:27533343-27533362 None:intergenic 40.0%
TTCATCTTTCTTCTTTGCCC+TGG - chr5_2:27533368-27533387 Msa0766100:intron 40.0%
! CCATGTTTGGAAGCATACTT+GGG - chr5_2:27533553-27533572 Msa0766100:five_prime_UTR 40.0%
!! ATAAAGAGGAAAGTGTCGCG+TGG + chr5_2:27528865-27528884 None:intergenic 45.0%
TTTCCCAATGAGCGATCACT+TGG - chr5_2:27529091-27529110 Msa0766100:intron 45.0%
CTACCAAGTGATCGCTCATT+GGG + chr5_2:27529097-27529116 None:intergenic 45.0%
ACTACCAAGTGATCGCTCAT+TGG + chr5_2:27529098-27529117 None:intergenic 45.0%
GTTGGTCAACAGGAACAACT+GGG + chr5_2:27529142-27529161 None:intergenic 45.0%
TGTTGGTCAACAGGAACAAC+TGG + chr5_2:27529143-27529162 None:intergenic 45.0%
AGATCCAGATGATCCAGCAT+CGG + chr5_2:27529219-27529238 None:intergenic 45.0%
TGTCTTCCTCCTGACAGATA+CGG + chr5_2:27529301-27529320 None:intergenic 45.0%
GTTGACACAAATGAGATCGG+TGG - chr5_2:27529794-27529813 Msa0766100:intron 45.0%
GTCTATGTGTCAGTGTCATC+TGG + chr5_2:27529939-27529958 None:intergenic 45.0%
TAAGACACCGGATACACCTT+CGG - chr5_2:27529972-27529991 Msa0766100:CDS 45.0%
GTCAAATGCAAGACGAGCAA+TGG + chr5_2:27530301-27530320 None:intergenic 45.0%
! ACAGAAAGTGTGTCCAGCAT+TGG - chr5_2:27530398-27530417 Msa0766100:CDS 45.0%
CTTTCTCATTGCACCAATGC+TGG + chr5_2:27530414-27530433 None:intergenic 45.0%
!! CAGCATTGGTGCAATGAGAA+AGG - chr5_2:27530412-27530431 Msa0766100:CDS 45.0%
! TGTTTAAGACCCTCCTTCGT+TGG - chr5_2:27530577-27530596 Msa0766100:intron 45.0%
TATGCATACGATGCCAACGA+AGG + chr5_2:27530593-27530612 None:intergenic 45.0%
!! CGTGCAGGCATCTAAGATTT+TGG - chr5_2:27530613-27530632 Msa0766100:intron 45.0%
!! TTCTGAAATCAGTAGGCGGT+GGG + chr5_2:27530639-27530658 None:intergenic 45.0%
CAGCCAATTGTCCTTGTCTT+TGG - chr5_2:27530811-27530830 Msa0766100:CDS 45.0%
GCAATGTGATGCCAAAGACA+AGG + chr5_2:27530825-27530844 None:intergenic 45.0%
ACAAGTCTACGAGCCTAAAG+TGG + chr5_2:27530852-27530871 None:intergenic 45.0%
GGGGGAACAAGGAAATTCTT+AGG - chr5_2:27531003-27531022 Msa0766100:intron 45.0%
GCTCAGCTGCTCTAATTGTA+AGG - chr5_2:27531622-27531641 Msa0766100:intron 45.0%
CACCAGCATCCTTATGTTGT+GGG - chr5_2:27531706-27531725 Msa0766100:intron 45.0%
TTCCCACAACATAAGGATGC+TGG + chr5_2:27531711-27531730 None:intergenic 45.0%
GTGCATGCCGCAAAAGTAAA+AGG + chr5_2:27531947-27531966 None:intergenic 45.0%
CATGCACTCTCTGTAACAGA+TGG - chr5_2:27531960-27531979 Msa0766100:CDS 45.0%
!! TAGGCTAATTAGGTTGGCTC+CGG + chr5_2:27532088-27532107 None:intergenic 45.0%
GCCCAAGCCATAATATAGCA+AGG + chr5_2:27532157-27532176 None:intergenic 45.0%
ACTTGTTCCTGCTGTACTGT+AGG + chr5_2:27532492-27532511 None:intergenic 45.0%
TTCGTATGGCATACATGCCA+TGG + chr5_2:27532543-27532562 None:intergenic 45.0%
GCATGTATGCCATACGAAGA+AGG - chr5_2:27532545-27532564 Msa0766100:intron 45.0%
CTCAACAAGCCTTCTTCGTA+TGG + chr5_2:27532557-27532576 None:intergenic 45.0%
TCTAACCATCAAACAGACCC+TGG + chr5_2:27533024-27533043 None:intergenic 45.0%
AAGAGATGTGAGAGGAAGAG+AGG + chr5_2:27533239-27533258 None:intergenic 45.0%
TGAGGTTCAAGAGATGTGAG+AGG + chr5_2:27533247-27533266 None:intergenic 45.0%
ATTGACAAAAAAGGGGGGGA+AGG - chr5_2:27533529-27533548 Msa0766100:five_prime_UTR 45.0%
TTGACAAAAAAGGGGGGGAA+GGG - chr5_2:27533530-27533549 Msa0766100:five_prime_UTR 45.0%
! GCCATGTTTGGAAGCATACT+TGG - chr5_2:27533552-27533571 Msa0766100:five_prime_UTR 45.0%
CCCAAGTATGCTTCCAAACA+TGG + chr5_2:27533556-27533575 None:intergenic 45.0%
AAGCATACTTGGGAGCTATG+AGG - chr5_2:27533563-27533582 Msa0766100:five_prime_UTR 45.0%
!! ACTAGCTTTGAGTTGTCTGC+AGG - chr5_2:27533611-27533630 Msa0766100:five_prime_UTR 45.0%
!! AGTTGTCTGCAGGTTGATTG+AGG - chr5_2:27533621-27533640 Msa0766100:five_prime_UTR 45.0%
!!! ATTTGTTTTTTTTTTTTATA+TGG - chr5_2:27529419-27529438 Msa0766100:intron 5.0%
!! CAAAATAATATAATATAATT+AGG + chr5_2:27531163-27531182 None:intergenic 5.0%
TTTGTCGATACACGTGCGAC+TGG + chr5_2:27528776-27528795 None:intergenic 50.0%
!! AGGAAAGTGTCGCGTGGAAT+GGG + chr5_2:27528859-27528878 None:intergenic 50.0%
ATGATCGGAAGGAAGGTGGT+GGG + chr5_2:27529171-27529190 None:intergenic 50.0%
AATGATCGGAAGGAAGGTGG+TGG + chr5_2:27529172-27529191 None:intergenic 50.0%
ATGGGGAATGATCGGAAGGA+AGG + chr5_2:27529178-27529197 None:intergenic 50.0%
AGATGGCGATGGGGAATGAT+CGG + chr5_2:27529186-27529205 None:intergenic 50.0%
GATGCTGGATCATCTGGATC+TGG - chr5_2:27529218-27529237 Msa0766100:intron 50.0%
TGGATCATCTGGATCTGGCT+CGG - chr5_2:27529223-27529242 Msa0766100:intron 50.0%
CACTCAACCATCTGGATCAG+TGG + chr5_2:27529278-27529297 None:intergenic 50.0%
AGATACGGCACTCAACCATC+TGG + chr5_2:27529286-27529305 None:intergenic 50.0%
TACCTTGAGACTACCGCTAC+AGG + chr5_2:27529351-27529370 None:intergenic 50.0%
TGTATGATTGGGGGCCTGTT+TGG - chr5_2:27529537-27529556 Msa0766100:intron 50.0%
GGTTCGCTCTGACCTTGTAT+AGG - chr5_2:27529815-27529834 Msa0766100:intron 50.0%
GGGGAGTCACAACCTATACA+AGG + chr5_2:27529830-27529849 None:intergenic 50.0%
CATACGATGCCAACGAAGGA+GGG + chr5_2:27530589-27530608 None:intergenic 50.0%
!! GTTCTGAAATCAGTAGGCGG+TGG + chr5_2:27530640-27530659 None:intergenic 50.0%
GTTTCTTCAGGAATAGGGCG+AGG + chr5_2:27531266-27531285 None:intergenic 50.0%
AACTTTCTTGCAGAGGAGGC+TGG - chr5_2:27531469-27531488 Msa0766100:intron 50.0%
AGAGGAGGCTGGACATTATC+TGG - chr5_2:27531480-27531499 Msa0766100:intron 50.0%
! GACATTATCTGGCTCACCCT+TGG - chr5_2:27531491-27531510 Msa0766100:intron 50.0%
! CTTGCGTGATCCTCGACTTT+TGG - chr5_2:27531515-27531534 Msa0766100:intron 50.0%
TCTGCAATCGCCAAAAGTCG+AGG + chr5_2:27531528-27531547 None:intergenic 50.0%
! TCGACTTTTGGCGATTGCAG+AGG - chr5_2:27531527-27531546 Msa0766100:intron 50.0%
AGAGGCAGAACGTCAATTCC+TGG - chr5_2:27531545-27531564 Msa0766100:intron 50.0%
GCACCAGCATCCTTATGTTG+TGG - chr5_2:27531705-27531724 Msa0766100:intron 50.0%
! CTTTTCTTGCTTCGAGCTGC+TGG - chr5_2:27532121-27532140 Msa0766100:intron 50.0%
!! CACTGACTTGTCTTTGTCGG+CGG + chr5_2:27532198-27532217 None:intergenic 50.0%
CTAAATTCTGGGCAGCGTAG+AGG - chr5_2:27532432-27532451 Msa0766100:intron 50.0%
TACAGCCAGGGTCTGTTTGA+TGG - chr5_2:27533016-27533035 Msa0766100:intron 50.0%
AGAAAGGGAGACATCAGCGA+CGG + chr5_2:27533295-27533314 None:intergenic 50.0%
GAGGATGCTCCTGATTGTGA+TGG - chr5_2:27533640-27533659 Msa0766100:five_prime_UTR 50.0%
CGCGTGGAATGGGTATGGTA+TGG + chr5_2:27528849-27528868 None:intergenic 55.0%
AGTGTCGCGTGGAATGGGTA+TGG + chr5_2:27528854-27528873 None:intergenic 55.0%
!! GAGGAAAGTGTCGCGTGGAA+TGG + chr5_2:27528860-27528879 None:intergenic 55.0%
GAACAACTGGGTGGTCGAGT+TGG + chr5_2:27529130-27529149 None:intergenic 55.0%
GGTCAACAGGAACAACTGGG+TGG + chr5_2:27529139-27529158 None:intergenic 55.0%
TGGGCAGGTTGTTGGTCAAC+AGG + chr5_2:27529152-27529171 None:intergenic 55.0%
GGGAATGATCGGAAGGAAGG+TGG + chr5_2:27529175-27529194 None:intergenic 55.0%
! TCCAGATGATCCAGCATCGG+CGG + chr5_2:27529216-27529235 None:intergenic 55.0%
!! ATCATCTGGATCTGGCTCGG+CGG - chr5_2:27529226-27529245 Msa0766100:intron 55.0%
! GGTTGAGTGCCGTATCTGTC+AGG - chr5_2:27529289-27529308 Msa0766100:intron 55.0%
! TGAGTGCCGTATCTGTCAGG+AGG - chr5_2:27529292-27529311 Msa0766100:intron 55.0%
GGCACAGGGAGTCTCCAAAT+TGG + chr5_2:27529330-27529349 None:intergenic 55.0%
AGACTACCGCTACAGGCACA+GGG + chr5_2:27529344-27529363 None:intergenic 55.0%
TGCCTGTAGCGGTAGTCTCA+AGG - chr5_2:27529346-27529365 Msa0766100:intron 55.0%
GATTGGGGGCCTGTTTGGAT+TGG - chr5_2:27529542-27529561 Msa0766100:intron 55.0%
GCATACGATGCCAACGAAGG+AGG + chr5_2:27530590-27530609 None:intergenic 55.0%
GGCATCGTATGCATACGTGC+AGG - chr5_2:27530598-27530617 Msa0766100:intron 55.0%
TCTTCAGGAATAGGGCGAGG+TGG + chr5_2:27531263-27531282 None:intergenic 55.0%
CGAGGATCACGCAAGTCCAA+GGG + chr5_2:27531510-27531529 None:intergenic 55.0%
TCGAGGATCACGCAAGTCCA+AGG + chr5_2:27531511-27531530 None:intergenic 55.0%
CTACACTTCGCCATAGCACC+AGG - chr5_2:27532456-27532475 Msa0766100:intron 55.0%
TGCTGTACTGTAGGTCCTGG+AGG + chr5_2:27532483-27532502 None:intergenic 55.0%
TCCAGGACCTACAGTACAGC+AGG - chr5_2:27532482-27532501 Msa0766100:intron 55.0%
TCCTGCTGTACTGTAGGTCC+TGG + chr5_2:27532486-27532505 None:intergenic 55.0%
ACATGCAGATTTACCGCCGC+TGG + chr5_2:27532635-27532654 None:intergenic 55.0%
!! GAAGGTGGTGGGCAGGTTGT+TGG + chr5_2:27529160-27529179 None:intergenic 60.0%
GGCGATGGGGAATGATCGGA+AGG + chr5_2:27529182-27529201 None:intergenic 60.0%
!! AGATGATCCAGCATCGGCGG+TGG + chr5_2:27529213-27529232 None:intergenic 60.0%
ACCGCCGATGCTGGATCATC+TGG - chr5_2:27529212-27529231 Msa0766100:intron 60.0%
! GGTGGATCGTGATGGCGATG+AGG - chr5_2:27529247-27529266 Msa0766100:intron 60.0%
! GGATCGTGATGGCGATGAGG+AGG - chr5_2:27529250-27529269 Msa0766100:intron 60.0%
GGAGGAGCCACTGATCCAGA+TGG - chr5_2:27529268-27529287 Msa0766100:intron 60.0%
GAGACTCCCTGTGCCTGTAG+CGG - chr5_2:27529335-27529354 Msa0766100:intron 60.0%
GAGACTACCGCTACAGGCAC+AGG + chr5_2:27529345-27529364 None:intergenic 60.0%
! CCTCAGGCCGAAGGTGTATC+CGG + chr5_2:27529982-27530001 None:intergenic 60.0%
ACACTGACACCTCAGGCCGA+AGG + chr5_2:27529991-27530010 None:intergenic 60.0%
AGGAATAGGGCGAGGTGGTG+GGG + chr5_2:27531258-27531277 None:intergenic 60.0%
CAGGAATAGGGCGAGGTGGT+GGG + chr5_2:27531259-27531278 None:intergenic 60.0%
TCAGGAATAGGGCGAGGTGG+TGG + chr5_2:27531260-27531279 None:intergenic 60.0%
! TCCTGGAGGTCCTGGTGCTA+TGG + chr5_2:27532469-27532488 None:intergenic 60.0%
ACTGTAGGTCCTGGAGGTCC+TGG + chr5_2:27532477-27532496 None:intergenic 60.0%
CGAGAGCGGTGAAACGTGAG+AGG + chr5_2:27533329-27533348 None:intergenic 60.0%
!! TCGGAAGGAAGGTGGTGGGC+AGG + chr5_2:27529167-27529186 None:intergenic 65.0%
GGTGGTCGGAGATGGCGATG+GGG + chr5_2:27529195-27529214 None:intergenic 65.0%
CGGTGGTCGGAGATGGCGAT+GGG + chr5_2:27529196-27529215 None:intergenic 65.0%
!! GATCCAGCATCGGCGGTGGT+CGG + chr5_2:27529209-27529228 None:intergenic 65.0%
!! ATCTGGATCTGGCTCGGCGG+TGG - chr5_2:27529229-27529248 Msa0766100:intron 65.0%
CCGGATACACCTTCGGCCTG+AGG - chr5_2:27529979-27529998 Msa0766100:CDS 65.0%
GCCATAGCACCAGGACCTCC+AGG - chr5_2:27532465-27532484 Msa0766100:intron 65.0%
AGGGGGGGAAGGGCCATGTT+TGG - chr5_2:27533540-27533559 Msa0766100:five_prime_UTR 65.0%
GCGGTGGTCGGAGATGGCGA+TGG + chr5_2:27529197-27529216 None:intergenic 70.0%
! GCATCGGCGGTGGTCGGAGA+TGG + chr5_2:27529203-27529222 None:intergenic 70.0%
TCTCCGACCACCGCCGATGC+TGG - chr5_2:27529203-27529222 Msa0766100:intron 70.0%
GGCTCGGCGGTGGATCGTGA+TGG - chr5_2:27529239-27529258 Msa0766100:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 27528691 27533714 27528691 ID=Msa0766100;Name=Msa0766100
chr5_2 mRNA 27528691 27533714 27528691 ID=Msa0766100-mRNA-1;Parent=Msa0766100;Name=Msa0766100-mRNA-1;_AED=0.16;_eAED=0.16;_QI=316|0.87|0.77|0.88|0.87|0.77|9|81|287
chr5_2 exon 27528691 27528772 27528691 ID=Msa0766100-mRNA-1:exon:10804;Parent=Msa0766100-mRNA-1
chr5_2 exon 27529891 27530012 27529891 ID=Msa0766100-mRNA-1:exon:10803;Parent=Msa0766100-mRNA-1
chr5_2 exon 27530195 27530284 27530195 ID=Msa0766100-mRNA-1:exon:10802;Parent=Msa0766100-mRNA-1
chr5_2 exon 27530386 27530469 27530386 ID=Msa0766100-mRNA-1:exon:10801;Parent=Msa0766100-mRNA-1
chr5_2 exon 27530767 27530923 27530767 ID=Msa0766100-mRNA-1:exon:10800;Parent=Msa0766100-mRNA-1
chr5_2 exon 27531105 27531172 27531105 ID=Msa0766100-mRNA-1:exon:10799;Parent=Msa0766100-mRNA-1
chr5_2 exon 27531943 27532014 27531943 ID=Msa0766100-mRNA-1:exon:10798;Parent=Msa0766100-mRNA-1
chr5_2 exon 27533038 27533333 27533038 ID=Msa0766100-mRNA-1:exon:10797;Parent=Msa0766100-mRNA-1
chr5_2 exon 27533425 27533714 27533425 ID=Msa0766100-mRNA-1:exon:10796;Parent=Msa0766100-mRNA-1
chr5_2 five_prime_UTR 27533425 27533714 27533425 ID=Msa0766100-mRNA-1:five_prime_utr;Parent=Msa0766100-mRNA-1
chr5_2 five_prime_UTR 27533308 27533333 27533308 ID=Msa0766100-mRNA-1:five_prime_utr;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27533038 27533307 27533038 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27531943 27532014 27531943 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27531105 27531172 27531105 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27530767 27530923 27530767 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27530386 27530469 27530386 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27530195 27530284 27530195 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27529891 27530012 27529891 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 CDS 27528772 27528772 27528772 ID=Msa0766100-mRNA-1:cds;Parent=Msa0766100-mRNA-1
chr5_2 three_prime_UTR 27528691 27528771 27528691 ID=Msa0766100-mRNA-1:three_prime_utr;Parent=Msa0766100-mRNA-1
Gene Sequence

>Msa0766100

ATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGTTGACCAACAACCTGCCCACCACCTTCCTTCCGATCATTCCCCATCGCCATCTCCGACCACCGCCGATGCTGGATCATCTGGATCTGGCTCGGCGGTGGATCGTGATGGCGATGAGGAGGAGCCACTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAAGACAGTGTTTCCAATTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGCCCTATTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTTTTGGCGATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTTTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGCCGACAAAGACAAGAGGCAGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACACTTCGCCATAGCACCAGGACCTCCAGGACCTACAGTACAGCAGGAACAAGTGTAG

Protein sequence

>Msa0766100

MSDHLVVIVDQLDHPVVPVDQQPAHHLPSDHSPSPSPTTADAGSSGSGSAVDRDGDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPIPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPGPPGPTVQQEQV*