Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402610 | XP_003602521.2 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 4.72e-171 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402610 | sp|Q99JH1|RP25L_MOUSE | 34.559 | 136 | 80 | 3 | 1 | 127 | 1 | 136 | 5.12e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402610 | G7JAE0 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 2.25e-171 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003610 | Msa1402610 | 0.801855 | 7.395444e-49 | -8.615850e-47 |
| Msa0058320 | Msa1402610 | 0.810098 | 1.364798e-50 | -8.615850e-47 |
| Msa0425410 | Msa1402610 | 0.898221 | 6.562371e-77 | -8.615850e-47 |
| Msa0436720 | Msa1402610 | 0.853271 | 2.668231e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402610 | MtrunA17_Chr3g0129501 | 99.539 | 217 | 1 | 0 | 29 | 245 | 1 | 217 | 2.02e-153 | 425 |
| Msa1402610 | MtrunA17_Chr3g0129471 | 94.330 | 194 | 11 | 0 | 29 | 222 | 1 | 194 | 4.48e-93 | 272 |
| Msa1402610 | MtrunA17_Chr3g0129481 | 94.558 | 147 | 5 | 2 | 29 | 173 | 1 | 146 | 2.53e-81 | 242 |
| Msa1402610 | MtrunA17_Chr7g0237631 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 4.53e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402610 | AT1G76010.2 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 2.36e-73 | 227 |
| Msa1402610 | AT1G76010.1 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 2.36e-73 | 227 |
| Msa1402610 | AT1G20220.1 | 72.973 | 148 | 39 | 1 | 1 | 147 | 1 | 148 | 5.11e-70 | 218 |
| Msa1402610 | AT3G07030.2 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 5.45e-58 | 189 |
| Msa1402610 | AT3G07030.3 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 5.45e-58 | 189 |
| Msa1402610 | AT3G07030.4 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 6.59e-58 | 189 |
| Msa1402610 | AT3G07030.1 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.47e-57 | 188 |
| Msa1402610 | AT3G07030.5 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.81e-57 | 189 |
Find 121 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCTCATTCTCGTTAAT+TGG | 0.167660 | tig0022882:-4411 | None:intergenic |
| CGTGGAAGGGGAAGGGGCCG+TGG | 0.286344 | tig0022882:+8275 | Msa1402610:CDS |
| GTTTGTGTTGTGGGTGGGTT+TGG | 0.292633 | tig0022882:-4219 | None:intergenic |
| AGGGGAAGGGGCCGTGGGCG+TGG | 0.303449 | tig0022882:+8281 | Msa1402610:CDS |
| CTGCATCAGAACACTCAAAT+TGG | 0.306654 | tig0022882:+6174 | Msa1402610:CDS |
| GTTAATTGGACTATCTGCTT+TGG | 0.315332 | tig0022882:-4397 | None:intergenic |
| TTTGGGCGAATACGGGGATA+TGG | 0.319104 | tig0022882:-4201 | None:intergenic |
| TGGGTGGGTTTGGGCGAATA+CGG | 0.323601 | tig0022882:-4209 | None:intergenic |
| CGTGGAAGGGGCAGGGGTAG+AGG | 0.333283 | tig0022882:+7567 | Msa1402610:CDS |
| TTAATTGGACTATCTGCTTT+GGG | 0.341721 | tig0022882:-4396 | None:intergenic |
| GCAGAGGGCGCGTCCGTGCA+TGG | 0.343284 | tig0022882:+7801 | Msa1402610:CDS |
| AGGGGAAGGGGTCGTGGAAG+GGG | 0.344420 | tig0022882:+7555 | Msa1402610:CDS |
| AGGGGTCGTGGAAGGGGCAG+GGG | 0.348078 | tig0022882:+7561 | Msa1402610:CDS |
| AGGGGCAGGGGTAGAGGTAG+AGG | 0.349329 | tig0022882:+7573 | Msa1402610:CDS |
| CTTCCCCTTCCTCGCATCCT+TGG | 0.356404 | tig0022882:-7540 | None:intergenic |
| CGAGGTCGTGGAAGGGGAAG+GGG | 0.356867 | tig0022882:+8269 | Msa1402610:CDS |
| AATGGTGAAGCAGATGAAAA+AGG | 0.367578 | tig0022882:-4123 | None:intergenic |
| GGTGCAGCTGTCTGATCACC+TGG | 0.367998 | tig0022882:+8320 | Msa1402610:exon |
| CAGAGGGCGCGTCCGTGCAT+GGG | 0.370655 | tig0022882:+7802 | Msa1402610:CDS |
| TAAGTTAGGCAGGTTGAGTT+AGG | 0.375369 | tig0022882:+8513 | Msa1402610:three_prime_UTR |
| GGGTGGGTTTGGGCGAATAC+GGG | 0.391218 | tig0022882:-4208 | None:intergenic |
| GAAGGGGTCGTGGAAGGGGC+AGG | 0.393845 | tig0022882:+7559 | Msa1402610:CDS |
| TTTGTGTTGTGGGTGGGTTT+GGG | 0.397965 | tig0022882:-4218 | None:intergenic |
| GCTATGGTGCCCAGCCAGTT+GGG | 0.398432 | tig0022882:+7852 | Msa1402610:CDS |
| CCATAGTCATACTGCCCAAC+TGG | 0.407567 | tig0022882:-7866 | None:intergenic |
| GGCTATGGTGCCCAGCCAGT+TGG | 0.409114 | tig0022882:+7851 | Msa1402610:CDS |
| TCTTTATAGGAATGTACAAT+GGG | 0.414498 | tig0022882:+7732 | Msa1402610:intron |
| CGAGGAAGGGGAAGGGGTCG+TGG | 0.418781 | tig0022882:+7549 | Msa1402610:CDS |
| CGTGGACGGGGACGGGGCTA+TGG | 0.423409 | tig0022882:+7836 | Msa1402610:CDS |
| AATGATTACCGAGCTAATAA+AGG | 0.426094 | tig0022882:+6052 | Msa1402610:CDS |
| TATGGTGATGGTTGGGATGG+TGG | 0.427513 | tig0022882:+7764 | Msa1402610:CDS |
| ATTATACCGCTTAACACATC+TGG | 0.428830 | tig0022882:-4062 | None:intergenic |
| TGGGATGGTGGACGTGGCTA+TGG | 0.430740 | tig0022882:+7776 | Msa1402610:CDS |
| CTTTGGGTTTCTCCACCCTC+TGG | 0.434627 | tig0022882:-4380 | None:intergenic |
| CGTGGGCGTGGTCGTGATGC+AGG | 0.434775 | tig0022882:+8293 | Msa1402610:CDS |
| CCAGTTGGGCAGTATGACTA+TGG | 0.448789 | tig0022882:+7866 | Msa1402610:CDS |
| GATGTGTTAAGCGGTATAAT+AGG | 0.449227 | tig0022882:+4065 | Msa1402610:five_prime_UTR |
| AGTCATACTGCCCAACTGGC+TGG | 0.453355 | tig0022882:-7862 | None:intergenic |
| ATAGATACCGTTTGTGTTGT+GGG | 0.454740 | tig0022882:-4228 | None:intergenic |
| AGGATGCGAGGAAGGGGAAG+GGG | 0.457113 | tig0022882:+7543 | Msa1402610:CDS |
| ACCTTCCCAATGGGCGTATG+TGG | 0.458011 | tig0022882:-4039 | None:intergenic |
| GGACGTGGCTATGGTGGCAG+AGG | 0.470972 | tig0022882:+7785 | Msa1402610:CDS |
| AAGGGGAAGGGGTCGTGGAA+GGG | 0.475093 | tig0022882:+7554 | Msa1402610:CDS |
| GGTGGGTTTGGGCGAATACG+GGG | 0.475203 | tig0022882:-4207 | None:intergenic |
| CCGAGGTCGTGGAAGGGGAA+GGG | 0.475726 | tig0022882:+8268 | Msa1402610:CDS |
| TTGTTTCAGAGAAGGATTGT+TGG | 0.483573 | tig0022882:+6150 | Msa1402610:intron |
| GAAGGGGAAGGGGTCGTGGA+AGG | 0.485703 | tig0022882:+7553 | Msa1402610:CDS |
| CACATCTGGACCTTCCCAAT+GGG | 0.486858 | tig0022882:-4048 | None:intergenic |
| TCGTCTTCATATTCATTCAA+AGG | 0.488564 | tig0022882:-7413 | None:intergenic |
| CAAGGATGCGAGGAAGGGGA+AGG | 0.491586 | tig0022882:+7541 | Msa1402610:CDS |
| GCCGAGGTCGTGGAAGGGGA+AGG | 0.493587 | tig0022882:+8267 | Msa1402610:CDS |
| CTGTCTGATCACCTGGGTGT+TGG | 0.500099 | tig0022882:+8327 | Msa1402610:exon |
| TATGGAATATGGTGATGGTT+GGG | 0.502393 | tig0022882:+7757 | Msa1402610:CDS |
| TTTACTTGATCAGCAGGAAG+AGG | 0.502624 | tig0022882:-7389 | None:intergenic |
| AAGGGGTCGTGGAAGGGGCA+GGG | 0.504582 | tig0022882:+7560 | Msa1402610:CDS |
| GCAGGCCGAGGTCGTGGAAG+GGG | 0.508952 | tig0022882:+8263 | Msa1402610:intron |
| GCTCACCAAGGATGCGAGGA+AGG | 0.509460 | tig0022882:+7535 | Msa1402610:CDS |
| TGATGTGCAGGCCGAGGTCG+TGG | 0.516693 | tig0022882:+8257 | Msa1402610:intron |
| GTTGGGCCACATACGCCCAT+TGG | 0.517441 | tig0022882:+4033 | None:intergenic |
| TTCTTTATAGGAATGTACAA+TGG | 0.517576 | tig0022882:+7731 | Msa1402610:intron |
| GAAATTGTTGTCAAAGCAAT+GGG | 0.517640 | tig0022882:+6008 | Msa1402610:CDS |
| CCCTTCCCCTTCCACGACCT+CGG | 0.520014 | tig0022882:-8268 | None:intergenic |
| GATGGTTGGGATGGTGGACG+TGG | 0.520396 | tig0022882:+7770 | Msa1402610:CDS |
| GTGCAGGCCGAGGTCGTGGA+AGG | 0.520404 | tig0022882:+8261 | Msa1402610:intron |
| GTTTCTCATCCTTCCTTGAG+TGG | 0.523264 | tig0022882:-4439 | None:intergenic |
| TACGTTGTCAAAGAAAGAGC+TGG | 0.523803 | tig0022882:+6375 | Msa1402610:CDS |
| AAGGATGCGAGGAAGGGGAA+GGG | 0.527077 | tig0022882:+7542 | Msa1402610:CDS |
| GTGGAAGGGGAAGGGGCCGT+GGG | 0.527889 | tig0022882:+8276 | Msa1402610:CDS |
| AAACCCACCCACAACACAAA+CGG | 0.530979 | tig0022882:+4221 | Msa1402610:five_prime_UTR |
| GTCATACTGCCCAACTGGCT+GGG | 0.531567 | tig0022882:-7861 | None:intergenic |
| TCTGTTGTTTATGAATAGAA+TGG | 0.532440 | tig0022882:-4141 | None:intergenic |
| GATAGATACCGTTTGTGTTG+TGG | 0.535421 | tig0022882:-4229 | None:intergenic |
| GTGTTCTTACCACGAGGTGC+AGG | 0.539055 | tig0022882:-7905 | None:intergenic |
| CGTGGTCGTGATGCAGGCCG+TGG | 0.544023 | tig0022882:+8299 | Msa1402610:CDS |
| TCACCAAGGATGCGAGGAAG+GGG | 0.548570 | tig0022882:+7537 | Msa1402610:CDS |
| GAGCTGGATACATCCTCCAC+AGG | 0.550506 | tig0022882:+6391 | Msa1402610:CDS |
| CTCACCAAGGATGCGAGGAA+GGG | 0.551388 | tig0022882:+7536 | Msa1402610:CDS |
| GAATATGGTGATGGTTGGGA+TGG | 0.556459 | tig0022882:+7761 | Msa1402610:CDS |
| GTATGGAATATGGTGATGGT+TGG | 0.556815 | tig0022882:+7756 | Msa1402610:CDS |
| GGCATCAGAGTAGGGTTATG+TGG | 0.556897 | tig0022882:-4102 | None:intergenic |
| ACACATCTGGACCTTCCCAA+TGG | 0.559822 | tig0022882:-4049 | None:intergenic |
| TGTATATGTTCAGTTAGAAG+AGG | 0.563687 | tig0022882:+8356 | Msa1402610:three_prime_UTR |
| GATGGTGGACGTGGCTATGG+TGG | 0.564025 | tig0022882:+7779 | Msa1402610:CDS |
| GGAAGAAGGCCTTCTTCTAG+TGG | 0.564318 | tig0022882:-6225 | None:intergenic |
| GCCACATACGCCCATTGGGA+AGG | 0.565235 | tig0022882:+4038 | None:intergenic |
| CAACTGATATAACTGACACA+TGG | 0.565866 | tig0022882:+6199 | Msa1402610:CDS |
| GACGTGGCTATGGTGGCAGA+GGG | 0.566506 | tig0022882:+7786 | Msa1402610:CDS |
| AACTACAAAAGCAAAACTGC+AGG | 0.567514 | tig0022882:-8460 | None:intergenic |
| CTGCATCACGACCACGCCCA+CGG | 0.570971 | tig0022882:-8292 | None:intergenic |
| ATACCGTTTGTGTTGTGGGT+GGG | 0.571178 | tig0022882:-4224 | None:intergenic |
| AGAGGGCGCGTCCGTGCATG+GGG | 0.580204 | tig0022882:+7803 | Msa1402610:CDS |
| GTTACTAACTTGGAAAAGAG+TGG | 0.580916 | tig0022882:-4478 | None:intergenic |
| AGAGTAGGGTTATGTGGTCG+CGG | 0.583846 | tig0022882:-4096 | None:intergenic |
| TGCAGGCCGAGGTCGTGGAA+GGG | 0.584745 | tig0022882:+8262 | Msa1402610:intron |
| TGAAATTGTTGTCAAAGCAA+TGG | 0.584923 | tig0022882:+6007 | Msa1402610:CDS |
| AATGAATATGAAGACGAAGG+AGG | 0.585192 | tig0022882:+7419 | Msa1402610:CDS |
| TCCTTCCTTGAGTGGTAATG+CGG | 0.591117 | tig0022882:-4431 | None:intergenic |
| ACTTGATCAGCAGGAAGAGG+AGG | 0.596674 | tig0022882:-7386 | None:intergenic |
| TTCTTACCACGAGGTGCAGG+TGG | 0.600530 | tig0022882:-7902 | None:intergenic |
| AACTGATATAACTGACACAT+GGG | 0.600887 | tig0022882:+6200 | Msa1402610:CDS |
| GATACCGTTTGTGTTGTGGG+TGG | 0.602155 | tig0022882:-4225 | None:intergenic |
| GAGATCCGCATTACCACTCA+AGG | 0.607382 | tig0022882:+4426 | Msa1402610:CDS |
| ACATGGGAACCACTAGAAGA+AGG | 0.607454 | tig0022882:+6216 | Msa1402610:CDS |
| GATGGATAGGTACCAGAGGG+TGG | 0.622819 | tig0022882:+4368 | Msa1402610:intron |
| TCCGCATTACCACTCAAGGA+AGG | 0.635560 | tig0022882:+4430 | Msa1402610:CDS |
| GAAGGCTCACCAAGGATGCG+AGG | 0.637231 | tig0022882:+7531 | Msa1402610:intron |
| GTGCAGCTGTCTGATCACCT+GGG | 0.641232 | tig0022882:+8321 | Msa1402610:exon |
| TTGAATGAATATGAAGACGA+AGG | 0.641784 | tig0022882:+7416 | Msa1402610:CDS |
| TTTATAGGAATGTACAATGG+GGG | 0.652876 | tig0022882:+7734 | Msa1402610:intron |
| GAAAAGCATGACCCCATGCA+CGG | 0.654179 | tig0022882:-7814 | None:intergenic |
| TGAAAGTACATACCCTGTGG+AGG | 0.656547 | tig0022882:-6404 | None:intergenic |
| TTCAGATGGATAGGTACCAG+AGG | 0.660290 | tig0022882:+4364 | Msa1402610:intron |
| TCAGATGGATAGGTACCAGA+GGG | 0.661722 | tig0022882:+4365 | Msa1402610:intron |
| TTGAAACAGAAGGCTCACCA+AGG | 0.665147 | tig0022882:+7523 | Msa1402610:intron |
| AGCTGGATACATCCTCCACA+GGG | 0.668533 | tig0022882:+6392 | Msa1402610:CDS |
| CTTTATAGGAATGTACAATG+GGG | 0.683519 | tig0022882:+7733 | Msa1402610:intron |
| GATGCACCACCTGCACCTCG+TGG | 0.692747 | tig0022882:+7896 | Msa1402610:CDS |
| GTGATCAGACAGCTGCACCA+CGG | 0.695771 | tig0022882:-8316 | None:intergenic |
| GAAGGTCCAGATGTGTTAAG+CGG | 0.700508 | tig0022882:+4056 | Msa1402610:five_prime_UTR |
| ATACATGACAACCAACACCC+AGG | 0.707107 | tig0022882:-8338 | None:intergenic |
| TAACAAATAACTAAGCAGAG+AGG | 0.714531 | tig0022882:-8382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGAAAGAAATTTTTAAA+GGG | - | tig0022882:4915-4934 | None:intergenic | 10.0% |
| !!! | AAATTGAAAGAAATTTTTAA+AGG | - | tig0022882:4916-4935 | None:intergenic | 10.0% |
| !!! | TAAAAATTTCTTTCAATTTT+TGG | + | tig0022882:4917-4936 | Msa1402610:intron | 10.0% |
| !!! | TATTAACTAATGATATTTTT+TGG | - | tig0022882:5058-5077 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTTATTCTTTGT+TGG | + | tig0022882:7319-7338 | Msa1402610:intron | 10.0% |
| !!! | GTTATTAAAACTTGAATTTT+TGG | - | tig0022882:4830-4849 | None:intergenic | 15.0% |
| !!! | TTTAACCCTTTAATTTTTAA+GGG | - | tig0022882:4853-4872 | None:intergenic | 15.0% |
| !!! | ATTTAACCCTTTAATTTTTA+AGG | - | tig0022882:4854-4873 | None:intergenic | 15.0% |
| !! | ATTGAAAACAAAAAGTTTAA+AGG | - | tig0022882:4944-4963 | None:intergenic | 15.0% |
| !! | AAAATTACTTTACTTGAATT+CGG | + | tig0022882:8116-8135 | Msa1402610:intron | 15.0% |
| !!! | ACATTTTTCATATAGAAATT+AGG | + | tig0022882:8581-8600 | Msa1402610:three_prime_UTR | 15.0% |
| !! | GTATTAATTGAATGAATCTA+GGG | - | tig0022882:4290-4309 | None:intergenic | 20.0% |
| !! | AGTATTAATTGAATGAATCT+AGG | - | tig0022882:4291-4310 | None:intergenic | 20.0% |
| !! | TTAAGTTATTGTTACTAACT+TGG | - | tig0022882:4491-4510 | None:intergenic | 20.0% |
| !!! | AAAACTTGAATTTTTGGTTT+AGG | - | tig0022882:4824-4843 | None:intergenic | 20.0% |
| !! | AATAACCCCTTAAAAATTAA+AGG | + | tig0022882:4844-4863 | Msa1402610:intron | 20.0% |
| !! | ATAACCCCTTAAAAATTAAA+GGG | + | tig0022882:4845-4864 | Msa1402610:intron | 20.0% |
| !!! | TTAACCCTTTAATTTTTAAG+GGG | - | tig0022882:4852-4871 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACACTAAAGCA+GGG | - | tig0022882:4973-4992 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACACTAAAGC+AGG | - | tig0022882:4974-4993 | None:intergenic | 20.0% |
| !! | ATGTAACAAAAGAAGTTATT+TGG | - | tig0022882:5022-5041 | None:intergenic | 20.0% |
| !!! | TTTTATGACATATAACTGAT+AGG | - | tig0022882:5195-5214 | None:intergenic | 20.0% |
| !! | ATTGAAATCAGAAAATTTAG+AGG | + | tig0022882:5253-5272 | Msa1402610:intron | 20.0% |
| !! | ATTAAGTAAACATTAACCAA+CGG | - | tig0022882:5864-5883 | None:intergenic | 20.0% |
| !! | GCTAAATATATAGTTAAGAA+TGG | + | tig0022882:6681-6700 | Msa1402610:intron | 20.0% |
| !!! | AATAATTTTTATCTTGCTAC+AGG | + | tig0022882:6717-6736 | Msa1402610:intron | 20.0% |
| !! | TTCGATATTAAAAAGACAAA+GGG | - | tig0022882:6924-6943 | None:intergenic | 20.0% |
| !!! | GTTTATGTATTTTAGAAACA+AGG | + | tig0022882:6953-6972 | Msa1402610:intron | 20.0% |
| !! | TAAAGATAAAATAAGTACAG+AGG | - | tig0022882:7133-7152 | None:intergenic | 20.0% |
| !!! | CTGTACTTATTTTATCTTTA+TGG | + | tig0022882:7133-7152 | Msa1402610:intron | 20.0% |
| !!! | TCTGTTTTCTGTAATTATTA+AGG | + | tig0022882:7227-7246 | Msa1402610:intron | 20.0% |
| !!! | AACTATAATTTTGAAACAGA+AGG | + | tig0022882:7513-7532 | Msa1402610:intron | 20.0% |
| !! | AAAATAAGAAGATAACACAA+GGG | - | tig0022882:8177-8196 | None:intergenic | 20.0% |
| !!! | TCTATCTATACTTTTAAGTT+AGG | + | tig0022882:8499-8518 | Msa1402610:three_prime_UTR | 20.0% |
| !! | TCTGTTGTTTATGAATAGAA+TGG | - | tig0022882:4144-4163 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTCAATTCAGA+TGG | + | tig0022882:4350-4369 | Msa1402610:intron | 25.0% |
| ! | AAAGCATATAGAACAAAATG+TGG | - | tig0022882:4732-4751 | None:intergenic | 25.0% |
| !! | AAAAAGGTATAAAGGATACA+AGG | - | tig0022882:4801-4820 | None:intergenic | 25.0% |
| !!! | GAATTTTTGGTTTAGGAAAA+AGG | - | tig0022882:4817-4836 | None:intergenic | 25.0% |
| ! | GTAAAGGTGATATATTTAGA+GGG | - | tig0022882:4884-4903 | None:intergenic | 25.0% |
| !! | ACAAAAATTCCTTCGATTTT+TGG | - | tig0022882:5280-5299 | None:intergenic | 25.0% |
| !! | AAAATCGAAGGAATTTTTGT+AGG | + | tig0022882:5280-5299 | Msa1402610:intron | 25.0% |
| !! | AAATCGAAGGAATTTTTGTA+GGG | + | tig0022882:5281-5300 | Msa1402610:intron | 25.0% |
| !!! | CTTAAAGTTGGTATATTTAG+AGG | + | tig0022882:5311-5330 | Msa1402610:intron | 25.0% |
| !!! | TGGTTTTATATAAATGTGAC+CGG | - | tig0022882:5446-5465 | None:intergenic | 25.0% |
| ! | AAATACAATAAACCTAGACA+AGG | + | tig0022882:5491-5510 | Msa1402610:intron | 25.0% |
| ! | AATACAATAAACCTAGACAA+GGG | + | tig0022882:5492-5511 | Msa1402610:intron | 25.0% |
| ! | AGTGAAAATAAGAAAGTGAT+GGG | - | tig0022882:5808-5827 | None:intergenic | 25.0% |
| ! | AAGTGAAAATAAGAAAGTGA+TGG | - | tig0022882:5809-5828 | None:intergenic | 25.0% |
| ! | AAAATAACTAAGCCTATCAA+GGG | - | tig0022882:6485-6504 | None:intergenic | 25.0% |
| ! | AAAAATAACTAAGCCTATCA+AGG | - | tig0022882:6486-6505 | None:intergenic | 25.0% |
| ! | CAAATCTTACAGAATTACAA+CGG | - | tig0022882:6646-6665 | None:intergenic | 25.0% |
| ! | GTTGTAATTCTGTAAGATTT+GGG | + | tig0022882:6645-6664 | Msa1402610:intron | 25.0% |
| ! | TTGTAATTCTGTAAGATTTG+GGG | + | tig0022882:6646-6665 | Msa1402610:intron | 25.0% |
| !!! | TTTTAAAAGCTCAGAAATTG+TGG | - | tig0022882:6821-6840 | None:intergenic | 25.0% |
| ! | TCGATATTAAAAAGACAAAG+GGG | - | tig0022882:6923-6942 | None:intergenic | 25.0% |
| ! | GTTCGATATTAAAAAGACAA+AGG | - | tig0022882:6925-6944 | None:intergenic | 25.0% |
| ! | TTACTTGAATGTGTTATCTT+TGG | + | tig0022882:7001-7020 | Msa1402610:intron | 25.0% |
| !! | TTTGATTGCTATTAATGCAT+TGG | + | tig0022882:7186-7205 | Msa1402610:intron | 25.0% |
| ! | TTTGCTTACTTAACTGTAAT+CGG | + | tig0022882:7614-7633 | Msa1402610:intron | 25.0% |
| ! | CTACACAATCTATTCTTTAT+AGG | + | tig0022882:7719-7738 | Msa1402610:intron | 25.0% |
| ! | TTCTTTATAGGAATGTACAA+TGG | + | tig0022882:7731-7750 | Msa1402610:intron | 25.0% |
| ! | TCTTTATAGGAATGTACAAT+GGG | + | tig0022882:7732-7751 | Msa1402610:intron | 25.0% |
| !! | TATCTTGAAACCTGAATTTT+GGG | - | tig0022882:7936-7955 | None:intergenic | 25.0% |
| !! | ATATCTTGAAACCTGAATTT+TGG | - | tig0022882:7937-7956 | None:intergenic | 25.0% |
| ! | CAAAATAAGAAGATAACACA+AGG | - | tig0022882:8178-8197 | None:intergenic | 25.0% |
| !!! | CTTGTGTTATCTTCTTATTT+TGG | + | tig0022882:8176-8195 | Msa1402610:intron | 25.0% |
| !!! | TGTTAGATTTGCTTTTAGTT+TGG | + | tig0022882:8400-8419 | Msa1402610:three_prime_UTR | 25.0% |
| ! | TTTTGTCAATTCAGATGGAT+AGG | + | tig0022882:4355-4374 | Msa1402610:intron | 30.0% |
| TTAATTGGACTATCTGCTTT+GGG | - | tig0022882:4399-4418 | None:intergenic | 30.0% | |
| ATTCAATGTCAATACATGCA+TGG | + | tig0022882:4572-4591 | Msa1402610:intron | 30.0% | |
| TTCAATGTCAATACATGCAT+GGG | + | tig0022882:4573-4592 | Msa1402610:intron | 30.0% | |
| !! | AAGAAGTGTATGTGTTTTAG+AGG | + | tig0022882:4610-4629 | Msa1402610:intron | 30.0% |
| CTGAAAACACAAATTTCACT+TGG | - | tig0022882:4695-4714 | None:intergenic | 30.0% | |
| ! | GGTTTAGGAAAAAGGTATAA+AGG | - | tig0022882:4809-4828 | None:intergenic | 30.0% |
| CGTAAAGGTGATATATTTAG+AGG | - | tig0022882:4885-4904 | None:intergenic | 30.0% | |
| TTAAAGGGACTAAAACGTAA+AGG | - | tig0022882:4900-4919 | None:intergenic | 30.0% | |
| ATAGGACGTTAAAATAGCAT+TGG | - | tig0022882:5177-5196 | None:intergenic | 30.0% | |
| TGTCATAAAAAAATGTCGCT+TGG | + | tig0022882:5205-5224 | Msa1402610:intron | 30.0% | |
| TAGGGACTAAAACTTAAAGT+TGG | + | tig0022882:5299-5318 | Msa1402610:intron | 30.0% | |
| GATGCTATGTTTCAATCATT+TGG | - | tig0022882:5466-5485 | None:intergenic | 30.0% | |
| ATGATTGAAACATAGCATCA+TGG | + | tig0022882:5467-5486 | Msa1402610:intron | 30.0% | |
| ! | ATCACTTCTGTTTTCTATCT+TGG | - | tig0022882:5632-5651 | None:intergenic | 30.0% |
| AAGATAGAAAACAGAAGTGA+TGG | + | tig0022882:5631-5650 | Msa1402610:intron | 30.0% | |
| !!! | TGTCTAATATGCCATTTTTG+TGG | - | tig0022882:5743-5762 | None:intergenic | 30.0% |
| TGAAAATAAGAAAGTGATGG+GGG | - | tig0022882:5806-5825 | None:intergenic | 30.0% | |
| GTGAAAATAAGAAAGTGATG+GGG | - | tig0022882:5807-5826 | None:intergenic | 30.0% | |
| TGAAATTGTTGTCAAAGCAA+TGG | + | tig0022882:6007-6026 | Msa1402610:CDS | 30.0% | |
| GAAATTGTTGTCAAAGCAAT+GGG | + | tig0022882:6008-6027 | Msa1402610:CDS | 30.0% | |
| AATGATTACCGAGCTAATAA+AGG | + | tig0022882:6052-6071 | Msa1402610:CDS | 30.0% | |
| AACTGATATAACTGACACAT+GGG | + | tig0022882:6200-6219 | Msa1402610:CDS | 30.0% | |
| TCAAATGATTTATGTGTGCA+TGG | + | tig0022882:6280-6299 | Msa1402610:intron | 30.0% | |
| CAAATGATTTATGTGTGCAT+GGG | + | tig0022882:6281-6300 | Msa1402610:intron | 30.0% | |
| CGTTGTAATTCTGTAAGATT+TGG | + | tig0022882:6644-6663 | Msa1402610:intron | 30.0% | |
| TGTTGAATCAGAATTGAGAA+AGG | + | tig0022882:6778-6797 | Msa1402610:intron | 30.0% | |
| ATTGTGGTTCAATAAAACCT+TGG | - | tig0022882:6805-6824 | None:intergenic | 30.0% | |
| CATACTTGTAAATCATGACT+GGG | - | tig0022882:7253-7272 | None:intergenic | 30.0% | |
| TCGTCTTCATATTCATTCAA+AGG | - | tig0022882:7416-7435 | None:intergenic | 30.0% | |
| TTGAATGAATATGAAGACGA+AGG | + | tig0022882:7416-7435 | Msa1402610:CDS | 30.0% | |
| CTTTATAGGAATGTACAATG+GGG | + | tig0022882:7733-7752 | Msa1402610:intron | 30.0% | |
| TTTATAGGAATGTACAATGG+GGG | + | tig0022882:7734-7753 | Msa1402610:intron | 30.0% | |
| ! | ATCTTGAAACCTGAATTTTG+GGG | - | tig0022882:7935-7954 | None:intergenic | 30.0% |
| TCTTATGTAGCCTGATTTAA+TGG | - | tig0022882:8097-8116 | None:intergenic | 30.0% | |
| AAGGAAATTAACATACGACA+AGG | - | tig0022882:8152-8171 | None:intergenic | 30.0% | |
| TTGTCGTATGTTAATTTCCT+TGG | + | tig0022882:8151-8170 | Msa1402610:intron | 30.0% | |
| GTCGTTCTATACATTACTTA+AGG | + | tig0022882:8211-8230 | Msa1402610:intron | 30.0% | |
| TGTATATGTTCAGTTAGAAG+AGG | + | tig0022882:8356-8375 | Msa1402610:three_prime_UTR | 30.0% | |
| TAACAAATAACTAAGCAGAG+AGG | - | tig0022882:8385-8404 | None:intergenic | 30.0% | |
| !!! | TCTATACTTTTAAGTTAGGC+AGG | + | tig0022882:8503-8522 | Msa1402610:three_prime_UTR | 30.0% |
| ATTATACCGCTTAACACATC+TGG | - | tig0022882:4065-4084 | None:intergenic | 35.0% | |
| GATGTGTTAAGCGGTATAAT+AGG | + | tig0022882:4065-4084 | Msa1402610:five_prime_UTR | 35.0% | |
| !! | ATGAAAAAGGCATCAGAGTA+GGG | - | tig0022882:4113-4132 | None:intergenic | 35.0% |
| AATGGTGAAGCAGATGAAAA+AGG | - | tig0022882:4126-4145 | None:intergenic | 35.0% | |
| ATAGATACCGTTTGTGTTGT+GGG | - | tig0022882:4231-4250 | None:intergenic | 35.0% | |
| GTTAATTGGACTATCTGCTT+TGG | - | tig0022882:4400-4419 | None:intergenic | 35.0% | |
| GTTACTAACTTGGAAAAGAG+TGG | - | tig0022882:4481-4500 | None:intergenic | 35.0% | |
| AACCAAAGAACAAGCAAATC+AGG | - | tig0022882:4648-4667 | None:intergenic | 35.0% | |
| GTTCTTTGGTTGAAATAGCT+TGG | + | tig0022882:4657-4676 | Msa1402610:intron | 35.0% | |
| TTGGTTGAAATAGCTTGGAT+TGG | + | tig0022882:4662-4681 | Msa1402610:intron | 35.0% | |
| GGAACATGAAACGTAAACAT+TGG | - | tig0022882:5001-5020 | None:intergenic | 35.0% | |
| TTTAGAGGACCAAAAATCGA+AGG | + | tig0022882:5268-5287 | Msa1402610:intron | 35.0% | |
| ATTTCTATTCACCCTTGTCT+AGG | - | tig0022882:5506-5525 | None:intergenic | 35.0% | |
| ACAATATCATGTAAAGAGCC+TGG | + | tig0022882:5526-5545 | Msa1402610:intron | 35.0% | |
| ! | ATTGTTACTCTCCTTTTACC+AGG | - | tig0022882:5547-5566 | None:intergenic | 35.0% |
| !! | CTGACAGTCTATTTCTATCT+TGG | - | tig0022882:5680-5699 | None:intergenic | 35.0% |
| ! | CATTTTTGTGGAGTTGACTA+AGG | - | tig0022882:5731-5750 | None:intergenic | 35.0% |
| CTTAGTCAACTCCACAAAAA+TGG | + | tig0022882:5729-5748 | Msa1402610:intron | 35.0% | |
| ! | GTATATTTTCGTTCTTCCGT+TGG | + | tig0022882:5845-5864 | Msa1402610:intron | 35.0% |
| ! | TCAACATGTGTGTTTTCTGT+AGG | + | tig0022882:5971-5990 | Msa1402610:intron | 35.0% |
| ATTACCGAGCTAATAAAGGT+GGG | + | tig0022882:6056-6075 | Msa1402610:intron | 35.0% | |
| GATATCTCTATCCAGTGAAT+TGG | + | tig0022882:6084-6103 | Msa1402610:intron | 35.0% | |
| AAAAATGCCAACCAATTCAC+TGG | - | tig0022882:6098-6117 | None:intergenic | 35.0% | |
| CTTTCTACTTGTTTCAGAGA+AGG | + | tig0022882:6142-6161 | Msa1402610:intron | 35.0% | |
| TTGTTTCAGAGAAGGATTGT+TGG | + | tig0022882:6150-6169 | Msa1402610:intron | 35.0% | |
| CAACTGATATAACTGACACA+TGG | + | tig0022882:6199-6218 | Msa1402610:CDS | 35.0% | |
| AGAGGAAACAAAAAGCCATA+CGG | - | tig0022882:6249-6268 | None:intergenic | 35.0% | |
| CATTTGACAAGATAGCATAG+AGG | - | tig0022882:6267-6286 | None:intergenic | 35.0% | |
| ! | TGTGTTTTACTTGCTCAGTT+TGG | + | tig0022882:6321-6340 | Msa1402610:intron | 35.0% |
| TGTTCACAAAACAAAGAGAC+GGG | - | tig0022882:6900-6919 | None:intergenic | 35.0% | |
| GTGTTCACAAAACAAAGAGA+CGG | - | tig0022882:6901-6920 | None:intergenic | 35.0% | |
| GCAATCAAAAGCGAAACTAA+AGG | - | tig0022882:7175-7194 | None:intergenic | 35.0% | |
| CCATACTTGTAAATCATGAC+TGG | - | tig0022882:7254-7273 | None:intergenic | 35.0% | |
| CCAGTCATGATTTACAAGTA+TGG | + | tig0022882:7251-7270 | Msa1402610:intron | 35.0% | |
| ! | AAAGGTTTTACTTGATCAGC+AGG | - | tig0022882:7398-7417 | None:intergenic | 35.0% |
| AATGAATATGAAGACGAAGG+AGG | + | tig0022882:7419-7438 | Msa1402610:CDS | 35.0% | |
| !! | TATGGAATATGGTGATGGTT+GGG | + | tig0022882:7757-7776 | Msa1402610:CDS | 35.0% |
| GATTAATACCAGTTATGTGC+TGG | + | tig0022882:8005-8024 | Msa1402610:intron | 35.0% | |
| CATGATGCTTCCATTAAATC+AGG | + | tig0022882:8084-8103 | Msa1402610:intron | 35.0% | |
| !! | ATTTCTGTTTGATGATGTGC+AGG | + | tig0022882:8245-8264 | Msa1402610:intron | 35.0% |
| AACTACAAAAGCAAAACTGC+AGG | - | tig0022882:8463-8482 | None:intergenic | 35.0% | |
| !! | GATGAAAAAGGCATCAGAGT+AGG | - | tig0022882:4114-4133 | None:intergenic | 40.0% |
| GATAGATACCGTTTGTGTTG+TGG | - | tig0022882:4232-4251 | None:intergenic | 40.0% | |
| CGGATCTCATTCTCGTTAAT+TGG | - | tig0022882:4414-4433 | None:intergenic | 40.0% | |
| !! | TGCCTGATTTGCTTGTTCTT+TGG | + | tig0022882:4643-4662 | Msa1402610:intron | 40.0% |
| AGTGTACTGTCTAGAAAGAC+CGG | + | tig0022882:5424-5443 | Msa1402610:intron | 40.0% | |
| CATGTAAAGAGCCTGGTAAA+AGG | + | tig0022882:5533-5552 | Msa1402610:intron | 40.0% | |
| ! | AAATAGACTGTCAGAGCATC+TGG | + | tig0022882:5686-5705 | Msa1402610:intron | 40.0% |
| ! | CTGGTACCATCTTAGGTTTT+AGG | + | tig0022882:5705-5724 | Msa1402610:intron | 40.0% |
| CTAAGGCCTAAAACCTAAGA+TGG | - | tig0022882:5714-5733 | None:intergenic | 40.0% | |
| ACACTATCTTCAGTCGTTGT+GGG | + | tig0022882:5760-5779 | Msa1402610:intron | 40.0% | |
| ! | AAATAAGAAAGTGATGGGGG+AGG | - | tig0022882:5803-5822 | None:intergenic | 40.0% |
| ! | GTGTGTTTTCTGTAGGAGAA+AGG | + | tig0022882:5978-5997 | Msa1402610:intron | 40.0% |
| GATTACCGAGCTAATAAAGG+TGG | + | tig0022882:6055-6074 | Msa1402610:intron | 40.0% | |
| TTACCGAGCTAATAAAGGTG+GGG | + | tig0022882:6057-6076 | Msa1402610:intron | 40.0% | |
| TCTCTATCCAGTGAATTGGT+TGG | + | tig0022882:6088-6107 | Msa1402610:intron | 40.0% | |
| CTGCATCAGAACACTCAAAT+TGG | + | tig0022882:6174-6193 | Msa1402610:CDS | 40.0% | |
| ACAAAAAGCCATACGGAAGA+AGG | - | tig0022882:6242-6261 | None:intergenic | 40.0% | |
| TACGTTGTCAAAGAAAGAGC+TGG | + | tig0022882:6375-6394 | Msa1402610:CDS | 40.0% | |
| ! | TCATGAAAGTACATACCCTG+TGG | - | tig0022882:6410-6429 | None:intergenic | 40.0% |
| TAGATGCCTTATCCCTTGAT+AGG | + | tig0022882:6470-6489 | Msa1402610:intron | 40.0% | |
| ACTAAGCCTATCAAGGGATA+AGG | - | tig0022882:6479-6498 | None:intergenic | 40.0% | |
| CTTACAGAATTACAACGGCT+AGG | - | tig0022882:6641-6660 | None:intergenic | 40.0% | |
| ! | TTCTGTAAGATTTGGGGTCA+CGG | + | tig0022882:6652-6671 | Msa1402610:intron | 40.0% |
| TCAGAATTGAGAAAGGACCA+AGG | + | tig0022882:6785-6804 | Msa1402610:intron | 40.0% | |
| ! | ACCTTTGACTTCAAACAGAG+CGG | + | tig0022882:7087-7106 | Msa1402610:intron | 40.0% |
| GATATCTGCATGAGGAAATC+AGG | - | tig0022882:7364-7383 | None:intergenic | 40.0% | |
| TTTACTTGATCAGCAGGAAG+AGG | - | tig0022882:7392-7411 | None:intergenic | 40.0% | |
| ! | TACAATGGGGGTATGGAATA+TGG | + | tig0022882:7746-7765 | Msa1402610:CDS | 40.0% |
| !! | GTATGGAATATGGTGATGGT+TGG | + | tig0022882:7756-7775 | Msa1402610:CDS | 40.0% |
| ! | TAAGTTAGGCAGGTTGAGTT+AGG | + | tig0022882:8513-8532 | Msa1402610:three_prime_UTR | 40.0% |
| GAAGGTCCAGATGTGTTAAG+CGG | + | tig0022882:4056-4075 | Msa1402610:five_prime_UTR | 45.0% | |
| ! | TTTGTGTTGTGGGTGGGTTT+GGG | - | tig0022882:4221-4240 | None:intergenic | 45.0% |
| AAACCCACCCACAACACAAA+CGG | + | tig0022882:4221-4240 | Msa1402610:five_prime_UTR | 45.0% | |
| ATACCGTTTGTGTTGTGGGT+GGG | - | tig0022882:4227-4246 | None:intergenic | 45.0% | |
| TTCAGATGGATAGGTACCAG+AGG | + | tig0022882:4364-4383 | Msa1402610:intron | 45.0% | |
| TCAGATGGATAGGTACCAGA+GGG | + | tig0022882:4365-4384 | Msa1402610:intron | 45.0% | |
| ! | TCCTTCCTTGAGTGGTAATG+CGG | - | tig0022882:4434-4453 | None:intergenic | 45.0% |
| GTTTCTCATCCTTCCTTGAG+TGG | - | tig0022882:4442-4461 | None:intergenic | 45.0% | |
| ! | AGAGCATCTGGTACCATCTT+AGG | + | tig0022882:5698-5717 | Msa1402610:intron | 45.0% |
| GACACTATCTTCAGTCGTTG+TGG | + | tig0022882:5759-5778 | Msa1402610:intron | 45.0% | |
| ! | AAGTGATGGGGGAGGATATT+GGG | - | tig0022882:5795-5814 | None:intergenic | 45.0% |
| ! | AAAGTGATGGGGGAGGATAT+TGG | - | tig0022882:5796-5815 | None:intergenic | 45.0% |
| TACCGAGCTAATAAAGGTGG+GGG | + | tig0022882:6058-6077 | Msa1402610:intron | 45.0% | |
| ACATGGGAACCACTAGAAGA+AGG | + | tig0022882:6216-6235 | Msa1402610:CDS | 45.0% | |
| ! | GTGCATGGGTGTGATTGTTT+TGG | + | tig0022882:6295-6314 | Msa1402610:intron | 45.0% |
| ! | TGAAAGTACATACCCTGTGG+AGG | - | tig0022882:6407-6426 | None:intergenic | 45.0% |
| ACAAAACAAAGAGACGGGTG+AGG | - | tig0022882:6895-6914 | None:intergenic | 45.0% | |
| ! | ACCGCTCTGTTTGAAGTCAA+AGG | - | tig0022882:7091-7110 | None:intergenic | 45.0% |
| !! | AGGAGGTTGATATCTGCATG+AGG | - | tig0022882:7372-7391 | None:intergenic | 45.0% |
| TTGAAACAGAAGGCTCACCA+AGG | + | tig0022882:7523-7542 | Msa1402610:intron | 45.0% | |
| AGGAATGTACAATGGGGGTA+TGG | + | tig0022882:7739-7758 | Msa1402610:intron | 45.0% | |
| !! | GAATATGGTGATGGTTGGGA+TGG | + | tig0022882:7761-7780 | Msa1402610:CDS | 45.0% |
| AACACTTGGCCCCAAAATTC+AGG | + | tig0022882:7923-7942 | Msa1402610:intron | 45.0% | |
| AGAAGATAACACAAGGGCCA+AGG | - | tig0022882:8171-8190 | None:intergenic | 45.0% | |
| ATACATGACAACCAACACCC+AGG | - | tig0022882:8341-8360 | None:intergenic | 45.0% | |
| CACATCTGGACCTTCCCAAT+GGG | - | tig0022882:4051-4070 | None:intergenic | 50.0% | |
| ACACATCTGGACCTTCCCAA+TGG | - | tig0022882:4052-4071 | None:intergenic | 50.0% | |
| AGAGTAGGGTTATGTGGTCG+CGG | - | tig0022882:4099-4118 | None:intergenic | 50.0% | |
| GGCATCAGAGTAGGGTTATG+TGG | - | tig0022882:4105-4124 | None:intergenic | 50.0% | |
| TTTGGGCGAATACGGGGATA+TGG | - | tig0022882:4204-4223 | None:intergenic | 50.0% | |
| ! | GTTTGTGTTGTGGGTGGGTT+TGG | - | tig0022882:4222-4241 | None:intergenic | 50.0% |
| GATACCGTTTGTGTTGTGGG+TGG | - | tig0022882:4228-4247 | None:intergenic | 50.0% | |
| GAGATCCGCATTACCACTCA+AGG | + | tig0022882:4426-4445 | Msa1402610:CDS | 50.0% | |
| TCCGCATTACCACTCAAGGA+AGG | + | tig0022882:4430-4449 | Msa1402610:CDS | 50.0% | |
| ! | TACATGCATGGGTGTCGTGT+TGG | + | tig0022882:4584-4603 | Msa1402610:intron | 50.0% |
| TCTTCAGTCGTTGTGGGACT+TGG | + | tig0022882:5766-5785 | Msa1402610:intron | 50.0% | |
| ACCGAGCTAATAAAGGTGGG+GGG | + | tig0022882:6059-6078 | Msa1402610:intron | 50.0% | |
| ACCCCCCACCTTTATTAGCT+CGG | - | tig0022882:6063-6082 | None:intergenic | 50.0% | |
| GGAAGAAGGCCTTCTTCTAG+TGG | - | tig0022882:6228-6247 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTCTTCCGTA+TGG | + | tig0022882:6231-6250 | Msa1402610:intron | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | + | tig0022882:6392-6411 | Msa1402610:CDS | 50.0% | |
| AACAAAGAGACGGGTGAGGT+GGG | - | tig0022882:6891-6910 | None:intergenic | 50.0% | |
| AAACAAAGAGACGGGTGAGG+TGG | - | tig0022882:6892-6911 | None:intergenic | 50.0% | |
| ACTTGATCAGCAGGAAGAGG+AGG | - | tig0022882:7389-7408 | None:intergenic | 50.0% | |
| ! | GGGGGTATGGAATATGGTGA+TGG | + | tig0022882:7752-7771 | Msa1402610:CDS | 50.0% |
| !! | TATGGTGATGGTTGGGATGG+TGG | + | tig0022882:7764-7783 | Msa1402610:CDS | 50.0% |
| ! | GAAAAGCATGACCCCATGCA+CGG | - | tig0022882:7817-7836 | None:intergenic | 50.0% |
| CCATAGTCATACTGCCCAAC+TGG | - | tig0022882:7869-7888 | None:intergenic | 50.0% | |
| CCAGTTGGGCAGTATGACTA+TGG | + | tig0022882:7866-7885 | Msa1402610:CDS | 50.0% | |
| CACCTCGTGGTAAGAACACT+TGG | + | tig0022882:7909-7928 | Msa1402610:intron | 50.0% | |
| TCGCTATGCCAGCACATAAC+TGG | - | tig0022882:8016-8035 | None:intergenic | 50.0% | |
| ! | TGGGTGGGTTTGGGCGAATA+CGG | - | tig0022882:4212-4231 | None:intergenic | 55.0% |
| GATGGATAGGTACCAGAGGG+TGG | + | tig0022882:4368-4387 | Msa1402610:intron | 55.0% | |
| ! | CTTTGGGTTTCTCCACCCTC+TGG | - | tig0022882:4383-4402 | None:intergenic | 55.0% |
| GAGCTGGATACATCCTCCAC+AGG | + | tig0022882:6391-6410 | Msa1402610:CDS | 55.0% | |
| GGTGAGGTGGGGGATAGATA+AGG | - | tig0022882:6879-6898 | None:intergenic | 55.0% | |
| ACAAAGAGACGGGTGAGGTG+GGG | - | tig0022882:6890-6909 | None:intergenic | 55.0% | |
| CTCACCAAGGATGCGAGGAA+GGG | + | tig0022882:7536-7555 | Msa1402610:CDS | 55.0% | |
| TCACCAAGGATGCGAGGAAG+GGG | + | tig0022882:7537-7556 | Msa1402610:CDS | 55.0% | |
| AAGGATGCGAGGAAGGGGAA+GGG | + | tig0022882:7542-7561 | Msa1402610:CDS | 55.0% | |
| ! | GCATGGGGTCATGCTTTTCG+TGG | + | tig0022882:7818-7837 | Msa1402610:CDS | 55.0% |
| ! | GGGGTCATGCTTTTCGTGGA+CGG | + | tig0022882:7822-7841 | Msa1402610:CDS | 55.0% |
| ! | GGGTCATGCTTTTCGTGGAC+GGG | + | tig0022882:7823-7842 | Msa1402610:CDS | 55.0% |
| ! | GGTCATGCTTTTCGTGGACG+GGG | + | tig0022882:7824-7843 | Msa1402610:CDS | 55.0% |
| ! | ATGCTTTTCGTGGACGGGGA+CGG | + | tig0022882:7828-7847 | Msa1402610:CDS | 55.0% |
| GTCATACTGCCCAACTGGCT+GGG | - | tig0022882:7864-7883 | None:intergenic | 55.0% | |
| AGTCATACTGCCCAACTGGC+TGG | - | tig0022882:7865-7884 | None:intergenic | 55.0% | |
| TTCTTACCACGAGGTGCAGG+TGG | - | tig0022882:7905-7924 | None:intergenic | 55.0% | |
| GTGTTCTTACCACGAGGTGC+AGG | - | tig0022882:7908-7927 | None:intergenic | 55.0% | |
| GGCCAAGTGTTCTTACCACG+AGG | - | tig0022882:7914-7933 | None:intergenic | 55.0% | |
| !! | GTTTGATGATGTGCAGGCCG+AGG | + | tig0022882:8251-8270 | Msa1402610:intron | 55.0% |
| GTGATCAGACAGCTGCACCA+CGG | - | tig0022882:8319-8338 | None:intergenic | 55.0% | |
| GTGCAGCTGTCTGATCACCT+GGG | + | tig0022882:8321-8340 | Msa1402610:exon | 55.0% | |
| CTGTCTGATCACCTGGGTGT+TGG | + | tig0022882:8327-8346 | Msa1402610:exon | 55.0% | |
| ! | GGTGGGTTTGGGCGAATACG+GGG | - | tig0022882:4210-4229 | None:intergenic | 60.0% |
| ! | GGGTGGGTTTGGGCGAATAC+GGG | - | tig0022882:4211-4230 | None:intergenic | 60.0% |
| CAAAGAGACGGGTGAGGTGG+GGG | - | tig0022882:6889-6908 | None:intergenic | 60.0% | |
| GAAGGCTCACCAAGGATGCG+AGG | + | tig0022882:7531-7550 | Msa1402610:intron | 60.0% | |
| GCTCACCAAGGATGCGAGGA+AGG | + | tig0022882:7535-7554 | Msa1402610:CDS | 60.0% | |
| CTTCCCCTTCCTCGCATCCT+TGG | - | tig0022882:7543-7562 | None:intergenic | 60.0% | |
| CAAGGATGCGAGGAAGGGGA+AGG | + | tig0022882:7541-7560 | Msa1402610:CDS | 60.0% | |
| AGGATGCGAGGAAGGGGAAG+GGG | + | tig0022882:7543-7562 | Msa1402610:CDS | 60.0% | |
| AAGGGGAAGGGGTCGTGGAA+GGG | + | tig0022882:7554-7573 | Msa1402610:CDS | 60.0% | |
| !! | GATGGTTGGGATGGTGGACG+TGG | + | tig0022882:7770-7789 | Msa1402610:CDS | 60.0% |
| !! | TGGGATGGTGGACGTGGCTA+TGG | + | tig0022882:7776-7795 | Msa1402610:CDS | 60.0% |
| !! | GATGGTGGACGTGGCTATGG+TGG | + | tig0022882:7779-7798 | Msa1402610:CDS | 60.0% |
| GACGTGGCTATGGTGGCAGA+GGG | + | tig0022882:7786-7805 | Msa1402610:CDS | 60.0% | |
| ! | TGCTTTTCGTGGACGGGGAC+GGG | + | tig0022882:7829-7848 | Msa1402610:CDS | 60.0% |
| GCTATGGTGCCCAGCCAGTT+GGG | + | tig0022882:7852-7871 | Msa1402610:CDS | 60.0% | |
| GGTGCAGCTGTCTGATCACC+TGG | + | tig0022882:8320-8339 | Msa1402610:exon | 60.0% | |
| GAAGGGGAAGGGGTCGTGGA+AGG | + | tig0022882:7553-7572 | Msa1402610:CDS | 65.0% | |
| AGGGGAAGGGGTCGTGGAAG+GGG | + | tig0022882:7555-7574 | Msa1402610:CDS | 65.0% | |
| AAGGGGTCGTGGAAGGGGCA+GGG | + | tig0022882:7560-7579 | Msa1402610:CDS | 65.0% | |
| AGGGGCAGGGGTAGAGGTAG+AGG | + | tig0022882:7573-7592 | Msa1402610:CDS | 65.0% | |
| GGACGTGGCTATGGTGGCAG+AGG | + | tig0022882:7785-7804 | Msa1402610:CDS | 65.0% | |
| ! | GCTTTTCGTGGACGGGGACG+GGG | + | tig0022882:7830-7849 | Msa1402610:CDS | 65.0% |
| GGCTATGGTGCCCAGCCAGT+TGG | + | tig0022882:7851-7870 | Msa1402610:CDS | 65.0% | |
| GATGCACCACCTGCACCTCG+TGG | + | tig0022882:7896-7915 | Msa1402610:CDS | 65.0% | |
| TGATGTGCAGGCCGAGGTCG+TGG | + | tig0022882:8257-8276 | Msa1402610:intron | 65.0% | |
| TGCAGGCCGAGGTCGTGGAA+GGG | + | tig0022882:8262-8281 | Msa1402610:intron | 65.0% | |
| CCCTTCCCCTTCCACGACCT+CGG | - | tig0022882:8271-8290 | None:intergenic | 65.0% | |
| CCGAGGTCGTGGAAGGGGAA+GGG | + | tig0022882:8268-8287 | Msa1402610:CDS | 65.0% | |
| CGAGGTCGTGGAAGGGGAAG+GGG | + | tig0022882:8269-8288 | Msa1402610:CDS | 65.0% | |
| CTGCATCACGACCACGCCCA+CGG | - | tig0022882:8295-8314 | None:intergenic | 65.0% | |
| CGAGGAAGGGGAAGGGGTCG+TGG | + | tig0022882:7549-7568 | Msa1402610:CDS | 70.0% | |
| GAAGGGGTCGTGGAAGGGGC+AGG | + | tig0022882:7559-7578 | Msa1402610:CDS | 70.0% | |
| AGGGGTCGTGGAAGGGGCAG+GGG | + | tig0022882:7561-7580 | Msa1402610:CDS | 70.0% | |
| CGTGGAAGGGGCAGGGGTAG+AGG | + | tig0022882:7567-7586 | Msa1402610:CDS | 70.0% | |
| ! | CAGAGGGCGCGTCCGTGCAT+GGG | + | tig0022882:7802-7821 | Msa1402610:CDS | 70.0% |
| ! | AGAGGGCGCGTCCGTGCATG+GGG | + | tig0022882:7803-7822 | Msa1402610:CDS | 70.0% |
| GTGCAGGCCGAGGTCGTGGA+AGG | + | tig0022882:8261-8280 | Msa1402610:intron | 70.0% | |
| GCAGGCCGAGGTCGTGGAAG+GGG | + | tig0022882:8263-8282 | Msa1402610:intron | 70.0% | |
| GCCGAGGTCGTGGAAGGGGA+AGG | + | tig0022882:8267-8286 | Msa1402610:CDS | 70.0% | |
| GTGGAAGGGGAAGGGGCCGT+GGG | + | tig0022882:8276-8295 | Msa1402610:CDS | 70.0% | |
| CGTGGGCGTGGTCGTGATGC+AGG | + | tig0022882:8293-8312 | Msa1402610:CDS | 70.0% | |
| CGTGGTCGTGATGCAGGCCG+TGG | + | tig0022882:8299-8318 | Msa1402610:CDS | 70.0% | |
| ! | GCAGAGGGCGCGTCCGTGCA+TGG | + | tig0022882:7801-7820 | Msa1402610:CDS | 75.0% |
| CGTGGACGGGGACGGGGCTA+TGG | + | tig0022882:7836-7855 | Msa1402610:CDS | 75.0% | |
| CGTGGAAGGGGAAGGGGCCG+TGG | + | tig0022882:8275-8294 | Msa1402610:CDS | 75.0% | |
| ! | AGGGGAAGGGGCCGTGGGCG+TGG | + | tig0022882:8281-8300 | Msa1402610:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022882 | gene | 4041 | 8648 | 4041 | ID=Msa1402610;Name=Msa1402610 |
| tig0022882 | mRNA | 4041 | 8648 | 4041 | ID=Msa1402610-mRNA-1;Parent=Msa1402610;Name=Msa1402610-mRNA-1;_AED=0.21;_eAED=0.21;_QI=202|0.87|0.77|1|1|1|9|314|245 |
| tig0022882 | exon | 4041 | 4242 | 4041 | ID=Msa1402610-mRNA-1:exon:19022;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 4369 | 4491 | 4369 | ID=Msa1402610-mRNA-1:exon:19023;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 5993 | 6073 | 5993 | ID=Msa1402610-mRNA-1:exon:19024;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 6159 | 6247 | 6159 | ID=Msa1402610-mRNA-1:exon:19025;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 6339 | 6413 | 6339 | ID=Msa1402610-mRNA-1:exon:19026;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 7379 | 7440 | 7379 | ID=Msa1402610-mRNA-1:exon:19027;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 7532 | 7594 | 7532 | ID=Msa1402610-mRNA-1:exon:19028;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 7741 | 7917 | 7741 | ID=Msa1402610-mRNA-1:exon:19029;Parent=Msa1402610-mRNA-1 |
| tig0022882 | exon | 8267 | 8648 | 8267 | ID=Msa1402610-mRNA-1:exon:19030;Parent=Msa1402610-mRNA-1 |
| tig0022882 | five_prime_UTR | 4041 | 4242 | 4041 | ID=Msa1402610-mRNA-1:five_prime_utr;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 4369 | 4491 | 4369 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 5993 | 6073 | 5993 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 6159 | 6247 | 6159 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 6339 | 6413 | 6339 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 7379 | 7440 | 7379 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 7532 | 7594 | 7532 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 7741 | 7917 | 7741 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | CDS | 8267 | 8334 | 8267 | ID=Msa1402610-mRNA-1:cds;Parent=Msa1402610-mRNA-1 |
| tig0022882 | three_prime_UTR | 8335 | 8648 | 8335 | ID=Msa1402610-mRNA-1:three_prime_utr;Parent=Msa1402610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
