Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436720 | XP_003602521.2 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 4.72e-171 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436720 | sp|Q99JH1|RP25L_MOUSE | 34.559 | 136 | 80 | 3 | 1 | 127 | 1 | 136 | 5.12e-17 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436720 | G7JAE0 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 2.25e-171 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003610 | Msa0436720 | 0.822003 | 2.988309e-53 | -8.615850e-47 |
| Msa0032780 | Msa0436720 | 0.814425 | 1.550896e-51 | -8.615850e-47 |
| Msa0140850 | Msa0436720 | 0.842577 | 2.375666e-58 | -8.615850e-47 |
| Msa0369450 | Msa0436720 | 0.814798 | 1.282465e-51 | -8.615850e-47 |
| Msa0425410 | Msa0436720 | 0.972201 | 2.215481e-134 | -8.615850e-47 |
| Msa0427150 | Msa0436720 | 0.892274 | 1.846352e-74 | -8.615850e-47 |
| Msa0436720 | Msa0698780 | 0.800912 | 1.153770e-48 | -8.615850e-47 |
| Msa0436720 | Msa1163530 | 0.803213 | 3.881518e-49 | -8.615850e-47 |
| Msa0436720 | Msa1165580 | 0.834877 | 2.324988e-56 | -8.615850e-47 |
| Msa0436720 | Msa1256840 | 0.817257 | 3.621042e-52 | -8.615850e-47 |
| Msa0436720 | Msa1357350 | 0.804533 | 2.063692e-49 | -8.615850e-47 |
| Msa0436720 | Msa1362210 | 0.848843 | 4.734040e-60 | -8.615850e-47 |
| Msa0436720 | Msa1374480 | 0.800072 | 1.711203e-48 | -8.615850e-47 |
| Msa0436720 | Msa1402610 | 0.853271 | 2.668231e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436720 | MtrunA17_Chr3g0129501 | 99.539 | 217 | 1 | 0 | 29 | 245 | 1 | 217 | 2.02e-153 | 425 |
| Msa0436720 | MtrunA17_Chr3g0129471 | 94.330 | 194 | 11 | 0 | 29 | 222 | 1 | 194 | 4.48e-93 | 272 |
| Msa0436720 | MtrunA17_Chr3g0129481 | 94.558 | 147 | 5 | 2 | 29 | 173 | 1 | 146 | 2.53e-81 | 242 |
| Msa0436720 | MtrunA17_Chr7g0237631 | 66.197 | 142 | 48 | 0 | 1 | 142 | 1 | 142 | 4.53e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436720 | AT1G76010.2 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 2.36e-73 | 227 |
| Msa0436720 | AT1G76010.1 | 77.027 | 148 | 33 | 1 | 1 | 147 | 1 | 148 | 2.36e-73 | 227 |
| Msa0436720 | AT1G20220.1 | 72.973 | 148 | 39 | 1 | 1 | 147 | 1 | 148 | 5.11e-70 | 218 |
| Msa0436720 | AT3G07030.2 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 5.45e-58 | 189 |
| Msa0436720 | AT3G07030.3 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 5.45e-58 | 189 |
| Msa0436720 | AT3G07030.4 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 6.59e-58 | 189 |
| Msa0436720 | AT3G07030.1 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.47e-57 | 188 |
| Msa0436720 | AT3G07030.5 | 65.185 | 135 | 47 | 0 | 1 | 135 | 1 | 135 | 1.81e-57 | 189 |
Find 122 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATCTCATTCTCGTTAAT+TGG | 0.167660 | 3_2:+90487960 | None:intergenic |
| CGTGGAAGGGGAAGGGGCCG+TGG | 0.286344 | 3_2:-90484086 | Msa0436720:CDS |
| GTTTGTGTTGTGGGTGGGTT+TGG | 0.292633 | 3_2:+90488148 | None:intergenic |
| AGGGGAAGGGGCCGTGGGCG+TGG | 0.303449 | 3_2:-90484080 | Msa0436720:CDS |
| CTGCATCAGAACACTCAAAT+TGG | 0.306654 | 3_2:-90486187 | Msa0436720:CDS |
| GTTAATTGGACTATCTGCTT+TGG | 0.315332 | 3_2:+90487974 | None:intergenic |
| TTTGGGCGAATACGGGGATA+TGG | 0.319104 | 3_2:+90488166 | None:intergenic |
| TGGGTGGGTTTGGGCGAATA+CGG | 0.323601 | 3_2:+90488158 | None:intergenic |
| CGTGGAAGGGGCAGGGGTAG+AGG | 0.333283 | 3_2:-90484794 | Msa0436720:CDS |
| TTAATTGGACTATCTGCTTT+GGG | 0.341721 | 3_2:+90487975 | None:intergenic |
| GCAGAGGGCGCGTCCGTGCA+TGG | 0.343284 | 3_2:-90484560 | Msa0436720:CDS |
| AGGGGAAGGGGTCGTGGAAG+GGG | 0.344420 | 3_2:-90484806 | Msa0436720:CDS |
| AGGGGTCGTGGAAGGGGCAG+GGG | 0.348078 | 3_2:-90484800 | Msa0436720:CDS |
| AGGGGCAGGGGTAGAGGTAG+AGG | 0.349329 | 3_2:-90484788 | Msa0436720:intron |
| CTTCCCCTTCCTCGCATCCT+TGG | 0.356404 | 3_2:+90484821 | None:intergenic |
| CGAGGTCGTGGAAGGGGAAG+GGG | 0.356867 | 3_2:-90484092 | Msa0436720:CDS |
| AATGGTGAAGCAGATGAAAA+AGG | 0.367578 | 3_2:+90488244 | None:intergenic |
| GGTGCAGCTGTCTGATCACC+TGG | 0.367998 | 3_2:-90484041 | Msa0436720:exon |
| CAGAGGGCGCGTCCGTGCAT+GGG | 0.370655 | 3_2:-90484559 | Msa0436720:CDS |
| TAAGTTAGGCAGGTTGAGTT+AGG | 0.375369 | 3_2:-90483846 | Msa0436720:three_prime_UTR |
| GGGTGGGTTTGGGCGAATAC+GGG | 0.391218 | 3_2:+90488159 | None:intergenic |
| GAAGGGGTCGTGGAAGGGGC+AGG | 0.393845 | 3_2:-90484802 | Msa0436720:CDS |
| TTTGTGTTGTGGGTGGGTTT+GGG | 0.397965 | 3_2:+90488149 | None:intergenic |
| GCTATGGTGCCCAGCCAGTT+GGG | 0.398432 | 3_2:-90484509 | Msa0436720:CDS |
| CCATAGTCATACTGCCCAAC+TGG | 0.407567 | 3_2:+90484495 | None:intergenic |
| GGCTATGGTGCCCAGCCAGT+TGG | 0.409114 | 3_2:-90484510 | Msa0436720:CDS |
| TCTTTATAGGAATGTACAAT+GGG | 0.414498 | 3_2:-90484629 | Msa0436720:intron |
| CGAGGAAGGGGAAGGGGTCG+TGG | 0.418781 | 3_2:-90484812 | Msa0436720:CDS |
| CGTGGACGGGGACGGGGCTA+TGG | 0.423409 | 3_2:-90484525 | Msa0436720:CDS |
| AATGATTACCGAGCTAATAA+AGG | 0.426094 | 3_2:-90486309 | Msa0436720:intron |
| TATGGTGATGGTTGGGATGG+TGG | 0.427513 | 3_2:-90484597 | Msa0436720:CDS |
| ATTATACCGCTTAACACATC+TGG | 0.428830 | 3_2:+90488305 | None:intergenic |
| TGGGATGGTGGACGTGGCTA+TGG | 0.430740 | 3_2:-90484585 | Msa0436720:CDS |
| CTTTGGGTTTCTCCACCCTC+TGG | 0.434627 | 3_2:+90487991 | None:intergenic |
| CGTGGGCGTGGTCGTGATGC+AGG | 0.434775 | 3_2:-90484068 | Msa0436720:CDS |
| CCAGTTGGGCAGTATGACTA+TGG | 0.448789 | 3_2:-90484495 | Msa0436720:CDS |
| GATGTGTTAAGCGGTATAAT+AGG | 0.449227 | 3_2:-90488302 | Msa0436720:five_prime_UTR |
| AGTCATACTGCCCAACTGGC+TGG | 0.453355 | 3_2:+90484499 | None:intergenic |
| ATAGATACCGTTTGTGTTGT+GGG | 0.454740 | 3_2:+90488139 | None:intergenic |
| AGGATGCGAGGAAGGGGAAG+GGG | 0.457113 | 3_2:-90484818 | Msa0436720:CDS |
| ACCTTCCCAATGGGCGTATG+TGG | 0.458011 | 3_2:+90488328 | None:intergenic |
| GGACGTGGCTATGGTGGCAG+AGG | 0.470972 | 3_2:-90484576 | Msa0436720:CDS |
| AAGGGGAAGGGGTCGTGGAA+GGG | 0.475093 | 3_2:-90484807 | Msa0436720:CDS |
| GGTGGGTTTGGGCGAATACG+GGG | 0.475203 | 3_2:+90488160 | None:intergenic |
| CCGAGGTCGTGGAAGGGGAA+GGG | 0.475726 | 3_2:-90484093 | Msa0436720:CDS |
| TTGTTTCAGAGAAGGATTGT+TGG | 0.483573 | 3_2:-90486211 | Msa0436720:intron |
| GAAGGGGAAGGGGTCGTGGA+AGG | 0.485703 | 3_2:-90484808 | Msa0436720:CDS |
| CACATCTGGACCTTCCCAAT+GGG | 0.486858 | 3_2:+90488319 | None:intergenic |
| TCGTCTTCATATTCATTCAA+AGG | 0.488564 | 3_2:+90484948 | None:intergenic |
| CAAGGATGCGAGGAAGGGGA+AGG | 0.491586 | 3_2:-90484820 | Msa0436720:CDS |
| GCCGAGGTCGTGGAAGGGGA+AGG | 0.493587 | 3_2:-90484094 | Msa0436720:CDS |
| CTGTCTGATCACCTGGGTGT+TGG | 0.500099 | 3_2:-90484034 | Msa0436720:exon |
| TATGGAATATGGTGATGGTT+GGG | 0.502393 | 3_2:-90484604 | Msa0436720:CDS |
| TTTACTTGATCAGCAGGAAG+AGG | 0.502624 | 3_2:+90484972 | None:intergenic |
| AAGGGGTCGTGGAAGGGGCA+GGG | 0.504582 | 3_2:-90484801 | Msa0436720:CDS |
| GCAGGCCGAGGTCGTGGAAG+GGG | 0.508952 | 3_2:-90484098 | Msa0436720:intron |
| GCTCACCAAGGATGCGAGGA+AGG | 0.509460 | 3_2:-90484826 | Msa0436720:CDS |
| TGATGTGCAGGCCGAGGTCG+TGG | 0.516693 | 3_2:-90484104 | Msa0436720:intron |
| GTTGGGCCACATACGCCCAT+TGG | 0.517441 | 3_2:-90488334 | None:intergenic |
| TTCTTTATAGGAATGTACAA+TGG | 0.517576 | 3_2:-90484630 | Msa0436720:intron |
| GAAATTGTTGTCAAAGCAAT+GGG | 0.517640 | 3_2:-90486353 | Msa0436720:CDS |
| CCCTTCCCCTTCCACGACCT+CGG | 0.520014 | 3_2:+90484093 | None:intergenic |
| GATGGTTGGGATGGTGGACG+TGG | 0.520396 | 3_2:-90484591 | Msa0436720:CDS |
| GTGCAGGCCGAGGTCGTGGA+AGG | 0.520404 | 3_2:-90484100 | Msa0436720:intron |
| GTTTCTCATCCTTCCTTGAG+TGG | 0.523264 | 3_2:+90487932 | None:intergenic |
| TACGTTGTCAAAGAAAGAGC+TGG | 0.523803 | 3_2:-90485986 | Msa0436720:CDS |
| AAGGATGCGAGGAAGGGGAA+GGG | 0.527077 | 3_2:-90484819 | Msa0436720:CDS |
| GTGGAAGGGGAAGGGGCCGT+GGG | 0.527889 | 3_2:-90484085 | Msa0436720:CDS |
| AAACCCACCCACAACACAAA+CGG | 0.530979 | 3_2:-90488146 | Msa0436720:intron |
| GTCATACTGCCCAACTGGCT+GGG | 0.531567 | 3_2:+90484500 | None:intergenic |
| TCTGTTGTTTATGAATAGAA+TGG | 0.532440 | 3_2:+90488226 | None:intergenic |
| GATAGATACCGTTTGTGTTG+TGG | 0.535421 | 3_2:+90488138 | None:intergenic |
| GTGTTCTTACCACGAGGTGC+AGG | 0.539055 | 3_2:+90484456 | None:intergenic |
| CGTGGTCGTGATGCAGGCCG+TGG | 0.544023 | 3_2:-90484062 | Msa0436720:CDS |
| TCACCAAGGATGCGAGGAAG+GGG | 0.548570 | 3_2:-90484824 | Msa0436720:CDS |
| GAGCTGGATACATCCTCCAC+AGG | 0.550506 | 3_2:-90485970 | Msa0436720:CDS |
| CTCACCAAGGATGCGAGGAA+GGG | 0.551388 | 3_2:-90484825 | Msa0436720:CDS |
| GAATATGGTGATGGTTGGGA+TGG | 0.556459 | 3_2:-90484600 | Msa0436720:CDS |
| GTATGGAATATGGTGATGGT+TGG | 0.556815 | 3_2:-90484605 | Msa0436720:CDS |
| GGCATCAGAGTAGGGTTATG+TGG | 0.556897 | 3_2:+90488265 | None:intergenic |
| ACACATCTGGACCTTCCCAA+TGG | 0.559822 | 3_2:+90488318 | None:intergenic |
| GATGGTGGACGTGGCTATGG+TGG | 0.564025 | 3_2:-90484582 | Msa0436720:CDS |
| GGAAGAAGGCCTTCTTCTAG+TGG | 0.564318 | 3_2:+90486136 | None:intergenic |
| GCCACATACGCCCATTGGGA+AGG | 0.565235 | 3_2:-90488329 | Msa0436720:five_prime_UTR |
| CAACTGATATAACTGACACA+TGG | 0.565866 | 3_2:-90486162 | Msa0436720:CDS |
| GACGTGGCTATGGTGGCAGA+GGG | 0.566506 | 3_2:-90484575 | Msa0436720:CDS |
| AACTACAAAAGCAAAACTGC+AGG | 0.567514 | 3_2:+90483900 | None:intergenic |
| CTGCATCACGACCACGCCCA+CGG | 0.570971 | 3_2:+90484069 | None:intergenic |
| ATACCGTTTGTGTTGTGGGT+GGG | 0.571178 | 3_2:+90488143 | None:intergenic |
| TGTATATGTTCAGTTAGAAG+AGG | 0.578134 | 3_2:-90484005 | Msa0436720:three_prime_UTR |
| AGAGGGCGCGTCCGTGCATG+GGG | 0.580204 | 3_2:-90484558 | Msa0436720:CDS |
| GTTACTAACTTGGAAAAGAG+TGG | 0.580916 | 3_2:+90487893 | None:intergenic |
| AGAGTAGGGTTATGTGGTCG+CGG | 0.583846 | 3_2:+90488271 | None:intergenic |
| TGCAGGCCGAGGTCGTGGAA+GGG | 0.584745 | 3_2:-90484099 | Msa0436720:intron |
| TGAAATTGTTGTCAAAGCAA+TGG | 0.584923 | 3_2:-90486354 | Msa0436720:CDS |
| AATGAATATGAAGACGAAGG+AGG | 0.585192 | 3_2:-90484942 | Msa0436720:intron |
| TCCTTCCTTGAGTGGTAATG+CGG | 0.591117 | 3_2:+90487940 | None:intergenic |
| ACTTGATCAGCAGGAAGAGG+AGG | 0.596674 | 3_2:+90484975 | None:intergenic |
| TTCTTACCACGAGGTGCAGG+TGG | 0.600530 | 3_2:+90484459 | None:intergenic |
| AACTGATATAACTGACACAT+GGG | 0.600887 | 3_2:-90486161 | Msa0436720:CDS |
| GTATATGTTCAGTTAGAAGA+GGG | 0.601399 | 3_2:-90484004 | Msa0436720:three_prime_UTR |
| GATACCGTTTGTGTTGTGGG+TGG | 0.602155 | 3_2:+90488142 | None:intergenic |
| GAGATCCGCATTACCACTCA+AGG | 0.607382 | 3_2:-90487945 | Msa0436720:CDS |
| ACATGGGAACCACTAGAAGA+AGG | 0.607454 | 3_2:-90486145 | Msa0436720:CDS |
| GATGGATAGGTACCAGAGGG+TGG | 0.622819 | 3_2:-90488003 | Msa0436720:CDS |
| TCCGCATTACCACTCAAGGA+AGG | 0.635560 | 3_2:-90487941 | Msa0436720:CDS |
| GAAGGCTCACCAAGGATGCG+AGG | 0.637231 | 3_2:-90484830 | Msa0436720:CDS |
| GTGCAGCTGTCTGATCACCT+GGG | 0.641232 | 3_2:-90484040 | Msa0436720:exon |
| TTGAATGAATATGAAGACGA+AGG | 0.641784 | 3_2:-90484945 | Msa0436720:CDS |
| TTTATAGGAATGTACAATGG+GGG | 0.652876 | 3_2:-90484627 | Msa0436720:intron |
| GAAAAGCATGACCCCATGCA+CGG | 0.654179 | 3_2:+90484547 | None:intergenic |
| TGAAAGTACATACCCTGTGG+AGG | 0.656547 | 3_2:+90485957 | None:intergenic |
| TTCAGATGGATAGGTACCAG+AGG | 0.660290 | 3_2:-90488007 | Msa0436720:intron |
| TCAGATGGATAGGTACCAGA+GGG | 0.661722 | 3_2:-90488006 | Msa0436720:intron |
| TTGAAACAGAAGGCTCACCA+AGG | 0.665147 | 3_2:-90484838 | Msa0436720:intron |
| AGCTGGATACATCCTCCACA+GGG | 0.668533 | 3_2:-90485969 | Msa0436720:intron |
| CTTTATAGGAATGTACAATG+GGG | 0.683519 | 3_2:-90484628 | Msa0436720:intron |
| GATGCACCACCTGCACCTCG+TGG | 0.692747 | 3_2:-90484465 | Msa0436720:intron |
| GTGATCAGACAGCTGCACCA+CGG | 0.695771 | 3_2:+90484045 | None:intergenic |
| GAAGGTCCAGATGTGTTAAG+CGG | 0.700508 | 3_2:-90488311 | Msa0436720:five_prime_UTR |
| ATACATGACAACCAACACCC+AGG | 0.707107 | 3_2:+90484023 | None:intergenic |
| TAACAAATAACTAAGCAGAG+AGG | 0.714531 | 3_2:+90483978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGAAAGAAATTTTTAAA+GGG | + | chr3_2:90484571-90484590 | None:intergenic | 10.0% |
| !!! | AAATTGAAAGAAATTTTTAA+AGG | + | chr3_2:90484572-90484591 | None:intergenic | 10.0% |
| !!! | TAAAAATTTCTTTCAATTTT+TGG | - | chr3_2:90484573-90484592 | Msa0436720:CDS | 10.0% |
| !!! | TATTAACTAATGATATTTTT+TGG | + | chr3_2:90484717-90484736 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTTATTCTTTGT+TGG | - | chr3_2:90486985-90487004 | Msa0436720:intron | 10.0% |
| !!! | GTTATTAAAACTTGAATTTT+TGG | + | chr3_2:90484486-90484505 | None:intergenic | 15.0% |
| !!! | TTTAACCCTTTAATTTTTAA+GGG | + | chr3_2:90484509-90484528 | None:intergenic | 15.0% |
| !!! | ATTTAACCCTTTAATTTTTA+AGG | + | chr3_2:90484510-90484529 | None:intergenic | 15.0% |
| !! | ATTGAAAACAAAAAGTTTAA+AGG | + | chr3_2:90484600-90484619 | None:intergenic | 15.0% |
| !! | AAAATTACTTTACTTGAATT+CGG | - | chr3_2:90487782-90487801 | Msa0436720:intron | 15.0% |
| !! | TATAAGACTTAAAAAATTCA+TGG | + | chr3_2:90488325-90488344 | None:intergenic | 15.0% |
| !! | GTATTAATTGAATGAATCTA+GGG | + | chr3_2:90483946-90483965 | None:intergenic | 20.0% |
| !! | AGTATTAATTGAATGAATCT+AGG | + | chr3_2:90483947-90483966 | None:intergenic | 20.0% |
| !! | TTAAGTTATTGTTACTAACT+TGG | + | chr3_2:90484147-90484166 | None:intergenic | 20.0% |
| !!! | AAAACTTGAATTTTTGGTTT+AGG | + | chr3_2:90484480-90484499 | None:intergenic | 20.0% |
| !! | AATAACCCCTTAAAAATTAA+AGG | - | chr3_2:90484500-90484519 | Msa0436720:CDS | 20.0% |
| !! | ATAACCCCTTAAAAATTAAA+GGG | - | chr3_2:90484501-90484520 | Msa0436720:CDS | 20.0% |
| !!! | TTAACCCTTTAATTTTTAAG+GGG | + | chr3_2:90484508-90484527 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACACTAAAGCA+GGG | + | chr3_2:90484629-90484648 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACACTAAAGC+AGG | + | chr3_2:90484630-90484649 | None:intergenic | 20.0% |
| !! | ATGTAACAAAAGAAGTTATT+TGG | + | chr3_2:90484681-90484700 | None:intergenic | 20.0% |
| !!! | TTTTATGACATATAACTGAT+AGG | + | chr3_2:90484854-90484873 | None:intergenic | 20.0% |
| !! | ATTGAAATCAGAAAATTTAG+AGG | - | chr3_2:90484912-90484931 | Msa0436720:intron | 20.0% |
| !! | ATTAAGTAAACATTAACCAA+CGG | + | chr3_2:90485530-90485549 | None:intergenic | 20.0% |
| !! | GCTAAATATATAGTTAAGAA+TGG | - | chr3_2:90486347-90486366 | Msa0436720:CDS | 20.0% |
| !!! | AATAATTTTTATCTTGCTAC+AGG | - | chr3_2:90486383-90486402 | Msa0436720:intron | 20.0% |
| !! | TTCGATATTAAAAAGACAAA+GGG | + | chr3_2:90486590-90486609 | None:intergenic | 20.0% |
| !!! | GTTTATGTATTTTAGAAACA+AGG | - | chr3_2:90486619-90486638 | Msa0436720:intron | 20.0% |
| !! | TAAAGATAAAATAAGTACAG+AGG | + | chr3_2:90486799-90486818 | None:intergenic | 20.0% |
| !!! | CTGTACTTATTTTATCTTTA+TGG | - | chr3_2:90486799-90486818 | Msa0436720:intron | 20.0% |
| !!! | TCTGTTTTCTGTAATTATTA+AGG | - | chr3_2:90486893-90486912 | Msa0436720:intron | 20.0% |
| !!! | AACTATAATTTTGAAACAGA+AGG | - | chr3_2:90487179-90487198 | Msa0436720:intron | 20.0% |
| !! | AAAATAAGAAGATAACACAA+GGG | + | chr3_2:90487843-90487862 | None:intergenic | 20.0% |
| !!! | TCTATCTATACTTTTAAGTT+AGG | - | chr3_2:90488167-90488186 | Msa0436720:five_prime_UTR | 20.0% |
| !! | TCTGTTGTTTATGAATAGAA+TGG | + | chr3_2:90483804-90483823 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGTCAATTCAGA+TGG | - | chr3_2:90484006-90484025 | Msa0436720:three_prime_UTR | 25.0% |
| ! | AAAGCATATAGAACAAAATG+TGG | + | chr3_2:90484388-90484407 | None:intergenic | 25.0% |
| !! | AAAAAGGTATAAAGGATACA+AGG | + | chr3_2:90484457-90484476 | None:intergenic | 25.0% |
| !!! | GAATTTTTGGTTTAGGAAAA+AGG | + | chr3_2:90484473-90484492 | None:intergenic | 25.0% |
| ! | GTAAAGGTGATATATTTAGA+GGG | + | chr3_2:90484540-90484559 | None:intergenic | 25.0% |
| !! | ACAAAAATTCCTTCGATTTT+TGG | + | chr3_2:90484939-90484958 | None:intergenic | 25.0% |
| !! | AAAATCGAAGGAATTTTTGT+AGG | - | chr3_2:90484939-90484958 | Msa0436720:intron | 25.0% |
| !! | AAATCGAAGGAATTTTTGTA+GGG | - | chr3_2:90484940-90484959 | Msa0436720:intron | 25.0% |
| !!! | CTTAAAGTTGGTATATTTAG+AGG | - | chr3_2:90484970-90484989 | Msa0436720:CDS | 25.0% |
| !!! | TGGTTTTATATAAATGTGAC+CGG | + | chr3_2:90485105-90485124 | None:intergenic | 25.0% |
| ! | AAATACAATAAACCTAGACA+AGG | - | chr3_2:90485150-90485169 | Msa0436720:intron | 25.0% |
| ! | AATACAATAAACCTAGACAA+GGG | - | chr3_2:90485151-90485170 | Msa0436720:intron | 25.0% |
| !! | TTCTGTTTTCTATTGTATCT+TGG | + | chr3_2:90485292-90485311 | None:intergenic | 25.0% |
| ! | AGTGAAAATAAGAAAGTGAT+GGG | + | chr3_2:90485474-90485493 | None:intergenic | 25.0% |
| ! | AAGTGAAAATAAGAAAGTGA+TGG | + | chr3_2:90485475-90485494 | None:intergenic | 25.0% |
| ! | AAAATAACTAAGCCTATCAA+GGG | + | chr3_2:90486151-90486170 | None:intergenic | 25.0% |
| ! | AAAAATAACTAAGCCTATCA+AGG | + | chr3_2:90486152-90486171 | None:intergenic | 25.0% |
| ! | CAAATCTTACAGAATTACAA+CGG | + | chr3_2:90486312-90486331 | None:intergenic | 25.0% |
| ! | GTTGTAATTCTGTAAGATTT+GGG | - | chr3_2:90486311-90486330 | Msa0436720:CDS | 25.0% |
| ! | TTGTAATTCTGTAAGATTTG+GGG | - | chr3_2:90486312-90486331 | Msa0436720:CDS | 25.0% |
| !!! | TTTTAAAAGCTCAGAAATTG+TGG | + | chr3_2:90486487-90486506 | None:intergenic | 25.0% |
| ! | TCGATATTAAAAAGACAAAG+GGG | + | chr3_2:90486589-90486608 | None:intergenic | 25.0% |
| ! | GTTCGATATTAAAAAGACAA+AGG | + | chr3_2:90486591-90486610 | None:intergenic | 25.0% |
| ! | TTACTTGAATGTGTTATCTT+TGG | - | chr3_2:90486667-90486686 | Msa0436720:intron | 25.0% |
| !! | TTTGATTGCTATTAATGCAT+TGG | - | chr3_2:90486852-90486871 | Msa0436720:intron | 25.0% |
| ! | TTTGCTTACTTAACTGTAAT+CGG | - | chr3_2:90487280-90487299 | Msa0436720:intron | 25.0% |
| ! | CTACACAATCTATTCTTTAT+AGG | - | chr3_2:90487385-90487404 | Msa0436720:intron | 25.0% |
| ! | TTCTTTATAGGAATGTACAA+TGG | - | chr3_2:90487397-90487416 | Msa0436720:intron | 25.0% |
| ! | TCTTTATAGGAATGTACAAT+GGG | - | chr3_2:90487398-90487417 | Msa0436720:intron | 25.0% |
| !! | TATCTTGAAACCTGAATTTT+GGG | + | chr3_2:90487602-90487621 | None:intergenic | 25.0% |
| !! | ATATCTTGAAACCTGAATTT+TGG | + | chr3_2:90487603-90487622 | None:intergenic | 25.0% |
| ! | CAAAATAAGAAGATAACACA+AGG | + | chr3_2:90487844-90487863 | None:intergenic | 25.0% |
| !!! | CTTGTGTTATCTTCTTATTT+TGG | - | chr3_2:90487842-90487861 | Msa0436720:intron | 25.0% |
| !!! | TGTTAGATTTGCTTTTAGTT+TGG | - | chr3_2:90488067-90488086 | Msa0436720:intron | 25.0% |
| ! | TTTTGTCAATTCAGATGGAT+AGG | - | chr3_2:90484011-90484030 | Msa0436720:three_prime_UTR | 30.0% |
| TTAATTGGACTATCTGCTTT+GGG | + | chr3_2:90484055-90484074 | None:intergenic | 30.0% | |
| ATTCAATGTCAATACATGCA+TGG | - | chr3_2:90484228-90484247 | Msa0436720:intron | 30.0% | |
| TTCAATGTCAATACATGCAT+GGG | - | chr3_2:90484229-90484248 | Msa0436720:intron | 30.0% | |
| !! | AAGAAGTGTATGTGTTTTAG+AGG | - | chr3_2:90484266-90484285 | Msa0436720:intron | 30.0% |
| CTGAAAACACAAATTTCACT+TGG | + | chr3_2:90484351-90484370 | None:intergenic | 30.0% | |
| ! | GGTTTAGGAAAAAGGTATAA+AGG | + | chr3_2:90484465-90484484 | None:intergenic | 30.0% |
| CGTAAAGGTGATATATTTAG+AGG | + | chr3_2:90484541-90484560 | None:intergenic | 30.0% | |
| TTAAAGGGACTAAAACGTAA+AGG | + | chr3_2:90484556-90484575 | None:intergenic | 30.0% | |
| ATAGGACGTTAAAATAGCAT+TGG | + | chr3_2:90484836-90484855 | None:intergenic | 30.0% | |
| TGTCATAAAAAAATGTCGCT+TGG | - | chr3_2:90484864-90484883 | Msa0436720:intron | 30.0% | |
| TAGGGACTAAAACTTAAAGT+TGG | - | chr3_2:90484958-90484977 | Msa0436720:CDS | 30.0% | |
| GATGCTATGTTTCAATCATT+TGG | + | chr3_2:90485125-90485144 | None:intergenic | 30.0% | |
| ATGATTGAAACATAGCATCA+TGG | - | chr3_2:90485126-90485145 | Msa0436720:intron | 30.0% | |
| ACAATAGAAAACAGAAGTGA+TGG | - | chr3_2:90485296-90485315 | Msa0436720:intron | 30.0% | |
| !!! | TGTCTAATATGCCATTTTTG+TGG | + | chr3_2:90485408-90485427 | None:intergenic | 30.0% |
| TGAAAATAAGAAAGTGATGG+GGG | + | chr3_2:90485472-90485491 | None:intergenic | 30.0% | |
| GTGAAAATAAGAAAGTGATG+GGG | + | chr3_2:90485473-90485492 | None:intergenic | 30.0% | |
| TGAAATTGTTGTCAAAGCAA+TGG | - | chr3_2:90485673-90485692 | Msa0436720:intron | 30.0% | |
| GAAATTGTTGTCAAAGCAAT+GGG | - | chr3_2:90485674-90485693 | Msa0436720:intron | 30.0% | |
| AATGATTACCGAGCTAATAA+AGG | - | chr3_2:90485718-90485737 | Msa0436720:intron | 30.0% | |
| AACTGATATAACTGACACAT+GGG | - | chr3_2:90485866-90485885 | Msa0436720:intron | 30.0% | |
| TCAAATGATTTATGTGTGCA+TGG | - | chr3_2:90485946-90485965 | Msa0436720:intron | 30.0% | |
| CAAATGATTTATGTGTGCAT+GGG | - | chr3_2:90485947-90485966 | Msa0436720:intron | 30.0% | |
| CGTTGTAATTCTGTAAGATT+TGG | - | chr3_2:90486310-90486329 | Msa0436720:CDS | 30.0% | |
| TGTTGAATCAGAATTGAGAA+AGG | - | chr3_2:90486444-90486463 | Msa0436720:intron | 30.0% | |
| ATTGTGGTTCAATAAAACCT+TGG | + | chr3_2:90486471-90486490 | None:intergenic | 30.0% | |
| CATACTTGTAAATCATGACT+GGG | + | chr3_2:90486919-90486938 | None:intergenic | 30.0% | |
| TCGTCTTCATATTCATTCAA+AGG | + | chr3_2:90487082-90487101 | None:intergenic | 30.0% | |
| TTGAATGAATATGAAGACGA+AGG | - | chr3_2:90487082-90487101 | Msa0436720:intron | 30.0% | |
| CTTTATAGGAATGTACAATG+GGG | - | chr3_2:90487399-90487418 | Msa0436720:intron | 30.0% | |
| TTTATAGGAATGTACAATGG+GGG | - | chr3_2:90487400-90487419 | Msa0436720:intron | 30.0% | |
| ! | ATCTTGAAACCTGAATTTTG+GGG | + | chr3_2:90487601-90487620 | None:intergenic | 30.0% |
| TCTTATGTAGCCTGATTTAA+TGG | + | chr3_2:90487763-90487782 | None:intergenic | 30.0% | |
| AAGGAAATTAACATACGACA+AGG | + | chr3_2:90487818-90487837 | None:intergenic | 30.0% | |
| TTGTCGTATGTTAATTTCCT+TGG | - | chr3_2:90487817-90487836 | Msa0436720:intron | 30.0% | |
| GTCGTTCTATACATTACTTA+AGG | - | chr3_2:90487877-90487896 | Msa0436720:intron | 30.0% | |
| TGTATATGTTCAGTTAGAAG+AGG | - | chr3_2:90488022-90488041 | Msa0436720:intron | 30.0% | |
| GTATATGTTCAGTTAGAAGA+GGG | - | chr3_2:90488023-90488042 | Msa0436720:intron | 30.0% | |
| TAACAAATAACTAAGCAGAG+AGG | + | chr3_2:90488052-90488071 | None:intergenic | 30.0% | |
| !!! | TCTATACTTTTAAGTTAGGC+AGG | - | chr3_2:90488171-90488190 | Msa0436720:five_prime_UTR | 30.0% |
| ATTATACCGCTTAACACATC+TGG | + | chr3_2:90483725-90483744 | None:intergenic | 35.0% | |
| GATGTGTTAAGCGGTATAAT+AGG | - | chr3_2:90483725-90483744 | Msa0436720:three_prime_UTR | 35.0% | |
| !! | ATGAAAAAGGCATCAGAGTA+GGG | + | chr3_2:90483773-90483792 | None:intergenic | 35.0% |
| AATGGTGAAGCAGATGAAAA+AGG | + | chr3_2:90483786-90483805 | None:intergenic | 35.0% | |
| ATAGATACCGTTTGTGTTGT+GGG | + | chr3_2:90483891-90483910 | None:intergenic | 35.0% | |
| GTTAATTGGACTATCTGCTT+TGG | + | chr3_2:90484056-90484075 | None:intergenic | 35.0% | |
| GTTACTAACTTGGAAAAGAG+TGG | + | chr3_2:90484137-90484156 | None:intergenic | 35.0% | |
| AACCAAAGAACAAGCAAATC+AGG | + | chr3_2:90484304-90484323 | None:intergenic | 35.0% | |
| GTTCTTTGGTTGAAATAGCT+TGG | - | chr3_2:90484313-90484332 | Msa0436720:intron | 35.0% | |
| TTGGTTGAAATAGCTTGGAT+TGG | - | chr3_2:90484318-90484337 | Msa0436720:intron | 35.0% | |
| GGAACATGAAACGTAAACAT+TGG | + | chr3_2:90484660-90484679 | None:intergenic | 35.0% | |
| TTTAGAGGACCAAAAATCGA+AGG | - | chr3_2:90484927-90484946 | Msa0436720:intron | 35.0% | |
| ATTTCTATTCACCCTTGTCT+AGG | + | chr3_2:90485165-90485184 | None:intergenic | 35.0% | |
| ACAATATCATGTAAAGAGCC+TGG | - | chr3_2:90485185-90485204 | Msa0436720:intron | 35.0% | |
| ! | ATTGTTACTCTCCTTTTACC+AGG | + | chr3_2:90485206-90485225 | None:intergenic | 35.0% |
| !! | CTGACAGTCTATTTCTATCT+TGG | + | chr3_2:90485345-90485364 | None:intergenic | 35.0% |
| ! | CATTTTTGTGGAGTTGACTA+AGG | + | chr3_2:90485396-90485415 | None:intergenic | 35.0% |
| CTTAGTCAACTCCACAAAAA+TGG | - | chr3_2:90485394-90485413 | Msa0436720:intron | 35.0% | |
| ! | GTATATTTTCGTTCTTCCGT+TGG | - | chr3_2:90485511-90485530 | Msa0436720:intron | 35.0% |
| ! | TCAACATGTGTGTTTTCTGT+AGG | - | chr3_2:90485637-90485656 | Msa0436720:intron | 35.0% |
| ATTACCGAGCTAATAAAGGT+GGG | - | chr3_2:90485722-90485741 | Msa0436720:intron | 35.0% | |
| GATATCTCTATCCAGTGAAT+TGG | - | chr3_2:90485750-90485769 | Msa0436720:intron | 35.0% | |
| AAAAATGCCAACCAATTCAC+TGG | + | chr3_2:90485764-90485783 | None:intergenic | 35.0% | |
| CTTTCTACTTGTTTCAGAGA+AGG | - | chr3_2:90485808-90485827 | Msa0436720:intron | 35.0% | |
| TTGTTTCAGAGAAGGATTGT+TGG | - | chr3_2:90485816-90485835 | Msa0436720:intron | 35.0% | |
| CAACTGATATAACTGACACA+TGG | - | chr3_2:90485865-90485884 | Msa0436720:intron | 35.0% | |
| AGAGGAAACAAAAAGCCATA+CGG | + | chr3_2:90485915-90485934 | None:intergenic | 35.0% | |
| CATTTGACAAGATAGCATAG+AGG | + | chr3_2:90485933-90485952 | None:intergenic | 35.0% | |
| ! | TGTGTTTTACTTGCTCAGTT+TGG | - | chr3_2:90485987-90486006 | Msa0436720:CDS | 35.0% |
| TGTTCACAAAACAAAGAGAC+GGG | + | chr3_2:90486566-90486585 | None:intergenic | 35.0% | |
| GTGTTCACAAAACAAAGAGA+CGG | + | chr3_2:90486567-90486586 | None:intergenic | 35.0% | |
| GCAATCAAAAGCGAAACTAA+AGG | + | chr3_2:90486841-90486860 | None:intergenic | 35.0% | |
| CCATACTTGTAAATCATGAC+TGG | + | chr3_2:90486920-90486939 | None:intergenic | 35.0% | |
| CCAGTCATGATTTACAAGTA+TGG | - | chr3_2:90486917-90486936 | Msa0436720:intron | 35.0% | |
| ! | AAAGGTTTTACTTGATCAGC+AGG | + | chr3_2:90487064-90487083 | None:intergenic | 35.0% |
| AATGAATATGAAGACGAAGG+AGG | - | chr3_2:90487085-90487104 | Msa0436720:intron | 35.0% | |
| !! | TATGGAATATGGTGATGGTT+GGG | - | chr3_2:90487423-90487442 | Msa0436720:intron | 35.0% |
| GATTAATACCAGTTATGTGC+TGG | - | chr3_2:90487671-90487690 | Msa0436720:intron | 35.0% | |
| CATGATGCTTCCATTAAATC+AGG | - | chr3_2:90487750-90487769 | Msa0436720:intron | 35.0% | |
| !! | ATTTCTGTTTGATGATGTGC+AGG | - | chr3_2:90487911-90487930 | Msa0436720:CDS | 35.0% |
| AACTACAAAAGCAAAACTGC+AGG | + | chr3_2:90488130-90488149 | None:intergenic | 35.0% | |
| !! | GATGAAAAAGGCATCAGAGT+AGG | + | chr3_2:90483774-90483793 | None:intergenic | 40.0% |
| GATAGATACCGTTTGTGTTG+TGG | + | chr3_2:90483892-90483911 | None:intergenic | 40.0% | |
| CGGATCTCATTCTCGTTAAT+TGG | + | chr3_2:90484070-90484089 | None:intergenic | 40.0% | |
| !! | TGCCTGATTTGCTTGTTCTT+TGG | - | chr3_2:90484299-90484318 | Msa0436720:intron | 40.0% |
| AGTGTACTGTCTAGAAAGAC+CGG | - | chr3_2:90485083-90485102 | Msa0436720:intron | 40.0% | |
| CATGTAAAGAGCCTGGTAAA+AGG | - | chr3_2:90485192-90485211 | Msa0436720:intron | 40.0% | |
| ! | AAATAGACTGTCAGAGCATC+TGG | - | chr3_2:90485351-90485370 | Msa0436720:intron | 40.0% |
| ! | CTGGTACCATCTTAGGTTTT+AGG | - | chr3_2:90485370-90485389 | Msa0436720:intron | 40.0% |
| CTAAGGCCTAAAACCTAAGA+TGG | + | chr3_2:90485379-90485398 | None:intergenic | 40.0% | |
| ACACTATCTTCAGTCGTTGT+GGG | - | chr3_2:90485425-90485444 | Msa0436720:intron | 40.0% | |
| ! | AAATAAGAAAGTGATGGGGG+AGG | + | chr3_2:90485469-90485488 | None:intergenic | 40.0% |
| ! | GTGTGTTTTCTGTAGGAGAA+AGG | - | chr3_2:90485644-90485663 | Msa0436720:intron | 40.0% |
| GATTACCGAGCTAATAAAGG+TGG | - | chr3_2:90485721-90485740 | Msa0436720:intron | 40.0% | |
| TTACCGAGCTAATAAAGGTG+GGG | - | chr3_2:90485723-90485742 | Msa0436720:intron | 40.0% | |
| TCTCTATCCAGTGAATTGGT+TGG | - | chr3_2:90485754-90485773 | Msa0436720:intron | 40.0% | |
| CTGCATCAGAACACTCAAAT+TGG | - | chr3_2:90485840-90485859 | Msa0436720:intron | 40.0% | |
| ACAAAAAGCCATACGGAAGA+AGG | + | chr3_2:90485908-90485927 | None:intergenic | 40.0% | |
| TACGTTGTCAAAGAAAGAGC+TGG | - | chr3_2:90486041-90486060 | Msa0436720:intron | 40.0% | |
| ! | TCATGAAAGTACATACCCTG+TGG | + | chr3_2:90486076-90486095 | None:intergenic | 40.0% |
| TAGATGCCTTATCCCTTGAT+AGG | - | chr3_2:90486136-90486155 | Msa0436720:CDS | 40.0% | |
| ACTAAGCCTATCAAGGGATA+AGG | + | chr3_2:90486145-90486164 | None:intergenic | 40.0% | |
| CTTACAGAATTACAACGGCT+AGG | + | chr3_2:90486307-90486326 | None:intergenic | 40.0% | |
| ! | TTCTGTAAGATTTGGGGTCA+CGG | - | chr3_2:90486318-90486337 | Msa0436720:CDS | 40.0% |
| TCAGAATTGAGAAAGGACCA+AGG | - | chr3_2:90486451-90486470 | Msa0436720:intron | 40.0% | |
| ! | ACCTTTGACTTCAAACAGAG+CGG | - | chr3_2:90486753-90486772 | Msa0436720:intron | 40.0% |
| GATATCTGCATGAGGAAATC+AGG | + | chr3_2:90487030-90487049 | None:intergenic | 40.0% | |
| TTTACTTGATCAGCAGGAAG+AGG | + | chr3_2:90487058-90487077 | None:intergenic | 40.0% | |
| ! | TACAATGGGGGTATGGAATA+TGG | - | chr3_2:90487412-90487431 | Msa0436720:intron | 40.0% |
| !! | GTATGGAATATGGTGATGGT+TGG | - | chr3_2:90487422-90487441 | Msa0436720:intron | 40.0% |
| ! | TAAGTTAGGCAGGTTGAGTT+AGG | - | chr3_2:90488181-90488200 | Msa0436720:five_prime_UTR | 40.0% |
| GAAGGTCCAGATGTGTTAAG+CGG | - | chr3_2:90483716-90483735 | Msa0436720:three_prime_UTR | 45.0% | |
| ! | TTTGTGTTGTGGGTGGGTTT+GGG | + | chr3_2:90483881-90483900 | None:intergenic | 45.0% |
| AAACCCACCCACAACACAAA+CGG | - | chr3_2:90483881-90483900 | Msa0436720:three_prime_UTR | 45.0% | |
| ATACCGTTTGTGTTGTGGGT+GGG | + | chr3_2:90483887-90483906 | None:intergenic | 45.0% | |
| TTCAGATGGATAGGTACCAG+AGG | - | chr3_2:90484020-90484039 | Msa0436720:three_prime_UTR | 45.0% | |
| TCAGATGGATAGGTACCAGA+GGG | - | chr3_2:90484021-90484040 | Msa0436720:three_prime_UTR | 45.0% | |
| ! | TCCTTCCTTGAGTGGTAATG+CGG | + | chr3_2:90484090-90484109 | None:intergenic | 45.0% |
| GTTTCTCATCCTTCCTTGAG+TGG | + | chr3_2:90484098-90484117 | None:intergenic | 45.0% | |
| ! | AGAGCATCTGGTACCATCTT+AGG | - | chr3_2:90485363-90485382 | Msa0436720:intron | 45.0% |
| GACACTATCTTCAGTCGTTG+TGG | - | chr3_2:90485424-90485443 | Msa0436720:intron | 45.0% | |
| ! | AAGTGATGGGGGAGGATATT+GGG | + | chr3_2:90485461-90485480 | None:intergenic | 45.0% |
| ! | AAAGTGATGGGGGAGGATAT+TGG | + | chr3_2:90485462-90485481 | None:intergenic | 45.0% |
| TACCGAGCTAATAAAGGTGG+GGG | - | chr3_2:90485724-90485743 | Msa0436720:intron | 45.0% | |
| ACATGGGAACCACTAGAAGA+AGG | - | chr3_2:90485882-90485901 | Msa0436720:intron | 45.0% | |
| ! | GTGCATGGGTGTGATTGTTT+TGG | - | chr3_2:90485961-90485980 | Msa0436720:intron | 45.0% |
| ! | TGAAAGTACATACCCTGTGG+AGG | + | chr3_2:90486073-90486092 | None:intergenic | 45.0% |
| ACAAAACAAAGAGACGGGTG+AGG | + | chr3_2:90486561-90486580 | None:intergenic | 45.0% | |
| ! | ACCGCTCTGTTTGAAGTCAA+AGG | + | chr3_2:90486757-90486776 | None:intergenic | 45.0% |
| !! | AGGAGGTTGATATCTGCATG+AGG | + | chr3_2:90487038-90487057 | None:intergenic | 45.0% |
| TTGAAACAGAAGGCTCACCA+AGG | - | chr3_2:90487189-90487208 | Msa0436720:intron | 45.0% | |
| AGGAATGTACAATGGGGGTA+TGG | - | chr3_2:90487405-90487424 | Msa0436720:intron | 45.0% | |
| !! | GAATATGGTGATGGTTGGGA+TGG | - | chr3_2:90487427-90487446 | Msa0436720:intron | 45.0% |
| AACACTTGGCCCCAAAATTC+AGG | - | chr3_2:90487589-90487608 | Msa0436720:intron | 45.0% | |
| AGAAGATAACACAAGGGCCA+AGG | + | chr3_2:90487837-90487856 | None:intergenic | 45.0% | |
| ATACATGACAACCAACACCC+AGG | + | chr3_2:90488007-90488026 | None:intergenic | 45.0% | |
| CACATCTGGACCTTCCCAAT+GGG | + | chr3_2:90483711-90483730 | None:intergenic | 50.0% | |
| ACACATCTGGACCTTCCCAA+TGG | + | chr3_2:90483712-90483731 | None:intergenic | 50.0% | |
| AGAGTAGGGTTATGTGGTCG+CGG | + | chr3_2:90483759-90483778 | None:intergenic | 50.0% | |
| GGCATCAGAGTAGGGTTATG+TGG | + | chr3_2:90483765-90483784 | None:intergenic | 50.0% | |
| TTTGGGCGAATACGGGGATA+TGG | + | chr3_2:90483864-90483883 | None:intergenic | 50.0% | |
| ! | GTTTGTGTTGTGGGTGGGTT+TGG | + | chr3_2:90483882-90483901 | None:intergenic | 50.0% |
| GATACCGTTTGTGTTGTGGG+TGG | + | chr3_2:90483888-90483907 | None:intergenic | 50.0% | |
| GAGATCCGCATTACCACTCA+AGG | - | chr3_2:90484082-90484101 | Msa0436720:CDS | 50.0% | |
| TCCGCATTACCACTCAAGGA+AGG | - | chr3_2:90484086-90484105 | Msa0436720:CDS | 50.0% | |
| ! | TACATGCATGGGTGTCGTGT+TGG | - | chr3_2:90484240-90484259 | Msa0436720:intron | 50.0% |
| TCTTCAGTCGTTGTGGGACT+TGG | - | chr3_2:90485431-90485450 | Msa0436720:intron | 50.0% | |
| ACCGAGCTAATAAAGGTGGG+GGG | - | chr3_2:90485725-90485744 | Msa0436720:intron | 50.0% | |
| ACCCCCCACCTTTATTAGCT+CGG | + | chr3_2:90485729-90485748 | None:intergenic | 50.0% | |
| GGAAGAAGGCCTTCTTCTAG+TGG | + | chr3_2:90485894-90485913 | None:intergenic | 50.0% | |
| GAAGAAGGCCTTCTTCCGTA+TGG | - | chr3_2:90485897-90485916 | Msa0436720:intron | 50.0% | |
| AGCTGGATACATCCTCCACA+GGG | - | chr3_2:90486058-90486077 | Msa0436720:intron | 50.0% | |
| AACAAAGAGACGGGTGAGGT+GGG | + | chr3_2:90486557-90486576 | None:intergenic | 50.0% | |
| AAACAAAGAGACGGGTGAGG+TGG | + | chr3_2:90486558-90486577 | None:intergenic | 50.0% | |
| ACTTGATCAGCAGGAAGAGG+AGG | + | chr3_2:90487055-90487074 | None:intergenic | 50.0% | |
| ! | GGGGGTATGGAATATGGTGA+TGG | - | chr3_2:90487418-90487437 | Msa0436720:intron | 50.0% |
| !! | TATGGTGATGGTTGGGATGG+TGG | - | chr3_2:90487430-90487449 | Msa0436720:intron | 50.0% |
| ! | GAAAAGCATGACCCCATGCA+CGG | + | chr3_2:90487483-90487502 | None:intergenic | 50.0% |
| CCATAGTCATACTGCCCAAC+TGG | + | chr3_2:90487535-90487554 | None:intergenic | 50.0% | |
| CCAGTTGGGCAGTATGACTA+TGG | - | chr3_2:90487532-90487551 | Msa0436720:intron | 50.0% | |
| CACCTCGTGGTAAGAACACT+TGG | - | chr3_2:90487575-90487594 | Msa0436720:intron | 50.0% | |
| TCGCTATGCCAGCACATAAC+TGG | + | chr3_2:90487682-90487701 | None:intergenic | 50.0% | |
| ! | TGGGTGGGTTTGGGCGAATA+CGG | + | chr3_2:90483872-90483891 | None:intergenic | 55.0% |
| GATGGATAGGTACCAGAGGG+TGG | - | chr3_2:90484024-90484043 | Msa0436720:three_prime_UTR | 55.0% | |
| ! | CTTTGGGTTTCTCCACCCTC+TGG | + | chr3_2:90484039-90484058 | None:intergenic | 55.0% |
| GAGCTGGATACATCCTCCAC+AGG | - | chr3_2:90486057-90486076 | Msa0436720:intron | 55.0% | |
| GGTGAGGTGGGGGATAGATA+AGG | + | chr3_2:90486545-90486564 | None:intergenic | 55.0% | |
| ACAAAGAGACGGGTGAGGTG+GGG | + | chr3_2:90486556-90486575 | None:intergenic | 55.0% | |
| CTCACCAAGGATGCGAGGAA+GGG | - | chr3_2:90487202-90487221 | Msa0436720:intron | 55.0% | |
| TCACCAAGGATGCGAGGAAG+GGG | - | chr3_2:90487203-90487222 | Msa0436720:intron | 55.0% | |
| AAGGATGCGAGGAAGGGGAA+GGG | - | chr3_2:90487208-90487227 | Msa0436720:intron | 55.0% | |
| ! | GCATGGGGTCATGCTTTTCG+TGG | - | chr3_2:90487484-90487503 | Msa0436720:intron | 55.0% |
| ! | GGGGTCATGCTTTTCGTGGA+CGG | - | chr3_2:90487488-90487507 | Msa0436720:intron | 55.0% |
| ! | GGGTCATGCTTTTCGTGGAC+GGG | - | chr3_2:90487489-90487508 | Msa0436720:intron | 55.0% |
| ! | GGTCATGCTTTTCGTGGACG+GGG | - | chr3_2:90487490-90487509 | Msa0436720:intron | 55.0% |
| ! | ATGCTTTTCGTGGACGGGGA+CGG | - | chr3_2:90487494-90487513 | Msa0436720:intron | 55.0% |
| GTCATACTGCCCAACTGGCT+GGG | + | chr3_2:90487530-90487549 | None:intergenic | 55.0% | |
| AGTCATACTGCCCAACTGGC+TGG | + | chr3_2:90487531-90487550 | None:intergenic | 55.0% | |
| TTCTTACCACGAGGTGCAGG+TGG | + | chr3_2:90487571-90487590 | None:intergenic | 55.0% | |
| GTGTTCTTACCACGAGGTGC+AGG | + | chr3_2:90487574-90487593 | None:intergenic | 55.0% | |
| GGCCAAGTGTTCTTACCACG+AGG | + | chr3_2:90487580-90487599 | None:intergenic | 55.0% | |
| !! | GTTTGATGATGTGCAGGCCG+AGG | - | chr3_2:90487917-90487936 | Msa0436720:CDS | 55.0% |
| GTGATCAGACAGCTGCACCA+CGG | + | chr3_2:90487985-90488004 | None:intergenic | 55.0% | |
| GTGCAGCTGTCTGATCACCT+GGG | - | chr3_2:90487987-90488006 | Msa0436720:CDS | 55.0% | |
| CTGTCTGATCACCTGGGTGT+TGG | - | chr3_2:90487993-90488012 | Msa0436720:CDS | 55.0% | |
| ! | GGTGGGTTTGGGCGAATACG+GGG | + | chr3_2:90483870-90483889 | None:intergenic | 60.0% |
| ! | GGGTGGGTTTGGGCGAATAC+GGG | + | chr3_2:90483871-90483890 | None:intergenic | 60.0% |
| CAAAGAGACGGGTGAGGTGG+GGG | + | chr3_2:90486555-90486574 | None:intergenic | 60.0% | |
| GAAGGCTCACCAAGGATGCG+AGG | - | chr3_2:90487197-90487216 | Msa0436720:intron | 60.0% | |
| GCTCACCAAGGATGCGAGGA+AGG | - | chr3_2:90487201-90487220 | Msa0436720:intron | 60.0% | |
| CTTCCCCTTCCTCGCATCCT+TGG | + | chr3_2:90487209-90487228 | None:intergenic | 60.0% | |
| CAAGGATGCGAGGAAGGGGA+AGG | - | chr3_2:90487207-90487226 | Msa0436720:intron | 60.0% | |
| AGGATGCGAGGAAGGGGAAG+GGG | - | chr3_2:90487209-90487228 | Msa0436720:intron | 60.0% | |
| AAGGGGAAGGGGTCGTGGAA+GGG | - | chr3_2:90487220-90487239 | Msa0436720:intron | 60.0% | |
| !! | GATGGTTGGGATGGTGGACG+TGG | - | chr3_2:90487436-90487455 | Msa0436720:intron | 60.0% |
| !! | TGGGATGGTGGACGTGGCTA+TGG | - | chr3_2:90487442-90487461 | Msa0436720:intron | 60.0% |
| !! | GATGGTGGACGTGGCTATGG+TGG | - | chr3_2:90487445-90487464 | Msa0436720:intron | 60.0% |
| GACGTGGCTATGGTGGCAGA+GGG | - | chr3_2:90487452-90487471 | Msa0436720:intron | 60.0% | |
| ! | TGCTTTTCGTGGACGGGGAC+GGG | - | chr3_2:90487495-90487514 | Msa0436720:intron | 60.0% |
| GCTATGGTGCCCAGCCAGTT+GGG | - | chr3_2:90487518-90487537 | Msa0436720:intron | 60.0% | |
| GGTGCAGCTGTCTGATCACC+TGG | - | chr3_2:90487986-90488005 | Msa0436720:CDS | 60.0% | |
| GAAGGGGAAGGGGTCGTGGA+AGG | - | chr3_2:90487219-90487238 | Msa0436720:intron | 65.0% | |
| AGGGGAAGGGGTCGTGGAAG+GGG | - | chr3_2:90487221-90487240 | Msa0436720:intron | 65.0% | |
| AAGGGGTCGTGGAAGGGGCA+GGG | - | chr3_2:90487226-90487245 | Msa0436720:intron | 65.0% | |
| AGGGGCAGGGGTAGAGGTAG+AGG | - | chr3_2:90487239-90487258 | Msa0436720:intron | 65.0% | |
| GGACGTGGCTATGGTGGCAG+AGG | - | chr3_2:90487451-90487470 | Msa0436720:intron | 65.0% | |
| ! | GCTTTTCGTGGACGGGGACG+GGG | - | chr3_2:90487496-90487515 | Msa0436720:intron | 65.0% |
| GGCTATGGTGCCCAGCCAGT+TGG | - | chr3_2:90487517-90487536 | Msa0436720:intron | 65.0% | |
| GATGCACCACCTGCACCTCG+TGG | - | chr3_2:90487562-90487581 | Msa0436720:intron | 65.0% | |
| TGATGTGCAGGCCGAGGTCG+TGG | - | chr3_2:90487923-90487942 | Msa0436720:CDS | 65.0% | |
| TGCAGGCCGAGGTCGTGGAA+GGG | - | chr3_2:90487928-90487947 | Msa0436720:CDS | 65.0% | |
| CCCTTCCCCTTCCACGACCT+CGG | + | chr3_2:90487937-90487956 | None:intergenic | 65.0% | |
| CCGAGGTCGTGGAAGGGGAA+GGG | - | chr3_2:90487934-90487953 | Msa0436720:CDS | 65.0% | |
| CGAGGTCGTGGAAGGGGAAG+GGG | - | chr3_2:90487935-90487954 | Msa0436720:CDS | 65.0% | |
| CTGCATCACGACCACGCCCA+CGG | + | chr3_2:90487961-90487980 | None:intergenic | 65.0% | |
| CGAGGAAGGGGAAGGGGTCG+TGG | - | chr3_2:90487215-90487234 | Msa0436720:intron | 70.0% | |
| GAAGGGGTCGTGGAAGGGGC+AGG | - | chr3_2:90487225-90487244 | Msa0436720:intron | 70.0% | |
| AGGGGTCGTGGAAGGGGCAG+GGG | - | chr3_2:90487227-90487246 | Msa0436720:intron | 70.0% | |
| CGTGGAAGGGGCAGGGGTAG+AGG | - | chr3_2:90487233-90487252 | Msa0436720:intron | 70.0% | |
| ! | CAGAGGGCGCGTCCGTGCAT+GGG | - | chr3_2:90487468-90487487 | Msa0436720:intron | 70.0% |
| ! | AGAGGGCGCGTCCGTGCATG+GGG | - | chr3_2:90487469-90487488 | Msa0436720:intron | 70.0% |
| GTGCAGGCCGAGGTCGTGGA+AGG | - | chr3_2:90487927-90487946 | Msa0436720:CDS | 70.0% | |
| GCAGGCCGAGGTCGTGGAAG+GGG | - | chr3_2:90487929-90487948 | Msa0436720:CDS | 70.0% | |
| GCCGAGGTCGTGGAAGGGGA+AGG | - | chr3_2:90487933-90487952 | Msa0436720:CDS | 70.0% | |
| GTGGAAGGGGAAGGGGCCGT+GGG | - | chr3_2:90487942-90487961 | Msa0436720:CDS | 70.0% | |
| CGTGGGCGTGGTCGTGATGC+AGG | - | chr3_2:90487959-90487978 | Msa0436720:CDS | 70.0% | |
| CGTGGTCGTGATGCAGGCCG+TGG | - | chr3_2:90487965-90487984 | Msa0436720:CDS | 70.0% | |
| ! | GCAGAGGGCGCGTCCGTGCA+TGG | - | chr3_2:90487467-90487486 | Msa0436720:intron | 75.0% |
| CGTGGACGGGGACGGGGCTA+TGG | - | chr3_2:90487502-90487521 | Msa0436720:intron | 75.0% | |
| CGTGGAAGGGGAAGGGGCCG+TGG | - | chr3_2:90487941-90487960 | Msa0436720:CDS | 75.0% | |
| ! | AGGGGAAGGGGCCGTGGGCG+TGG | - | chr3_2:90487947-90487966 | Msa0436720:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 90483701 | 90488348 | 90483701 | ID=Msa0436720;Name=Msa0436720 |
| chr3_2 | mRNA | 90483701 | 90488348 | 90483701 | ID=Msa0436720-mRNA-1;Parent=Msa0436720;Name=Msa0436720-mRNA-1;_AED=0.38;_eAED=0.38;_QI=202|0.87|0.77|1|0.87|0.88|9|348|245 |
| chr3_2 | exon | 90483701 | 90484116 | 90483701 | ID=Msa0436720-mRNA-1:exon:26928;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90484466 | 90484642 | 90484466 | ID=Msa0436720-mRNA-1:exon:26927;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90484789 | 90484851 | 90484789 | ID=Msa0436720-mRNA-1:exon:26926;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90484943 | 90485004 | 90484943 | ID=Msa0436720-mRNA-1:exon:26925;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90485970 | 90486044 | 90485970 | ID=Msa0436720-mRNA-1:exon:26924;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90486136 | 90486224 | 90486136 | ID=Msa0436720-mRNA-1:exon:26923;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90486310 | 90486390 | 90486310 | ID=Msa0436720-mRNA-1:exon:26922;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90487902 | 90488024 | 90487902 | ID=Msa0436720-mRNA-1:exon:26921;Parent=Msa0436720-mRNA-1 |
| chr3_2 | exon | 90488147 | 90488348 | 90488147 | ID=Msa0436720-mRNA-1:exon:26920;Parent=Msa0436720-mRNA-1 |
| chr3_2 | five_prime_UTR | 90488147 | 90488348 | 90488147 | ID=Msa0436720-mRNA-1:five_prime_utr;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90487902 | 90488024 | 90487902 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90486310 | 90486390 | 90486310 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90486136 | 90486224 | 90486136 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90485970 | 90486044 | 90485970 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90484943 | 90485004 | 90484943 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90484789 | 90484851 | 90484789 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90484466 | 90484642 | 90484466 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | CDS | 90484049 | 90484116 | 90484049 | ID=Msa0436720-mRNA-1:cds;Parent=Msa0436720-mRNA-1 |
| chr3_2 | three_prime_UTR | 90483701 | 90484048 | 90483701 | ID=Msa0436720-mRNA-1:three_prime_utr;Parent=Msa0436720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
