Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402770 | KAG5062480.1 | 60.000 | 120 | 29 | 3 | 1 | 101 | 1 | 120 | 4.91e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402770 | sp|Q6ICX4|PTBP3_ARATH | 72.727 | 66 | 18 | 0 | 36 | 101 | 139 | 204 | 4.10e-27 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402770 | A0A445LLC4 | 60.000 | 120 | 29 | 3 | 1 | 101 | 1 | 120 | 2.35e-34 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1402770 | Msa1402790 | 0.816756 | 4.693606e-52 | -8.615850e-47 |
| Msa0768370 | Msa1402770 | 0.804101 | 2.539464e-49 | -8.615850e-47 |
| Msa1319800 | Msa1402770 | 0.819373 | 1.201515e-52 | -8.615850e-47 |
| Msa0986360 | Msa1402770 | 0.810753 | 9.856460e-51 | -8.615850e-47 |
| Msa0916690 | Msa1402770 | 0.811619 | 6.396269e-51 | -8.615850e-47 |
| Msa0958550 | Msa1402770 | 0.801587 | 8.394467e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402770 | MtrunA17_Chr6g0464521 | 85.075 | 67 | 10 | 0 | 35 | 101 | 137 | 203 | 4.47e-36 | 122 |
| Msa1402770 | MtrunA17_Chr6g0464571 | 83.333 | 66 | 11 | 0 | 36 | 101 | 132 | 197 | 1.05e-32 | 117 |
| Msa1402770 | MtrunA17_Chr1g0201711 | 76.119 | 67 | 16 | 0 | 35 | 101 | 137 | 203 | 4.62e-31 | 113 |
| Msa1402770 | MtrunA17_Chr6g0464551 | 73.913 | 69 | 10 | 2 | 34 | 101 | 22 | 83 | 1.53e-25 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402770 | AT1G43190.3 | 72.727 | 66 | 18 | 0 | 36 | 101 | 137 | 202 | 3.81e-28 | 105 |
| Msa1402770 | AT1G43190.2 | 72.727 | 66 | 18 | 0 | 36 | 101 | 139 | 204 | 4.16e-28 | 105 |
| Msa1402770 | AT1G43190.1 | 72.727 | 66 | 18 | 0 | 36 | 101 | 139 | 204 | 4.16e-28 | 105 |
Find 30 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTGCATCCTATGACTA+TGG | 0.249991 | tig0022921:+153 | Msa1402770:CDS |
| TCTGCTCCGTGGGCAGATTT+AGG | 0.251497 | tig0022921:-3182 | None:intergenic |
| GTCTGCGGTCGCCAACTCTT+CGG | 0.408841 | tig0022921:+92 | Msa1402770:CDS |
| AACAACCTGCAGTGCACCTC+TGG | 0.424869 | tig0022921:-2462 | None:intergenic |
| CAAAGATGAACAAGAAAAGT+TGG | 0.447983 | tig0022921:-3259 | None:intergenic |
| ATAGGACGTACTAGTGAAAT+CGG | 0.448560 | tig0022921:-3209 | None:intergenic |
| TATAGCACATCCATAGTCAT+AGG | 0.464275 | tig0022921:-163 | None:intergenic |
| TTATGATGGTTGCTGTCAGC+TGG | 0.467525 | tig0022921:+2586 | Msa1402770:CDS |
| TAGGGACGAAATGTTTATGA+TGG | 0.480249 | tig0022921:+2572 | Msa1402770:intron |
| ATAGTAACTAAGAATTCGAT+TGG | 0.508897 | tig0022921:-124 | None:intergenic |
| CTCCGTGGGCAGATTTAGGT+TGG | 0.519541 | tig0022921:-3178 | None:intergenic |
| GACTGCCAGAGGTGCACTGC+AGG | 0.523555 | tig0022921:+2457 | Msa1402770:CDS |
| TGAAAAGAACCCACCGGTGA+GGG | 0.541910 | tig0022921:-3342 | None:intergenic |
| GGGCTGAGCATCCGAAGAGT+TGG | 0.543341 | tig0022921:-103 | None:intergenic |
| TCTCATAGTGGATGAGAGCT+TGG | 0.546075 | tig0022921:-2418 | None:intergenic |
| CACTCTGACGAGTCTCATAG+TGG | 0.548734 | tig0022921:-2430 | None:intergenic |
| AATACAATAATGATCGATCA+AGG | 0.549219 | tig0022921:+3056 | Msa1402770:CDS |
| AGGTTCTGGACCCTCACCGG+TGG | 0.554775 | tig0022921:+3332 | Msa1402770:three_prime_UTR |
| TCAAGGTTCTGGACCCTCAC+CGG | 0.554824 | tig0022921:+3329 | Msa1402770:three_prime_UTR |
| CAGTGCACCTCTGGCAGTCA+CGG | 0.563683 | tig0022921:-2453 | None:intergenic |
| TAGTAACTAAGAATTCGATT+GGG | 0.576285 | tig0022921:-123 | None:intergenic |
| AATCGGCCATTCTGCTCCGT+GGG | 0.579265 | tig0022921:-3192 | None:intergenic |
| CAGAGTGCCGTGACTGCCAG+AGG | 0.584517 | tig0022921:+2446 | Msa1402770:CDS |
| AAATCGGCCATTCTGCTCCG+TGG | 0.590986 | tig0022921:-3193 | None:intergenic |
| GGTTCTGGACCCTCACCGGT+GGG | 0.615835 | tig0022921:+3333 | Msa1402770:three_prime_UTR |
| ATATTATAAAACATTCACAT+AGG | 0.649914 | tig0022921:-3227 | None:intergenic |
| AATCTGCCCACGGAGCAGAA+TGG | 0.650106 | tig0022921:+3186 | Msa1402770:CDS |
| GTGAAAAGAACCCACCGGTG+AGG | 0.657687 | tig0022921:-3343 | None:intergenic |
| TACCAACCTAAATCTGCCCA+CGG | 0.661615 | tig0022921:+3176 | Msa1402770:CDS |
| TTAGCGTGAAAAGAACCCAC+CGG | 0.699589 | tig0022921:-3348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTTTTTTTTTTA+AGG | + | tig0022921:1180-1199 | Msa1402770:intron | 0.0% |
| !!! | TAATTTTTAGAGTATAAAAT+TGG | - | tig0022921:572-591 | None:intergenic | 10.0% |
| !!! | TTATAAAACTATTTTACTAA+CGG | - | tig0022921:1417-1436 | None:intergenic | 10.0% |
| !! | TCAAAAAATAATAGTATTAT+TGG | - | tig0022921:2308-2327 | None:intergenic | 10.0% |
| !!! | TTAGTATTAGATTTTTATAT+TGG | - | tig0022921:2905-2924 | None:intergenic | 10.0% |
| !!! | AATTTCTTTTACATTTCTTA+TGG | + | tig0022921:358-377 | Msa1402770:intron | 15.0% |
| !!! | TTTAAAAATTTTGAACATTC+AGG | - | tig0022921:633-652 | None:intergenic | 15.0% |
| !! | AAAATAACAAGAGTAAAAAA+TGG | + | tig0022921:1012-1031 | Msa1402770:intron | 15.0% |
| !! | TTATATTACTCCTAAAATAA+AGG | - | tig0022921:1330-1349 | None:intergenic | 15.0% |
| !! | ATATTATAAAACATTCACAT+AGG | - | tig0022921:3230-3249 | None:intergenic | 15.0% |
| !! | GAAATTAGATTATATTTCAC+TGG | + | tig0022921:391-410 | Msa1402770:intron | 20.0% |
| !!! | CATGAAAAAAATGAACTTTT+AGG | - | tig0022921:510-529 | None:intergenic | 20.0% |
| !!! | CTAAAAGTTCATTTTTTTCA+TGG | + | tig0022921:508-527 | Msa1402770:intron | 20.0% |
| !! | GGTATGTTTATTAAATGTAA+TGG | + | tig0022921:771-790 | Msa1402770:intron | 20.0% |
| !! | ATGTTTATTAAATGTAATGG+TGG | + | tig0022921:774-793 | Msa1402770:intron | 20.0% |
| !!! | CTTTTAGTTTATGATGTTTA+CGG | - | tig0022921:805-824 | None:intergenic | 20.0% |
| !! | GATAAACATCATCATAAATA+TGG | - | tig0022921:845-864 | None:intergenic | 20.0% |
| !!! | AAATTTTAACACAATCAAGA+AGG | - | tig0022921:1120-1139 | None:intergenic | 20.0% |
| !! | TAATTAAACAATACAATGTG+TGG | + | tig0022921:1206-1225 | Msa1402770:intron | 20.0% |
| !! | AATTAAACAATACAATGTGT+GGG | + | tig0022921:1207-1226 | Msa1402770:intron | 20.0% |
| !! | TCTATTATTATGAAGAAAAG+AGG | + | tig0022921:1270-1289 | Msa1402770:intron | 20.0% |
| !! | CTATTATTATGAAGAAAAGA+GGG | + | tig0022921:1271-1290 | Msa1402770:intron | 20.0% |
| !!! | TTTTCTGAAGTTTTTTCAAT+AGG | + | tig0022921:1469-1488 | Msa1402770:intron | 20.0% |
| !! | ACTTAAGAATTACTTTACTA+TGG | - | tig0022921:1503-1522 | None:intergenic | 20.0% |
| !!! | TTTTTGTACATAATCTAAAC+TGG | + | tig0022921:1707-1726 | Msa1402770:intron | 20.0% |
| !!! | TTTTTGTTAAGTTTTTCTGA+TGG | + | tig0022921:1810-1829 | Msa1402770:intron | 20.0% |
| !!! | TTTTGTTAAGTTTTTCTGAT+GGG | + | tig0022921:1811-1830 | Msa1402770:intron | 20.0% |
| !! | AAATGAAATATAAGCAAAAG+TGG | - | tig0022921:2221-2240 | None:intergenic | 20.0% |
| !!! | CTTTTGCTTATATTTCATTT+CGG | + | tig0022921:2221-2240 | Msa1402770:intron | 20.0% |
| !! | CATTATATTTGAATTTGTGT+AGG | + | tig0022921:2392-2411 | Msa1402770:intron | 20.0% |
| !!! | TAATTCTGATGTTATTTTTC+TGG | + | tig0022921:2522-2541 | Msa1402770:intron | 20.0% |
| !!! | TACGTTGTATATATTAGTTT+TGG | + | tig0022921:2655-2674 | Msa1402770:intron | 20.0% |
| !!! | ACGTTGTATATATTAGTTTT+GGG | + | tig0022921:2656-2675 | Msa1402770:intron | 20.0% |
| !! | TGAAAAGAGTTTATAAAAAG+TGG | + | tig0022921:2838-2857 | Msa1402770:intron | 20.0% |
| !! | TAAAAGAAAAGAGTAAAAGA+AGG | - | tig0022921:2980-2999 | None:intergenic | 20.0% |
| ! | TAGTAACTAAGAATTCGATT+GGG | - | tig0022921:126-145 | None:intergenic | 25.0% |
| ! | ATAGTAACTAAGAATTCGAT+TGG | - | tig0022921:127-146 | None:intergenic | 25.0% |
| ! | ATATGAAATCAGTTTCTTGT+TGG | + | tig0022921:320-339 | Msa1402770:intron | 25.0% |
| ! | TATAAAATTGGTTAAGAGAC+TGG | - | tig0022921:560-579 | None:intergenic | 25.0% |
| ! | TAATAAACATACCTTATCTG+TGG | - | tig0022921:764-783 | None:intergenic | 25.0% |
| ! | AACATCATCATAAATATGGT+TGG | - | tig0022921:841-860 | None:intergenic | 25.0% |
| ! | CATAAACATCATCACAAATA+AGG | + | tig0022921:956-975 | Msa1402770:intron | 25.0% |
| !! | TGAATTTGTAGAAAAGCATA+TGG | + | tig0022921:1142-1161 | Msa1402770:intron | 25.0% |
| !! | GAATTTGTAGAAAAGCATAT+GGG | + | tig0022921:1143-1162 | Msa1402770:intron | 25.0% |
| !!! | AAAGTCAACTCCTTTATTTT+AGG | + | tig0022921:1317-1336 | Msa1402770:intron | 25.0% |
| ! | CAAAAGAAATGTAACTGTTA+TGG | + | tig0022921:1636-1655 | Msa1402770:intron | 25.0% |
| ! | TCATAGTATTGTAACTCTTA+TGG | + | tig0022921:1842-1861 | Msa1402770:intron | 25.0% |
| !! | ACCTTTCAATAAGATTTTGA+CGG | + | tig0022921:2265-2284 | Msa1402770:intron | 25.0% |
| ! | AAGCAAATTCCTTATTGTAA+TGG | + | tig0022921:2358-2377 | Msa1402770:intron | 25.0% |
| ! | AATCTTCATCCATTACAATA+AGG | - | tig0022921:2370-2389 | None:intergenic | 25.0% |
| !! | ACTTTTTACAAACTCTTTTC+AGG | - | tig0022921:2719-2738 | None:intergenic | 25.0% |
| ! | TGAAAAGAGTTTGTAAAAAG+TGG | + | tig0022921:2718-2737 | Msa1402770:intron | 25.0% |
| ! | AATACAATAATGATCGATCA+AGG | + | tig0022921:3056-3075 | Msa1402770:CDS | 25.0% |
| CTTATCAACTCTATTCACAT+AGG | - | tig0022921:420-439 | None:intergenic | 30.0% | |
| !!! | AGTTCATTTTTTTCATGGTC+AGG | + | tig0022921:513-532 | Msa1402770:intron | 30.0% |
| AAACTATCCTCTACCATAAA+AGG | - | tig0022921:714-733 | None:intergenic | 30.0% | |
| TTTATCCGCGAGTTAATAAA+AGG | + | tig0022921:859-878 | Msa1402770:intron | 30.0% | |
| ! | CCTCTATGATGATGTTTATT+TGG | - | tig0022921:917-936 | None:intergenic | 30.0% |
| CCAAATAAACATCATCATAG+AGG | + | tig0022921:914-933 | Msa1402770:intron | 30.0% | |
| ATAGAAACATGACCAAAAAC+AGG | - | tig0022921:1085-1104 | None:intergenic | 30.0% | |
| TTGTATTTCCCTCCTATAAA+AGG | - | tig0022921:1299-1318 | None:intergenic | 30.0% | |
| CCATAAATGTGGAAAATTTG+GGG | - | tig0022921:1587-1606 | None:intergenic | 30.0% | |
| GCCATAAATGTGGAAAATTT+GGG | - | tig0022921:1588-1607 | None:intergenic | 30.0% | |
| ! | ATTTCTTTTGTCAAGTAGTC+AGG | - | tig0022921:1626-1645 | None:intergenic | 30.0% |
| !! | AAGTTTTTCTGATGGGTATA+TGG | + | tig0022921:1818-1837 | Msa1402770:intron | 30.0% |
| !! | AGTTTTTCTGATGGGTATAT+GGG | + | tig0022921:1819-1838 | Msa1402770:intron | 30.0% |
| !!! | GGGTTTTAAAGAACTATTTC+GGG | - | tig0022921:2086-2105 | None:intergenic | 30.0% |
| !!! | GGGGTTTTAAAGAACTATTT+CGG | - | tig0022921:2087-2106 | None:intergenic | 30.0% |
| AGTTGAAATGTTGATGTATG+TGG | - | tig0022921:2197-2216 | None:intergenic | 30.0% | |
| TTGCTTATATTTCATTTCGG+AGG | + | tig0022921:2224-2243 | Msa1402770:intron | 30.0% | |
| TGCTTATATTTCATTTCGGA+GGG | + | tig0022921:2225-2244 | Msa1402770:intron | 30.0% | |
| TCCGTCAAAATCTTATTGAA+AGG | - | tig0022921:2269-2288 | None:intergenic | 30.0% | |
| !! | TAAGATTTTGACGGAAAACA+CGG | + | tig0022921:2274-2293 | Msa1402770:intron | 30.0% |
| !!! | TCGTACTTTTGGAATTTTCT+AGG | + | tig0022921:2553-2572 | Msa1402770:intron | 30.0% |
| !!! | CGTACTTTTGGAATTTTCTA+GGG | + | tig0022921:2554-2573 | Msa1402770:intron | 30.0% |
| TATATACAACGTAATTGCTG+AGG | - | tig0022921:2648-2667 | None:intergenic | 30.0% | |
| !!! | TATTTTTTCAACGTAGGACT+TGG | - | tig0022921:2693-2712 | None:intergenic | 30.0% |
| !!! | AGGTCTTATTTTTTCAACGT+AGG | - | tig0022921:2699-2718 | None:intergenic | 30.0% |
| AAAATCAGCTAGTAAGAAGA+GGG | - | tig0022921:2867-2886 | None:intergenic | 30.0% | |
| TAAAATCAGCTAGTAAGAAG+AGG | - | tig0022921:2868-2887 | None:intergenic | 30.0% | |
| !! | CTTCTTACTAGCTGATTTTA+AGG | + | tig0022921:2868-2887 | Msa1402770:intron | 30.0% |
| !! | CTGATTTTAAGGATGAGTTA+GGG | + | tig0022921:2879-2898 | Msa1402770:intron | 30.0% |
| AATAATGATCGATCAAGGTT+AGG | + | tig0022921:3061-3080 | Msa1402770:intron | 30.0% | |
| CAAAGATGAACAAGAAAAGT+TGG | - | tig0022921:3262-3281 | None:intergenic | 30.0% | |
| !!! | TCATCTTCTGTGAGATTTTT+TGG | + | tig0022921:3305-3324 | Msa1402770:three_prime_UTR | 30.0% |
| TATAGCACATCCATAGTCAT+AGG | - | tig0022921:166-185 | None:intergenic | 35.0% | |
| ! | TAACAAGTATTTTCTCGCCA+TGG | + | tig0022921:184-203 | Msa1402770:intron | 35.0% |
| CAATCTTATCCACATATCCA+TGG | - | tig0022921:204-223 | None:intergenic | 35.0% | |
| !! | TTGGTTAAGAGACTGGTTTA+AGG | - | tig0022921:553-572 | None:intergenic | 35.0% |
| !! | TCTTGTTTCAAGGCCTTTTA+TGG | + | tig0022921:698-717 | Msa1402770:intron | 35.0% |
| ! | TAAGGCCTTTTATTAACTCG+CGG | - | tig0022921:867-886 | None:intergenic | 35.0% |
| GTGTACTCAATGATGTGATA+AGG | - | tig0022921:885-904 | None:intergenic | 35.0% | |
| CATGACCAAAAACAGGATTA+CGG | - | tig0022921:1078-1097 | None:intergenic | 35.0% | |
| TAGCTAGGACATTATTTGCA+GGG | + | tig0022921:1548-1567 | Msa1402770:intron | 35.0% | |
| ! | CCCCAAATTTTCCACATTTA+TGG | + | tig0022921:1584-1603 | Msa1402770:intron | 35.0% |
| CGCCATAAATGTGGAAAATT+TGG | - | tig0022921:1589-1608 | None:intergenic | 35.0% | |
| ATATTCACACGCCATAAATG+TGG | - | tig0022921:1598-1617 | None:intergenic | 35.0% | |
| AAAGAACTATTTCGGGAATG+TGG | - | tig0022921:2079-2098 | None:intergenic | 35.0% | |
| AAACCCCAATCTTGTACATT+TGG | + | tig0022921:2100-2119 | Msa1402770:intron | 35.0% | |
| AGGTCCAAATGTACAAGATT+GGG | - | tig0022921:2107-2126 | None:intergenic | 35.0% | |
| !! | AAGATTTTGACGGAAAACAC+GGG | + | tig0022921:2275-2294 | Msa1402770:intron | 35.0% |
| ! | TGGAATGATGATCGTACTTT+TGG | + | tig0022921:2542-2561 | Msa1402770:intron | 35.0% |
| TAGGGACGAAATGTTTATGA+TGG | + | tig0022921:2572-2591 | Msa1402770:intron | 35.0% | |
| AGATTGGTGCATGACTTATT+CGG | - | tig0022921:2768-2787 | None:intergenic | 35.0% | |
| !! | GCTGATTTTAAGGATGAGTT+AGG | + | tig0022921:2878-2897 | Msa1402770:intron | 35.0% |
| AAGAGTAAAAGAAGGTGAGA+GGG | - | tig0022921:2972-2991 | None:intergenic | 35.0% | |
| AAAGAGTAAAAGAAGGTGAG+AGG | - | tig0022921:2973-2992 | None:intergenic | 35.0% | |
| ATAGGACGTACTAGTGAAAT+CGG | - | tig0022921:3212-3231 | None:intergenic | 35.0% | |
| !!! | CTGTGAGATTTTTTGGATCA+AGG | + | tig0022921:3312-3331 | Msa1402770:three_prime_UTR | 35.0% |
| !!! | GATTTTTTGGATCAAGGTTC+TGG | + | tig0022921:3318-3337 | Msa1402770:three_prime_UTR | 35.0% |
| ! | ATTTTCTCGCCATGGATATG+TGG | + | tig0022921:192-211 | Msa1402770:intron | 40.0% |
| ATTTCACGTGATCCGAAAAC+AGG | + | tig0022921:228-247 | Msa1402770:intron | 40.0% | |
| CCTTGAAACAAGACTCTTGT+TGG | - | tig0022921:691-710 | None:intergenic | 40.0% | |
| !! | CCAACAAGAGTCTTGTTTCA+AGG | + | tig0022921:688-707 | Msa1402770:intron | 40.0% |
| ! | TTCAAGGCCTTTTATGGTAG+AGG | + | tig0022921:704-723 | Msa1402770:intron | 40.0% |
| AAAACAGGATTACGGAACTG+TGG | - | tig0022921:1070-1089 | None:intergenic | 40.0% | |
| ! | CAGTTCCGTAATCCTGTTTT+TGG | + | tig0022921:1070-1089 | Msa1402770:intron | 40.0% |
| ! | GAAAAGAGGGCTCCTTTTAT+AGG | + | tig0022921:1284-1303 | Msa1402770:intron | 40.0% |
| TACCAACTGAGCTTCACTTA+CGG | - | tig0022921:1530-1549 | None:intergenic | 40.0% | |
| GTAGCTAGGACATTATTTGC+AGG | + | tig0022921:1547-1566 | Msa1402770:intron | 40.0% | |
| AGCTAGGACATTATTTGCAG+GGG | + | tig0022921:1549-1568 | Msa1402770:intron | 40.0% | |
| ! | TCTTTTGTCAAGTAGTCAGG+TGG | - | tig0022921:1623-1642 | None:intergenic | 40.0% |
| GGTCCAAATGTACAAGATTG+GGG | - | tig0022921:2106-2125 | None:intergenic | 40.0% | |
| CAGGTCCAAATGTACAAGAT+TGG | - | tig0022921:2108-2127 | None:intergenic | 40.0% | |
| CAATCTTGTACATTTGGACC+TGG | + | tig0022921:2106-2125 | Msa1402770:intron | 40.0% | |
| TGTGGATCTTTCATTCCAGA+GGG | - | tig0022921:2145-2164 | None:intergenic | 40.0% | |
| TTGTGGATCTTTCATTCCAG+AGG | - | tig0022921:2146-2165 | None:intergenic | 40.0% | |
| ! | TCTGGAATGAAAGATCCACA+AGG | + | tig0022921:2145-2164 | Msa1402770:intron | 40.0% |
| ATCCACAAGGTCAATGTATG+TGG | + | tig0022921:2158-2177 | Msa1402770:intron | 40.0% | |
| AACCACATACATTGACCTTG+TGG | - | tig0022921:2163-2182 | None:intergenic | 40.0% | |
| ! | TTATTCGGTGGATGGCTTTA+AGG | - | tig0022921:2753-2772 | None:intergenic | 40.0% |
| AGTTTATTCCTCATCTCTGC+AGG | + | tig0022921:3148-3167 | Msa1402770:intron | 40.0% | |
| GTTTATTCCTCATCTCTGCA+GGG | + | tig0022921:3149-3168 | Msa1402770:intron | 40.0% | |
| ACTGCTGCATCCTATGACTA+TGG | + | tig0022921:153-172 | Msa1402770:CDS | 45.0% | |
| ! | TCCAATCGAGCACCTGTTTT+CGG | - | tig0022921:243-262 | None:intergenic | 45.0% |
| TGCTCGATTGGAAAAAGCAG+AGG | + | tig0022921:251-270 | Msa1402770:intron | 45.0% | |
| GATCGTGTAAGATCTCTCAG+TGG | - | tig0022921:488-507 | None:intergenic | 45.0% | |
| ACCTCTCTCTACCACAGATA+AGG | + | tig0022921:750-769 | Msa1402770:intron | 45.0% | |
| ACCTTATCTGTGGTAGAGAG+AGG | - | tig0022921:754-773 | None:intergenic | 45.0% | |
| ! | AAGAGGGCTCCTTTTATAGG+AGG | + | tig0022921:1287-1306 | Msa1402770:intron | 45.0% |
| ! | AGAGGGCTCCTTTTATAGGA+GGG | + | tig0022921:1288-1307 | Msa1402770:intron | 45.0% |
| ACCAACTGAGCTTCACTTAC+GGG | - | tig0022921:1529-1548 | None:intergenic | 45.0% | |
| AGGACATTATTTGCAGGGGT+CGG | + | tig0022921:1553-1572 | Msa1402770:intron | 45.0% | |
| TTTCGGGAATGTGGTGAGTT+GGG | - | tig0022921:2070-2089 | None:intergenic | 45.0% | |
| ATTTCGGGAATGTGGTGAGT+TGG | - | tig0022921:2071-2090 | None:intergenic | 45.0% | |
| !! | TCTCATAGTGGATGAGAGCT+TGG | - | tig0022921:2421-2440 | None:intergenic | 45.0% |
| TTATGATGGTTGCTGTCAGC+TGG | + | tig0022921:2586-2605 | Msa1402770:CDS | 45.0% | |
| GGACATTCAGTTCACGATGT+AGG | + | tig0022921:2607-2626 | Msa1402770:intron | 45.0% | |
| ! | TGCATGACTTATTCGGTGGA+TGG | - | tig0022921:2761-2780 | None:intergenic | 45.0% |
| TTGGTGCATGACTTATTCGG+TGG | - | tig0022921:2765-2784 | None:intergenic | 45.0% | |
| TGCACCAATCTCCATATTGC+TGG | + | tig0022921:2777-2796 | Msa1402770:intron | 45.0% | |
| GAGAGGGATACAAAATGAGC+TGG | - | tig0022921:2956-2975 | None:intergenic | 45.0% | |
| TACCAACCTAAATCTGCCCA+CGG | + | tig0022921:3176-3195 | Msa1402770:CDS | 45.0% | |
| TTAGCGTGAAAAGAACCCAC+CGG | - | tig0022921:3351-3370 | None:intergenic | 45.0% | |
| TCCGAAAACAGGTGCTCGAT+TGG | + | tig0022921:239-258 | Msa1402770:intron | 50.0% | |
| TCCCGTAAGTGAAGCTCAGT+TGG | + | tig0022921:1525-1544 | Msa1402770:intron | 50.0% | |
| !! | GTGAAGCTCAGTTGGTAGCT+AGG | + | tig0022921:1533-1552 | Msa1402770:intron | 50.0% |
| GGACATTATTTGCAGGGGTC+GGG | + | tig0022921:1554-1573 | Msa1402770:intron | 50.0% | |
| GACATTATTTGCAGGGGTCG+GGG | + | tig0022921:1555-1574 | Msa1402770:intron | 50.0% | |
| TCCTCGTTGCTTCAACCTAG+TGG | + | tig0022921:2017-2036 | Msa1402770:intron | 50.0% | |
| ! | ACCACTAGGTTGAAGCAACG+AGG | - | tig0022921:2021-2040 | None:intergenic | 50.0% |
| GTTGCTTCAACCTAGTGGTG+TGG | + | tig0022921:2022-2041 | Msa1402770:intron | 50.0% | |
| ATTCGCAAAGCCACACCACT+AGG | - | tig0022921:2035-2054 | None:intergenic | 50.0% | |
| GAGGGAGTAGCAGTAAATCC+AGG | - | tig0022921:2127-2146 | None:intergenic | 50.0% | |
| GGATTTACTGCTACTCCCTC+TGG | + | tig0022921:2127-2146 | Msa1402770:intron | 50.0% | |
| CACTCTGACGAGTCTCATAG+TGG | - | tig0022921:2433-2452 | None:intergenic | 50.0% | |
| CACGCCAGCAATATGGAGAT+TGG | - | tig0022921:2784-2803 | None:intergenic | 50.0% | |
| TCTCCATATTGCTGGCGTGA+CGG | + | tig0022921:2785-2804 | Msa1402770:intron | 50.0% | |
| GTAAAGTCCCTGCAGAGATG+AGG | - | tig0022921:3159-3178 | None:intergenic | 50.0% | |
| TGAAAAGAACCCACCGGTGA+GGG | - | tig0022921:3345-3364 | None:intergenic | 50.0% | |
| TGACGGAAAACACGGGCGAA+TGG | + | tig0022921:2282-2301 | Msa1402770:intron | 55.0% | |
| AACAACCTGCAGTGCACCTC+TGG | - | tig0022921:2465-2484 | None:intergenic | 55.0% | |
| CTCCATATTGCTGGCGTGAC+GGG | + | tig0022921:2786-2805 | Msa1402770:intron | 55.0% | |
| TCCATATTGCTGGCGTGACG+GGG | + | tig0022921:2787-2806 | Msa1402770:intron | 55.0% | |
| CTCCGTGGGCAGATTTAGGT+TGG | - | tig0022921:3181-3200 | None:intergenic | 55.0% | |
| TCTGCTCCGTGGGCAGATTT+AGG | - | tig0022921:3185-3204 | None:intergenic | 55.0% | |
| AATCTGCCCACGGAGCAGAA+TGG | + | tig0022921:3186-3205 | Msa1402770:CDS | 55.0% | |
| AATCGGCCATTCTGCTCCGT+GGG | - | tig0022921:3195-3214 | None:intergenic | 55.0% | |
| AAATCGGCCATTCTGCTCCG+TGG | - | tig0022921:3196-3215 | None:intergenic | 55.0% | |
| !! | TCAAGGTTCTGGACCCTCAC+CGG | + | tig0022921:3329-3348 | Msa1402770:three_prime_UTR | 55.0% |
| GTGAAAAGAACCCACCGGTG+AGG | - | tig0022921:3346-3365 | None:intergenic | 55.0% | |
| GTCTGCGGTCGCCAACTCTT+CGG | + | tig0022921:92-111 | Msa1402770:CDS | 60.0% | |
| GGGCTGAGCATCCGAAGAGT+TGG | - | tig0022921:106-125 | None:intergenic | 60.0% | |
| CAGTGCACCTCTGGCAGTCA+CGG | - | tig0022921:2456-2475 | None:intergenic | 60.0% | |
| ACCCCGTCACGCCAGCAATA+TGG | - | tig0022921:2791-2810 | None:intergenic | 60.0% | |
| !! | CAGAGTGCCGTGACTGCCAG+AGG | + | tig0022921:2446-2465 | Msa1402770:CDS | 65.0% |
| ! | GACTGCCAGAGGTGCACTGC+AGG | + | tig0022921:2457-2476 | Msa1402770:CDS | 65.0% |
| !! | AGGTTCTGGACCCTCACCGG+TGG | + | tig0022921:3332-3351 | Msa1402770:three_prime_UTR | 65.0% |
| !! | GGTTCTGGACCCTCACCGGT+GGG | + | tig0022921:3333-3352 | Msa1402770:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022921 | gene | 87 | 3454 | 87 | ID=Msa1402770;Name=Msa1402770 |
| tig0022921 | mRNA | 87 | 3454 | 87 | ID=Msa1402770-mRNA-1;Parent=Msa1402770;Name=Msa1402770-mRNA-1;_AED=0.26;_eAED=0.36;_QI=0|0.75|0.8|1|1|1|5|233|103 |
| tig0022921 | exon | 87 | 189 | 87 | ID=Msa1402770-mRNA-1:exon:19101;Parent=Msa1402770-mRNA-1 |
| tig0022921 | exon | 2414 | 2478 | 2414 | ID=Msa1402770-mRNA-1:exon:19102;Parent=Msa1402770-mRNA-1 |
| tig0022921 | exon | 2575 | 2624 | 2575 | ID=Msa1402770-mRNA-1:exon:19103;Parent=Msa1402770-mRNA-1 |
| tig0022921 | exon | 3036 | 3077 | 3036 | ID=Msa1402770-mRNA-1:exon:19104;Parent=Msa1402770-mRNA-1 |
| tig0022921 | exon | 3170 | 3454 | 3170 | ID=Msa1402770-mRNA-1:exon:19105;Parent=Msa1402770-mRNA-1 |
| tig0022921 | CDS | 87 | 189 | 87 | ID=Msa1402770-mRNA-1:cds;Parent=Msa1402770-mRNA-1 |
| tig0022921 | CDS | 2414 | 2478 | 2414 | ID=Msa1402770-mRNA-1:cds;Parent=Msa1402770-mRNA-1 |
| tig0022921 | CDS | 2575 | 2624 | 2575 | ID=Msa1402770-mRNA-1:cds;Parent=Msa1402770-mRNA-1 |
| tig0022921 | CDS | 3036 | 3077 | 3036 | ID=Msa1402770-mRNA-1:cds;Parent=Msa1402770-mRNA-1 |
| tig0022921 | CDS | 3170 | 3221 | 3170 | ID=Msa1402770-mRNA-1:cds;Parent=Msa1402770-mRNA-1 |
| tig0022921 | three_prime_UTR | 3222 | 3454 | 3222 | ID=Msa1402770-mRNA-1:three_prime_utr;Parent=Msa1402770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
