Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986360 | KEH25902.1 | 53.731 | 134 | 23 | 2 | 1 | 95 | 1 | 134 | 9.68e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986360 | A0A072U8C7 | 53.731 | 134 | 23 | 2 | 1 | 95 | 1 | 134 | 4.62e-35 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028480 | Msa0986360 | 0.812905 | 3.350790e-51 | -8.615850e-47 |
| Msa0102070 | Msa0986360 | 0.805350 | 1.392784e-49 | -8.615850e-47 |
| Msa0639610 | Msa0986360 | 0.801039 | 1.086878e-48 | -8.615850e-47 |
| Msa0726140 | Msa0986360 | 0.814727 | 1.329515e-51 | -8.615850e-47 |
| Msa0743810 | Msa0986360 | 0.825371 | 4.861133e-54 | -8.615850e-47 |
| Msa0745060 | Msa0986360 | 0.806190 | 9.278329e-50 | -8.615850e-47 |
| Msa0768290 | Msa0986360 | 0.804410 | 2.189641e-49 | -8.615850e-47 |
| Msa0768370 | Msa0986360 | 0.819376 | 1.199861e-52 | -8.615850e-47 |
| Msa0783160 | Msa0986360 | 0.826662 | 2.399102e-54 | -8.615850e-47 |
| Msa0825860 | Msa0986360 | 0.813444 | 2.551811e-51 | -8.615850e-47 |
| Msa0123810 | Msa0986360 | 0.825692 | 4.080600e-54 | -8.615850e-47 |
| Msa0232850 | Msa0986360 | 0.829328 | 5.472897e-55 | -8.615850e-47 |
| Msa0384800 | Msa0986360 | 0.814819 | 1.268419e-51 | -8.615850e-47 |
| Msa0414420 | Msa0986360 | 0.802628 | 5.126598e-49 | -8.615850e-47 |
| Msa0450000 | Msa0986360 | 0.806068 | 9.840758e-50 | -8.615850e-47 |
| Msa0452900 | Msa0986360 | 0.822798 | 1.953206e-53 | -8.615850e-47 |
| Msa0980090 | Msa0986360 | 0.807434 | 5.063607e-50 | -8.615850e-47 |
| Msa0986360 | Msa0989060 | 0.821750 | 3.420040e-53 | -8.615850e-47 |
| Msa0986360 | Msa0998690 | 0.826635 | 2.434967e-54 | -8.615850e-47 |
| Msa0986360 | Msa1016280 | 0.821910 | 3.140305e-53 | -8.615850e-47 |
| Msa0986360 | Msa1025360 | 0.806857 | 6.710772e-50 | -8.615850e-47 |
| Msa0986360 | Msa1025370 | 0.801182 | 1.015983e-48 | -8.615850e-47 |
| Msa0986360 | Msa1044840 | 0.807861 | 4.109331e-50 | -8.615850e-47 |
| Msa0986360 | Msa1060840 | 0.829209 | 5.850292e-55 | -8.615850e-47 |
| Msa0986360 | Msa1085740 | 0.810468 | 1.135319e-50 | -8.615850e-47 |
| Msa0986360 | Msa1092990 | 0.823151 | 1.616139e-53 | -8.615850e-47 |
| Msa0986360 | Msa1100980 | 0.816681 | 4.877431e-52 | -8.615850e-47 |
| Msa0986360 | Msa1109440 | 0.809290 | 2.035614e-50 | -8.615850e-47 |
| Msa0986360 | Msa1136090 | 0.823469 | 1.362428e-53 | -8.615850e-47 |
| Msa0986360 | Msa1139680 | 0.805272 | 1.445875e-49 | -8.615850e-47 |
| Msa0986360 | Msa1182090 | 0.857909 | 1.183603e-62 | -8.615850e-47 |
| Msa0986360 | Msa1230430 | 0.819754 | 9.838877e-53 | -8.615850e-47 |
| Msa0986360 | Msa1246880 | 0.812157 | 4.882205e-51 | -8.615850e-47 |
| Msa0986360 | Msa1269670 | 0.811680 | 6.202537e-51 | -8.615850e-47 |
| Msa0986360 | Msa1270270 | 0.801958 | 7.044285e-49 | -8.615850e-47 |
| Msa0986360 | Msa1273230 | 0.837518 | 4.958233e-57 | -8.615850e-47 |
| Msa0986360 | Msa1283330 | 0.818075 | 2.368508e-52 | -8.615850e-47 |
| Msa0986360 | Msa1285930 | 0.808282 | 3.343409e-50 | -8.615850e-47 |
| Msa0986360 | Msa1287800 | 0.801365 | 9.320063e-49 | -8.615850e-47 |
| Msa0986360 | Msa1287810 | 0.813793 | 2.138131e-51 | -8.615850e-47 |
| Msa0986360 | Msa1369430 | 0.815428 | 9.291707e-52 | -8.615850e-47 |
| Msa0986360 | Msa1386330 | 0.806809 | 6.869059e-50 | -8.615850e-47 |
| Msa0986360 | Msa1402770 | 0.810753 | 9.856460e-51 | -8.615850e-47 |
| Msa0986360 | Msa1402790 | 0.845953 | 2.943579e-59 | -8.615850e-47 |
| Msa0986360 | Msa1404000 | 0.823406 | 1.409239e-53 | -8.615850e-47 |
| Msa0986360 | Msa1415310 | 0.806354 | 8.566734e-50 | -8.615850e-47 |
| Msa0986360 | Msa1422180 | 0.803221 | 3.866507e-49 | -8.615850e-47 |
| Msa0267010 | Msa0986360 | 0.800880 | 1.171219e-48 | -8.615850e-47 |
| Msa0270520 | Msa0986360 | 0.800765 | 1.236115e-48 | -8.615850e-47 |
| Msa0342240 | Msa0986360 | 0.803392 | 3.563288e-49 | -8.615850e-47 |
| Msa0493000 | Msa0986360 | 0.802955 | 4.388165e-49 | -8.615850e-47 |
| Msa0598780 | Msa0986360 | 0.809836 | 1.553898e-50 | -8.615850e-47 |
| Msa0846330 | Msa0986360 | 0.813379 | 2.636679e-51 | -8.615850e-47 |
| Msa0846350 | Msa0986360 | 0.811952 | 5.410584e-51 | -8.615850e-47 |
| Msa0877250 | Msa0986360 | 0.821262 | 4.433612e-53 | -8.615850e-47 |
| Msa0884150 | Msa0986360 | 0.828427 | 9.044771e-55 | -8.615850e-47 |
| Msa0885280 | Msa0986360 | 0.800188 | 1.620113e-48 | -8.615850e-47 |
| Msa0907260 | Msa0986360 | 0.836979 | 6.810129e-57 | -8.615850e-47 |
| Msa0924050 | Msa0986360 | 0.815025 | 1.141942e-51 | -8.615850e-47 |
| Msa0956270 | Msa0986360 | 0.831051 | 2.078565e-55 | -8.615850e-47 |
| Msa0957860 | Msa0986360 | 0.814567 | 1.442770e-51 | -8.615850e-47 |
| Msa0957960 | Msa0986360 | 0.814932 | 1.197824e-51 | -8.615850e-47 |
| Msa0976670 | Msa0986360 | 0.801393 | 9.197757e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986360 | MtrunA17_Chr4g0058791 | 82.692 | 52 | 9 | 0 | 3 | 54 | 143 | 194 | 2.40e-25 | 94.7 |
| Msa0986360 | MtrunA17_Chr4g0058811 | 78.000 | 50 | 11 | 0 | 5 | 54 | 147 | 196 | 3.83e-22 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986360 | AT5G63060.2 | 62.500 | 48 | 18 | 0 | 7 | 54 | 115 | 162 | 1.32e-16 | 72.0 |
| Msa0986360 | AT5G63060.1 | 62.500 | 48 | 18 | 0 | 7 | 54 | 150 | 197 | 1.44e-16 | 72.4 |
Find 22 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAAATACTTGAATTTCT+TGG | 0.237378 | 6_4:+34552350 | Msa0986360:CDS |
| ATGAAACTTTGCCACCAATT+TGG | 0.294300 | 6_4:-34552997 | None:intergenic |
| GTTGCAATATTTGATCTTAG+AGG | 0.304567 | 6_4:+34552306 | Msa0986360:CDS |
| ATGAAACTTTGCCACCAAAT+TGG | 0.332012 | 6_4:+34552983 | Msa0986360:CDS |
| GAGCAAAATTTAACCTGTAA+AGG | 0.455636 | 6_4:+34553052 | Msa0986360:CDS |
| AATATTTATGACACAGGAAC+AGG | 0.462633 | 6_4:+34552203 | None:intergenic |
| AAACTTTGCCACCAATTTGG+TGG | 0.520792 | 6_4:-34552994 | None:intergenic |
| AAACTTTGCCACCAAATTGG+TGG | 0.527989 | 6_4:+34552986 | Msa0986360:CDS |
| GCATTGAGTAAGCTTCCCAC+TGG | 0.533695 | 6_4:+34552270 | Msa0986360:CDS |
| CACACCCTTTGATCATCTGC+GGG | 0.538520 | 6_4:-34552228 | None:intergenic |
| GTGTGCTTTCTTAATTGAGA+AGG | 0.540417 | 6_4:+34552248 | Msa0986360:CDS |
| AGGTCCCCGCAGATGATCAA+AGG | 0.541232 | 6_4:+34552223 | Msa0986360:CDS |
| CATTGAGTAAGCTTCCCACT+GGG | 0.565906 | 6_4:+34552271 | Msa0986360:CDS |
| ACTATTTGCTCTTCCCCAGT+GGG | 0.568043 | 6_4:-34552285 | None:intergenic |
| CTCTGCAGAAACTCTCAAGA+AGG | 0.568915 | 6_4:+34552948 | Msa0986360:intron |
| CTCTGCAGAAACTCTCAAGA+AGG | 0.568915 | 6_4:-34553032 | None:intergenic |
| GGTCCCCGCAGATGATCAAA+GGG | 0.578158 | 6_4:+34552224 | Msa0986360:CDS |
| AACTATTTGCTCTTCCCCAG+TGG | 0.588881 | 6_4:-34552286 | None:intergenic |
| AAGATGAATATTTATGACAC+AGG | 0.624088 | 6_4:+34552197 | None:intergenic |
| ACACACCCTTTGATCATCTG+CGG | 0.643216 | 6_4:-34552229 | None:intergenic |
| ATTGAGTAAGCTTCCCACTG+GGG | 0.730583 | 6_4:+34552272 | Msa0986360:CDS |
| ACACCCTTTGATCATCTGCG+GGG | 0.744212 | 6_4:-34552227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATCAACTAAAAATATT+TGG | - | chr6_4:34552399-34552418 | None:intergenic | 15.0% |
| !! | ACTTATCAACTAAAAATATT+TGG | - | chr6_4:34552399-34552418 | None:intergenic | 15.0% |
| !! | TCTTAAATACTTGAATTTCT+TGG | + | chr6_4:34552350-34552369 | Msa0986360:CDS | 20.0% |
| !! | TTTGTTCAAGATTAGAAAAT+AGG | - | chr6_4:34552436-34552455 | None:intergenic | 20.0% |
| !!! | CAAATACATTTCTTTACTTT+TGG | + | chr6_4:34552468-34552487 | Msa0986360:intron | 20.0% |
| !! | AAAAAAACAAAAGATCATGT+AGG | + | chr6_4:34552861-34552880 | Msa0986360:intron | 20.0% |
| !! | TCTTAAATACTTGAATTTCT+TGG | + | chr6_4:34552350-34552369 | Msa0986360:CDS | 20.0% |
| !! | TTTGTTCAAGATTAGAAAAT+AGG | - | chr6_4:34552436-34552455 | None:intergenic | 20.0% |
| !!! | CAAATACATTTCTTTACTTT+TGG | + | chr6_4:34552468-34552487 | Msa0986360:intron | 20.0% |
| !! | AAAAAAACAAAAGATCATGT+AGG | + | chr6_4:34552861-34552880 | Msa0986360:intron | 20.0% |
| !!! | TATTTAAGATCAGCATTTTC+TGG | - | chr6_4:34552339-34552358 | None:intergenic | 25.0% |
| ! | TTTCTAATCTTGAACAAAAG+TGG | + | chr6_4:34552438-34552457 | Msa0986360:intron | 25.0% |
| ! | ATTGTCTCAAGTATTATTTG+TGG | + | chr6_4:34552526-34552545 | Msa0986360:intron | 25.0% |
| ! | GTATGAATGATAAAAATGTC+AGG | - | chr6_4:34552810-34552829 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAATGTTATAG+TGG | - | chr6_4:34552832-34552851 | None:intergenic | 25.0% |
| !!! | TATTTAAGATCAGCATTTTC+TGG | - | chr6_4:34552339-34552358 | None:intergenic | 25.0% |
| ! | TTTCTAATCTTGAACAAAAG+TGG | + | chr6_4:34552438-34552457 | Msa0986360:intron | 25.0% |
| ! | ATTGTCTCAAGTATTATTTG+TGG | + | chr6_4:34552526-34552545 | Msa0986360:intron | 25.0% |
| ! | GTATGAATGATAAAAATGTC+AGG | - | chr6_4:34552810-34552829 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGAATGTTATAG+TGG | - | chr6_4:34552832-34552851 | None:intergenic | 25.0% |
| GTTGCAATATTTGATCTTAG+AGG | + | chr6_4:34552306-34552325 | Msa0986360:CDS | 30.0% | |
| AATACTTGAGACAATCGATT+GGG | - | chr6_4:34552521-34552540 | None:intergenic | 30.0% | |
| TAATACTTGAGACAATCGAT+TGG | - | chr6_4:34552522-34552541 | None:intergenic | 30.0% | |
| GTTAAAATCACATGCTTCTT+AGG | + | chr6_4:34552595-34552614 | Msa0986360:intron | 30.0% | |
| GTGAAGTAATAAAGAGATTG+AGG | - | chr6_4:34552709-34552728 | None:intergenic | 30.0% | |
| CCAAGATAACACATTAATCA+GGG | - | chr6_4:34552772-34552791 | None:intergenic | 30.0% | |
| ACCAAGATAACACATTAATC+AGG | - | chr6_4:34552773-34552792 | None:intergenic | 30.0% | |
| TGATTAATGTGTTATCTTGG+TGG | + | chr6_4:34552772-34552791 | Msa0986360:intron | 30.0% | |
| GATTAATGTGTTATCTTGGT+GGG | + | chr6_4:34552773-34552792 | Msa0986360:intron | 30.0% | |
| CCTGTAAAGGAAAATGAAAA+TGG | - | chr6_4:34552918-34552937 | None:intergenic | 30.0% | |
| ! | CCATTTTCATTTTCCTTTAC+AGG | + | chr6_4:34552915-34552934 | Msa0986360:intron | 30.0% |
| GAGCAAAATTTAACCTGTAA+AGG | - | chr6_4:34553052-34553071 | None:intergenic | 30.0% | |
| GAGCAAAATTTAACCTGTAA+AGG | + | chr6_4:34553052-34553071 | Msa0986360:CDS | 30.0% | |
| GTTGCAATATTTGATCTTAG+AGG | + | chr6_4:34552306-34552325 | Msa0986360:CDS | 30.0% | |
| AATACTTGAGACAATCGATT+GGG | - | chr6_4:34552521-34552540 | None:intergenic | 30.0% | |
| TAATACTTGAGACAATCGAT+TGG | - | chr6_4:34552522-34552541 | None:intergenic | 30.0% | |
| GTTAAAATCACATGCTTCTT+AGG | + | chr6_4:34552595-34552614 | Msa0986360:intron | 30.0% | |
| GTGAAGTAATAAAGAGATTG+AGG | - | chr6_4:34552709-34552728 | None:intergenic | 30.0% | |
| CCAAGATAACACATTAATCA+GGG | - | chr6_4:34552772-34552791 | None:intergenic | 30.0% | |
| ACCAAGATAACACATTAATC+AGG | - | chr6_4:34552773-34552792 | None:intergenic | 30.0% | |
| TGATTAATGTGTTATCTTGG+TGG | + | chr6_4:34552772-34552791 | Msa0986360:intron | 30.0% | |
| GATTAATGTGTTATCTTGGT+GGG | + | chr6_4:34552773-34552792 | Msa0986360:intron | 30.0% | |
| CCTGTAAAGGAAAATGAAAA+TGG | - | chr6_4:34552918-34552937 | None:intergenic | 30.0% | |
| ! | CCATTTTCATTTTCCTTTAC+AGG | + | chr6_4:34552915-34552934 | Msa0986360:intron | 30.0% |
| GAGCAAAATTTAACCTGTAA+AGG | - | chr6_4:34553052-34553071 | None:intergenic | 30.0% | |
| GAGCAAAATTTAACCTGTAA+AGG | + | chr6_4:34553052-34553071 | Msa0986360:CDS | 30.0% | |
| GTGTGCTTTCTTAATTGAGA+AGG | + | chr6_4:34552248-34552267 | Msa0986360:CDS | 35.0% | |
| TGTCTGTGTATAGTATGCTA+AGG | + | chr6_4:34552670-34552689 | Msa0986360:intron | 35.0% | |
| GTCTGTGTATAGTATGCTAA+GGG | + | chr6_4:34552671-34552690 | Msa0986360:intron | 35.0% | |
| TCAGGGATATAAACTTGACA+TGG | - | chr6_4:34552755-34552774 | None:intergenic | 35.0% | |
| CCCTGATTAATGTGTTATCT+TGG | + | chr6_4:34552769-34552788 | Msa0986360:intron | 35.0% | |
| !! | TTAGCCTTGTTTGACATGAT+TGG | + | chr6_4:34552891-34552910 | Msa0986360:intron | 35.0% |
| ATGAAACTTTGCCACCAAAT+TGG | + | chr6_4:34552983-34553002 | Msa0986360:CDS | 35.0% | |
| ATGAAACTTTGCCACCAATT+TGG | - | chr6_4:34553000-34553019 | None:intergenic | 35.0% | |
| GTGTGCTTTCTTAATTGAGA+AGG | + | chr6_4:34552248-34552267 | Msa0986360:CDS | 35.0% | |
| TGTCTGTGTATAGTATGCTA+AGG | + | chr6_4:34552670-34552689 | Msa0986360:intron | 35.0% | |
| GTCTGTGTATAGTATGCTAA+GGG | + | chr6_4:34552671-34552690 | Msa0986360:intron | 35.0% | |
| TCAGGGATATAAACTTGACA+TGG | - | chr6_4:34552755-34552774 | None:intergenic | 35.0% | |
| CCCTGATTAATGTGTTATCT+TGG | + | chr6_4:34552769-34552788 | Msa0986360:intron | 35.0% | |
| !! | TTAGCCTTGTTTGACATGAT+TGG | + | chr6_4:34552891-34552910 | Msa0986360:intron | 35.0% |
| ATGAAACTTTGCCACCAAAT+TGG | + | chr6_4:34552983-34553002 | Msa0986360:CDS | 35.0% | |
| ATGAAACTTTGCCACCAATT+TGG | - | chr6_4:34553000-34553019 | None:intergenic | 35.0% | |
| TACAATGGCTTAAACACAGC+AGG | - | chr6_4:34552557-34552576 | None:intergenic | 40.0% | |
| CTGTGTTTAAGCCATTGTAG+CGG | + | chr6_4:34552558-34552577 | Msa0986360:intron | 40.0% | |
| TTCTTCATAAGCCGCTACAA+TGG | - | chr6_4:34552572-34552591 | None:intergenic | 40.0% | |
| TGTGTATAGTATGCTAAGGG+TGG | + | chr6_4:34552674-34552693 | Msa0986360:intron | 40.0% | |
| TGGACCAATCATGTCAAACA+AGG | - | chr6_4:34552898-34552917 | None:intergenic | 40.0% | |
| AAACTTTGCCACCAAATTGG+TGG | + | chr6_4:34552986-34553005 | Msa0986360:CDS | 40.0% | |
| AAACTTTGCCACCAATTTGG+TGG | - | chr6_4:34552997-34553016 | None:intergenic | 40.0% | |
| TACAATGGCTTAAACACAGC+AGG | - | chr6_4:34552557-34552576 | None:intergenic | 40.0% | |
| CTGTGTTTAAGCCATTGTAG+CGG | + | chr6_4:34552558-34552577 | Msa0986360:intron | 40.0% | |
| TTCTTCATAAGCCGCTACAA+TGG | - | chr6_4:34552572-34552591 | None:intergenic | 40.0% | |
| TGTGTATAGTATGCTAAGGG+TGG | + | chr6_4:34552674-34552693 | Msa0986360:intron | 40.0% | |
| TGGACCAATCATGTCAAACA+AGG | - | chr6_4:34552898-34552917 | None:intergenic | 40.0% | |
| AAACTTTGCCACCAAATTGG+TGG | + | chr6_4:34552986-34553005 | Msa0986360:CDS | 40.0% | |
| AAACTTTGCCACCAATTTGG+TGG | - | chr6_4:34552997-34553016 | None:intergenic | 40.0% | |
| ACACACCCTTTGATCATCTG+CGG | - | chr6_4:34552232-34552251 | None:intergenic | 45.0% | |
| CATTGAGTAAGCTTCCCACT+GGG | + | chr6_4:34552271-34552290 | Msa0986360:CDS | 45.0% | |
| ATTGAGTAAGCTTCCCACTG+GGG | + | chr6_4:34552272-34552291 | Msa0986360:CDS | 45.0% | |
| ACTATTTGCTCTTCCCCAGT+GGG | - | chr6_4:34552288-34552307 | None:intergenic | 45.0% | |
| AACTATTTGCTCTTCCCCAG+TGG | - | chr6_4:34552289-34552308 | None:intergenic | 45.0% | |
| CTCTGCAGAAACTCTCAAGA+AGG | + | chr6_4:34552948-34552967 | Msa0986360:intron | 45.0% | |
| CTCTGCAGAAACTCTCAAGA+AGG | - | chr6_4:34552948-34552967 | None:intergenic | 45.0% | |
| ACACACCCTTTGATCATCTG+CGG | - | chr6_4:34552232-34552251 | None:intergenic | 45.0% | |
| CATTGAGTAAGCTTCCCACT+GGG | + | chr6_4:34552271-34552290 | Msa0986360:CDS | 45.0% | |
| ATTGAGTAAGCTTCCCACTG+GGG | + | chr6_4:34552272-34552291 | Msa0986360:CDS | 45.0% | |
| ACTATTTGCTCTTCCCCAGT+GGG | - | chr6_4:34552288-34552307 | None:intergenic | 45.0% | |
| AACTATTTGCTCTTCCCCAG+TGG | - | chr6_4:34552289-34552308 | None:intergenic | 45.0% | |
| CTCTGCAGAAACTCTCAAGA+AGG | + | chr6_4:34552948-34552967 | Msa0986360:intron | 45.0% | |
| CTCTGCAGAAACTCTCAAGA+AGG | - | chr6_4:34552948-34552967 | None:intergenic | 45.0% | |
| ACACCCTTTGATCATCTGCG+GGG | - | chr6_4:34552230-34552249 | None:intergenic | 50.0% | |
| CACACCCTTTGATCATCTGC+GGG | - | chr6_4:34552231-34552250 | None:intergenic | 50.0% | |
| GCATTGAGTAAGCTTCCCAC+TGG | + | chr6_4:34552270-34552289 | Msa0986360:CDS | 50.0% | |
| ACACCCTTTGATCATCTGCG+GGG | - | chr6_4:34552230-34552249 | None:intergenic | 50.0% | |
| CACACCCTTTGATCATCTGC+GGG | - | chr6_4:34552231-34552250 | None:intergenic | 50.0% | |
| GCATTGAGTAAGCTTCCCAC+TGG | + | chr6_4:34552270-34552289 | Msa0986360:CDS | 50.0% | |
| AGGTCCCCGCAGATGATCAA+AGG | + | chr6_4:34552223-34552242 | Msa0986360:CDS | 55.0% | |
| GGTCCCCGCAGATGATCAAA+GGG | + | chr6_4:34552224-34552243 | Msa0986360:CDS | 55.0% | |
| AGGTCCCCGCAGATGATCAA+AGG | + | chr6_4:34552223-34552242 | Msa0986360:CDS | 55.0% | |
| GGTCCCCGCAGATGATCAAA+GGG | + | chr6_4:34552224-34552243 | Msa0986360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 34552210 | 34553081 | 34552210 | ID=Msa0986360;Name=Msa0986360 |
| chr6_4 | mRNA | 34552210 | 34553081 | 34552210 | ID=Msa0986360-mRNA-1;Parent=Msa0986360;Name=Msa0986360-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0|0.5|2|0|95 |
| chr6_4 | exon | 34552210 | 34552371 | 34552210 | ID=Msa0986360-mRNA-1:exon:8917;Parent=Msa0986360-mRNA-1 |
| chr6_4 | exon | 34552956 | 34553081 | 34552956 | ID=Msa0986360-mRNA-1:exon:8918;Parent=Msa0986360-mRNA-1 |
| chr6_4 | CDS | 34552210 | 34552371 | 34552210 | ID=Msa0986360-mRNA-1:cds;Parent=Msa0986360-mRNA-1 |
| chr6_4 | CDS | 34552956 | 34553081 | 34552956 | ID=Msa0986360-mRNA-1:cds;Parent=Msa0986360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
