Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402790 | XP_039689506.1 | 79.032 | 248 | 21 | 2 | 1 | 217 | 54 | 301 | 4.05e-134 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402790 | G7IVL5 | 74.877 | 203 | 21 | 2 | 9 | 181 | 14 | 216 | 1.49e-98 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa1402790 | 0.812991 | 3.208516e-51 | -8.615850e-47 |
| Msa0016580 | Msa1402790 | 0.831475 | 1.634680e-55 | -8.615850e-47 |
| Msa0062860 | Msa1402790 | 0.816366 | 5.740169e-52 | -8.615850e-47 |
| Msa0102070 | Msa1402790 | 0.826029 | 3.394924e-54 | -8.615850e-47 |
| Msa0110270 | Msa1402790 | 0.807914 | 4.004160e-50 | -8.615850e-47 |
| Msa1344520 | Msa1402790 | 0.836004 | 1.206204e-56 | -8.615850e-47 |
| Msa1366810 | Msa1402790 | 0.822353 | 2.479010e-53 | -8.615850e-47 |
| Msa1369430 | Msa1402790 | 0.821617 | 3.671321e-53 | -8.615850e-47 |
| Msa1386330 | Msa1402790 | 0.815874 | 7.393626e-52 | -8.615850e-47 |
| Msa1400720 | Msa1402790 | 0.812848 | 3.448243e-51 | -8.615850e-47 |
| Msa1402770 | Msa1402790 | 0.816756 | 4.693606e-52 | -8.615850e-47 |
| Msa1402790 | Msa1404000 | 0.848370 | 6.400330e-60 | -8.615850e-47 |
| Msa1402790 | Msa1408780 | 0.801065 | 1.073312e-48 | -8.615850e-47 |
| Msa1402790 | Msa1410680 | 0.803862 | 2.846198e-49 | -8.615850e-47 |
| Msa1402790 | Msa1415310 | 0.821150 | 4.704174e-53 | -8.615850e-47 |
| Msa1402790 | Msa1422180 | 0.842882 | 1.971016e-58 | -8.615850e-47 |
| Msa1402790 | Msa1433120 | 0.834912 | 2.278420e-56 | -8.615850e-47 |
| Msa0604350 | Msa1402790 | 0.817751 | 2.802636e-52 | -8.615850e-47 |
| Msa0610800 | Msa1402790 | 0.804097 | 2.543798e-49 | -8.615850e-47 |
| Msa0636170 | Msa1402790 | 0.817344 | 3.463044e-52 | -8.615850e-47 |
| Msa0639610 | Msa1402790 | 0.861489 | 9.901391e-64 | -8.615850e-47 |
| Msa0676080 | Msa1402790 | 0.822248 | 2.622459e-53 | -8.615850e-47 |
| Msa0701010 | Msa1402790 | 0.811010 | 8.671480e-51 | -8.615850e-47 |
| Msa0703120 | Msa1402790 | 0.805397 | 1.361556e-49 | -8.615850e-47 |
| Msa0705970 | Msa1402790 | 0.805968 | 1.033146e-49 | -8.615850e-47 |
| Msa0725850 | Msa1402790 | 0.818156 | 2.270636e-52 | -8.615850e-47 |
| Msa0726140 | Msa1402790 | 0.847148 | 1.388615e-59 | -8.615850e-47 |
| Msa0729800 | Msa1402790 | 0.835710 | 1.431886e-56 | -8.615850e-47 |
| Msa0731550 | Msa1402790 | 0.803953 | 2.724843e-49 | -8.615850e-47 |
| Msa0732710 | Msa1402790 | 0.803322 | 3.683661e-49 | -8.615850e-47 |
| Msa0733290 | Msa1402790 | 0.801665 | 8.088317e-49 | -8.615850e-47 |
| Msa0735080 | Msa1402790 | 0.811043 | 8.528770e-51 | -8.615850e-47 |
| Msa0738500 | Msa1402790 | 0.801054 | 1.079109e-48 | -8.615850e-47 |
| Msa0743810 | Msa1402790 | 0.861354 | 1.088582e-63 | -8.615850e-47 |
| Msa0745060 | Msa1402790 | 0.830342 | 3.100630e-55 | -8.615850e-47 |
| Msa0766630 | Msa1402790 | 0.813665 | 2.281684e-51 | -8.615850e-47 |
| Msa0768290 | Msa1402790 | 0.811696 | 6.153578e-51 | -8.615850e-47 |
| Msa0768370 | Msa1402790 | 0.840275 | 9.589286e-58 | -8.615850e-47 |
| Msa0775300 | Msa1402790 | 0.836056 | 1.170371e-56 | -8.615850e-47 |
| Msa0777870 | Msa1402790 | 0.813550 | 2.418139e-51 | -8.615850e-47 |
| Msa0783160 | Msa1402790 | 0.868649 | 5.583202e-66 | -8.615850e-47 |
| Msa0784290 | Msa1402790 | 0.812448 | 4.217562e-51 | -8.615850e-47 |
| Msa0784300 | Msa1402790 | 0.814215 | 1.725598e-51 | -8.615850e-47 |
| Msa0787600 | Msa1402790 | 0.808742 | 2.667285e-50 | -8.615850e-47 |
| Msa0789250 | Msa1402790 | 0.800045 | 1.732671e-48 | -8.615850e-47 |
| Msa0808010 | Msa1402790 | 0.818946 | 1.502881e-52 | -8.615850e-47 |
| Msa0808020 | Msa1402790 | 0.814931 | 1.198189e-51 | -8.615850e-47 |
| Msa0811080 | Msa1402790 | 0.808157 | 3.555993e-50 | -8.615850e-47 |
| Msa0811270 | Msa1402790 | 0.817505 | 3.185250e-52 | -8.615850e-47 |
| Msa0824590 | Msa1402790 | 0.815920 | 7.220432e-52 | -8.615850e-47 |
| Msa0824600 | Msa1402790 | 0.842523 | 2.455344e-58 | -8.615850e-47 |
| Msa0825860 | Msa1402790 | 0.839055 | 1.992332e-57 | -8.615850e-47 |
| Msa0833290 | Msa1402790 | 0.806610 | 7.565936e-50 | -8.615850e-47 |
| Msa0123810 | Msa1402790 | 0.857596 | 1.465446e-62 | -8.615850e-47 |
| Msa0128940 | Msa1402790 | 0.802678 | 5.006580e-49 | -8.615850e-47 |
| Msa0142220 | Msa1402790 | 0.838673 | 2.501194e-57 | -8.615850e-47 |
| Msa0153910 | Msa1402790 | 0.825172 | 5.418620e-54 | -8.615850e-47 |
| Msa0178960 | Msa1402790 | 0.801050 | 1.081232e-48 | -8.615850e-47 |
| Msa0188460 | Msa1402790 | 0.825982 | 3.483313e-54 | -8.615850e-47 |
| Msa0227480 | Msa1402790 | 0.832772 | 7.813365e-56 | -8.615850e-47 |
| Msa0231000 | Msa1402790 | 0.824203 | 9.168140e-54 | -8.615850e-47 |
| Msa0232850 | Msa1402790 | 0.852662 | 3.984405e-61 | -8.615850e-47 |
| Msa1230430 | Msa1402790 | 0.855723 | 5.209726e-62 | -8.615850e-47 |
| Msa1244250 | Msa1402790 | 0.804414 | 2.185618e-49 | -8.615850e-47 |
| Msa1246880 | Msa1402790 | 0.823861 | 1.102861e-53 | -8.615850e-47 |
| Msa1248310 | Msa1402790 | 0.809702 | 1.660158e-50 | -8.615850e-47 |
| Msa1249490 | Msa1402790 | 0.835221 | 1.903500e-56 | -8.615850e-47 |
| Msa1269670 | Msa1402790 | 0.824388 | 8.295032e-54 | -8.615850e-47 |
| Msa1270230 | Msa1402790 | 0.841172 | 5.583468e-58 | -8.615850e-47 |
| Msa1270240 | Msa1402790 | 0.825738 | 3.978811e-54 | -8.615850e-47 |
| Msa1270270 | Msa1402790 | 0.826877 | 2.131116e-54 | -8.615850e-47 |
| Msa1273230 | Msa1402790 | 0.852667 | 3.972805e-61 | -8.615850e-47 |
| Msa1276890 | Msa1402790 | 0.801612 | 8.293877e-49 | -8.615850e-47 |
| Msa1283330 | Msa1402790 | 0.854907 | 9.002880e-62 | -8.615850e-47 |
| Msa1284680 | Msa1402790 | 0.818424 | 1.974406e-52 | -8.615850e-47 |
| Msa1285930 | Msa1402790 | 0.851352 | 9.387780e-61 | -8.615850e-47 |
| Msa1287800 | Msa1402790 | 0.833309 | 5.743252e-56 | -8.615850e-47 |
| Msa1287810 | Msa1402790 | 0.852218 | 5.331104e-61 | -8.615850e-47 |
| Msa1289430 | Msa1402790 | 0.805007 | 1.643205e-49 | -8.615850e-47 |
| Msa1297210 | Msa1402790 | 0.808295 | 3.321726e-50 | -8.615850e-47 |
| Msa1305480 | Msa1402790 | 0.801965 | 7.019647e-49 | -8.615850e-47 |
| Msa1307890 | Msa1402790 | 0.819638 | 1.045833e-52 | -8.615850e-47 |
| Msa1310120 | Msa1402790 | 0.817567 | 3.084777e-52 | -8.615850e-47 |
| Msa1340590 | Msa1402790 | 0.800778 | 1.228637e-48 | -8.615850e-47 |
| Msa0384800 | Msa1402790 | 0.844864 | 5.803679e-59 | -8.615850e-47 |
| Msa0384890 | Msa1402790 | 0.828302 | 9.695549e-55 | -8.615850e-47 |
| Msa0407750 | Msa1402790 | 0.807806 | 4.222452e-50 | -8.615850e-47 |
| Msa0414410 | Msa1402790 | 0.820603 | 6.286381e-53 | -8.615850e-47 |
| Msa0414420 | Msa1402790 | 0.839154 | 1.877799e-57 | -8.615850e-47 |
| Msa0424320 | Msa1402790 | 0.802734 | 4.873618e-49 | -8.615850e-47 |
| Msa0435230 | Msa1402790 | 0.810869 | 9.300909e-51 | -8.615850e-47 |
| Msa0436780 | Msa1402790 | 0.824975 | 6.030459e-54 | -8.615850e-47 |
| Msa0436800 | Msa1402790 | 0.820751 | 5.813321e-53 | -8.615850e-47 |
| Msa0444130 | Msa1402790 | 0.825127 | 5.551867e-54 | -8.615850e-47 |
| Msa0450000 | Msa1402790 | 0.874017 | 9.379955e-68 | -8.615850e-47 |
| Msa0452900 | Msa1402790 | 0.858919 | 5.918340e-63 | -8.615850e-47 |
| Msa0453120 | Msa1402790 | 0.837273 | 5.728251e-57 | -8.615850e-47 |
| Msa0479340 | Msa1402790 | 0.834597 | 2.734623e-56 | -8.615850e-47 |
| Msa0979850 | Msa1402790 | 0.806234 | 9.080534e-50 | -8.615850e-47 |
| Msa0980090 | Msa1402790 | 0.808153 | 3.561953e-50 | -8.615850e-47 |
| Msa0981370 | Msa1402790 | 0.807052 | 6.103119e-50 | -8.615850e-47 |
| Msa0986360 | Msa1402790 | 0.845953 | 2.943579e-59 | -8.615850e-47 |
| Msa0989060 | Msa1402790 | 0.880027 | 7.694595e-70 | -8.615850e-47 |
| Msa0998690 | Msa1402790 | 0.832648 | 8.383887e-56 | -8.615850e-47 |
| Msa1014540 | Msa1402790 | 0.807898 | 4.035477e-50 | -8.615850e-47 |
| Msa1016280 | Msa1402790 | 0.839425 | 1.597275e-57 | -8.615850e-47 |
| Msa1023010 | Msa1402790 | 0.815415 | 9.354787e-52 | -8.615850e-47 |
| Msa1025360 | Msa1402790 | 0.852527 | 4.354573e-61 | -8.615850e-47 |
| Msa1025370 | Msa1402790 | 0.841287 | 5.208273e-58 | -8.615850e-47 |
| Msa1044830 | Msa1402790 | 0.844273 | 8.375317e-59 | -8.615850e-47 |
| Msa1044840 | Msa1402790 | 0.853181 | 2.831706e-61 | -8.615850e-47 |
| Msa1060840 | Msa1402790 | 0.845818 | 3.204168e-59 | -8.615850e-47 |
| Msa1085740 | Msa1402790 | 0.813720 | 2.218911e-51 | -8.615850e-47 |
| Msa1092990 | Msa1402790 | 0.846789 | 1.741457e-59 | -8.615850e-47 |
| Msa1099970 | Msa1402790 | 0.839666 | 1.382281e-57 | -8.615850e-47 |
| Msa1100980 | Msa1402790 | 0.848772 | 4.953311e-60 | -8.615850e-47 |
| Msa0247260 | Msa1402790 | 0.802677 | 5.008460e-49 | -8.615850e-47 |
| Msa0251320 | Msa1402790 | 0.821699 | 3.514901e-53 | -8.615850e-47 |
| Msa0256440 | Msa1402790 | 0.811947 | 5.426223e-51 | -8.615850e-47 |
| Msa0267000 | Msa1402790 | 0.836118 | 1.128645e-56 | -8.615850e-47 |
| Msa0267010 | Msa1402790 | 0.848733 | 5.077327e-60 | -8.615850e-47 |
| Msa0270520 | Msa1402790 | 0.857437 | 1.633480e-62 | -8.615850e-47 |
| Msa0285810 | Msa1402790 | 0.818679 | 1.728492e-52 | -8.615850e-47 |
| Msa0305190 | Msa1402790 | 0.808637 | 2.808419e-50 | -8.615850e-47 |
| Msa0306460 | Msa1402790 | 0.819500 | 1.124237e-52 | -8.615850e-47 |
| Msa0311750 | Msa1402790 | 0.803760 | 2.989035e-49 | -8.615850e-47 |
| Msa0337900 | Msa1402790 | 0.812347 | 4.438736e-51 | -8.615850e-47 |
| Msa0342240 | Msa1402790 | 0.833045 | 6.679696e-56 | -8.615850e-47 |
| Msa0349360 | Msa1402790 | 0.820018 | 8.561555e-53 | -8.615850e-47 |
| Msa0360510 | Msa1402790 | 0.839893 | 1.206189e-57 | -8.615850e-47 |
| Msa1109440 | Msa1402790 | 0.837242 | 5.835762e-57 | -8.615850e-47 |
| Msa1114030 | Msa1402790 | 0.811238 | 7.736531e-51 | -8.615850e-47 |
| Msa1121200 | Msa1402790 | 0.814192 | 1.745707e-51 | -8.615850e-47 |
| Msa1121480 | Msa1402790 | 0.805623 | 1.220877e-49 | -8.615850e-47 |
| Msa1121490 | Msa1402790 | 0.808625 | 2.825115e-50 | -8.615850e-47 |
| Msa1135740 | Msa1402790 | 0.827051 | 1.936437e-54 | -8.615850e-47 |
| Msa1136090 | Msa1402790 | 0.855978 | 4.387792e-62 | -8.615850e-47 |
| Msa1139680 | Msa1402790 | 0.836980 | 6.806177e-57 | -8.615850e-47 |
| Msa1146110 | Msa1402790 | 0.812808 | 3.519336e-51 | -8.615850e-47 |
| Msa1149360 | Msa1402790 | 0.833252 | 5.932996e-56 | -8.615850e-47 |
| Msa1150370 | Msa1402790 | 0.819147 | 1.353161e-52 | -8.615850e-47 |
| Msa1156020 | Msa1402790 | 0.811212 | 7.836228e-51 | -8.615850e-47 |
| Msa1182090 | Msa1402790 | 0.850968 | 1.204352e-60 | -8.615850e-47 |
| Msa1184420 | Msa1402790 | 0.800653 | 1.303098e-48 | -8.615850e-47 |
| Msa1187950 | Msa1402790 | 0.824843 | 6.480564e-54 | -8.615850e-47 |
| Msa1192640 | Msa1402790 | 0.829091 | 6.248830e-55 | -8.615850e-47 |
| Msa0493000 | Msa1402790 | 0.840780 | 7.075412e-58 | -8.615850e-47 |
| Msa0502760 | Msa1402790 | 0.802203 | 6.269934e-49 | -8.615850e-47 |
| Msa0506270 | Msa1402790 | 0.824502 | 7.795903e-54 | -8.615850e-47 |
| Msa0516750 | Msa1402790 | 0.801810 | 7.553036e-49 | -8.615850e-47 |
| Msa0534540 | Msa1402790 | 0.805053 | 1.607177e-49 | -8.615850e-47 |
| Msa0545700 | Msa1402790 | 0.811367 | 7.254897e-51 | -8.615850e-47 |
| Msa0564890 | Msa1402790 | 0.841480 | 4.632612e-58 | -8.615850e-47 |
| Msa0598780 | Msa1402790 | 0.815132 | 1.081315e-51 | -8.615850e-47 |
| Msa0845930 | Msa1402790 | 0.800503 | 1.398109e-48 | -8.615850e-47 |
| Msa0846210 | Msa1402790 | 0.810007 | 1.427816e-50 | -8.615850e-47 |
| Msa0846330 | Msa1402790 | 0.815122 | 1.086585e-51 | -8.615850e-47 |
| Msa0846350 | Msa1402790 | 0.840453 | 8.615172e-58 | -8.615850e-47 |
| Msa0848960 | Msa1402790 | 0.814240 | 1.704332e-51 | -8.615850e-47 |
| Msa0854980 | Msa1402790 | 0.835881 | 1.296175e-56 | -8.615850e-47 |
| Msa0858980 | Msa1402790 | 0.826522 | 2.590250e-54 | -8.615850e-47 |
| Msa0864070 | Msa1402790 | 0.812843 | 3.456320e-51 | -8.615850e-47 |
| Msa0865320 | Msa1402790 | 0.819352 | 1.214980e-52 | -8.615850e-47 |
| Msa0872230 | Msa1402790 | 0.818604 | 1.797244e-52 | -8.615850e-47 |
| Msa0877250 | Msa1402790 | 0.845478 | 3.962010e-59 | -8.615850e-47 |
| Msa0884150 | Msa1402790 | 0.800997 | 1.108167e-48 | -8.615850e-47 |
| Msa0885280 | Msa1402790 | 0.822773 | 1.979696e-53 | -8.615850e-47 |
| Msa0885290 | Msa1402790 | 0.822787 | 1.964793e-53 | -8.615850e-47 |
| Msa0888370 | Msa1402790 | 0.821394 | 4.134043e-53 | -8.615850e-47 |
| Msa0888420 | Msa1402790 | 0.806013 | 1.010698e-49 | -8.615850e-47 |
| Msa0896080 | Msa1402790 | 0.802026 | 6.820705e-49 | -8.615850e-47 |
| Msa0897880 | Msa1402790 | 0.811975 | 5.348598e-51 | -8.615850e-47 |
| Msa0899430 | Msa1402790 | 0.854642 | 1.074334e-61 | -8.615850e-47 |
| Msa0899450 | Msa1402790 | 0.836921 | 7.048319e-57 | -8.615850e-47 |
| Msa0907260 | Msa1402790 | 0.861667 | 8.733714e-64 | -8.615850e-47 |
| Msa0914760 | Msa1402790 | 0.826263 | 2.985374e-54 | -8.615850e-47 |
| Msa0924050 | Msa1402790 | 0.828054 | 1.112567e-54 | -8.615850e-47 |
| Msa0927380 | Msa1402790 | 0.818972 | 1.482886e-52 | -8.615850e-47 |
| Msa0952720 | Msa1402790 | 0.816050 | 6.754088e-52 | -8.615850e-47 |
| Msa0954910 | Msa1402790 | 0.841081 | 5.900307e-58 | -8.615850e-47 |
| Msa0956270 | Msa1402790 | 0.853360 | 2.515879e-61 | -8.615850e-47 |
| Msa0957860 | Msa1402790 | 0.812463 | 4.186131e-51 | -8.615850e-47 |
| Msa0957960 | Msa1402790 | 0.813583 | 2.378566e-51 | -8.615850e-47 |
| Msa0958550 | Msa1402790 | 0.859881 | 3.043222e-63 | -8.615850e-47 |
| Msa0976670 | Msa1402790 | 0.828855 | 7.127188e-55 | -8.615850e-47 |
| Msa0979410 | Msa1402790 | 0.804574 | 2.023586e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1402790 | MtrunA17_Chr8g0355501 | 68.950 | 219 | 53 | 4 | 1 | 217 | 77 | 282 | 8.26e-95 | 290 |
| Msa1402790 | MtrunA17_Chr4g0019921 | 79.355 | 155 | 29 | 2 | 1 | 153 | 1 | 154 | 6.59e-81 | 253 |
| Msa1402790 | MtrunA17_Chr4g0019921 | 93.902 | 82 | 5 | 0 | 136 | 217 | 201 | 282 | 4.83e-48 | 167 |
| Msa1402790 | MtrunA17_Chr8g0355431 | 78.676 | 136 | 27 | 1 | 1 | 134 | 77 | 212 | 4.61e-75 | 229 |
| Msa1402790 | MtrunA17_Chr2g0332321 | 80.882 | 136 | 24 | 1 | 1 | 134 | 170 | 305 | 2.96e-70 | 232 |
| Msa1402790 | MtrunA17_Chr2g0332321 | 87.500 | 80 | 10 | 0 | 136 | 215 | 370 | 449 | 2.79e-42 | 154 |
| Msa1402790 | MtrunA17_Chr3g0087111 | 74.265 | 136 | 33 | 1 | 1 | 134 | 160 | 295 | 1.20e-68 | 214 |
| Msa1402790 | MtrunA17_Chr6g0471851 | 72.059 | 136 | 36 | 1 | 1 | 134 | 25 | 160 | 1.11e-67 | 208 |
| Msa1402790 | MtrunA17_Chr3g0087121 | 72.794 | 136 | 35 | 1 | 1 | 134 | 25 | 160 | 5.10e-67 | 209 |
| Msa1402790 | MtrunA17_Chr3g0087121 | 72.340 | 47 | 13 | 0 | 136 | 182 | 222 | 268 | 2.47e-15 | 73.9 |
| Msa1402790 | MtrunA17_Chr6g0467971 | 68.382 | 136 | 41 | 1 | 1 | 134 | 69 | 204 | 2.56e-64 | 201 |
| Msa1402790 | MtrunA17_Chr6g0469401 | 85.455 | 110 | 14 | 1 | 27 | 134 | 1 | 110 | 3.89e-63 | 194 |
| Msa1402790 | MtrunA17_Chr4g0074241 | 76.724 | 116 | 25 | 1 | 1 | 114 | 128 | 243 | 6.25e-60 | 190 |
| Msa1402790 | MtrunA17_Chr8g0358561 | 92.405 | 79 | 6 | 0 | 136 | 214 | 52 | 130 | 1.92e-47 | 157 |
| Msa1402790 | MtrunA17_Chr4g0019891 | 93.902 | 82 | 4 | 1 | 136 | 217 | 64 | 144 | 6.03e-47 | 162 |
| Msa1402790 | MtrunA17_Chr8g0358571 | 74.444 | 90 | 21 | 1 | 1 | 88 | 109 | 198 | 9.11e-44 | 147 |
| Msa1402790 | MtrunA17_Chr6g0467981 | 71.831 | 71 | 20 | 0 | 147 | 217 | 1 | 71 | 1.29e-30 | 109 |
| Msa1402790 | MtrunA17_Chr6g0471841 | 70.270 | 37 | 11 | 0 | 181 | 217 | 7 | 43 | 3.77e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTATTCTCCTCGGTTTC+AGG | 0.131386 | tig0022921:-25041 | None:intergenic |
| GAGGGAAATGTTGGAACTTC+TGG | 0.223270 | tig0022921:+24958 | Msa1402790:CDS |
| TTGGTTGTGTTTGTTTCTTT+TGG | 0.237371 | tig0022921:-24996 | None:intergenic |
| AAGAGTTCAAGTAATGAAAA+AGG | 0.243861 | tig0022921:+25059 | Msa1402790:CDS |
| GAGAGATTGAGGAAAGAATT+AGG | 0.296207 | tig0022921:+23528 | Msa1402790:CDS |
| GCACCCTTCACCCACGCTTT+TGG | 0.299769 | tig0022921:-23621 | None:intergenic |
| ATCATTGTAGGTCTTGTATA+CGG | 0.343818 | tig0022921:+24893 | Msa1402790:CDS |
| CACTTCAATCGGGTTGTCCT+TGG | 0.348573 | tig0022921:-25015 | None:intergenic |
| CATGGACCTTCTGAAGGTCT+TGG | 0.357266 | tig0022921:-24116 | None:intergenic |
| CCACAATTTCTTTGTGGATC+GGG | 0.364347 | tig0022921:+23356 | Msa1402790:CDS |
| GTTTCAGGTTGCACTTCAAT+CGG | 0.380872 | tig0022921:-25026 | None:intergenic |
| CACTACAACCGCGGAAACCT+TGG | 0.392087 | tig0022921:+24921 | Msa1402790:CDS |
| AGATACCTGTCCACTCTCTA+AGG | 0.401736 | tig0022921:+24227 | Msa1402790:CDS |
| CTCAGCTATTCTTCTTTCCA+AGG | 0.421507 | tig0022921:-24938 | None:intergenic |
| CTTCTAATATGTGAGCATAT+TGG | 0.428949 | tig0022921:-23701 | None:intergenic |
| AGATGCATCTTAATCATTGT+AGG | 0.431448 | tig0022921:+24881 | Msa1402790:CDS |
| CTTCTATTATCTTCAGTCTC+AGG | 0.438068 | tig0022921:-25092 | None:intergenic |
| TTAATCTGCTTCCCCGCCAT+TGG | 0.449695 | tig0022921:-23477 | None:intergenic |
| AAAAGTCCACAATTTCTTTG+TGG | 0.452855 | tig0022921:+23350 | Msa1402790:CDS |
| AGGGAAATGTTGGAACTTCT+GGG | 0.461640 | tig0022921:+24959 | Msa1402790:CDS |
| TCCACAATTTCTTTGTGGAT+CGG | 0.463542 | tig0022921:+23355 | Msa1402790:CDS |
| AGAATAGCTGAGGGAAATGT+TGG | 0.469982 | tig0022921:+24949 | Msa1402790:CDS |
| GTGTATGAGCTTCCAATGGC+GGG | 0.473643 | tig0022921:+23465 | Msa1402790:CDS |
| GAATGTTGCATATCTGCAAC+TGG | 0.475324 | tig0022921:+23325 | None:intergenic |
| TTCGTCGGTGCTGTATAGTC+TGG | 0.489909 | tig0022921:-24178 | None:intergenic |
| TGTACATCATCCTCTTTCAA+TGG | 0.490209 | tig0022921:-23438 | None:intergenic |
| GTCCATGCTCGAGTCTCATA+AGG | 0.492840 | tig0022921:-24140 | None:intergenic |
| AGATACAAAGCTACTATTAG+TGG | 0.497139 | tig0022921:-23676 | None:intergenic |
| TCGAGCATGGACTGACGGAC+GGG | 0.502838 | tig0022921:+24151 | Msa1402790:CDS |
| GATACAAAGCTACTATTAGT+GGG | 0.506158 | tig0022921:-23675 | None:intergenic |
| TTTCAGGTTGCACTTCAATC+GGG | 0.508919 | tig0022921:-25025 | None:intergenic |
| ATTGAGGAAAGAATTAGGAC+TGG | 0.513989 | tig0022921:+23533 | Msa1402790:CDS |
| AGGAAAGAATTAGGACTGGA+TGG | 0.519085 | tig0022921:+23537 | Msa1402790:CDS |
| ACTTGAACTCTTATTCTCCT+CGG | 0.523827 | tig0022921:-25048 | None:intergenic |
| CGATGTACTTCCATTGAAAG+AGG | 0.524387 | tig0022921:+23428 | Msa1402790:CDS |
| ATGCAGCAATAGAGAGATTG+AGG | 0.524662 | tig0022921:+23517 | Msa1402790:CDS |
| TTATAAGATGATACCCCAGC+TGG | 0.526208 | tig0022921:-23726 | None:intergenic |
| CCCGATCCACAAAGAAATTG+TGG | 0.539138 | tig0022921:-23356 | None:intergenic |
| CACATATTAGAAGATCCAGC+TGG | 0.541125 | tig0022921:+23711 | Msa1402790:CDS |
| GAAAGAGGATGATGTACATA+GGG | 0.544704 | tig0022921:+23443 | Msa1402790:CDS |
| TGAAAGAGGATGATGTACAT+AGG | 0.546471 | tig0022921:+23442 | Msa1402790:CDS |
| GAAACCAAAAGCGTGGGTGA+AGG | 0.554072 | tig0022921:+23617 | Msa1402790:CDS |
| TGAAGTGCAACCTGAAACCG+AGG | 0.557192 | tig0022921:+25031 | Msa1402790:CDS |
| AAACCAAAAGCGTGGGTGAA+GGG | 0.563573 | tig0022921:+23618 | Msa1402790:CDS |
| CTCGAGCATGGACTGACGGA+CGG | 0.567793 | tig0022921:+24150 | Msa1402790:CDS |
| GAGACTCGAGCATGGACTGA+CGG | 0.577591 | tig0022921:+24146 | Msa1402790:CDS |
| TAAGGTCATGGACCTTCTGA+AGG | 0.579674 | tig0022921:-24122 | None:intergenic |
| TCTTCTTTCCAAGGTTTCCG+CGG | 0.585458 | tig0022921:-24929 | None:intergenic |
| ACATATTAGAAGATCCAGCT+GGG | 0.590011 | tig0022921:+23712 | Msa1402790:CDS |
| CACTAGAGAAACCAAAAGCG+TGG | 0.593065 | tig0022921:+23610 | Msa1402790:CDS |
| ACTTTGAGAAAGAGCACATG+TGG | 0.594422 | tig0022921:+23388 | Msa1402790:CDS |
| GCTCGAGTCTCATAAGGTCA+TGG | 0.597826 | tig0022921:-24134 | None:intergenic |
| TCTCACCTTAGAGAGTGGAC+AGG | 0.598675 | tig0022921:-24232 | None:intergenic |
| GACCTTATGAGACTCGAGCA+TGG | 0.604934 | tig0022921:+24138 | Msa1402790:CDS |
| CAATACAAGCGGACCTTCGT+CGG | 0.607737 | tig0022921:-24193 | None:intergenic |
| CGAGCATGGACTGACGGACG+GGG | 0.619226 | tig0022921:+24152 | Msa1402790:CDS |
| CTTGGAAAGAAGAATAGCTG+AGG | 0.620235 | tig0022921:+24939 | Msa1402790:CDS |
| CTCTTTCAATGGAAGTACAT+CGG | 0.620515 | tig0022921:-23427 | None:intergenic |
| GCATCAAAACACAATACAAG+CGG | 0.625263 | tig0022921:-24204 | None:intergenic |
| GGTGTATGAGCTTCCAATGG+CGG | 0.625971 | tig0022921:+23464 | Msa1402790:CDS |
| TTGGAAAGAAGAATAGCTGA+GGG | 0.649019 | tig0022921:+24940 | Msa1402790:CDS |
| GGCAAACCAAGACCTTCAGA+AGG | 0.649702 | tig0022921:+24110 | Msa1402790:CDS |
| TGTATGAGCTTCCAATGGCG+GGG | 0.654369 | tig0022921:+23466 | Msa1402790:CDS |
| TAGGGTGTATGAGCTTCCAA+TGG | 0.657008 | tig0022921:+23461 | Msa1402790:CDS |
| ACTAGAGAAACCAAAAGCGT+GGG | 0.657073 | tig0022921:+23611 | Msa1402790:CDS |
| AGACTATACAGCACCGACGA+AGG | 0.657948 | tig0022921:+24180 | Msa1402790:CDS |
| AAAAGAAACAAACACAACCA+AGG | 0.660541 | tig0022921:+24998 | Msa1402790:CDS |
| ACGGATCTACACTACAACCG+CGG | 0.689418 | tig0022921:+24912 | Msa1402790:CDS |
| ATACAAAGCTACTATTAGTG+GGG | 0.694074 | tig0022921:-23674 | None:intergenic |
| CATATTAGAAGATCCAGCTG+GGG | 0.704362 | tig0022921:+23713 | Msa1402790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTACATGAAGAAAA+TGG | + | tig0022921:24020-24039 | Msa1402790:intron | 15.0% |
| !! | ATTAATTACATGAAGAAAAT+GGG | + | tig0022921:24021-24040 | Msa1402790:intron | 15.0% |
| !! | AATCATTAGTATTGTTAAAT+CGG | + | tig0022921:24772-24791 | Msa1402790:intron | 15.0% |
| !! | ATAAAAACACAATATTATGT+TGG | - | tig0022921:24813-24832 | None:intergenic | 15.0% |
| !!! | AACATAATATTGTGTTTTTA+TGG | + | tig0022921:24812-24831 | Msa1402790:intron | 15.0% |
| !! | TATTAATTACATGAAGAAAA+TGG | + | tig0022921:24020-24039 | Msa1402790:intron | 15.0% |
| !! | ATTAATTACATGAAGAAAAT+GGG | + | tig0022921:24021-24040 | Msa1402790:intron | 15.0% |
| !! | AATCATTAGTATTGTTAAAT+CGG | + | tig0022921:24772-24791 | Msa1402790:intron | 15.0% |
| !! | ATAAAAACACAATATTATGT+TGG | - | tig0022921:24813-24832 | None:intergenic | 15.0% |
| !!! | AACATAATATTGTGTTTTTA+TGG | + | tig0022921:24812-24831 | Msa1402790:intron | 15.0% |
| !! | TATATATAATGATCACCATT+AGG | - | tig0022921:23833-23852 | None:intergenic | 20.0% |
| !!! | GTATTTTTAAAACAACTAAG+AGG | + | tig0022921:23972-23991 | Msa1402790:intron | 20.0% |
| !! | TTAATTACATGAAGAAAATG+GGG | + | tig0022921:24022-24041 | Msa1402790:intron | 20.0% |
| !! | CTACTATTTATGCAATATTA+TGG | + | tig0022921:24271-24290 | Msa1402790:intron | 20.0% |
| !! | TAGATTAAATGATTTCAAGA+TGG | + | tig0022921:24309-24328 | Msa1402790:intron | 20.0% |
| !! | TTAAGGAAATAATTTCAGAT+TGG | + | tig0022921:24507-24526 | Msa1402790:intron | 20.0% |
| !! | TATATGATCCTATCAAAATT+TGG | - | tig0022921:24668-24687 | None:intergenic | 20.0% |
| !! | GATTATATAACAATACTACT+GGG | - | tig0022921:24756-24775 | None:intergenic | 20.0% |
| !! | TGATTATATAACAATACTAC+TGG | - | tig0022921:24757-24776 | None:intergenic | 20.0% |
| !!! | TTTTATGTATGTGTACTATT+AGG | - | tig0022921:24848-24867 | None:intergenic | 20.0% |
| !! | TATATATAATGATCACCATT+AGG | - | tig0022921:23833-23852 | None:intergenic | 20.0% |
| !!! | GTATTTTTAAAACAACTAAG+AGG | + | tig0022921:23972-23991 | Msa1402790:intron | 20.0% |
| !! | TTAATTACATGAAGAAAATG+GGG | + | tig0022921:24022-24041 | Msa1402790:intron | 20.0% |
| !! | CTACTATTTATGCAATATTA+TGG | + | tig0022921:24271-24290 | Msa1402790:intron | 20.0% |
| !! | TAGATTAAATGATTTCAAGA+TGG | + | tig0022921:24309-24328 | Msa1402790:intron | 20.0% |
| !! | TTAAGGAAATAATTTCAGAT+TGG | + | tig0022921:24507-24526 | Msa1402790:intron | 20.0% |
| !! | TATATGATCCTATCAAAATT+TGG | - | tig0022921:24668-24687 | None:intergenic | 20.0% |
| !! | GATTATATAACAATACTACT+GGG | - | tig0022921:24756-24775 | None:intergenic | 20.0% |
| !! | TGATTATATAACAATACTAC+TGG | - | tig0022921:24757-24776 | None:intergenic | 20.0% |
| !!! | TTTTATGTATGTGTACTATT+AGG | - | tig0022921:24848-24867 | None:intergenic | 20.0% |
| !! | AAATTATTCTCCTTTTGTGA+AGG | + | tig0022921:23560-23579 | Msa1402790:intron | 25.0% |
| !!! | TTTTTAAAACAACTAAGAGG+TGG | + | tig0022921:23975-23994 | Msa1402790:intron | 25.0% |
| ! | CTATTTATGCAATATTATGG+CGG | + | tig0022921:24274-24293 | Msa1402790:intron | 25.0% |
| ! | TTGAGAGATATAAACTACTA+TGG | - | tig0022921:24355-24374 | None:intergenic | 25.0% |
| ! | TAACTAACAAGTAACAAACA+AGG | - | tig0022921:24533-24552 | None:intergenic | 25.0% |
| !! | CTTAATTTAACTTATACCAG+CGG | - | tig0022921:24607-24626 | None:intergenic | 25.0% |
| ! | CACATACATAAAAAAATTGC+AGG | + | tig0022921:24855-24874 | Msa1402790:intron | 25.0% |
| ! | AAGAGTTCAAGTAATGAAAA+AGG | + | tig0022921:25059-25078 | Msa1402790:CDS | 25.0% |
| ! | AGAGTTCAAGTAATGAAAAA+GGG | + | tig0022921:25060-25079 | Msa1402790:CDS | 25.0% |
| !! | AAATTATTCTCCTTTTGTGA+AGG | + | tig0022921:23560-23579 | Msa1402790:intron | 25.0% |
| !!! | TTTTTAAAACAACTAAGAGG+TGG | + | tig0022921:23975-23994 | Msa1402790:intron | 25.0% |
| ! | CTATTTATGCAATATTATGG+CGG | + | tig0022921:24274-24293 | Msa1402790:intron | 25.0% |
| ! | TTGAGAGATATAAACTACTA+TGG | - | tig0022921:24355-24374 | None:intergenic | 25.0% |
| ! | TAACTAACAAGTAACAAACA+AGG | - | tig0022921:24533-24552 | None:intergenic | 25.0% |
| !! | CTTAATTTAACTTATACCAG+CGG | - | tig0022921:24607-24626 | None:intergenic | 25.0% |
| ! | CACATACATAAAAAAATTGC+AGG | + | tig0022921:24855-24874 | Msa1402790:intron | 25.0% |
| ! | AAGAGTTCAAGTAATGAAAA+AGG | + | tig0022921:25059-25078 | Msa1402790:CDS | 25.0% |
| ! | AGAGTTCAAGTAATGAAAAA+GGG | + | tig0022921:25060-25079 | Msa1402790:CDS | 25.0% |
| AAAAGTCCACAATTTCTTTG+TGG | + | tig0022921:23350-23369 | Msa1402790:CDS | 30.0% | |
| ATACAAAGCTACTATTAGTG+GGG | - | tig0022921:23677-23696 | None:intergenic | 30.0% | |
| GATACAAAGCTACTATTAGT+GGG | - | tig0022921:23678-23697 | None:intergenic | 30.0% | |
| AGATACAAAGCTACTATTAG+TGG | - | tig0022921:23679-23698 | None:intergenic | 30.0% | |
| CTTCTAATATGTGAGCATAT+TGG | - | tig0022921:23704-23723 | None:intergenic | 30.0% | |
| GTTCTTGGATATATGAAAGA+AGG | + | tig0022921:23762-23781 | Msa1402790:intron | 30.0% | |
| !! | TTTCCTTAAGTTGAAGACAA+GGG | - | tig0022921:24496-24515 | None:intergenic | 30.0% |
| !! | ATTTCCTTAAGTTGAAGACA+AGG | - | tig0022921:24497-24516 | None:intergenic | 30.0% |
| ! | TGTGAATTTAAGGCTCTTTA+TGG | - | tig0022921:24634-24653 | None:intergenic | 30.0% |
| TCATGTCTTGTGTGAATTTA+AGG | - | tig0022921:24644-24663 | None:intergenic | 30.0% | |
| !! | GACATGAACCAAATTTTGAT+AGG | + | tig0022921:24657-24676 | Msa1402790:intron | 30.0% |
| AGATGCATCTTAATCATTGT+AGG | + | tig0022921:24881-24900 | Msa1402790:CDS | 30.0% | |
| ! | ATCATTGTAGGTCTTGTATA+CGG | + | tig0022921:24893-24912 | Msa1402790:CDS | 30.0% |
| !! | TTGGTTGTGTTTGTTTCTTT+TGG | - | tig0022921:24999-25018 | None:intergenic | 30.0% |
| AAAAGAAACAAACACAACCA+AGG | + | tig0022921:24998-25017 | Msa1402790:CDS | 30.0% | |
| TTCAAGTAATGAAAAAGGGA+TGG | + | tig0022921:25064-25083 | Msa1402790:CDS | 30.0% | |
| AAAAGTCCACAATTTCTTTG+TGG | + | tig0022921:23350-23369 | Msa1402790:CDS | 30.0% | |
| ATACAAAGCTACTATTAGTG+GGG | - | tig0022921:23677-23696 | None:intergenic | 30.0% | |
| GATACAAAGCTACTATTAGT+GGG | - | tig0022921:23678-23697 | None:intergenic | 30.0% | |
| AGATACAAAGCTACTATTAG+TGG | - | tig0022921:23679-23698 | None:intergenic | 30.0% | |
| CTTCTAATATGTGAGCATAT+TGG | - | tig0022921:23704-23723 | None:intergenic | 30.0% | |
| GTTCTTGGATATATGAAAGA+AGG | + | tig0022921:23762-23781 | Msa1402790:intron | 30.0% | |
| !! | TTTCCTTAAGTTGAAGACAA+GGG | - | tig0022921:24496-24515 | None:intergenic | 30.0% |
| !! | ATTTCCTTAAGTTGAAGACA+AGG | - | tig0022921:24497-24516 | None:intergenic | 30.0% |
| ! | TGTGAATTTAAGGCTCTTTA+TGG | - | tig0022921:24634-24653 | None:intergenic | 30.0% |
| TCATGTCTTGTGTGAATTTA+AGG | - | tig0022921:24644-24663 | None:intergenic | 30.0% | |
| !! | GACATGAACCAAATTTTGAT+AGG | + | tig0022921:24657-24676 | Msa1402790:intron | 30.0% |
| AGATGCATCTTAATCATTGT+AGG | + | tig0022921:24881-24900 | Msa1402790:CDS | 30.0% | |
| ! | ATCATTGTAGGTCTTGTATA+CGG | + | tig0022921:24893-24912 | Msa1402790:CDS | 30.0% |
| !! | TTGGTTGTGTTTGTTTCTTT+TGG | - | tig0022921:24999-25018 | None:intergenic | 30.0% |
| AAAAGAAACAAACACAACCA+AGG | + | tig0022921:24998-25017 | Msa1402790:CDS | 30.0% | |
| TTCAAGTAATGAAAAAGGGA+TGG | + | tig0022921:25064-25083 | Msa1402790:CDS | 30.0% | |
| TCCACAATTTCTTTGTGGAT+CGG | + | tig0022921:23355-23374 | Msa1402790:CDS | 35.0% | |
| ! | CTCTTTCAATGGAAGTACAT+CGG | - | tig0022921:23430-23449 | None:intergenic | 35.0% |
| TGTACATCATCCTCTTTCAA+TGG | - | tig0022921:23441-23460 | None:intergenic | 35.0% | |
| TGAAAGAGGATGATGTACAT+AGG | + | tig0022921:23442-23461 | Msa1402790:CDS | 35.0% | |
| GAAAGAGGATGATGTACATA+GGG | + | tig0022921:23443-23462 | Msa1402790:CDS | 35.0% | |
| GAGAGATTGAGGAAAGAATT+AGG | + | tig0022921:23528-23547 | Msa1402790:CDS | 35.0% | |
| ATTGAGGAAAGAATTAGGAC+TGG | + | tig0022921:23533-23552 | Msa1402790:CDS | 35.0% | |
| AAATCTGTCACCTTCACAAA+AGG | - | tig0022921:23573-23592 | None:intergenic | 35.0% | |
| ! | TTTTGTGAAGGTGACAGATT+TGG | + | tig0022921:23572-23591 | Msa1402790:intron | 35.0% |
| ACATATTAGAAGATCCAGCT+GGG | + | tig0022921:23712-23731 | Msa1402790:CDS | 35.0% | |
| TAATGATCACCATTAGGAAG+TGG | - | tig0022921:23827-23846 | None:intergenic | 35.0% | |
| TGTATTTCCCTGTCAGAAAT+GGG | - | tig0022921:24056-24075 | None:intergenic | 35.0% | |
| TTGTATTTCCCTGTCAGAAA+TGG | - | tig0022921:24057-24076 | None:intergenic | 35.0% | |
| GCATCAAAACACAATACAAG+CGG | - | tig0022921:24207-24226 | None:intergenic | 35.0% | |
| TTATATCTCTCAAGTGCACT+TGG | + | tig0022921:24362-24381 | Msa1402790:intron | 35.0% | |
| TTGTCATTACATGCATGTGT+TGG | + | tig0022921:24406-24425 | Msa1402790:intron | 35.0% | |
| GATTGAAACTATATGTGTGC+TGG | - | tig0022921:24454-24473 | None:intergenic | 35.0% | |
| GGGAATATGAAAACTATACG+TGG | - | tig0022921:24476-24495 | None:intergenic | 35.0% | |
| ATTCCCTTGTCTTCAACTTA+AGG | + | tig0022921:24490-24509 | Msa1402790:intron | 35.0% | |
| GTTGATGCTCATTCTATAGT+AGG | - | tig0022921:24577-24596 | None:intergenic | 35.0% | |
| TACTGGGATAATTACAACTG+AGG | - | tig0022921:24740-24759 | None:intergenic | 35.0% | |
| TTGGAAAGAAGAATAGCTGA+GGG | + | tig0022921:24940-24959 | Msa1402790:CDS | 35.0% | |
| ACTTGAACTCTTATTCTCCT+CGG | - | tig0022921:25051-25070 | None:intergenic | 35.0% | |
| CTTCTATTATCTTCAGTCTC+AGG | - | tig0022921:25095-25114 | None:intergenic | 35.0% | |
| TCCACAATTTCTTTGTGGAT+CGG | + | tig0022921:23355-23374 | Msa1402790:CDS | 35.0% | |
| ! | CTCTTTCAATGGAAGTACAT+CGG | - | tig0022921:23430-23449 | None:intergenic | 35.0% |
| TGTACATCATCCTCTTTCAA+TGG | - | tig0022921:23441-23460 | None:intergenic | 35.0% | |
| TGAAAGAGGATGATGTACAT+AGG | + | tig0022921:23442-23461 | Msa1402790:CDS | 35.0% | |
| GAAAGAGGATGATGTACATA+GGG | + | tig0022921:23443-23462 | Msa1402790:CDS | 35.0% | |
| GAGAGATTGAGGAAAGAATT+AGG | + | tig0022921:23528-23547 | Msa1402790:CDS | 35.0% | |
| ATTGAGGAAAGAATTAGGAC+TGG | + | tig0022921:23533-23552 | Msa1402790:CDS | 35.0% | |
| AAATCTGTCACCTTCACAAA+AGG | - | tig0022921:23573-23592 | None:intergenic | 35.0% | |
| ! | TTTTGTGAAGGTGACAGATT+TGG | + | tig0022921:23572-23591 | Msa1402790:intron | 35.0% |
| ACATATTAGAAGATCCAGCT+GGG | + | tig0022921:23712-23731 | Msa1402790:CDS | 35.0% | |
| TAATGATCACCATTAGGAAG+TGG | - | tig0022921:23827-23846 | None:intergenic | 35.0% | |
| TGTATTTCCCTGTCAGAAAT+GGG | - | tig0022921:24056-24075 | None:intergenic | 35.0% | |
| TTGTATTTCCCTGTCAGAAA+TGG | - | tig0022921:24057-24076 | None:intergenic | 35.0% | |
| GCATCAAAACACAATACAAG+CGG | - | tig0022921:24207-24226 | None:intergenic | 35.0% | |
| TTATATCTCTCAAGTGCACT+TGG | + | tig0022921:24362-24381 | Msa1402790:intron | 35.0% | |
| TTGTCATTACATGCATGTGT+TGG | + | tig0022921:24406-24425 | Msa1402790:intron | 35.0% | |
| GATTGAAACTATATGTGTGC+TGG | - | tig0022921:24454-24473 | None:intergenic | 35.0% | |
| GGGAATATGAAAACTATACG+TGG | - | tig0022921:24476-24495 | None:intergenic | 35.0% | |
| ATTCCCTTGTCTTCAACTTA+AGG | + | tig0022921:24490-24509 | Msa1402790:intron | 35.0% | |
| GTTGATGCTCATTCTATAGT+AGG | - | tig0022921:24577-24596 | None:intergenic | 35.0% | |
| TACTGGGATAATTACAACTG+AGG | - | tig0022921:24740-24759 | None:intergenic | 35.0% | |
| TTGGAAAGAAGAATAGCTGA+GGG | + | tig0022921:24940-24959 | Msa1402790:CDS | 35.0% | |
| ACTTGAACTCTTATTCTCCT+CGG | - | tig0022921:25051-25070 | None:intergenic | 35.0% | |
| CTTCTATTATCTTCAGTCTC+AGG | - | tig0022921:25095-25114 | None:intergenic | 35.0% | |
| CCACAATTTCTTTGTGGATC+GGG | + | tig0022921:23356-23375 | Msa1402790:CDS | 40.0% | |
| ! | ACTTTGAGAAAGAGCACATG+TGG | + | tig0022921:23388-23407 | Msa1402790:CDS | 40.0% |
| CGATGTACTTCCATTGAAAG+AGG | + | tig0022921:23428-23447 | Msa1402790:CDS | 40.0% | |
| ATGCAGCAATAGAGAGATTG+AGG | + | tig0022921:23517-23536 | Msa1402790:CDS | 40.0% | |
| AGGAAAGAATTAGGACTGGA+TGG | + | tig0022921:23537-23556 | Msa1402790:CDS | 40.0% | |
| ! | ACTAGAGAAACCAAAAGCGT+GGG | + | tig0022921:23611-23630 | Msa1402790:CDS | 40.0% |
| CACATATTAGAAGATCCAGC+TGG | + | tig0022921:23711-23730 | Msa1402790:CDS | 40.0% | |
| CATATTAGAAGATCCAGCTG+GGG | + | tig0022921:23713-23732 | Msa1402790:CDS | 40.0% | |
| TTATAAGATGATACCCCAGC+TGG | - | tig0022921:23729-23748 | None:intergenic | 40.0% | |
| ! | CTGGGGTATCATCTTATAAC+TGG | + | tig0022921:23730-23749 | Msa1402790:intron | 40.0% |
| !! | GCTAATGGATTTGCAACTTC+CGG | - | tig0022921:23798-23817 | None:intergenic | 40.0% |
| GGAAGTTGCAAATCCATTAG+CGG | + | tig0022921:23797-23816 | Msa1402790:intron | 40.0% | |
| TTCTGACAGGGAAATACAAG+CGG | + | tig0022921:24058-24077 | Msa1402790:intron | 40.0% | |
| ! | TTTTCTCTCACCTTAGAGAG+TGG | - | tig0022921:24240-24259 | None:intergenic | 40.0% |
| GCTCATTCTATAGTAGGTGA+TGG | - | tig0022921:24571-24590 | None:intergenic | 40.0% | |
| AGCATCAACTTAATTACCGC+TGG | + | tig0022921:24588-24607 | Msa1402790:intron | 40.0% | |
| CTCAGCTATTCTTCTTTCCA+AGG | - | tig0022921:24941-24960 | None:intergenic | 40.0% | |
| CTTGGAAAGAAGAATAGCTG+AGG | + | tig0022921:24939-24958 | Msa1402790:CDS | 40.0% | |
| AGAATAGCTGAGGGAAATGT+TGG | + | tig0022921:24949-24968 | Msa1402790:CDS | 40.0% | |
| AGGGAAATGTTGGAACTTCT+GGG | + | tig0022921:24959-24978 | Msa1402790:CDS | 40.0% | |
| !! | TTTCAGGTTGCACTTCAATC+GGG | - | tig0022921:25028-25047 | None:intergenic | 40.0% |
| !! | GTTTCAGGTTGCACTTCAAT+CGG | - | tig0022921:25029-25048 | None:intergenic | 40.0% |
| CCACAATTTCTTTGTGGATC+GGG | + | tig0022921:23356-23375 | Msa1402790:CDS | 40.0% | |
| ! | ACTTTGAGAAAGAGCACATG+TGG | + | tig0022921:23388-23407 | Msa1402790:CDS | 40.0% |
| CGATGTACTTCCATTGAAAG+AGG | + | tig0022921:23428-23447 | Msa1402790:CDS | 40.0% | |
| ATGCAGCAATAGAGAGATTG+AGG | + | tig0022921:23517-23536 | Msa1402790:CDS | 40.0% | |
| AGGAAAGAATTAGGACTGGA+TGG | + | tig0022921:23537-23556 | Msa1402790:CDS | 40.0% | |
| ! | ACTAGAGAAACCAAAAGCGT+GGG | + | tig0022921:23611-23630 | Msa1402790:CDS | 40.0% |
| CACATATTAGAAGATCCAGC+TGG | + | tig0022921:23711-23730 | Msa1402790:CDS | 40.0% | |
| CATATTAGAAGATCCAGCTG+GGG | + | tig0022921:23713-23732 | Msa1402790:CDS | 40.0% | |
| TTATAAGATGATACCCCAGC+TGG | - | tig0022921:23729-23748 | None:intergenic | 40.0% | |
| ! | CTGGGGTATCATCTTATAAC+TGG | + | tig0022921:23730-23749 | Msa1402790:intron | 40.0% |
| !! | GCTAATGGATTTGCAACTTC+CGG | - | tig0022921:23798-23817 | None:intergenic | 40.0% |
| GGAAGTTGCAAATCCATTAG+CGG | + | tig0022921:23797-23816 | Msa1402790:intron | 40.0% | |
| TTCTGACAGGGAAATACAAG+CGG | + | tig0022921:24058-24077 | Msa1402790:intron | 40.0% | |
| ! | TTTTCTCTCACCTTAGAGAG+TGG | - | tig0022921:24240-24259 | None:intergenic | 40.0% |
| GCTCATTCTATAGTAGGTGA+TGG | - | tig0022921:24571-24590 | None:intergenic | 40.0% | |
| AGCATCAACTTAATTACCGC+TGG | + | tig0022921:24588-24607 | Msa1402790:intron | 40.0% | |
| CTCAGCTATTCTTCTTTCCA+AGG | - | tig0022921:24941-24960 | None:intergenic | 40.0% | |
| CTTGGAAAGAAGAATAGCTG+AGG | + | tig0022921:24939-24958 | Msa1402790:CDS | 40.0% | |
| AGAATAGCTGAGGGAAATGT+TGG | + | tig0022921:24949-24968 | Msa1402790:CDS | 40.0% | |
| AGGGAAATGTTGGAACTTCT+GGG | + | tig0022921:24959-24978 | Msa1402790:CDS | 40.0% | |
| !! | TTTCAGGTTGCACTTCAATC+GGG | - | tig0022921:25028-25047 | None:intergenic | 40.0% |
| !! | GTTTCAGGTTGCACTTCAAT+CGG | - | tig0022921:25029-25048 | None:intergenic | 40.0% |
| CCCGATCCACAAAGAAATTG+TGG | - | tig0022921:23359-23378 | None:intergenic | 45.0% | |
| TAGGGTGTATGAGCTTCCAA+TGG | + | tig0022921:23461-23480 | Msa1402790:CDS | 45.0% | |
| CACTAGAGAAACCAAAAGCG+TGG | + | tig0022921:23610-23629 | Msa1402790:CDS | 45.0% | |
| ! | AAACCAAAAGCGTGGGTGAA+GGG | + | tig0022921:23618-23637 | Msa1402790:CDS | 45.0% |
| AACTGGTGCTCACATGTTCT+TGG | + | tig0022921:23747-23766 | Msa1402790:intron | 45.0% | |
| AAGAGAAGCCCATTTCTGAC+AGG | + | tig0022921:24045-24064 | Msa1402790:intron | 45.0% | |
| AGAGAAGCCCATTTCTGACA+GGG | + | tig0022921:24046-24065 | Msa1402790:intron | 45.0% | |
| TCGTGATTGGGATGTCAAGA+AGG | + | tig0022921:24089-24108 | Msa1402790:intron | 45.0% | |
| TAAGGTCATGGACCTTCTGA+AGG | - | tig0022921:24125-24144 | None:intergenic | 45.0% | |
| AGATACCTGTCCACTCTCTA+AGG | + | tig0022921:24227-24246 | Msa1402790:CDS | 45.0% | |
| TCTTCTTTCCAAGGTTTCCG+CGG | - | tig0022921:24932-24951 | None:intergenic | 45.0% | |
| GAGGGAAATGTTGGAACTTC+TGG | + | tig0022921:24958-24977 | Msa1402790:CDS | 45.0% | |
| CTCTTATTCTCCTCGGTTTC+AGG | - | tig0022921:25044-25063 | None:intergenic | 45.0% | |
| CCCGATCCACAAAGAAATTG+TGG | - | tig0022921:23359-23378 | None:intergenic | 45.0% | |
| TAGGGTGTATGAGCTTCCAA+TGG | + | tig0022921:23461-23480 | Msa1402790:CDS | 45.0% | |
| CACTAGAGAAACCAAAAGCG+TGG | + | tig0022921:23610-23629 | Msa1402790:CDS | 45.0% | |
| ! | AAACCAAAAGCGTGGGTGAA+GGG | + | tig0022921:23618-23637 | Msa1402790:CDS | 45.0% |
| AACTGGTGCTCACATGTTCT+TGG | + | tig0022921:23747-23766 | Msa1402790:intron | 45.0% | |
| AAGAGAAGCCCATTTCTGAC+AGG | + | tig0022921:24045-24064 | Msa1402790:intron | 45.0% | |
| AGAGAAGCCCATTTCTGACA+GGG | + | tig0022921:24046-24065 | Msa1402790:intron | 45.0% | |
| TCGTGATTGGGATGTCAAGA+AGG | + | tig0022921:24089-24108 | Msa1402790:intron | 45.0% | |
| TAAGGTCATGGACCTTCTGA+AGG | - | tig0022921:24125-24144 | None:intergenic | 45.0% | |
| AGATACCTGTCCACTCTCTA+AGG | + | tig0022921:24227-24246 | Msa1402790:CDS | 45.0% | |
| TCTTCTTTCCAAGGTTTCCG+CGG | - | tig0022921:24932-24951 | None:intergenic | 45.0% | |
| GAGGGAAATGTTGGAACTTC+TGG | + | tig0022921:24958-24977 | Msa1402790:CDS | 45.0% | |
| CTCTTATTCTCCTCGGTTTC+AGG | - | tig0022921:25044-25063 | None:intergenic | 45.0% | |
| GGTGTATGAGCTTCCAATGG+CGG | + | tig0022921:23464-23483 | Msa1402790:CDS | 50.0% | |
| GTGTATGAGCTTCCAATGGC+GGG | + | tig0022921:23465-23484 | Msa1402790:CDS | 50.0% | |
| TGTATGAGCTTCCAATGGCG+GGG | + | tig0022921:23466-23485 | Msa1402790:CDS | 50.0% | |
| TTAATCTGCTTCCCCGCCAT+TGG | - | tig0022921:23480-23499 | None:intergenic | 50.0% | |
| ! | GAAACCAAAAGCGTGGGTGA+AGG | + | tig0022921:23617-23636 | Msa1402790:CDS | 50.0% |
| GAAAGAAGGCCTGCAAACTC+CGG | + | tig0022921:23776-23795 | Msa1402790:intron | 50.0% | |
| TTGCAACTTCCGGAGTTTGC+AGG | - | tig0022921:23788-23807 | None:intergenic | 50.0% | |
| AGGAAGTGGAAGTCCGCTAA+TGG | - | tig0022921:23813-23832 | None:intergenic | 50.0% | |
| ! | AGCGGACTTCCACTTCCTAA+TGG | + | tig0022921:23815-23834 | Msa1402790:intron | 50.0% |
| AGCGGTCATCACTTCGTGAT+TGG | + | tig0022921:24076-24095 | Msa1402790:intron | 50.0% | |
| GCGGTCATCACTTCGTGATT+GGG | + | tig0022921:24077-24096 | Msa1402790:intron | 50.0% | |
| GGCAAACCAAGACCTTCAGA+AGG | + | tig0022921:24110-24129 | Msa1402790:CDS | 50.0% | |
| ! | CATGGACCTTCTGAAGGTCT+TGG | - | tig0022921:24119-24138 | None:intergenic | 50.0% |
| GCTCGAGTCTCATAAGGTCA+TGG | - | tig0022921:24137-24156 | None:intergenic | 50.0% | |
| GACCTTATGAGACTCGAGCA+TGG | + | tig0022921:24138-24157 | Msa1402790:CDS | 50.0% | |
| GTCCATGCTCGAGTCTCATA+AGG | - | tig0022921:24143-24162 | None:intergenic | 50.0% | |
| !! | TTCGTCGGTGCTGTATAGTC+TGG | - | tig0022921:24181-24200 | None:intergenic | 50.0% |
| !! | AGACTATACAGCACCGACGA+AGG | + | tig0022921:24180-24199 | Msa1402790:CDS | 50.0% |
| CAATACAAGCGGACCTTCGT+CGG | - | tig0022921:24196-24215 | None:intergenic | 50.0% | |
| TCTCACCTTAGAGAGTGGAC+AGG | - | tig0022921:24235-24254 | None:intergenic | 50.0% | |
| ACGGATCTACACTACAACCG+CGG | + | tig0022921:24912-24931 | Msa1402790:CDS | 50.0% | |
| ! | CACTTCAATCGGGTTGTCCT+TGG | - | tig0022921:25018-25037 | None:intergenic | 50.0% |
| TGAAGTGCAACCTGAAACCG+AGG | + | tig0022921:25031-25050 | Msa1402790:CDS | 50.0% | |
| GGTGTATGAGCTTCCAATGG+CGG | + | tig0022921:23464-23483 | Msa1402790:CDS | 50.0% | |
| GTGTATGAGCTTCCAATGGC+GGG | + | tig0022921:23465-23484 | Msa1402790:CDS | 50.0% | |
| TGTATGAGCTTCCAATGGCG+GGG | + | tig0022921:23466-23485 | Msa1402790:CDS | 50.0% | |
| TTAATCTGCTTCCCCGCCAT+TGG | - | tig0022921:23480-23499 | None:intergenic | 50.0% | |
| ! | GAAACCAAAAGCGTGGGTGA+AGG | + | tig0022921:23617-23636 | Msa1402790:CDS | 50.0% |
| GAAAGAAGGCCTGCAAACTC+CGG | + | tig0022921:23776-23795 | Msa1402790:intron | 50.0% | |
| TTGCAACTTCCGGAGTTTGC+AGG | - | tig0022921:23788-23807 | None:intergenic | 50.0% | |
| AGGAAGTGGAAGTCCGCTAA+TGG | - | tig0022921:23813-23832 | None:intergenic | 50.0% | |
| ! | AGCGGACTTCCACTTCCTAA+TGG | + | tig0022921:23815-23834 | Msa1402790:intron | 50.0% |
| AGCGGTCATCACTTCGTGAT+TGG | + | tig0022921:24076-24095 | Msa1402790:intron | 50.0% | |
| GCGGTCATCACTTCGTGATT+GGG | + | tig0022921:24077-24096 | Msa1402790:intron | 50.0% | |
| GGCAAACCAAGACCTTCAGA+AGG | + | tig0022921:24110-24129 | Msa1402790:CDS | 50.0% | |
| ! | CATGGACCTTCTGAAGGTCT+TGG | - | tig0022921:24119-24138 | None:intergenic | 50.0% |
| GCTCGAGTCTCATAAGGTCA+TGG | - | tig0022921:24137-24156 | None:intergenic | 50.0% | |
| GACCTTATGAGACTCGAGCA+TGG | + | tig0022921:24138-24157 | Msa1402790:CDS | 50.0% | |
| GTCCATGCTCGAGTCTCATA+AGG | - | tig0022921:24143-24162 | None:intergenic | 50.0% | |
| !! | TTCGTCGGTGCTGTATAGTC+TGG | - | tig0022921:24181-24200 | None:intergenic | 50.0% |
| !! | AGACTATACAGCACCGACGA+AGG | + | tig0022921:24180-24199 | Msa1402790:CDS | 50.0% |
| CAATACAAGCGGACCTTCGT+CGG | - | tig0022921:24196-24215 | None:intergenic | 50.0% | |
| TCTCACCTTAGAGAGTGGAC+AGG | - | tig0022921:24235-24254 | None:intergenic | 50.0% | |
| ACGGATCTACACTACAACCG+CGG | + | tig0022921:24912-24931 | Msa1402790:CDS | 50.0% | |
| ! | CACTTCAATCGGGTTGTCCT+TGG | - | tig0022921:25018-25037 | None:intergenic | 50.0% |
| TGAAGTGCAACCTGAAACCG+AGG | + | tig0022921:25031-25050 | Msa1402790:CDS | 50.0% | |
| ! | GAGACTCGAGCATGGACTGA+CGG | + | tig0022921:24146-24165 | Msa1402790:CDS | 55.0% |
| CACTACAACCGCGGAAACCT+TGG | + | tig0022921:24921-24940 | Msa1402790:CDS | 55.0% | |
| ! | GAGACTCGAGCATGGACTGA+CGG | + | tig0022921:24146-24165 | Msa1402790:CDS | 55.0% |
| CACTACAACCGCGGAAACCT+TGG | + | tig0022921:24921-24940 | Msa1402790:CDS | 55.0% | |
| ! | GCACCCTTCACCCACGCTTT+TGG | - | tig0022921:23624-23643 | None:intergenic | 60.0% |
| ! | CTCGAGCATGGACTGACGGA+CGG | + | tig0022921:24150-24169 | Msa1402790:CDS | 60.0% |
| ! | TCGAGCATGGACTGACGGAC+GGG | + | tig0022921:24151-24170 | Msa1402790:CDS | 60.0% |
| ! | GCACCCTTCACCCACGCTTT+TGG | - | tig0022921:23624-23643 | None:intergenic | 60.0% |
| ! | CTCGAGCATGGACTGACGGA+CGG | + | tig0022921:24150-24169 | Msa1402790:CDS | 60.0% |
| ! | TCGAGCATGGACTGACGGAC+GGG | + | tig0022921:24151-24170 | Msa1402790:CDS | 60.0% |
| ! | CGAGCATGGACTGACGGACG+GGG | + | tig0022921:24152-24171 | Msa1402790:CDS | 65.0% |
| ! | CGAGCATGGACTGACGGACG+GGG | + | tig0022921:24152-24171 | Msa1402790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022921 | gene | 23327 | 25119 | 23327 | ID=Msa1402790;Name=Msa1402790 |
| tig0022921 | mRNA | 23327 | 25119 | 23327 | ID=Msa1402790-mRNA-1;Parent=Msa1402790;Name=Msa1402790-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|0.75|0.66|0.5|4|0|261 |
| tig0022921 | exon | 23327 | 23575 | 23327 | ID=Msa1402790-mRNA-1:exon:19106;Parent=Msa1402790-mRNA-1 |
| tig0022921 | exon | 23582 | 23734 | 23582 | ID=Msa1402790-mRNA-1:exon:19107;Parent=Msa1402790-mRNA-1 |
| tig0022921 | exon | 24108 | 24248 | 24108 | ID=Msa1402790-mRNA-1:exon:19108;Parent=Msa1402790-mRNA-1 |
| tig0022921 | exon | 24877 | 25119 | 24877 | ID=Msa1402790-mRNA-1:exon:19109;Parent=Msa1402790-mRNA-1 |
| tig0022921 | CDS | 23327 | 23575 | 23327 | ID=Msa1402790-mRNA-1:cds;Parent=Msa1402790-mRNA-1 |
| tig0022921 | CDS | 23582 | 23734 | 23582 | ID=Msa1402790-mRNA-1:cds;Parent=Msa1402790-mRNA-1 |
| tig0022921 | CDS | 24108 | 24248 | 24108 | ID=Msa1402790-mRNA-1:cds;Parent=Msa1402790-mRNA-1 |
| tig0022921 | CDS | 24877 | 25119 | 24877 | ID=Msa1402790-mRNA-1:cds;Parent=Msa1402790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
