Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404570 | KEH30835.1 | 94.697 | 396 | 17 | 2 | 40 | 435 | 1 | 392 | 0.0 | 754 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404570 | sp|Q9ZQG9|E1314_ARATH | 50.729 | 343 | 162 | 2 | 72 | 413 | 30 | 366 | 2.25e-120 | 358 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404570 | A0A072UYA7 | 94.697 | 396 | 17 | 2 | 40 | 435 | 1 | 392 | 0.0 | 754 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1404570 | Msa1437520 | 0.888632 | 4.972280e-73 | -8.615850e-47 |
Msa0610760 | Msa1404570 | 0.892605 | 1.360945e-74 | -8.615850e-47 |
Msa0693470 | Msa1404570 | 0.889413 | 2.477563e-73 | -8.615850e-47 |
Msa0570670 | Msa1404570 | 0.830374 | 3.043642e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404570 | MtrunA17_Chr4g0043851 | 95.503 | 378 | 17 | 0 | 40 | 417 | 1 | 378 | 0.0 | 738 |
Msa1404570 | MtrunA17_Chr2g0285901 | 76.401 | 339 | 74 | 2 | 51 | 389 | 9 | 341 | 0.0 | 543 |
Msa1404570 | MtrunA17_Chr1g0189111 | 56.535 | 329 | 142 | 1 | 62 | 390 | 22 | 349 | 1.33e-136 | 398 |
Msa1404570 | MtrunA17_Chr4g0026321 | 52.632 | 323 | 153 | 0 | 70 | 392 | 28 | 350 | 9.83e-126 | 369 |
Msa1404570 | MtrunA17_Chr2g0321511 | 49.856 | 347 | 168 | 3 | 47 | 389 | 1 | 345 | 1.69e-122 | 361 |
Msa1404570 | MtrunA17_Chr4g0003281 | 48.368 | 337 | 173 | 1 | 69 | 404 | 38 | 374 | 9.22e-117 | 347 |
Msa1404570 | MtrunA17_Chr4g0064021 | 45.846 | 325 | 175 | 1 | 69 | 392 | 24 | 348 | 3.34e-102 | 309 |
Msa1404570 | MtrunA17_Chr5g0439251 | 49.231 | 325 | 162 | 3 | 68 | 390 | 22 | 345 | 4.73e-99 | 304 |
Msa1404570 | MtrunA17_Chr3g0144531 | 44.729 | 351 | 192 | 2 | 53 | 401 | 9 | 359 | 4.46e-98 | 301 |
Msa1404570 | MtrunA17_Chr1g0155001 | 46.584 | 322 | 170 | 2 | 71 | 390 | 24 | 345 | 1.37e-96 | 296 |
Msa1404570 | MtrunA17_Chr4g0034901 | 44.444 | 351 | 193 | 2 | 53 | 401 | 10 | 360 | 4.06e-96 | 296 |
Msa1404570 | MtrunA17_Chr1g0177171 | 45.706 | 326 | 174 | 3 | 67 | 390 | 34 | 358 | 1.06e-94 | 293 |
Msa1404570 | MtrunA17_Chr3g0119541 | 45.294 | 340 | 178 | 4 | 69 | 401 | 24 | 362 | 2.35e-94 | 288 |
Msa1404570 | MtrunA17_Chr1g0146831 | 45.846 | 325 | 170 | 3 | 64 | 386 | 24 | 344 | 5.69e-93 | 285 |
Msa1404570 | MtrunA17_Chr8g0389741 | 42.614 | 352 | 199 | 3 | 72 | 422 | 29 | 378 | 2.32e-89 | 280 |
Msa1404570 | MtrunA17_Chr6g0487261 | 43.275 | 342 | 192 | 2 | 72 | 412 | 28 | 368 | 1.05e-87 | 276 |
Msa1404570 | MtrunA17_Chr7g0223961 | 44.753 | 324 | 171 | 5 | 68 | 389 | 20 | 337 | 4.62e-86 | 270 |
Msa1404570 | MtrunA17_Chr7g0234821 | 42.462 | 325 | 181 | 5 | 72 | 391 | 27 | 350 | 1.32e-85 | 269 |
Msa1404570 | MtrunA17_Chr8g0339191 | 40.923 | 325 | 186 | 5 | 72 | 391 | 30 | 353 | 9.30e-81 | 256 |
Msa1404570 | MtrunA17_Chr4g0046311 | 39.514 | 329 | 191 | 5 | 69 | 390 | 21 | 348 | 2.53e-78 | 250 |
Msa1404570 | MtrunA17_Chr4g0043511 | 41.739 | 345 | 190 | 8 | 72 | 410 | 63 | 402 | 4.00e-76 | 247 |
Msa1404570 | MtrunA17_Chr3g0121271 | 38.387 | 310 | 186 | 3 | 72 | 377 | 27 | 335 | 4.88e-76 | 245 |
Msa1404570 | MtrunA17_Chr4g0075031 | 39.144 | 327 | 194 | 3 | 71 | 393 | 45 | 370 | 5.05e-75 | 243 |
Msa1404570 | MtrunA17_Chr8g0378621 | 36.443 | 343 | 208 | 4 | 47 | 385 | 7 | 343 | 2.02e-74 | 241 |
Msa1404570 | MtrunA17_Chr1g0161011 | 38.506 | 348 | 208 | 4 | 47 | 390 | 1 | 346 | 3.13e-73 | 238 |
Msa1404570 | MtrunA17_Chr4g0039011 | 40.123 | 324 | 182 | 6 | 69 | 392 | 40 | 351 | 6.62e-73 | 233 |
Msa1404570 | MtrunA17_Chr5g0434591 | 36.292 | 383 | 230 | 6 | 47 | 421 | 1 | 377 | 1.93e-72 | 236 |
Msa1404570 | MtrunA17_Chr3g0110371 | 36.826 | 334 | 206 | 3 | 49 | 378 | 2 | 334 | 1.10e-68 | 226 |
Msa1404570 | MtrunA17_Chr4g0038981 | 37.647 | 340 | 195 | 9 | 47 | 385 | 1 | 324 | 3.36e-66 | 214 |
Msa1404570 | MtrunA17_Chr4g0038971 | 38.438 | 320 | 184 | 8 | 68 | 387 | 20 | 326 | 5.38e-66 | 214 |
Msa1404570 | MtrunA17_Chr4g0038961 | 37.318 | 343 | 196 | 10 | 47 | 387 | 1 | 326 | 1.67e-65 | 213 |
Msa1404570 | MtrunA17_Chr4g0038941 | 39.009 | 323 | 184 | 6 | 65 | 387 | 46 | 355 | 7.11e-65 | 212 |
Msa1404570 | MtrunA17_Chr2g0294601 | 36.740 | 362 | 216 | 8 | 35 | 391 | 20 | 373 | 3.04e-63 | 209 |
Msa1404570 | MtrunA17_Chr4g0039071 | 38.462 | 325 | 190 | 7 | 66 | 388 | 20 | 336 | 1.32e-62 | 207 |
Msa1404570 | MtrunA17_Chr7g0250301 | 34.365 | 323 | 202 | 6 | 64 | 385 | 1 | 314 | 3.95e-62 | 204 |
Msa1404570 | MtrunA17_Chr2g0294591 | 35.241 | 332 | 203 | 8 | 69 | 397 | 28 | 350 | 7.48e-58 | 194 |
Msa1404570 | MtrunA17_Chr1g0174261 | 38.754 | 289 | 167 | 6 | 101 | 387 | 2 | 282 | 3.49e-57 | 192 |
Msa1404570 | MtrunA17_Chr4g0039021 | 37.676 | 284 | 167 | 5 | 97 | 379 | 7 | 281 | 5.61e-55 | 184 |
Msa1404570 | MtrunA17_Chr1g0148391 | 33.708 | 356 | 215 | 13 | 45 | 391 | 4 | 347 | 4.43e-51 | 179 |
Msa1404570 | MtrunA17_Chr7g0250321 | 33.219 | 292 | 184 | 6 | 46 | 336 | 5 | 286 | 2.80e-50 | 172 |
Msa1404570 | MtrunA17_Chr4g0069801 | 31.564 | 358 | 222 | 14 | 45 | 391 | 4 | 349 | 3.37e-48 | 171 |
Msa1404570 | MtrunA17_Chr4g0062771 | 32.231 | 363 | 222 | 14 | 41 | 392 | 6 | 355 | 3.78e-48 | 171 |
Msa1404570 | MtrunA17_Chr3g0138741 | 31.831 | 355 | 226 | 11 | 44 | 391 | 7 | 352 | 3.80e-48 | 171 |
Msa1404570 | MtrunA17_Chr2g0290821 | 32.530 | 332 | 209 | 10 | 69 | 390 | 26 | 352 | 3.61e-47 | 169 |
Msa1404570 | MtrunA17_Chr6g0461601 | 32.653 | 343 | 206 | 11 | 51 | 380 | 9 | 339 | 4.63e-47 | 168 |
Msa1404570 | MtrunA17_Chr7g0253091 | 33.134 | 335 | 204 | 11 | 68 | 391 | 23 | 348 | 2.50e-45 | 164 |
Msa1404570 | MtrunA17_Chr8g0383311 | 28.800 | 375 | 248 | 12 | 36 | 398 | 4 | 371 | 2.00e-44 | 161 |
Msa1404570 | MtrunA17_Chr4g0076581 | 33.233 | 331 | 206 | 11 | 69 | 390 | 31 | 355 | 2.00e-43 | 159 |
Msa1404570 | MtrunA17_Chr5g0436361 | 34.967 | 306 | 184 | 10 | 87 | 386 | 53 | 349 | 1.00e-41 | 151 |
Msa1404570 | MtrunA17_Chr3g0105981 | 32.335 | 334 | 209 | 10 | 70 | 395 | 26 | 350 | 7.74e-41 | 150 |
Msa1404570 | MtrunA17_Chr2g0306311 | 29.067 | 375 | 225 | 12 | 50 | 389 | 9 | 377 | 1.79e-39 | 148 |
Msa1404570 | MtrunA17_Chr3g0129341 | 29.288 | 379 | 243 | 15 | 48 | 417 | 10 | 372 | 1.92e-37 | 142 |
Msa1404570 | MtrunA17_Chr4g0018771 | 43.519 | 108 | 54 | 3 | 293 | 400 | 86 | 186 | 1.04e-19 | 87.4 |
Msa1404570 | MtrunA17_Chr4g0018861 | 42.478 | 113 | 58 | 3 | 288 | 400 | 79 | 184 | 1.99e-19 | 86.7 |
Msa1404570 | MtrunA17_Chr2g0294581 | 34.211 | 152 | 91 | 3 | 69 | 218 | 74 | 218 | 6.74e-17 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404570 | AT4G18340.1 | 62.667 | 375 | 140 | 0 | 38 | 412 | 1 | 375 | 9.37e-176 | 497 |
Msa1404570 | AT4G18340.2 | 62.234 | 376 | 142 | 0 | 38 | 413 | 1 | 376 | 1.51e-175 | 496 |
Msa1404570 | AT1G30080.2 | 64.589 | 353 | 121 | 3 | 40 | 388 | 1 | 353 | 1.40e-168 | 478 |
Msa1404570 | AT1G30080.1 | 64.589 | 353 | 121 | 3 | 40 | 388 | 1 | 353 | 1.84e-168 | 479 |
Msa1404570 | AT2G27500.2 | 51.020 | 343 | 161 | 2 | 72 | 413 | 30 | 366 | 5.13e-122 | 360 |
Msa1404570 | AT2G27500.1 | 50.729 | 343 | 162 | 2 | 72 | 413 | 30 | 366 | 2.29e-121 | 358 |
Msa1404570 | AT1G32860.1 | 50.155 | 323 | 159 | 1 | 70 | 390 | 28 | 350 | 7.96e-120 | 356 |
Msa1404570 | AT5G42100.2 | 51.692 | 325 | 154 | 2 | 68 | 389 | 24 | 348 | 1.31e-115 | 345 |
Msa1404570 | AT5G42100.1 | 51.692 | 325 | 154 | 2 | 68 | 389 | 24 | 348 | 2.31e-115 | 345 |
Msa1404570 | AT3G15800.1 | 48.036 | 331 | 170 | 2 | 68 | 396 | 40 | 370 | 1.05e-113 | 339 |
Msa1404570 | AT2G26600.1 | 43.860 | 342 | 190 | 2 | 68 | 408 | 31 | 371 | 4.09e-105 | 317 |
Msa1404570 | AT4G26830.1 | 48.286 | 350 | 172 | 5 | 51 | 398 | 8 | 350 | 1.90e-104 | 318 |
Msa1404570 | AT4G26830.2 | 47.953 | 342 | 166 | 5 | 59 | 398 | 23 | 354 | 9.50e-103 | 313 |
Msa1404570 | AT5G55180.1 | 47.761 | 335 | 166 | 4 | 57 | 389 | 19 | 346 | 4.10e-101 | 309 |
Msa1404570 | AT5G55180.2 | 47.761 | 335 | 166 | 4 | 57 | 389 | 19 | 346 | 5.53e-101 | 309 |
Msa1404570 | AT2G27500.3 | 50.340 | 294 | 139 | 2 | 121 | 413 | 1 | 288 | 3.15e-100 | 302 |
Msa1404570 | AT5G24318.4 | 45.399 | 326 | 172 | 3 | 66 | 389 | 25 | 346 | 7.28e-97 | 295 |
Msa1404570 | AT5G24318.2 | 45.238 | 336 | 177 | 4 | 66 | 398 | 25 | 356 | 4.79e-96 | 296 |
Msa1404570 | AT5G24318.1 | 45.238 | 336 | 177 | 4 | 66 | 398 | 25 | 356 | 9.08e-96 | 295 |
Msa1404570 | AT2G05790.1 | 45.963 | 322 | 171 | 3 | 68 | 387 | 22 | 342 | 2.01e-95 | 295 |
Msa1404570 | AT5G42720.1 | 44.058 | 345 | 191 | 2 | 48 | 390 | 3 | 347 | 7.26e-93 | 287 |
Msa1404570 | AT4G34480.2 | 45.706 | 326 | 176 | 1 | 72 | 396 | 27 | 352 | 8.62e-93 | 284 |
Msa1404570 | AT4G34480.1 | 43.666 | 371 | 200 | 3 | 52 | 421 | 12 | 374 | 8.91e-91 | 284 |
Msa1404570 | AT5G56590.1 | 43.769 | 329 | 180 | 3 | 61 | 387 | 19 | 344 | 1.20e-90 | 284 |
Msa1404570 | AT2G16230.1 | 42.045 | 352 | 201 | 3 | 72 | 421 | 26 | 376 | 8.24e-90 | 281 |
Msa1404570 | AT2G26600.2 | 45.221 | 272 | 148 | 1 | 137 | 408 | 7 | 277 | 2.81e-84 | 260 |
Msa1404570 | AT3G07320.1 | 41.231 | 325 | 185 | 5 | 72 | 391 | 26 | 349 | 4.02e-84 | 265 |
Msa1404570 | AT3G13560.4 | 40.683 | 322 | 186 | 3 | 68 | 385 | 23 | 343 | 1.26e-79 | 255 |
Msa1404570 | AT3G13560.1 | 40.683 | 322 | 186 | 3 | 68 | 385 | 23 | 343 | 1.26e-79 | 255 |
Msa1404570 | AT3G13560.2 | 40.683 | 322 | 186 | 3 | 68 | 385 | 23 | 343 | 1.26e-79 | 255 |
Msa1404570 | AT3G13560.5 | 40.683 | 322 | 186 | 3 | 68 | 385 | 23 | 343 | 1.26e-79 | 255 |
Msa1404570 | AT3G13560.3 | 40.683 | 322 | 186 | 3 | 68 | 385 | 23 | 343 | 1.26e-79 | 255 |
Msa1404570 | AT4G14080.1 | 39.198 | 324 | 192 | 4 | 68 | 387 | 39 | 361 | 6.13e-77 | 247 |
Msa1404570 | AT1G11820.1 | 39.329 | 328 | 194 | 3 | 72 | 395 | 45 | 371 | 9.72e-77 | 244 |
Msa1404570 | AT3G23770.1 | 38.507 | 335 | 198 | 5 | 64 | 391 | 30 | 363 | 1.18e-76 | 246 |
Msa1404570 | AT1G11820.3 | 39.628 | 323 | 190 | 3 | 72 | 390 | 45 | 366 | 9.05e-76 | 244 |
Msa1404570 | AT1G11820.2 | 39.628 | 323 | 190 | 3 | 72 | 390 | 45 | 366 | 1.22e-75 | 245 |
Msa1404570 | AT4G29360.1 | 42.236 | 322 | 184 | 2 | 65 | 385 | 21 | 341 | 3.19e-75 | 244 |
Msa1404570 | AT4G29360.2 | 42.994 | 314 | 177 | 2 | 65 | 377 | 31 | 343 | 4.50e-75 | 244 |
Msa1404570 | AT2G01630.2 | 40.123 | 324 | 189 | 3 | 71 | 390 | 23 | 345 | 6.05e-74 | 237 |
Msa1404570 | AT2G01630.3 | 40.123 | 324 | 189 | 3 | 71 | 390 | 23 | 345 | 1.67e-73 | 237 |
Msa1404570 | AT2G01630.1 | 40.123 | 324 | 189 | 3 | 71 | 390 | 23 | 345 | 6.52e-73 | 238 |
Msa1404570 | AT3G55430.1 | 38.617 | 347 | 201 | 9 | 68 | 410 | 26 | 364 | 9.37e-73 | 236 |
Msa1404570 | AT3G46570.1 | 41.515 | 330 | 182 | 8 | 65 | 389 | 21 | 344 | 5.67e-69 | 223 |
Msa1404570 | AT1G66250.1 | 36.785 | 367 | 220 | 6 | 60 | 421 | 26 | 385 | 2.86e-68 | 226 |
Msa1404570 | AT3G57270.1 | 38.871 | 319 | 183 | 8 | 72 | 387 | 28 | 337 | 2.10e-65 | 213 |
Msa1404570 | AT5G20390.1 | 36.812 | 345 | 206 | 8 | 40 | 381 | 1 | 336 | 4.24e-65 | 213 |
Msa1404570 | AT5G20340.1 | 38.390 | 323 | 184 | 7 | 63 | 381 | 35 | 346 | 1.37e-62 | 206 |
Msa1404570 | AT4G34480.3 | 46.332 | 259 | 136 | 1 | 158 | 416 | 3 | 258 | 1.48e-62 | 207 |
Msa1404570 | AT4G16260.1 | 34.870 | 347 | 213 | 6 | 47 | 391 | 1 | 336 | 2.76e-62 | 205 |
Msa1404570 | AT3G61810.1 | 34.316 | 373 | 213 | 9 | 37 | 390 | 13 | 372 | 1.48e-61 | 204 |
Msa1404570 | AT1G77780.1 | 34.375 | 352 | 218 | 9 | 52 | 401 | 4 | 344 | 1.00e-60 | 202 |
Msa1404570 | AT2G39640.1 | 36.070 | 341 | 205 | 7 | 53 | 389 | 9 | 340 | 1.67e-60 | 206 |
Msa1404570 | AT3G57260.1 | 35.429 | 350 | 206 | 9 | 39 | 387 | 6 | 336 | 4.37e-60 | 199 |
Msa1404570 | AT3G57260.2 | 35.429 | 350 | 206 | 9 | 39 | 387 | 22 | 352 | 4.96e-60 | 199 |
Msa1404570 | AT5G20330.1 | 37.243 | 341 | 191 | 8 | 53 | 381 | 8 | 337 | 7.31e-60 | 199 |
Msa1404570 | AT1G33220.1 | 36.686 | 338 | 191 | 8 | 53 | 377 | 8 | 335 | 8.98e-59 | 196 |
Msa1404570 | AT4G16260.2 | 35.350 | 314 | 195 | 4 | 78 | 391 | 2 | 307 | 1.59e-58 | 194 |
Msa1404570 | AT1G77790.1 | 34.783 | 345 | 212 | 8 | 46 | 387 | 7 | 341 | 1.79e-58 | 195 |
Msa1404570 | AT5G24318.3 | 45.662 | 219 | 113 | 3 | 182 | 398 | 3 | 217 | 1.17e-57 | 192 |
Msa1404570 | AT3G57240.1 | 34.579 | 321 | 195 | 8 | 68 | 387 | 32 | 338 | 2.54e-52 | 179 |
Msa1404570 | AT3G24330.1 | 31.978 | 369 | 229 | 14 | 34 | 391 | 5 | 362 | 4.59e-47 | 169 |
Msa1404570 | AT4G31140.1 | 32.229 | 332 | 212 | 10 | 67 | 391 | 23 | 348 | 7.45e-47 | 168 |
Msa1404570 | AT5G20560.1 | 31.642 | 335 | 211 | 9 | 50 | 379 | 15 | 336 | 7.73e-46 | 162 |
Msa1404570 | AT5G64790.1 | 33.230 | 322 | 198 | 11 | 68 | 380 | 25 | 338 | 1.14e-44 | 162 |
Msa1404570 | AT5G18220.1 | 32.229 | 332 | 212 | 8 | 66 | 391 | 25 | 349 | 7.21e-44 | 160 |
Msa1404570 | AT2G19440.2 | 32.571 | 350 | 215 | 13 | 53 | 391 | 3 | 342 | 4.31e-42 | 155 |
Msa1404570 | AT2G19440.1 | 32.571 | 350 | 215 | 13 | 53 | 391 | 3 | 342 | 4.31e-42 | 155 |
Msa1404570 | AT1G64760.1 | 32.249 | 338 | 210 | 11 | 68 | 395 | 22 | 350 | 7.00e-42 | 154 |
Msa1404570 | AT1G64760.2 | 32.249 | 338 | 210 | 11 | 68 | 395 | 22 | 350 | 7.00e-42 | 154 |
Msa1404570 | AT5G58090.1 | 30.422 | 332 | 218 | 9 | 67 | 391 | 18 | 343 | 3.95e-41 | 152 |
Msa1404570 | AT4G17180.1 | 30.514 | 331 | 210 | 11 | 69 | 390 | 23 | 342 | 5.29e-41 | 152 |
Msa1404570 | AT5G20870.1 | 31.956 | 363 | 220 | 14 | 44 | 390 | 6 | 357 | 5.67e-41 | 152 |
Msa1404570 | AT5G58480.1 | 31.498 | 327 | 209 | 9 | 68 | 386 | 23 | 342 | 7.91e-41 | 152 |
Msa1404570 | AT3G55780.1 | 32.075 | 318 | 200 | 10 | 85 | 394 | 49 | 358 | 1.62e-40 | 149 |
Msa1404570 | AT3G04010.1 | 31.965 | 341 | 213 | 11 | 48 | 380 | 14 | 343 | 2.15e-40 | 150 |
Find 69 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGGAACAAGATATTGAATT+AGG | 0.153002 | tig0023078:-35631 | None:intergenic |
ACATTTGCCATTGCTAAATT+AGG | 0.171344 | tig0023078:+35989 | Msa1404570:CDS |
TATGATTCCAATCTCATTCT+AGG | 0.189809 | tig0023078:-36160 | None:intergenic |
TCATAATGTAAATTTGTATT+AGG | 0.242481 | tig0023078:-35935 | None:intergenic |
ATATTGATTTAGAGGGAAAT+AGG | 0.284181 | tig0023078:-35085 | None:intergenic |
TTCGGACGTGTTGCGTCATT+TGG | 0.288335 | tig0023078:+35311 | Msa1404570:CDS |
CTAAATAACTTGTATATTGT+TGG | 0.296342 | tig0023078:-36404 | None:intergenic |
TAGTCTAGAGATATTTGATT+AGG | 0.302492 | tig0023078:-35878 | None:intergenic |
TGTGACAAATATTGATTTAG+AGG | 0.321820 | tig0023078:-35093 | None:intergenic |
GCGTCATTTGGAATAAACTA+TGG | 0.327515 | tig0023078:+35323 | Msa1404570:CDS |
TGCTCTAGTTCAGTTAGGTT+TGG | 0.339420 | tig0023078:+35673 | Msa1404570:CDS |
CTTGTTGTGGATCATTTAAT+TGG | 0.341370 | tig0023078:-35508 | None:intergenic |
ATCTTTGTGTCTGGAAGATA+TGG | 0.358675 | tig0023078:-35560 | None:intergenic |
GAGGTTAGGGTTTCTGAGAC+TGG | 0.362945 | tig0023078:+36025 | Msa1404570:CDS |
AGTCTAGAGATATTTGATTA+GGG | 0.367834 | tig0023078:-35877 | None:intergenic |
GTAAGAGAAATTGAAGTAGA+AGG | 0.368771 | tig0023078:-36310 | None:intergenic |
GATGATCTCCACGTCTGAAT+TGG | 0.369675 | tig0023078:-35459 | None:intergenic |
TTTGAATCCTAGAATGAGAT+TGG | 0.371338 | tig0023078:+36153 | Msa1404570:CDS |
TGAAAATTTGGAGGCAAAGA+AGG | 0.378580 | tig0023078:-35048 | None:intergenic |
AAAGGTGACTCTGATGAAAT+TGG | 0.380257 | tig0023078:+36058 | Msa1404570:CDS |
GGATCAACCATTCCTTGGTT+AGG | 0.386797 | tig0023078:-35914 | None:intergenic |
TCATTCTTATAAGCAAAATA+AGG | 0.388117 | tig0023078:-35854 | None:intergenic |
TCTCTTACCTCTTCTGCCAC+TGG | 0.396125 | tig0023078:+36325 | Msa1404570:CDS |
TTTAATGAAAATATGAAGAA+TGG | 0.404108 | tig0023078:+36196 | Msa1404570:CDS |
TGGAACAAGATATTGAATTA+GGG | 0.410253 | tig0023078:-35630 | None:intergenic |
CTCTTACCTCTTCTGCCACT+GGG | 0.413547 | tig0023078:+36326 | Msa1404570:CDS |
TGGAAGATATGGTTTGATAT+TGG | 0.415025 | tig0023078:-35549 | None:intergenic |
CCAACCTCAGAAAGGAACTA+TGG | 0.427631 | tig0023078:+36220 | Msa1404570:CDS |
TACAATGCTCTAGTTCAGTT+AGG | 0.432925 | tig0023078:+35668 | Msa1404570:CDS |
CCATAGTTCCTTTCTGAGGT+TGG | 0.438349 | tig0023078:-36220 | None:intergenic |
TATTAGGATCAACCATTCCT+TGG | 0.446836 | tig0023078:-35919 | None:intergenic |
ATCCACAACAAGCACTTCAA+TGG | 0.448948 | tig0023078:+35519 | Msa1404570:CDS |
TGATAACATGCTTTATGCTA+TGG | 0.465658 | tig0023078:+35955 | Msa1404570:CDS |
AGGATATGCATTGACCCAAA+AGG | 0.470969 | tig0023078:-35834 | None:intergenic |
TTGTAAGTCATACTTTCATC+AGG | 0.472826 | tig0023078:-36253 | None:intergenic |
AAAGTATGACTTACAATGTT+GGG | 0.473433 | tig0023078:+36260 | Msa1404570:CDS |
ATTCCAGTGATCTTTGTGTC+TGG | 0.474898 | tig0023078:-35569 | None:intergenic |
AAGATCACTGGAATTCAAGT+AGG | 0.477367 | tig0023078:+35578 | Msa1404570:CDS |
CTCTTCTGCCACTGGGACAA+AGG | 0.479527 | tig0023078:+36333 | Msa1404570:CDS |
TTTGTTGTTTGAAAATTTGG+AGG | 0.483866 | tig0023078:-35057 | None:intergenic |
GGCAACATTTACTCAAAGAA+TGG | 0.488334 | tig0023078:+35118 | Msa1404570:CDS |
GGATATGCATTGACCCAAAA+GGG | 0.491865 | tig0023078:-35833 | None:intergenic |
TTGTAAATGTTGATCACTGC+TGG | 0.497136 | tig0023078:-35650 | None:intergenic |
TTTATAACAAGAATTTATTG+AGG | 0.499075 | tig0023078:+36104 | Msa1404570:CDS |
TTAGGGTTTCTGAGACTGGT+TGG | 0.504743 | tig0023078:+36029 | Msa1404570:CDS |
GTGACAAATATTGATTTAGA+GGG | 0.511053 | tig0023078:-35092 | None:intergenic |
TCAAGAACTTCTAATGAACT+AGG | 0.514280 | tig0023078:-35719 | None:intergenic |
AATCTCATTCTAGGATTCAA+AGG | 0.515011 | tig0023078:-36151 | None:intergenic |
AGTTTCAGAAGTGAAATCTC+TGG | 0.515867 | tig0023078:+35767 | Msa1404570:CDS |
GAATCTTACCCTCCTTCAGC+TGG | 0.518663 | tig0023078:+35743 | Msa1404570:CDS |
GAGACTGGTTGGCCATCAAA+AGG | 0.519791 | tig0023078:+36040 | Msa1404570:CDS |
TCCACAACAAGCACTTCAAT+GGG | 0.523957 | tig0023078:+35520 | Msa1404570:CDS |
ATTTAATCCTAACCAAGGAA+TGG | 0.526689 | tig0023078:+35907 | Msa1404570:CDS |
CTTTGTCCCAGTGGCAGAAG+AGG | 0.529705 | tig0023078:-36332 | None:intergenic |
AGGAGACAAATGAAGAATGA+AGG | 0.534907 | tig0023078:+36124 | Msa1404570:CDS |
CTTCCAGACACAAAGATCAC+TGG | 0.544255 | tig0023078:+35566 | Msa1404570:CDS |
ACCCATTGAAGTGCTTGTTG+TGG | 0.545635 | tig0023078:-35521 | None:intergenic |
GCGAAAGCTTTAAGAATCTG+TGG | 0.549065 | tig0023078:-35437 | None:intergenic |
ATTAAAACCTAATTTAGCAA+TGG | 0.564223 | tig0023078:-35996 | None:intergenic |
TAAATCAATATTTGTCACAA+TGG | 0.569290 | tig0023078:+35097 | Msa1404570:CDS |
TAAACCATAGTTCCTTTCTG+AGG | 0.569646 | tig0023078:-36224 | None:intergenic |
GAAAGTATGACTTACAATGT+TGG | 0.572069 | tig0023078:+36259 | Msa1404570:CDS |
AGATCACTGGAATTCAAGTA+GGG | 0.581675 | tig0023078:+35579 | Msa1404570:CDS |
CTGAAACTACCAGCTGAAGG+AGG | 0.582451 | tig0023078:-35752 | None:intergenic |
AGAATGGACCAACCTCAGAA+AGG | 0.610841 | tig0023078:+36212 | Msa1404570:CDS |
AGCTTTCGCCAATTCAGACG+TGG | 0.617283 | tig0023078:+35451 | Msa1404570:CDS |
GTATTATTTAATCCTAACCA+AGG | 0.619362 | tig0023078:+35902 | Msa1404570:CDS |
TGAAACTACCAGCTGAAGGA+GGG | 0.628259 | tig0023078:-35751 | None:intergenic |
CTTCTGAAACTACCAGCTGA+AGG | 0.634495 | tig0023078:-35755 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTGTTGTTTGAAAATT+TGG | - | tig0023078:35063-35082 | None:intergenic | 15.0% |
!! | TCATAATGTAAATTTGTATT+AGG | - | tig0023078:35938-35957 | None:intergenic | 15.0% |
!! | TTTATAACAAGAATTTATTG+AGG | + | tig0023078:36104-36123 | Msa1404570:CDS | 15.0% |
!! | TTTAATGAAAATATGAAGAA+TGG | + | tig0023078:36196-36215 | Msa1404570:CDS | 15.0% |
!!! | AATTTTGTTGTTTGAAAATT+TGG | - | tig0023078:35063-35082 | None:intergenic | 15.0% |
!! | TCATAATGTAAATTTGTATT+AGG | - | tig0023078:35938-35957 | None:intergenic | 15.0% |
!! | TTTATAACAAGAATTTATTG+AGG | + | tig0023078:36104-36123 | Msa1404570:CDS | 15.0% |
!! | TTTAATGAAAATATGAAGAA+TGG | + | tig0023078:36196-36215 | Msa1404570:CDS | 15.0% |
!!! | ATAAGATGAGATTTTTTGTA+TGG | - | tig0023078:35015-35034 | None:intergenic | 20.0% |
!! | TAAATCAATATTTGTCACAA+TGG | + | tig0023078:35097-35116 | Msa1404570:CDS | 20.0% |
!! | TCATTCTTATAAGCAAAATA+AGG | - | tig0023078:35857-35876 | None:intergenic | 20.0% |
!! | ATTAAAACCTAATTTAGCAA+TGG | - | tig0023078:35999-36018 | None:intergenic | 20.0% |
!!! | ATTGCTAAATTAGGTTTTAA+TGG | + | tig0023078:35998-36017 | Msa1404570:CDS | 20.0% |
!!! | TTGCTAAATTAGGTTTTAAT+GGG | + | tig0023078:35999-36018 | Msa1404570:CDS | 20.0% |
!!! | CTAAATAACTTGTATATTGT+TGG | - | tig0023078:36407-36426 | None:intergenic | 20.0% |
!!! | ATAAGATGAGATTTTTTGTA+TGG | - | tig0023078:35015-35034 | None:intergenic | 20.0% |
!! | TAAATCAATATTTGTCACAA+TGG | + | tig0023078:35097-35116 | Msa1404570:CDS | 20.0% |
!! | TCATTCTTATAAGCAAAATA+AGG | - | tig0023078:35857-35876 | None:intergenic | 20.0% |
!! | ATTAAAACCTAATTTAGCAA+TGG | - | tig0023078:35999-36018 | None:intergenic | 20.0% |
!!! | ATTGCTAAATTAGGTTTTAA+TGG | + | tig0023078:35998-36017 | Msa1404570:CDS | 20.0% |
!!! | TTGCTAAATTAGGTTTTAAT+GGG | + | tig0023078:35999-36018 | Msa1404570:CDS | 20.0% |
!!! | CTAAATAACTTGTATATTGT+TGG | - | tig0023078:36407-36426 | None:intergenic | 20.0% |
!!! | GATTTTTTGTATGGTTGATT+TGG | - | tig0023078:35006-35025 | None:intergenic | 25.0% |
!!! | TTTGTTGTTTGAAAATTTGG+AGG | - | tig0023078:35060-35079 | None:intergenic | 25.0% |
!!! | ATATTGATTTAGAGGGAAAT+AGG | - | tig0023078:35088-35107 | None:intergenic | 25.0% |
!!! | GTGACAAATATTGATTTAGA+GGG | - | tig0023078:35095-35114 | None:intergenic | 25.0% |
!!! | TGTGACAAATATTGATTTAG+AGG | - | tig0023078:35096-35115 | None:intergenic | 25.0% |
! | TGCATGATGAAAAGAATAAT+AGG | - | tig0023078:35208-35227 | None:intergenic | 25.0% |
!! | ATTACAGATACAGGAATTTT+CGG | + | tig0023078:35293-35312 | Msa1404570:intron | 25.0% |
!!! | TCTTGTTTTTGTGATCTTTA+AGG | - | tig0023078:35402-35421 | None:intergenic | 25.0% |
! | TGGAACAAGATATTGAATTA+GGG | - | tig0023078:35633-35652 | None:intergenic | 25.0% |
!! | AAAAACAAAATCACCCTTTT+GGG | + | tig0023078:35820-35839 | Msa1404570:CDS | 25.0% |
! | AGTCTAGAGATATTTGATTA+GGG | - | tig0023078:35880-35899 | None:intergenic | 25.0% |
! | TAGTCTAGAGATATTTGATT+AGG | - | tig0023078:35881-35900 | None:intergenic | 25.0% |
! | GTATTATTTAATCCTAACCA+AGG | + | tig0023078:35902-35921 | Msa1404570:CDS | 25.0% |
! | AAAGTATGACTTACAATGTT+GGG | + | tig0023078:36260-36279 | Msa1404570:CDS | 25.0% |
!!! | GATTTTTTGTATGGTTGATT+TGG | - | tig0023078:35006-35025 | None:intergenic | 25.0% |
!!! | TTTGTTGTTTGAAAATTTGG+AGG | - | tig0023078:35060-35079 | None:intergenic | 25.0% |
!!! | ATATTGATTTAGAGGGAAAT+AGG | - | tig0023078:35088-35107 | None:intergenic | 25.0% |
!!! | GTGACAAATATTGATTTAGA+GGG | - | tig0023078:35095-35114 | None:intergenic | 25.0% |
!!! | TGTGACAAATATTGATTTAG+AGG | - | tig0023078:35096-35115 | None:intergenic | 25.0% |
! | TGCATGATGAAAAGAATAAT+AGG | - | tig0023078:35208-35227 | None:intergenic | 25.0% |
!! | ATTACAGATACAGGAATTTT+CGG | + | tig0023078:35293-35312 | Msa1404570:intron | 25.0% |
!!! | TCTTGTTTTTGTGATCTTTA+AGG | - | tig0023078:35402-35421 | None:intergenic | 25.0% |
! | TGGAACAAGATATTGAATTA+GGG | - | tig0023078:35633-35652 | None:intergenic | 25.0% |
!! | AAAAACAAAATCACCCTTTT+GGG | + | tig0023078:35820-35839 | Msa1404570:CDS | 25.0% |
! | AGTCTAGAGATATTTGATTA+GGG | - | tig0023078:35880-35899 | None:intergenic | 25.0% |
! | TAGTCTAGAGATATTTGATT+AGG | - | tig0023078:35881-35900 | None:intergenic | 25.0% |
! | GTATTATTTAATCCTAACCA+AGG | + | tig0023078:35902-35921 | Msa1404570:CDS | 25.0% |
! | AAAGTATGACTTACAATGTT+GGG | + | tig0023078:36260-36279 | Msa1404570:CDS | 25.0% |
GTGAAAAAACAGAACAAACA+GGG | - | tig0023078:35186-35205 | None:intergenic | 30.0% | |
GATTATGCAATTACAGATAC+AGG | + | tig0023078:35284-35303 | Msa1404570:intron | 30.0% | |
! | CTTGTTGTGGATCATTTAAT+TGG | - | tig0023078:35511-35530 | None:intergenic | 30.0% |
TGGAAGATATGGTTTGATAT+TGG | - | tig0023078:35552-35571 | None:intergenic | 30.0% | |
CTGGAACAAGATATTGAATT+AGG | - | tig0023078:35634-35653 | None:intergenic | 30.0% | |
TCAAGAACTTCTAATGAACT+AGG | - | tig0023078:35722-35741 | None:intergenic | 30.0% | |
! | CAAAAACAAAATCACCCTTT+TGG | + | tig0023078:35819-35838 | Msa1404570:CDS | 30.0% |
ATTTAATCCTAACCAAGGAA+TGG | + | tig0023078:35907-35926 | Msa1404570:CDS | 30.0% | |
TGATAACATGCTTTATGCTA+TGG | + | tig0023078:35955-35974 | Msa1404570:CDS | 30.0% | |
ACATTTGCCATTGCTAAATT+AGG | + | tig0023078:35989-36008 | Msa1404570:CDS | 30.0% | |
!! | ATTAGGTTTTAATGGGATAG+AGG | + | tig0023078:36006-36025 | Msa1404570:CDS | 30.0% |
! | TTTTAATGGGATAGAGGTTA+GGG | + | tig0023078:36012-36031 | Msa1404570:CDS | 30.0% |
!! | AATCTCATTCTAGGATTCAA+AGG | - | tig0023078:36154-36173 | None:intergenic | 30.0% |
TTTGAATCCTAGAATGAGAT+TGG | + | tig0023078:36153-36172 | Msa1404570:CDS | 30.0% | |
TATGATTCCAATCTCATTCT+AGG | - | tig0023078:36163-36182 | None:intergenic | 30.0% | |
TTGTAAGTCATACTTTCATC+AGG | - | tig0023078:36256-36275 | None:intergenic | 30.0% | |
! | GAAAGTATGACTTACAATGT+TGG | + | tig0023078:36259-36278 | Msa1404570:CDS | 30.0% |
GTAAGAGAAATTGAAGTAGA+AGG | - | tig0023078:36313-36332 | None:intergenic | 30.0% | |
GTGAAAAAACAGAACAAACA+GGG | - | tig0023078:35186-35205 | None:intergenic | 30.0% | |
GATTATGCAATTACAGATAC+AGG | + | tig0023078:35284-35303 | Msa1404570:intron | 30.0% | |
! | CTTGTTGTGGATCATTTAAT+TGG | - | tig0023078:35511-35530 | None:intergenic | 30.0% |
TGGAAGATATGGTTTGATAT+TGG | - | tig0023078:35552-35571 | None:intergenic | 30.0% | |
CTGGAACAAGATATTGAATT+AGG | - | tig0023078:35634-35653 | None:intergenic | 30.0% | |
TCAAGAACTTCTAATGAACT+AGG | - | tig0023078:35722-35741 | None:intergenic | 30.0% | |
! | CAAAAACAAAATCACCCTTT+TGG | + | tig0023078:35819-35838 | Msa1404570:CDS | 30.0% |
ATTTAATCCTAACCAAGGAA+TGG | + | tig0023078:35907-35926 | Msa1404570:CDS | 30.0% | |
TGATAACATGCTTTATGCTA+TGG | + | tig0023078:35955-35974 | Msa1404570:CDS | 30.0% | |
ACATTTGCCATTGCTAAATT+AGG | + | tig0023078:35989-36008 | Msa1404570:CDS | 30.0% | |
!! | ATTAGGTTTTAATGGGATAG+AGG | + | tig0023078:36006-36025 | Msa1404570:CDS | 30.0% |
! | TTTTAATGGGATAGAGGTTA+GGG | + | tig0023078:36012-36031 | Msa1404570:CDS | 30.0% |
!! | AATCTCATTCTAGGATTCAA+AGG | - | tig0023078:36154-36173 | None:intergenic | 30.0% |
TTTGAATCCTAGAATGAGAT+TGG | + | tig0023078:36153-36172 | Msa1404570:CDS | 30.0% | |
TATGATTCCAATCTCATTCT+AGG | - | tig0023078:36163-36182 | None:intergenic | 30.0% | |
TTGTAAGTCATACTTTCATC+AGG | - | tig0023078:36256-36275 | None:intergenic | 30.0% | |
! | GAAAGTATGACTTACAATGT+TGG | + | tig0023078:36259-36278 | Msa1404570:CDS | 30.0% |
GTAAGAGAAATTGAAGTAGA+AGG | - | tig0023078:36313-36332 | None:intergenic | 30.0% | |
TGAAAATTTGGAGGCAAAGA+AGG | - | tig0023078:35051-35070 | None:intergenic | 35.0% | |
GGCAACATTTACTCAAAGAA+TGG | + | tig0023078:35118-35137 | Msa1404570:CDS | 35.0% | |
GGTGAAAAAACAGAACAAAC+AGG | - | tig0023078:35187-35206 | None:intergenic | 35.0% | |
! | GCGTCATTTGGAATAAACTA+TGG | + | tig0023078:35323-35342 | Msa1404570:CDS | 35.0% |
!! | CACAACCAGAAAAAGTACTA+GGG | + | tig0023078:35366-35385 | Msa1404570:CDS | 35.0% |
ATCTTTGTGTCTGGAAGATA+TGG | - | tig0023078:35563-35582 | None:intergenic | 35.0% | |
AAGATCACTGGAATTCAAGT+AGG | + | tig0023078:35578-35597 | Msa1404570:CDS | 35.0% | |
AGATCACTGGAATTCAAGTA+GGG | + | tig0023078:35579-35598 | Msa1404570:CDS | 35.0% | |
TTGTAAATGTTGATCACTGC+TGG | - | tig0023078:35653-35672 | None:intergenic | 35.0% | |
! | TACAATGCTCTAGTTCAGTT+AGG | + | tig0023078:35668-35687 | Msa1404570:CDS | 35.0% |
AGTTTCAGAAGTGAAATCTC+TGG | + | tig0023078:35767-35786 | Msa1404570:CDS | 35.0% | |
TATTAGGATCAACCATTCCT+TGG | - | tig0023078:35922-35941 | None:intergenic | 35.0% | |
!! | GTTTTAATGGGATAGAGGTT+AGG | + | tig0023078:36011-36030 | Msa1404570:CDS | 35.0% |
AAAGGTGACTCTGATGAAAT+TGG | + | tig0023078:36058-36077 | Msa1404570:CDS | 35.0% | |
AGGAGACAAATGAAGAATGA+AGG | + | tig0023078:36124-36143 | Msa1404570:CDS | 35.0% | |
TAAACCATAGTTCCTTTCTG+AGG | - | tig0023078:36227-36246 | None:intergenic | 35.0% | |
!!! | TTTTTTTACCTTTGTCCCAG+TGG | - | tig0023078:36344-36363 | None:intergenic | 35.0% |
TGAAAATTTGGAGGCAAAGA+AGG | - | tig0023078:35051-35070 | None:intergenic | 35.0% | |
GGCAACATTTACTCAAAGAA+TGG | + | tig0023078:35118-35137 | Msa1404570:CDS | 35.0% | |
GGTGAAAAAACAGAACAAAC+AGG | - | tig0023078:35187-35206 | None:intergenic | 35.0% | |
! | GCGTCATTTGGAATAAACTA+TGG | + | tig0023078:35323-35342 | Msa1404570:CDS | 35.0% |
!! | CACAACCAGAAAAAGTACTA+GGG | + | tig0023078:35366-35385 | Msa1404570:CDS | 35.0% |
ATCTTTGTGTCTGGAAGATA+TGG | - | tig0023078:35563-35582 | None:intergenic | 35.0% | |
AAGATCACTGGAATTCAAGT+AGG | + | tig0023078:35578-35597 | Msa1404570:CDS | 35.0% | |
AGATCACTGGAATTCAAGTA+GGG | + | tig0023078:35579-35598 | Msa1404570:CDS | 35.0% | |
TTGTAAATGTTGATCACTGC+TGG | - | tig0023078:35653-35672 | None:intergenic | 35.0% | |
! | TACAATGCTCTAGTTCAGTT+AGG | + | tig0023078:35668-35687 | Msa1404570:CDS | 35.0% |
AGTTTCAGAAGTGAAATCTC+TGG | + | tig0023078:35767-35786 | Msa1404570:CDS | 35.0% | |
TATTAGGATCAACCATTCCT+TGG | - | tig0023078:35922-35941 | None:intergenic | 35.0% | |
!! | GTTTTAATGGGATAGAGGTT+AGG | + | tig0023078:36011-36030 | Msa1404570:CDS | 35.0% |
AAAGGTGACTCTGATGAAAT+TGG | + | tig0023078:36058-36077 | Msa1404570:CDS | 35.0% | |
AGGAGACAAATGAAGAATGA+AGG | + | tig0023078:36124-36143 | Msa1404570:CDS | 35.0% | |
TAAACCATAGTTCCTTTCTG+AGG | - | tig0023078:36227-36246 | None:intergenic | 35.0% | |
!!! | TTTTTTTACCTTTGTCCCAG+TGG | - | tig0023078:36344-36363 | None:intergenic | 35.0% |
!!! | CTAGCATTTTTTCTCTCTGC+AGG | + | tig0023078:35158-35177 | Msa1404570:CDS | 40.0% |
!!! | CCTAGTACTTTTTCTGGTTG+TGG | - | tig0023078:35368-35387 | None:intergenic | 40.0% |
!! | CCACAACCAGAAAAAGTACT+AGG | + | tig0023078:35365-35384 | Msa1404570:CDS | 40.0% |
!!! | AGAAGCCCTAGTACTTTTTC+TGG | - | tig0023078:35374-35393 | None:intergenic | 40.0% |
!! | GCGAAAGCTTTAAGAATCTG+TGG | - | tig0023078:35440-35459 | None:intergenic | 40.0% |
ATCCACAACAAGCACTTCAA+TGG | + | tig0023078:35519-35538 | Msa1404570:CDS | 40.0% | |
TCCACAACAAGCACTTCAAT+GGG | + | tig0023078:35520-35539 | Msa1404570:CDS | 40.0% | |
ATTCCAGTGATCTTTGTGTC+TGG | - | tig0023078:35572-35591 | None:intergenic | 40.0% | |
! | TGCTCTAGTTCAGTTAGGTT+TGG | + | tig0023078:35673-35692 | Msa1404570:CDS | 40.0% |
! | GGATATGCATTGACCCAAAA+GGG | - | tig0023078:35836-35855 | None:intergenic | 40.0% |
! | AGGATATGCATTGACCCAAA+AGG | - | tig0023078:35837-35856 | None:intergenic | 40.0% |
! | TCATCAGAGTCACCTTTTGA+TGG | - | tig0023078:36055-36074 | None:intergenic | 40.0% |
!!! | CTAGCATTTTTTCTCTCTGC+AGG | + | tig0023078:35158-35177 | Msa1404570:CDS | 40.0% |
!!! | CCTAGTACTTTTTCTGGTTG+TGG | - | tig0023078:35368-35387 | None:intergenic | 40.0% |
!! | CCACAACCAGAAAAAGTACT+AGG | + | tig0023078:35365-35384 | Msa1404570:CDS | 40.0% |
!!! | AGAAGCCCTAGTACTTTTTC+TGG | - | tig0023078:35374-35393 | None:intergenic | 40.0% |
!! | GCGAAAGCTTTAAGAATCTG+TGG | - | tig0023078:35440-35459 | None:intergenic | 40.0% |
ATCCACAACAAGCACTTCAA+TGG | + | tig0023078:35519-35538 | Msa1404570:CDS | 40.0% | |
TCCACAACAAGCACTTCAAT+GGG | + | tig0023078:35520-35539 | Msa1404570:CDS | 40.0% | |
ATTCCAGTGATCTTTGTGTC+TGG | - | tig0023078:35572-35591 | None:intergenic | 40.0% | |
! | TGCTCTAGTTCAGTTAGGTT+TGG | + | tig0023078:35673-35692 | Msa1404570:CDS | 40.0% |
! | GGATATGCATTGACCCAAAA+GGG | - | tig0023078:35836-35855 | None:intergenic | 40.0% |
! | AGGATATGCATTGACCCAAA+AGG | - | tig0023078:35837-35856 | None:intergenic | 40.0% |
! | TCATCAGAGTCACCTTTTGA+TGG | - | tig0023078:36055-36074 | None:intergenic | 40.0% |
GATGATCTCCACGTCTGAAT+TGG | - | tig0023078:35462-35481 | None:intergenic | 45.0% | |
! | ACCCATTGAAGTGCTTGTTG+TGG | - | tig0023078:35524-35543 | None:intergenic | 45.0% |
CTTCCAGACACAAAGATCAC+TGG | + | tig0023078:35566-35585 | Msa1404570:CDS | 45.0% | |
TGAAACTACCAGCTGAAGGA+GGG | - | tig0023078:35754-35773 | None:intergenic | 45.0% | |
!! | CTTCTGAAACTACCAGCTGA+AGG | - | tig0023078:35758-35777 | None:intergenic | 45.0% |
GGATCAACCATTCCTTGGTT+AGG | - | tig0023078:35917-35936 | None:intergenic | 45.0% | |
!! | TTAGGGTTTCTGAGACTGGT+TGG | + | tig0023078:36029-36048 | Msa1404570:CDS | 45.0% |
AGAATGGACCAACCTCAGAA+AGG | + | tig0023078:36212-36231 | Msa1404570:CDS | 45.0% | |
!! | CCATAGTTCCTTTCTGAGGT+TGG | - | tig0023078:36223-36242 | None:intergenic | 45.0% |
CCAACCTCAGAAAGGAACTA+TGG | + | tig0023078:36220-36239 | Msa1404570:CDS | 45.0% | |
GATGATCTCCACGTCTGAAT+TGG | - | tig0023078:35462-35481 | None:intergenic | 45.0% | |
! | ACCCATTGAAGTGCTTGTTG+TGG | - | tig0023078:35524-35543 | None:intergenic | 45.0% |
CTTCCAGACACAAAGATCAC+TGG | + | tig0023078:35566-35585 | Msa1404570:CDS | 45.0% | |
TGAAACTACCAGCTGAAGGA+GGG | - | tig0023078:35754-35773 | None:intergenic | 45.0% | |
!! | CTTCTGAAACTACCAGCTGA+AGG | - | tig0023078:35758-35777 | None:intergenic | 45.0% |
GGATCAACCATTCCTTGGTT+AGG | - | tig0023078:35917-35936 | None:intergenic | 45.0% | |
!! | TTAGGGTTTCTGAGACTGGT+TGG | + | tig0023078:36029-36048 | Msa1404570:CDS | 45.0% |
AGAATGGACCAACCTCAGAA+AGG | + | tig0023078:36212-36231 | Msa1404570:CDS | 45.0% | |
!! | CCATAGTTCCTTTCTGAGGT+TGG | - | tig0023078:36223-36242 | None:intergenic | 45.0% |
CCAACCTCAGAAAGGAACTA+TGG | + | tig0023078:36220-36239 | Msa1404570:CDS | 45.0% | |
TTCGGACGTGTTGCGTCATT+TGG | + | tig0023078:35311-35330 | Msa1404570:CDS | 50.0% | |
AGCTTTCGCCAATTCAGACG+TGG | + | tig0023078:35451-35470 | Msa1404570:CDS | 50.0% | |
GAATCTTACCCTCCTTCAGC+TGG | + | tig0023078:35743-35762 | Msa1404570:CDS | 50.0% | |
CTGAAACTACCAGCTGAAGG+AGG | - | tig0023078:35755-35774 | None:intergenic | 50.0% | |
!! | GAGGTTAGGGTTTCTGAGAC+TGG | + | tig0023078:36025-36044 | Msa1404570:CDS | 50.0% |
! | GAGACTGGTTGGCCATCAAA+AGG | + | tig0023078:36040-36059 | Msa1404570:CDS | 50.0% |
TCTCTTACCTCTTCTGCCAC+TGG | + | tig0023078:36325-36344 | Msa1404570:CDS | 50.0% | |
CTCTTACCTCTTCTGCCACT+GGG | + | tig0023078:36326-36345 | Msa1404570:CDS | 50.0% | |
TTCGGACGTGTTGCGTCATT+TGG | + | tig0023078:35311-35330 | Msa1404570:CDS | 50.0% | |
AGCTTTCGCCAATTCAGACG+TGG | + | tig0023078:35451-35470 | Msa1404570:CDS | 50.0% | |
GAATCTTACCCTCCTTCAGC+TGG | + | tig0023078:35743-35762 | Msa1404570:CDS | 50.0% | |
CTGAAACTACCAGCTGAAGG+AGG | - | tig0023078:35755-35774 | None:intergenic | 50.0% | |
!! | GAGGTTAGGGTTTCTGAGAC+TGG | + | tig0023078:36025-36044 | Msa1404570:CDS | 50.0% |
! | GAGACTGGTTGGCCATCAAA+AGG | + | tig0023078:36040-36059 | Msa1404570:CDS | 50.0% |
TCTCTTACCTCTTCTGCCAC+TGG | + | tig0023078:36325-36344 | Msa1404570:CDS | 50.0% | |
CTCTTACCTCTTCTGCCACT+GGG | + | tig0023078:36326-36345 | Msa1404570:CDS | 50.0% | |
CTTTGTCCCAGTGGCAGAAG+AGG | - | tig0023078:36335-36354 | None:intergenic | 55.0% | |
CTCTTCTGCCACTGGGACAA+AGG | + | tig0023078:36333-36352 | Msa1404570:CDS | 55.0% | |
CTTTGTCCCAGTGGCAGAAG+AGG | - | tig0023078:36335-36354 | None:intergenic | 55.0% | |
CTCTTCTGCCACTGGGACAA+AGG | + | tig0023078:36333-36352 | Msa1404570:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0023078 | gene | 34999 | 36426 | 34999 | ID=Msa1404570;Name=Msa1404570 |
tig0023078 | mRNA | 34999 | 36426 | 34999 | ID=Msa1404570-mRNA-1;Parent=Msa1404570;Name=Msa1404570-mRNA-1;_AED=0.08;_eAED=0.12;_QI=0|1|0|1|1|1|2|0|435 |
tig0023078 | exon | 34999 | 35179 | 34999 | ID=Msa1404570-mRNA-1:exon:23701;Parent=Msa1404570-mRNA-1 |
tig0023078 | exon | 35300 | 36426 | 35300 | ID=Msa1404570-mRNA-1:exon:23702;Parent=Msa1404570-mRNA-1 |
tig0023078 | CDS | 34999 | 35179 | 34999 | ID=Msa1404570-mRNA-1:cds;Parent=Msa1404570-mRNA-1 |
tig0023078 | CDS | 35300 | 36426 | 35300 | ID=Msa1404570-mRNA-1:cds;Parent=Msa1404570-mRNA-1 |
Gene Sequence |
Protein sequence |