Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405960 | XP_003602444.2 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405960 | sp|Q96AP4|ZUP1_HUMAN | 34.386 | 285 | 148 | 9 | 89 | 371 | 318 | 565 | 1.66e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405960 | G7J9Q3 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0438760 | Msa1405960 | 0.903556 | 3.071237e-79 | -8.615850e-47 |
| Msa0472640 | Msa1405960 | 0.977027 | 5.758452e-143 | -8.615850e-47 |
| Msa0473120 | Msa1405960 | 0.957091 | 6.252346e-115 | -8.615850e-47 |
| Msa1170690 | Msa1405960 | 0.971230 | 7.731502e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405960 | MtrunA17_Chr3g0128361 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Msa1405960 | MtrunA17_Chr5g0428821 | 58.371 | 442 | 124 | 5 | 1 | 382 | 3 | 444 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405960 | AT5G24680.1 | 48.030 | 406 | 172 | 10 | 7 | 382 | 3 | 399 | 1.15e-110 | 330 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTCTTCTTTGAATTAT+AGG | 0.174767 | tig0023174:+81131 | Msa1405960:CDS |
| TCGGGGCTTGAAGCAGTTTC+TGG | 0.229564 | tig0023174:+79782 | Msa1405960:CDS |
| ATCATATAATCTCCTAGTTT+TGG | 0.229650 | tig0023174:+80671 | Msa1405960:CDS |
| CAACATGCTGCTGACCAAAT+TGG | 0.292474 | tig0023174:-80468 | None:intergenic |
| GATGAAAACGCAATCCAATT+TGG | 0.299607 | tig0023174:+80454 | Msa1405960:CDS |
| ACAACAGATTGGGATTCTTT+AGG | 0.304442 | tig0023174:-80313 | None:intergenic |
| AGATCACTAAAGCAGAAAAT+TGG | 0.308220 | tig0023174:+80909 | Msa1405960:CDS |
| TTGTTTACGGATCAACAAAA+TGG | 0.312701 | tig0023174:+80221 | Msa1405960:CDS |
| CGGGCAAGAATAGTTGATTT+TGG | 0.313545 | tig0023174:+80289 | Msa1405960:CDS |
| CAATTGGAACATGTTGTTTA+CGG | 0.316851 | tig0023174:+80208 | Msa1405960:CDS |
| TCCTCCTCGCCAGCAATTCC+AGG | 0.341681 | tig0023174:-81084 | None:intergenic |
| GGCCTTATTGAGAAATTGTT+TGG | 0.348733 | tig0023174:+79934 | Msa1405960:CDS |
| CTCTGCAATGAGGGGATATC+AGG | 0.349373 | tig0023174:-80136 | None:intergenic |
| CTCCAAACAATTTCTCAATA+AGG | 0.353127 | tig0023174:-79936 | None:intergenic |
| CTTGAGATTGCTTGGGAAAA+GGG | 0.361603 | tig0023174:+80163 | Msa1405960:CDS |
| GTGGCTTCTTCAGTGTATTC+CGG | 0.362191 | tig0023174:-80956 | None:intergenic |
| AACTCCATTCTGTTGATGAT+TGG | 0.367977 | tig0023174:-80646 | None:intergenic |
| TGATCCTGTGCTGCTCCAAC+AGG | 0.376439 | tig0023174:+78755 | Msa1405960:CDS |
| CAATTCTGAGGATGCTGGAT+GGG | 0.379701 | tig0023174:+80018 | Msa1405960:CDS |
| TGCCCCAGGAGCTGCTCAAT+TGG | 0.383496 | tig0023174:+80192 | Msa1405960:CDS |
| AAAGAATCCCAATCTGTTGT+AGG | 0.384082 | tig0023174:+80316 | Msa1405960:CDS |
| GAGGATGCTGGATGGGGTTG+TGG | 0.386116 | tig0023174:+80025 | Msa1405960:CDS |
| CAAAGTTGAAGCGGGTTTGA+TGG | 0.393516 | tig0023174:+79913 | Msa1405960:CDS |
| GCTTGAGATTGCTTGGGAAA+AGG | 0.396568 | tig0023174:+80162 | Msa1405960:CDS |
| TACGTTGATCCTGGAATTGC+TGG | 0.403330 | tig0023174:+81075 | Msa1405960:CDS |
| AACAAAACCTCTCTTGCTTC+CGG | 0.406451 | tig0023174:-80094 | None:intergenic |
| GAACAATCAGTCAGTGGCTC+GGG | 0.407768 | tig0023174:+79764 | Msa1405960:CDS |
| AAAACATGGATCCGGATTCA+TGG | 0.416705 | tig0023174:+78553 | None:intergenic |
| AGATAATGGGGAATGCAAAA+TGG | 0.422905 | tig0023174:+79841 | Msa1405960:CDS |
| GGTGAGACTAGTAGAGATAA+TGG | 0.423295 | tig0023174:+79827 | Msa1405960:CDS |
| GGCAGACAAATTACGTGAGC+AGG | 0.434535 | tig0023174:-80696 | None:intergenic |
| GTGAGACTAGTAGAGATAAT+GGG | 0.435686 | tig0023174:+79828 | Msa1405960:CDS |
| TGTTCCAATTGAGCAGCTCC+TGG | 0.440162 | tig0023174:-80196 | None:intergenic |
| CACTTGTTCCTACAACAGAT+TGG | 0.447381 | tig0023174:-80324 | None:intergenic |
| ACTTGTTCCTACAACAGATT+GGG | 0.448713 | tig0023174:-80323 | None:intergenic |
| CAGTTGTGTTACGTTGATCC+TGG | 0.449229 | tig0023174:+81066 | Msa1405960:intron |
| TTTCTGGAGATTGTAACAAT+TGG | 0.454219 | tig0023174:+79798 | Msa1405960:CDS |
| CATCCTCAGAATTGAGGCTC+TGG | 0.457496 | tig0023174:-80009 | None:intergenic |
| TTCCCTCTTCTCAGCTTCAA+TGG | 0.461872 | tig0023174:+78604 | Msa1405960:CDS |
| GGGAACTGGTAAATCACAAA+AGG | 0.466526 | tig0023174:-78586 | None:intergenic |
| CCTTTGTACTTTCAACATGA+TGG | 0.472319 | tig0023174:+80594 | Msa1405960:CDS |
| CTGGAAATGATCAATGTAAC+CGG | 0.474736 | tig0023174:-79990 | None:intergenic |
| CGTGAGCAGGGTCCAAAACT+AGG | 0.476174 | tig0023174:-80683 | None:intergenic |
| AGCCTCAATTCTGAGGATGC+TGG | 0.481179 | tig0023174:+80013 | Msa1405960:CDS |
| TGAACCTGTTGGAGCAGCAC+AGG | 0.482656 | tig0023174:-78759 | None:intergenic |
| GGACACGTGCTCCATGAATC+CGG | 0.486259 | tig0023174:-78564 | None:intergenic |
| AGAGATGGCTTGAGATTGCT+TGG | 0.487071 | tig0023174:+80155 | Msa1405960:CDS |
| ATGCTGGATGGGGTTGTGGA+TGG | 0.501534 | tig0023174:+80029 | Msa1405960:CDS |
| AATTCTGAGGATGCTGGATG+GGG | 0.505505 | tig0023174:+80019 | Msa1405960:CDS |
| AATTGCTGGCGAGGAGGAGA+TGG | 0.507256 | tig0023174:+81089 | Msa1405960:CDS |
| TCAAGCCATCTCTGCAATGA+GGG | 0.517092 | tig0023174:-80145 | None:intergenic |
| TGTCTGTAAACCAATTAAGC+AGG | 0.517724 | tig0023174:-79876 | None:intergenic |
| GTTCCAATTGAGCAGCTCCT+GGG | 0.517934 | tig0023174:-80195 | None:intergenic |
| TGAAGCTGAGAAGAGGGAAC+TGG | 0.518833 | tig0023174:-78600 | None:intergenic |
| CAAGAAAGAAAACATGGATC+CGG | 0.520196 | tig0023174:+78545 | None:intergenic |
| GGTCACTCGAGAACAATAGT+TGG | 0.526319 | tig0023174:+80615 | Msa1405960:CDS |
| ATATCCCCTCATTGCAGAGA+TGG | 0.533952 | tig0023174:+80140 | Msa1405960:CDS |
| GAGATTGTAACAATTGGCAC+GGG | 0.536486 | tig0023174:+79804 | Msa1405960:CDS |
| CAAGCCAATCATCAACAGAA+TGG | 0.540472 | tig0023174:+80642 | Msa1405960:CDS |
| AACTTCTACAAAGTTGAAGC+GGG | 0.540979 | tig0023174:+79905 | Msa1405960:CDS |
| CTCAAGCCATCTCTGCAATG+AGG | 0.542374 | tig0023174:-80146 | None:intergenic |
| TGAACAATCAGTCAGTGGCT+CGG | 0.544843 | tig0023174:+79763 | Msa1405960:CDS |
| GAAAAGGGCTTTGATGCCCC+AGG | 0.553672 | tig0023174:+80178 | Msa1405960:CDS |
| ATCCAGCATCCTCAGAATTG+AGG | 0.561074 | tig0023174:-80015 | None:intergenic |
| TGAGACTAGTAGAGATAATG+GGG | 0.563549 | tig0023174:+79829 | Msa1405960:CDS |
| ACTGAAGAAGCCACAATACC+AGG | 0.565663 | tig0023174:+80965 | Msa1405960:CDS |
| TCAATTCTGAGGATGCTGGA+TGG | 0.569675 | tig0023174:+80017 | Msa1405960:CDS |
| GGAGATTGTAACAATTGGCA+CGG | 0.570231 | tig0023174:+79803 | Msa1405960:CDS |
| AGAAGTAAGACCTGGTATTG+TGG | 0.570767 | tig0023174:-80975 | None:intergenic |
| TACCATTGAAGCTGAGAAGA+GGG | 0.572663 | tig0023174:-78606 | None:intergenic |
| ACAGAGACCGGAAGCAAGAG+AGG | 0.575871 | tig0023174:+80087 | Msa1405960:CDS |
| GGAACTGGTAAATCACAAAA+GGG | 0.580231 | tig0023174:-78585 | None:intergenic |
| TTTCCAGAGCCTCAATTCTG+AGG | 0.581276 | tig0023174:+80006 | Msa1405960:CDS |
| AGGATCATGAAAATGAGCAT+TGG | 0.590530 | tig0023174:-78739 | None:intergenic |
| TTCCAATTGAGCAGCTCCTG+GGG | 0.596703 | tig0023174:-80194 | None:intergenic |
| TCACTTACTAGCACAGAGAC+CGG | 0.600965 | tig0023174:+80075 | Msa1405960:CDS |
| CACTAAAGCAGAAAATTGGA+TGG | 0.601257 | tig0023174:+80913 | Msa1405960:CDS |
| CAACTTCTACAAAGTTGAAG+CGG | 0.601423 | tig0023174:+79904 | Msa1405960:CDS |
| GCAGACAAATTACGTGAGCA+GGG | 0.605295 | tig0023174:-80695 | None:intergenic |
| TCCTGGAATTGCTGGCGAGG+AGG | 0.610858 | tig0023174:+81083 | Msa1405960:CDS |
| GAGATGGCTTGAGATTGCTT+GGG | 0.611796 | tig0023174:+80156 | Msa1405960:CDS |
| AAGTTCTCATGAATTTCGTG+TGG | 0.614055 | tig0023174:+80419 | Msa1405960:CDS |
| TACGGATCAACAAAATGGAT+AGG | 0.621024 | tig0023174:+80226 | Msa1405960:CDS |
| TGATCCTGGAATTGCTGGCG+AGG | 0.622185 | tig0023174:+81080 | Msa1405960:CDS |
| CAAGCCATCTCTGCAATGAG+GGG | 0.632641 | tig0023174:-80144 | None:intergenic |
| AACAATCAGTCAGTGGCTCG+GGG | 0.634924 | tig0023174:+79765 | Msa1405960:CDS |
| GTACCATTGAAGCTGAGAAG+AGG | 0.635253 | tig0023174:-78607 | None:intergenic |
| CAGAGTGAACAATCAGTCAG+TGG | 0.650150 | tig0023174:+79758 | Msa1405960:intron |
| CCATCATGTTGAAAGTACAA+AGG | 0.685122 | tig0023174:-80594 | None:intergenic |
| GATTGTAACAATTGGCACGG+GGG | 0.724337 | tig0023174:+79806 | Msa1405960:CDS |
| AGATTGTAACAATTGGCACG+GGG | 0.729653 | tig0023174:+79805 | Msa1405960:CDS |
| AACAAGTGTTGATAACACCG+TGG | 0.773466 | tig0023174:+80339 | Msa1405960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATAAAAAGTA+TGG | - | tig0023174:80868-80887 | None:intergenic | 10.0% |
| !! | CAACTTGTATTTAAATATTA+CGG | - | tig0023174:79108-79127 | None:intergenic | 15.0% |
| !! | ATTGTTAAAGATAATCATAA+TGG | - | tig0023174:79565-79584 | None:intergenic | 15.0% |
| !! | AACTAAATATTAAAAGAGTA+AGG | - | tig0023174:80720-80739 | None:intergenic | 15.0% |
| !! | ATAACTTATACATAAACACT+TGG | + | tig0023174:78964-78983 | Msa1405960:intron | 20.0% |
| !! | TTATTATCACTGAAAACTTA+AGG | - | tig0023174:79143-79162 | None:intergenic | 20.0% |
| !! | CAGTAAATTTAAAAAAAGTG+AGG | + | tig0023174:80390-80409 | Msa1405960:CDS | 20.0% |
| !!! | TTAAATTTTGAAAGCTTTGT+CGG | + | tig0023174:80566-80585 | Msa1405960:intron | 20.0% |
| !! | AGTTTTCAGTGATAATAAGA+CGG | + | tig0023174:79145-79164 | Msa1405960:intron | 25.0% |
| ! | CAAAACAGTTTATCCAAATA+AGG | + | tig0023174:79306-79325 | Msa1405960:intron | 25.0% |
| ! | AAATTACTGAGTGATAGTTT+AGG | - | tig0023174:79354-79373 | None:intergenic | 25.0% |
| ! | TTCAAAATAGGAGAAAATGA+TGG | - | tig0023174:79425-79444 | None:intergenic | 25.0% |
| !!! | GCTATTTTCAGTTTCAAAAT+AGG | - | tig0023174:79437-79456 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAACGGAAAA+GGG | - | tig0023174:79643-79662 | None:intergenic | 25.0% |
| ! | AACTTATAATCTAACGGAAA+AGG | - | tig0023174:79644-79663 | None:intergenic | 25.0% |
| ! | CATCAGAACTTATAATCTAA+CGG | - | tig0023174:79650-79669 | None:intergenic | 25.0% |
| ! | TTTATTTGCATATTCAGATG+AGG | + | tig0023174:79689-79708 | Msa1405960:intron | 25.0% |
| !!! | AATTCAAAAAGCATTTTGTC+CGG | + | tig0023174:79971-79990 | Msa1405960:CDS | 25.0% |
| !!! | ATCATTTCTTGTTTTATCCA+CGG | - | tig0023174:80359-80378 | None:intergenic | 25.0% |
| !! | ATCATATAATCTCCTAGTTT+TGG | + | tig0023174:80671-80690 | Msa1405960:CDS | 25.0% |
| ! | AATTGAAATTACAATGAGTG+CGG | - | tig0023174:80759-80778 | None:intergenic | 25.0% |
| ! | ATGGCAAAAACTCATAAAAA+AGG | + | tig0023174:80932-80951 | Msa1405960:CDS | 25.0% |
| ! | TGGCAAAAACTCATAAAAAA+GGG | + | tig0023174:80933-80952 | Msa1405960:CDS | 25.0% |
| ! | TGATAAATGAGTATGTTTGA+CGG | + | tig0023174:81029-81048 | Msa1405960:intron | 25.0% |
| AATTGAGGAAGAAGAAGAAA+GGG | - | tig0023174:78656-78675 | None:intergenic | 30.0% | |
| ATCTTTCTCCAATAACTGAT+TGG | + | tig0023174:78781-78800 | Msa1405960:intron | 30.0% | |
| AATCCAATCCAATCAGTTAT+TGG | - | tig0023174:78792-78811 | None:intergenic | 30.0% | |
| TAAGCTGAAAACAACTAATG+AGG | - | tig0023174:78883-78902 | None:intergenic | 30.0% | |
| AGTGATAATAAGACGGAAAA+TGG | + | tig0023174:79152-79171 | Msa1405960:intron | 30.0% | |
| TTAATTATAGTCAGAGACGT+AGG | + | tig0023174:79188-79207 | Msa1405960:intron | 30.0% | |
| GTTTATCCAAATAAGGCTTA+AGG | + | tig0023174:79313-79332 | Msa1405960:intron | 30.0% | |
| !! | TCAAAACCTTAAGCCTTATT+TGG | - | tig0023174:79322-79341 | None:intergenic | 30.0% |
| ! | TTTCTGGAGATTGTAACAAT+TGG | + | tig0023174:79798-79817 | Msa1405960:CDS | 30.0% |
| GAAAAAATCTCCTGCTTAAT+TGG | + | tig0023174:79866-79885 | Msa1405960:CDS | 30.0% | |
| CTCCAAACAATTTCTCAATA+AGG | - | tig0023174:79939-79958 | None:intergenic | 30.0% | |
| ! | CAATTGGAACATGTTGTTTA+CGG | + | tig0023174:80208-80227 | Msa1405960:CDS | 30.0% |
| TTGTTTACGGATCAACAAAA+TGG | + | tig0023174:80221-80240 | Msa1405960:CDS | 30.0% | |
| AAGAAACAAAATTGTCTGTG+TGG | - | tig0023174:80541-80560 | None:intergenic | 30.0% | |
| ACTTGAAATGATGCATAATC+AGG | - | tig0023174:80844-80863 | None:intergenic | 30.0% | |
| AGATCACTAAAGCAGAAAAT+TGG | + | tig0023174:80909-80928 | Msa1405960:CDS | 30.0% | |
| AAAAACTCATAAAAAAGGGC+CGG | + | tig0023174:80937-80956 | Msa1405960:CDS | 30.0% | |
| TTGTTAAAAGAAGTAAGACC+TGG | - | tig0023174:80986-81005 | None:intergenic | 30.0% | |
| GGAACTGGTAAATCACAAAA+GGG | - | tig0023174:78588-78607 | None:intergenic | 35.0% | |
| CAATTGAGGAAGAAGAAGAA+AGG | - | tig0023174:78657-78676 | None:intergenic | 35.0% | |
| ATCATCATCGATGTCAATTG+AGG | - | tig0023174:78671-78690 | None:intergenic | 35.0% | |
| TTCTACATACATGTACATGC+AGG | + | tig0023174:78712-78731 | Msa1405960:intron | 35.0% | |
| AGGATCATGAAAATGAGCAT+TGG | - | tig0023174:78742-78761 | None:intergenic | 35.0% | |
| TCTCCAATAACTGATTGGAT+TGG | + | tig0023174:78786-78805 | Msa1405960:intron | 35.0% | |
| AAACACGTGATTAAACGTGT+TGG | + | tig0023174:79000-79019 | Msa1405960:intron | 35.0% | |
| AACACGTGATTAAACGTGTT+GGG | + | tig0023174:79001-79020 | Msa1405960:intron | 35.0% | |
| ! | TCATGAGCATTGTTGTAAGT+TGG | + | tig0023174:79081-79100 | Msa1405960:intron | 35.0% |
| GTGAGACTAGTAGAGATAAT+GGG | + | tig0023174:79828-79847 | Msa1405960:CDS | 35.0% | |
| TGAGACTAGTAGAGATAATG+GGG | + | tig0023174:79829-79848 | Msa1405960:CDS | 35.0% | |
| !! | AGATAATGGGGAATGCAAAA+TGG | + | tig0023174:79841-79860 | Msa1405960:CDS | 35.0% |
| TGTCTGTAAACCAATTAAGC+AGG | - | tig0023174:79879-79898 | None:intergenic | 35.0% | |
| CAACTTCTACAAAGTTGAAG+CGG | + | tig0023174:79904-79923 | Msa1405960:CDS | 35.0% | |
| AACTTCTACAAAGTTGAAGC+GGG | + | tig0023174:79905-79924 | Msa1405960:CDS | 35.0% | |
| !! | GGCCTTATTGAGAAATTGTT+TGG | + | tig0023174:79934-79953 | Msa1405960:CDS | 35.0% |
| CTGGAAATGATCAATGTAAC+CGG | - | tig0023174:79993-80012 | None:intergenic | 35.0% | |
| TACGGATCAACAAAATGGAT+AGG | + | tig0023174:80226-80245 | Msa1405960:CDS | 35.0% | |
| ACAACAGATTGGGATTCTTT+AGG | - | tig0023174:80316-80335 | None:intergenic | 35.0% | |
| AAAGAATCCCAATCTGTTGT+AGG | + | tig0023174:80316-80335 | Msa1405960:CDS | 35.0% | |
| ACTTGTTCCTACAACAGATT+GGG | - | tig0023174:80326-80345 | None:intergenic | 35.0% | |
| AAGTTCTCATGAATTTCGTG+TGG | + | tig0023174:80419-80438 | Msa1405960:CDS | 35.0% | |
| GATGAAAACGCAATCCAATT+TGG | + | tig0023174:80454-80473 | Msa1405960:CDS | 35.0% | |
| ! | CCATCATGTTGAAAGTACAA+AGG | - | tig0023174:80597-80616 | None:intergenic | 35.0% |
| CCTTTGTACTTTCAACATGA+TGG | + | tig0023174:80594-80613 | Msa1405960:CDS | 35.0% | |
| !! | AACTCCATTCTGTTGATGAT+TGG | - | tig0023174:80649-80668 | None:intergenic | 35.0% |
| CACTAAAGCAGAAAATTGGA+TGG | + | tig0023174:80913-80932 | Msa1405960:CDS | 35.0% | |
| GGGAACTGGTAAATCACAAA+AGG | - | tig0023174:78589-78608 | None:intergenic | 40.0% | |
| TACCATTGAAGCTGAGAAGA+GGG | - | tig0023174:78609-78628 | None:intergenic | 40.0% | |
| TTGGAGAAAGATGAACCTGT+TGG | - | tig0023174:78773-78792 | None:intergenic | 40.0% | |
| GTGATTAAACGTGTTGGGTA+TGG | + | tig0023174:79006-79025 | Msa1405960:intron | 40.0% | |
| TTAACGCAACTCAGTACAGA+AGG | - | tig0023174:79280-79299 | None:intergenic | 40.0% | |
| GGAGATTGTAACAATTGGCA+CGG | + | tig0023174:79803-79822 | Msa1405960:CDS | 40.0% | |
| GAGATTGTAACAATTGGCAC+GGG | + | tig0023174:79804-79823 | Msa1405960:CDS | 40.0% | |
| AGATTGTAACAATTGGCACG+GGG | + | tig0023174:79805-79824 | Msa1405960:CDS | 40.0% | |
| GGTGAGACTAGTAGAGATAA+TGG | + | tig0023174:79827-79846 | Msa1405960:CDS | 40.0% | |
| AACAAAACCTCTCTTGCTTC+CGG | - | tig0023174:80097-80116 | None:intergenic | 40.0% | |
| !!! | GAAGCAAGAGAGGTTTTGTT+TGG | + | tig0023174:80097-80116 | Msa1405960:CDS | 40.0% |
| !!! | AGAGGTTTTGTTTGGTGGTT+CGG | + | tig0023174:80105-80124 | Msa1405960:CDS | 40.0% |
| CTTGAGATTGCTTGGGAAAA+GGG | + | tig0023174:80163-80182 | Msa1405960:CDS | 40.0% | |
| ! | TCTTGCGTTCTTTTGCTCTT+CGG | + | tig0023174:80269-80288 | Msa1405960:CDS | 40.0% |
| !! | CGGGCAAGAATAGTTGATTT+TGG | + | tig0023174:80289-80308 | Msa1405960:CDS | 40.0% |
| CACTTGTTCCTACAACAGAT+TGG | - | tig0023174:80327-80346 | None:intergenic | 40.0% | |
| !! | AACAAGTGTTGATAACACCG+TGG | + | tig0023174:80339-80358 | Msa1405960:CDS | 40.0% |
| TGATCAGTGAGAAAACGTGA+GGG | + | tig0023174:80491-80510 | Msa1405960:intron | 40.0% | |
| !! | TTTTGAAAGCTTTGTCGGAC+AGG | + | tig0023174:80571-80590 | Msa1405960:intron | 40.0% |
| CAAGCCAATCATCAACAGAA+TGG | + | tig0023174:80642-80661 | Msa1405960:CDS | 40.0% | |
| AGAAGTAAGACCTGGTATTG+TGG | - | tig0023174:80978-80997 | None:intergenic | 40.0% | |
| TTCCCTCTTCTCAGCTTCAA+TGG | + | tig0023174:78604-78623 | Msa1405960:CDS | 45.0% | |
| GTACCATTGAAGCTGAGAAG+AGG | - | tig0023174:78610-78629 | None:intergenic | 45.0% | |
| ACACAACCCTTCCCACTTAT+CGG | - | tig0023174:79042-79061 | None:intergenic | 45.0% | |
| TTGTGTGATGGCTCATAGGT+AGG | + | tig0023174:79056-79075 | Msa1405960:intron | 45.0% | |
| TGTGTGATGGCTCATAGGTA+GGG | + | tig0023174:79057-79076 | Msa1405960:intron | 45.0% | |
| AGAAGATGCAAGCGCAAGTT+GGG | - | tig0023174:79598-79617 | None:intergenic | 45.0% | |
| AAGAAGATGCAAGCGCAAGT+TGG | - | tig0023174:79599-79618 | None:intergenic | 45.0% | |
| CAGAGTGAACAATCAGTCAG+TGG | + | tig0023174:79758-79777 | Msa1405960:intron | 45.0% | |
| TGAACAATCAGTCAGTGGCT+CGG | + | tig0023174:79763-79782 | Msa1405960:CDS | 45.0% | |
| GATTGTAACAATTGGCACGG+GGG | + | tig0023174:79806-79825 | Msa1405960:CDS | 45.0% | |
| ! | CAAAGTTGAAGCGGGTTTGA+TGG | + | tig0023174:79913-79932 | Msa1405960:CDS | 45.0% |
| TTTCCAGAGCCTCAATTCTG+AGG | + | tig0023174:80006-80025 | Msa1405960:CDS | 45.0% | |
| ATCCAGCATCCTCAGAATTG+AGG | - | tig0023174:80018-80037 | None:intergenic | 45.0% | |
| ! | TCAATTCTGAGGATGCTGGA+TGG | + | tig0023174:80017-80036 | Msa1405960:CDS | 45.0% |
| ! | CAATTCTGAGGATGCTGGAT+GGG | + | tig0023174:80018-80037 | Msa1405960:CDS | 45.0% |
| ! | AATTCTGAGGATGCTGGATG+GGG | + | tig0023174:80019-80038 | Msa1405960:CDS | 45.0% |
| TCACTTACTAGCACAGAGAC+CGG | + | tig0023174:80075-80094 | Msa1405960:CDS | 45.0% | |
| !!! | GCAAGAGAGGTTTTGTTTGG+TGG | + | tig0023174:80100-80119 | Msa1405960:CDS | 45.0% |
| !!! | GAGGTTTTGTTTGGTGGTTC+GGG | + | tig0023174:80106-80125 | Msa1405960:CDS | 45.0% |
| ATATCCCCTCATTGCAGAGA+TGG | + | tig0023174:80140-80159 | Msa1405960:CDS | 45.0% | |
| TCAAGCCATCTCTGCAATGA+GGG | - | tig0023174:80148-80167 | None:intergenic | 45.0% | |
| AGAGATGGCTTGAGATTGCT+TGG | + | tig0023174:80155-80174 | Msa1405960:CDS | 45.0% | |
| GAGATGGCTTGAGATTGCTT+GGG | + | tig0023174:80156-80175 | Msa1405960:CDS | 45.0% | |
| GCTTGAGATTGCTTGGGAAA+AGG | + | tig0023174:80162-80181 | Msa1405960:CDS | 45.0% | |
| ! | CTTGCGTTCTTTTGCTCTTC+GGG | + | tig0023174:80270-80289 | Msa1405960:CDS | 45.0% |
| CAACATGCTGCTGACCAAAT+TGG | - | tig0023174:80471-80490 | None:intergenic | 45.0% | |
| GTGATCAGTGAGAAAACGTG+AGG | + | tig0023174:80490-80509 | Msa1405960:intron | 45.0% | |
| GGTCACTCGAGAACAATAGT+TGG | + | tig0023174:80615-80634 | Msa1405960:CDS | 45.0% | |
| GCAGACAAATTACGTGAGCA+GGG | - | tig0023174:80698-80717 | None:intergenic | 45.0% | |
| TTACAATGAGTGCGGAACTG+CGG | - | tig0023174:80751-80770 | None:intergenic | 45.0% | |
| GTGGCTTCTTCAGTGTATTC+CGG | - | tig0023174:80959-80978 | None:intergenic | 45.0% | |
| ACTGAAGAAGCCACAATACC+AGG | + | tig0023174:80965-80984 | Msa1405960:CDS | 45.0% | |
| CAGTTGTGTTACGTTGATCC+TGG | + | tig0023174:81066-81085 | Msa1405960:intron | 45.0% | |
| TACGTTGATCCTGGAATTGC+TGG | + | tig0023174:81075-81094 | Msa1405960:CDS | 45.0% | |
| TGAAGCTGAGAAGAGGGAAC+TGG | - | tig0023174:78603-78622 | None:intergenic | 50.0% | |
| !! | TAGGTGCCGATAAGTGGGAA+GGG | + | tig0023174:79033-79052 | Msa1405960:intron | 50.0% |
| AAGTGGGAAGGGTTGTGTGA+TGG | + | tig0023174:79044-79063 | Msa1405960:intron | 50.0% | |
| AGGGTTGTGTGATGGCTCAT+AGG | + | tig0023174:79052-79071 | Msa1405960:intron | 50.0% | |
| GAACAATCAGTCAGTGGCTC+GGG | + | tig0023174:79764-79783 | Msa1405960:CDS | 50.0% | |
| AACAATCAGTCAGTGGCTCG+GGG | + | tig0023174:79765-79784 | Msa1405960:CDS | 50.0% | |
| CATCCTCAGAATTGAGGCTC+TGG | - | tig0023174:80012-80031 | None:intergenic | 50.0% | |
| ! | AGCCTCAATTCTGAGGATGC+TGG | + | tig0023174:80013-80032 | Msa1405960:CDS | 50.0% |
| CTCTGCAATGAGGGGATATC+AGG | - | tig0023174:80139-80158 | None:intergenic | 50.0% | |
| CAAGCCATCTCTGCAATGAG+GGG | - | tig0023174:80147-80166 | None:intergenic | 50.0% | |
| CTCAAGCCATCTCTGCAATG+AGG | - | tig0023174:80149-80168 | None:intergenic | 50.0% | |
| TTCCAATTGAGCAGCTCCTG+GGG | - | tig0023174:80197-80216 | None:intergenic | 50.0% | |
| GTTCCAATTGAGCAGCTCCT+GGG | - | tig0023174:80198-80217 | None:intergenic | 50.0% | |
| TGTTCCAATTGAGCAGCTCC+TGG | - | tig0023174:80199-80218 | None:intergenic | 50.0% | |
| GGCAGACAAATTACGTGAGC+AGG | - | tig0023174:80699-80718 | None:intergenic | 50.0% | |
| CAAGCGTGTGAAACAGACAC+TGG | - | tig0023174:80805-80824 | None:intergenic | 50.0% | |
| GGACACGTGCTCCATGAATC+CGG | - | tig0023174:78567-78586 | None:intergenic | 55.0% | |
| ! | TGATCCTGTGCTGCTCCAAC+AGG | + | tig0023174:78755-78774 | Msa1405960:CDS | 55.0% |
| TGAACCTGTTGGAGCAGCAC+AGG | - | tig0023174:78762-78781 | None:intergenic | 55.0% | |
| ACGTGTTGGGTATGGCTCGT+AGG | + | tig0023174:79014-79033 | Msa1405960:intron | 55.0% | |
| !! | GCTCGTAGGTGCCGATAAGT+GGG | + | tig0023174:79028-79047 | Msa1405960:intron | 55.0% |
| !! | GTAGGTGCCGATAAGTGGGA+AGG | + | tig0023174:79032-79051 | Msa1405960:intron | 55.0% |
| TCGGGGCTTGAAGCAGTTTC+TGG | + | tig0023174:79782-79801 | Msa1405960:CDS | 55.0% | |
| ATGCTGGATGGGGTTGTGGA+TGG | + | tig0023174:80029-80048 | Msa1405960:CDS | 55.0% | |
| ACAGAGACCGGAAGCAAGAG+AGG | + | tig0023174:80087-80106 | Msa1405960:CDS | 55.0% | |
| ! | GAAAAGGGCTTTGATGCCCC+AGG | + | tig0023174:80178-80197 | Msa1405960:CDS | 55.0% |
| CGTGAGCAGGGTCCAAAACT+AGG | - | tig0023174:80686-80705 | None:intergenic | 55.0% | |
| TGATCCTGGAATTGCTGGCG+AGG | + | tig0023174:81080-81099 | Msa1405960:CDS | 55.0% | |
| AATTGCTGGCGAGGAGGAGA+TGG | + | tig0023174:81089-81108 | Msa1405960:CDS | 55.0% | |
| !! | GGCTCGTAGGTGCCGATAAG+TGG | + | tig0023174:79027-79046 | Msa1405960:intron | 60.0% |
| GAGGATGCTGGATGGGGTTG+TGG | + | tig0023174:80025-80044 | Msa1405960:CDS | 60.0% | |
| TGCCCCAGGAGCTGCTCAAT+TGG | + | tig0023174:80192-80211 | Msa1405960:CDS | 60.0% | |
| TCCTGGAATTGCTGGCGAGG+AGG | + | tig0023174:81083-81102 | Msa1405960:CDS | 60.0% | |
| TCCTCCTCGCCAGCAATTCC+AGG | - | tig0023174:81087-81106 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023174 | gene | 78558 | 81152 | 78558 | ID=Msa1405960;Name=Msa1405960 |
| tig0023174 | mRNA | 78558 | 81152 | 78558 | ID=Msa1405960-mRNA-1;Parent=Msa1405960;Name=Msa1405960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|382 |
| tig0023174 | exon | 78558 | 78625 | 78558 | ID=Msa1405960-mRNA-1:exon:24286;Parent=Msa1405960-mRNA-1 |
| tig0023174 | exon | 78734 | 78776 | 78734 | ID=Msa1405960-mRNA-1:exon:24287;Parent=Msa1405960-mRNA-1 |
| tig0023174 | exon | 79761 | 80506 | 79761 | ID=Msa1405960-mRNA-1:exon:24288;Parent=Msa1405960-mRNA-1 |
| tig0023174 | exon | 80593 | 80704 | 80593 | ID=Msa1405960-mRNA-1:exon:24289;Parent=Msa1405960-mRNA-1 |
| tig0023174 | exon | 80891 | 80986 | 80891 | ID=Msa1405960-mRNA-1:exon:24290;Parent=Msa1405960-mRNA-1 |
| tig0023174 | exon | 81069 | 81152 | 81069 | ID=Msa1405960-mRNA-1:exon:24291;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 78558 | 78625 | 78558 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 78734 | 78776 | 78734 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 79761 | 80506 | 79761 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 80593 | 80704 | 80593 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 80891 | 80986 | 80891 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| tig0023174 | CDS | 81069 | 81152 | 81069 | ID=Msa1405960-mRNA-1:cds;Parent=Msa1405960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
