Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473120 | XP_003602444.2 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473120 | sp|Q96AP4|ZUP1_HUMAN | 34.386 | 285 | 148 | 9 | 89 | 371 | 318 | 565 | 1.66e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473120 | G7J9Q3 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0438760 | Msa0473120 | 0.920205 | 1.718214e-87 | -8.615850e-47 |
| Msa0472640 | Msa0473120 | 0.964933 | 5.915742e-124 | -8.615850e-47 |
| Msa0473120 | Msa0534900 | 0.807423 | 5.091094e-50 | -8.615850e-47 |
| Msa0473120 | Msa1170690 | 0.962927 | 1.832287e-121 | -8.615850e-47 |
| Msa0473120 | Msa1405960 | 0.957091 | 6.252346e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473120 | MtrunA17_Chr3g0128361 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Msa0473120 | MtrunA17_Chr5g0428821 | 58.371 | 442 | 124 | 5 | 1 | 382 | 3 | 444 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0473120 | AT5G24680.1 | 48.030 | 406 | 172 | 10 | 7 | 382 | 3 | 399 | 1.15e-110 | 330 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTCTTCTTTGAATTAT+AGG | 0.174767 | 3_3:-75581605 | None:intergenic |
| TCGGGGCTTGAAGCAGTTTC+TGG | 0.229564 | 3_3:-75582954 | Msa0473120:CDS |
| ATCATATAATCTCCTAGTTT+TGG | 0.229650 | 3_3:-75582065 | Msa0473120:CDS |
| CAACATGCTGCTGACCAAAT+TGG | 0.292474 | 3_3:+75582268 | None:intergenic |
| GATGAAAACGCAATCCAATT+TGG | 0.299607 | 3_3:-75582282 | Msa0473120:CDS |
| ACAACAGATTGGGATTCTTT+AGG | 0.304442 | 3_3:+75582423 | None:intergenic |
| AGATCACTAAAGCAGAAAAT+TGG | 0.308220 | 3_3:-75581827 | Msa0473120:CDS |
| TTGTTTACGGATCAACAAAA+TGG | 0.312701 | 3_3:-75582515 | Msa0473120:CDS |
| CGGGCAAGAATAGTTGATTT+TGG | 0.313545 | 3_3:-75582447 | Msa0473120:CDS |
| CAATTGGAACATGTTGTTTA+CGG | 0.316851 | 3_3:-75582528 | Msa0473120:CDS |
| TCCTCCTCGCCAGCAATTCC+AGG | 0.341681 | 3_3:+75581652 | None:intergenic |
| GGCCTTATTGAGAAATTGTT+TGG | 0.348733 | 3_3:-75582802 | Msa0473120:CDS |
| CTCTGCAATGAGGGGATATC+AGG | 0.349373 | 3_3:+75582600 | None:intergenic |
| CTCCAAACAATTTCTCAATA+AGG | 0.353127 | 3_3:+75582800 | None:intergenic |
| CTTGAGATTGCTTGGGAAAA+GGG | 0.361603 | 3_3:-75582573 | Msa0473120:CDS |
| GTGGCTTCTTCAGTGTATTC+CGG | 0.362191 | 3_3:+75581780 | None:intergenic |
| AACTCCATTCTGTTGATGAT+TGG | 0.367977 | 3_3:+75582090 | None:intergenic |
| TGATCCTGTGCTGCTCCAAC+AGG | 0.376439 | 3_3:-75583981 | Msa0473120:intron |
| CAATTCTGAGGATGCTGGAT+GGG | 0.379701 | 3_3:-75582718 | Msa0473120:CDS |
| TGCCCCAGGAGCTGCTCAAT+TGG | 0.383496 | 3_3:-75582544 | Msa0473120:CDS |
| AAAGAATCCCAATCTGTTGT+AGG | 0.384082 | 3_3:-75582420 | Msa0473120:CDS |
| GAGGATGCTGGATGGGGTTG+TGG | 0.386116 | 3_3:-75582711 | Msa0473120:CDS |
| CAAAGTTGAAGCGGGTTTGA+TGG | 0.393516 | 3_3:-75582823 | Msa0473120:CDS |
| GCTTGAGATTGCTTGGGAAA+AGG | 0.396568 | 3_3:-75582574 | Msa0473120:CDS |
| TACGTTGATCCTGGAATTGC+TGG | 0.403330 | 3_3:-75581661 | Msa0473120:CDS |
| AACAAAACCTCTCTTGCTTC+CGG | 0.406451 | 3_3:+75582642 | None:intergenic |
| GAACAATCAGTCAGTGGCTC+GGG | 0.407768 | 3_3:-75582972 | Msa0473120:CDS |
| AAAACATGGATCCGGATTCA+TGG | 0.416705 | 3_3:-75584183 | None:intergenic |
| AGATAATGGGGAATGCAAAA+TGG | 0.422905 | 3_3:-75582895 | Msa0473120:CDS |
| GGTGAGACTAGTAGAGATAA+TGG | 0.423295 | 3_3:-75582909 | Msa0473120:CDS |
| GGCAGACAAATTACGTGAGC+AGG | 0.434535 | 3_3:+75582040 | None:intergenic |
| GTGAGACTAGTAGAGATAAT+GGG | 0.435686 | 3_3:-75582908 | Msa0473120:CDS |
| TGTTCCAATTGAGCAGCTCC+TGG | 0.440162 | 3_3:+75582540 | None:intergenic |
| CACTTGTTCCTACAACAGAT+TGG | 0.447381 | 3_3:+75582412 | None:intergenic |
| ACTTGTTCCTACAACAGATT+GGG | 0.448713 | 3_3:+75582413 | None:intergenic |
| CAGTTGTGTTACGTTGATCC+TGG | 0.449229 | 3_3:-75581670 | Msa0473120:CDS |
| TTTCTGGAGATTGTAACAAT+TGG | 0.454219 | 3_3:-75582938 | Msa0473120:CDS |
| CATCCTCAGAATTGAGGCTC+TGG | 0.457496 | 3_3:+75582727 | None:intergenic |
| TTCCCTCTTCTCAGCTTCAA+TGG | 0.461872 | 3_3:-75584132 | Msa0473120:intron |
| GGGAACTGGTAAATCACAAA+AGG | 0.466526 | 3_3:+75584150 | None:intergenic |
| CCTTTGTACTTTCAACATGA+TGG | 0.472319 | 3_3:-75582142 | Msa0473120:CDS |
| CTGGAAATGATCAATGTAAC+CGG | 0.474736 | 3_3:+75582746 | None:intergenic |
| CGTGAGCAGGGTCCAAAACT+AGG | 0.476174 | 3_3:+75582053 | None:intergenic |
| AGCCTCAATTCTGAGGATGC+TGG | 0.481179 | 3_3:-75582723 | Msa0473120:CDS |
| TGAACCTGTTGGAGCAGCAC+AGG | 0.482656 | 3_3:+75583977 | None:intergenic |
| GGACACGTGCTCCATGAATC+CGG | 0.486259 | 3_3:+75584172 | None:intergenic |
| AGAGATGGCTTGAGATTGCT+TGG | 0.487071 | 3_3:-75582581 | Msa0473120:CDS |
| ATGCTGGATGGGGTTGTGGA+TGG | 0.501534 | 3_3:-75582707 | Msa0473120:CDS |
| AATTCTGAGGATGCTGGATG+GGG | 0.505505 | 3_3:-75582717 | Msa0473120:CDS |
| AATTGCTGGCGAGGAGGAGA+TGG | 0.507256 | 3_3:-75581647 | Msa0473120:CDS |
| TCAAGCCATCTCTGCAATGA+GGG | 0.517092 | 3_3:+75582591 | None:intergenic |
| TGTCTGTAAACCAATTAAGC+AGG | 0.517724 | 3_3:+75582860 | None:intergenic |
| GTTCCAATTGAGCAGCTCCT+GGG | 0.517934 | 3_3:+75582541 | None:intergenic |
| TGAAGCTGAGAAGAGGGAAC+TGG | 0.518833 | 3_3:+75584136 | None:intergenic |
| CAAGAAAGAAAACATGGATC+CGG | 0.520196 | 3_3:-75584191 | None:intergenic |
| GGTCACTCGAGAACAATAGT+TGG | 0.526319 | 3_3:-75582121 | Msa0473120:CDS |
| ATATCCCCTCATTGCAGAGA+TGG | 0.533952 | 3_3:-75582596 | Msa0473120:CDS |
| GAGATTGTAACAATTGGCAC+GGG | 0.536486 | 3_3:-75582932 | Msa0473120:CDS |
| CAAGCCAATCATCAACAGAA+TGG | 0.540472 | 3_3:-75582094 | Msa0473120:CDS |
| AACTTCTACAAAGTTGAAGC+GGG | 0.540979 | 3_3:-75582831 | Msa0473120:CDS |
| CTCAAGCCATCTCTGCAATG+AGG | 0.542374 | 3_3:+75582590 | None:intergenic |
| TGAACAATCAGTCAGTGGCT+CGG | 0.544843 | 3_3:-75582973 | Msa0473120:CDS |
| GAAAAGGGCTTTGATGCCCC+AGG | 0.553672 | 3_3:-75582558 | Msa0473120:CDS |
| ATCCAGCATCCTCAGAATTG+AGG | 0.561074 | 3_3:+75582721 | None:intergenic |
| TGAGACTAGTAGAGATAATG+GGG | 0.563549 | 3_3:-75582907 | Msa0473120:CDS |
| ACTGAAGAAGCCACAATACC+AGG | 0.565663 | 3_3:-75581771 | Msa0473120:intron |
| TCAATTCTGAGGATGCTGGA+TGG | 0.569675 | 3_3:-75582719 | Msa0473120:CDS |
| GGAGATTGTAACAATTGGCA+CGG | 0.570231 | 3_3:-75582933 | Msa0473120:CDS |
| AGAAGTAAGACCTGGTATTG+TGG | 0.570767 | 3_3:+75581761 | None:intergenic |
| TACCATTGAAGCTGAGAAGA+GGG | 0.572663 | 3_3:+75584130 | None:intergenic |
| ACAGAGACCGGAAGCAAGAG+AGG | 0.575871 | 3_3:-75582649 | Msa0473120:CDS |
| GGAACTGGTAAATCACAAAA+GGG | 0.580231 | 3_3:+75584151 | None:intergenic |
| TTTCCAGAGCCTCAATTCTG+AGG | 0.581276 | 3_3:-75582730 | Msa0473120:CDS |
| AGGATCATGAAAATGAGCAT+TGG | 0.590530 | 3_3:+75583997 | None:intergenic |
| TTCCAATTGAGCAGCTCCTG+GGG | 0.596703 | 3_3:+75582542 | None:intergenic |
| TCACTTACTAGCACAGAGAC+CGG | 0.600965 | 3_3:-75582661 | Msa0473120:CDS |
| CACTAAAGCAGAAAATTGGA+TGG | 0.601257 | 3_3:-75581823 | Msa0473120:CDS |
| CAACTTCTACAAAGTTGAAG+CGG | 0.601423 | 3_3:-75582832 | Msa0473120:CDS |
| GCAGACAAATTACGTGAGCA+GGG | 0.605295 | 3_3:+75582041 | None:intergenic |
| TCCTGGAATTGCTGGCGAGG+AGG | 0.610858 | 3_3:-75581653 | Msa0473120:CDS |
| GAGATGGCTTGAGATTGCTT+GGG | 0.611796 | 3_3:-75582580 | Msa0473120:CDS |
| AAGTTCTCATGAATTTCGTG+TGG | 0.614055 | 3_3:-75582317 | Msa0473120:CDS |
| TACGGATCAACAAAATGGAT+AGG | 0.621024 | 3_3:-75582510 | Msa0473120:CDS |
| TGATCCTGGAATTGCTGGCG+AGG | 0.622185 | 3_3:-75581656 | Msa0473120:CDS |
| CAAGCCATCTCTGCAATGAG+GGG | 0.632641 | 3_3:+75582592 | None:intergenic |
| AACAATCAGTCAGTGGCTCG+GGG | 0.634924 | 3_3:-75582971 | Msa0473120:CDS |
| GTACCATTGAAGCTGAGAAG+AGG | 0.635253 | 3_3:+75584129 | None:intergenic |
| CAGAGTGAACAATCAGTCAG+TGG | 0.650150 | 3_3:-75582978 | Msa0473120:CDS |
| CCATCATGTTGAAAGTACAA+AGG | 0.685122 | 3_3:+75582142 | None:intergenic |
| GATTGTAACAATTGGCACGG+GGG | 0.724337 | 3_3:-75582930 | Msa0473120:CDS |
| AGATTGTAACAATTGGCACG+GGG | 0.729653 | 3_3:-75582931 | Msa0473120:CDS |
| AACAAGTGTTGATAACACCG+TGG | 0.773466 | 3_3:-75582397 | Msa0473120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATAAAAAGTA+TGG | + | chr3_3:75583916-75583935 | None:intergenic | 10.0% |
| !! | CAACTTGTATTTAAATATTA+CGG | + | chr3_3:75582156-75582175 | None:intergenic | 15.0% |
| !! | ATTGTTAAAGATAATCATAA+TGG | + | chr3_3:75582613-75582632 | None:intergenic | 15.0% |
| !! | AACTAAATATTAAAAGAGTA+AGG | + | chr3_3:75583768-75583787 | None:intergenic | 15.0% |
| !! | ATAACTTATACATAAACACT+TGG | - | chr3_3:75582012-75582031 | Msa0473120:intron | 20.0% |
| !! | TTATTATCACTGAAAACTTA+AGG | + | chr3_3:75582191-75582210 | None:intergenic | 20.0% |
| !! | CAGTAAATTTAAAAAAAGTG+AGG | - | chr3_3:75583438-75583457 | Msa0473120:intron | 20.0% |
| !!! | TTAAATTTTGAAAGCTTTGT+CGG | - | chr3_3:75583614-75583633 | Msa0473120:intron | 20.0% |
| !! | AGTTTTCAGTGATAATAAGA+CGG | - | chr3_3:75582193-75582212 | Msa0473120:intron | 25.0% |
| ! | CAAAACAGTTTATCCAAATA+AGG | - | chr3_3:75582354-75582373 | Msa0473120:CDS | 25.0% |
| ! | AAATTACTGAGTGATAGTTT+AGG | + | chr3_3:75582402-75582421 | None:intergenic | 25.0% |
| ! | TTCAAAATAGGAGAAAATGA+TGG | + | chr3_3:75582473-75582492 | None:intergenic | 25.0% |
| !!! | GCTATTTTCAGTTTCAAAAT+AGG | + | chr3_3:75582485-75582504 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAACGGAAAA+GGG | + | chr3_3:75582691-75582710 | None:intergenic | 25.0% |
| ! | AACTTATAATCTAACGGAAA+AGG | + | chr3_3:75582692-75582711 | None:intergenic | 25.0% |
| ! | CATCAGAACTTATAATCTAA+CGG | + | chr3_3:75582698-75582717 | None:intergenic | 25.0% |
| ! | TTTATTTGCATATTCAGATG+AGG | - | chr3_3:75582737-75582756 | Msa0473120:CDS | 25.0% |
| !!! | AATTCAAAAAGCATTTTGTC+CGG | - | chr3_3:75583019-75583038 | Msa0473120:intron | 25.0% |
| !!! | ATCATTTCTTGTTTTATCCA+CGG | + | chr3_3:75583407-75583426 | None:intergenic | 25.0% |
| !! | ATCATATAATCTCCTAGTTT+TGG | - | chr3_3:75583719-75583738 | Msa0473120:intron | 25.0% |
| ! | AATTGAAATTACAATGAGTG+CGG | + | chr3_3:75583807-75583826 | None:intergenic | 25.0% |
| ! | ATGGCAAAAACTCATAAAAA+AGG | - | chr3_3:75583980-75583999 | Msa0473120:intron | 25.0% |
| ! | TGGCAAAAACTCATAAAAAA+GGG | - | chr3_3:75583981-75584000 | Msa0473120:intron | 25.0% |
| ! | TGATAAATGAGTATGTTTGA+CGG | - | chr3_3:75584077-75584096 | Msa0473120:intron | 25.0% |
| AATTGAGGAAGAAGAAGAAA+GGG | + | chr3_3:75581704-75581723 | None:intergenic | 30.0% | |
| ATCTTTCTCCAATAACTGAT+TGG | - | chr3_3:75581829-75581848 | Msa0473120:CDS | 30.0% | |
| AATCCAATCCAATCAGTTAT+TGG | + | chr3_3:75581840-75581859 | None:intergenic | 30.0% | |
| TAAGCTGAAAACAACTAATG+AGG | + | chr3_3:75581931-75581950 | None:intergenic | 30.0% | |
| AGTGATAATAAGACGGAAAA+TGG | - | chr3_3:75582200-75582219 | Msa0473120:intron | 30.0% | |
| TTAATTATAGTCAGAGACGT+AGG | - | chr3_3:75582236-75582255 | Msa0473120:intron | 30.0% | |
| GTTTATCCAAATAAGGCTTA+AGG | - | chr3_3:75582361-75582380 | Msa0473120:CDS | 30.0% | |
| !! | TCAAAACCTTAAGCCTTATT+TGG | + | chr3_3:75582370-75582389 | None:intergenic | 30.0% |
| ! | TTTCTGGAGATTGTAACAAT+TGG | - | chr3_3:75582846-75582865 | Msa0473120:CDS | 30.0% |
| GAAAAAATCTCCTGCTTAAT+TGG | - | chr3_3:75582914-75582933 | Msa0473120:CDS | 30.0% | |
| CTCCAAACAATTTCTCAATA+AGG | + | chr3_3:75582987-75583006 | None:intergenic | 30.0% | |
| ! | CAATTGGAACATGTTGTTTA+CGG | - | chr3_3:75583256-75583275 | Msa0473120:intron | 30.0% |
| TTGTTTACGGATCAACAAAA+TGG | - | chr3_3:75583269-75583288 | Msa0473120:intron | 30.0% | |
| AAGAAACAAAATTGTCTGTG+TGG | + | chr3_3:75583589-75583608 | None:intergenic | 30.0% | |
| ACTTGAAATGATGCATAATC+AGG | + | chr3_3:75583892-75583911 | None:intergenic | 30.0% | |
| AGATCACTAAAGCAGAAAAT+TGG | - | chr3_3:75583957-75583976 | Msa0473120:intron | 30.0% | |
| AAAAACTCATAAAAAAGGGC+CGG | - | chr3_3:75583985-75584004 | Msa0473120:CDS | 30.0% | |
| TTGTTAAAAGAAGTAAGACC+TGG | + | chr3_3:75584034-75584053 | None:intergenic | 30.0% | |
| GGAACTGGTAAATCACAAAA+GGG | + | chr3_3:75581636-75581655 | None:intergenic | 35.0% | |
| CAATTGAGGAAGAAGAAGAA+AGG | + | chr3_3:75581705-75581724 | None:intergenic | 35.0% | |
| ATCATCATCGATGTCAATTG+AGG | + | chr3_3:75581719-75581738 | None:intergenic | 35.0% | |
| TTCTACATACATGTACATGC+AGG | - | chr3_3:75581760-75581779 | Msa0473120:intron | 35.0% | |
| AGGATCATGAAAATGAGCAT+TGG | + | chr3_3:75581790-75581809 | None:intergenic | 35.0% | |
| TCTCCAATAACTGATTGGAT+TGG | - | chr3_3:75581834-75581853 | Msa0473120:CDS | 35.0% | |
| AAACACGTGATTAAACGTGT+TGG | - | chr3_3:75582048-75582067 | Msa0473120:intron | 35.0% | |
| AACACGTGATTAAACGTGTT+GGG | - | chr3_3:75582049-75582068 | Msa0473120:intron | 35.0% | |
| ! | TCATGAGCATTGTTGTAAGT+TGG | - | chr3_3:75582129-75582148 | Msa0473120:CDS | 35.0% |
| GTGAGACTAGTAGAGATAAT+GGG | - | chr3_3:75582876-75582895 | Msa0473120:CDS | 35.0% | |
| TGAGACTAGTAGAGATAATG+GGG | - | chr3_3:75582877-75582896 | Msa0473120:CDS | 35.0% | |
| !! | AGATAATGGGGAATGCAAAA+TGG | - | chr3_3:75582889-75582908 | Msa0473120:CDS | 35.0% |
| TGTCTGTAAACCAATTAAGC+AGG | + | chr3_3:75582927-75582946 | None:intergenic | 35.0% | |
| CAACTTCTACAAAGTTGAAG+CGG | - | chr3_3:75582952-75582971 | Msa0473120:CDS | 35.0% | |
| AACTTCTACAAAGTTGAAGC+GGG | - | chr3_3:75582953-75582972 | Msa0473120:CDS | 35.0% | |
| !! | GGCCTTATTGAGAAATTGTT+TGG | - | chr3_3:75582982-75583001 | Msa0473120:intron | 35.0% |
| CTGGAAATGATCAATGTAAC+CGG | + | chr3_3:75583041-75583060 | None:intergenic | 35.0% | |
| TACGGATCAACAAAATGGAT+AGG | - | chr3_3:75583274-75583293 | Msa0473120:intron | 35.0% | |
| ACAACAGATTGGGATTCTTT+AGG | + | chr3_3:75583364-75583383 | None:intergenic | 35.0% | |
| AAAGAATCCCAATCTGTTGT+AGG | - | chr3_3:75583364-75583383 | Msa0473120:intron | 35.0% | |
| ACTTGTTCCTACAACAGATT+GGG | + | chr3_3:75583374-75583393 | None:intergenic | 35.0% | |
| AAGTTCTCATGAATTTCGTG+TGG | - | chr3_3:75583467-75583486 | Msa0473120:intron | 35.0% | |
| GATGAAAACGCAATCCAATT+TGG | - | chr3_3:75583502-75583521 | Msa0473120:intron | 35.0% | |
| ! | CCATCATGTTGAAAGTACAA+AGG | + | chr3_3:75583645-75583664 | None:intergenic | 35.0% |
| CCTTTGTACTTTCAACATGA+TGG | - | chr3_3:75583642-75583661 | Msa0473120:intron | 35.0% | |
| !! | AACTCCATTCTGTTGATGAT+TGG | + | chr3_3:75583697-75583716 | None:intergenic | 35.0% |
| CACTAAAGCAGAAAATTGGA+TGG | - | chr3_3:75583961-75583980 | Msa0473120:intron | 35.0% | |
| GGGAACTGGTAAATCACAAA+AGG | + | chr3_3:75581637-75581656 | None:intergenic | 40.0% | |
| TACCATTGAAGCTGAGAAGA+GGG | + | chr3_3:75581657-75581676 | None:intergenic | 40.0% | |
| TTGGAGAAAGATGAACCTGT+TGG | + | chr3_3:75581821-75581840 | None:intergenic | 40.0% | |
| GTGATTAAACGTGTTGGGTA+TGG | - | chr3_3:75582054-75582073 | Msa0473120:CDS | 40.0% | |
| TTAACGCAACTCAGTACAGA+AGG | + | chr3_3:75582328-75582347 | None:intergenic | 40.0% | |
| GGAGATTGTAACAATTGGCA+CGG | - | chr3_3:75582851-75582870 | Msa0473120:CDS | 40.0% | |
| GAGATTGTAACAATTGGCAC+GGG | - | chr3_3:75582852-75582871 | Msa0473120:CDS | 40.0% | |
| AGATTGTAACAATTGGCACG+GGG | - | chr3_3:75582853-75582872 | Msa0473120:CDS | 40.0% | |
| GGTGAGACTAGTAGAGATAA+TGG | - | chr3_3:75582875-75582894 | Msa0473120:CDS | 40.0% | |
| AACAAAACCTCTCTTGCTTC+CGG | + | chr3_3:75583145-75583164 | None:intergenic | 40.0% | |
| !!! | GAAGCAAGAGAGGTTTTGTT+TGG | - | chr3_3:75583145-75583164 | Msa0473120:intron | 40.0% |
| !!! | AGAGGTTTTGTTTGGTGGTT+CGG | - | chr3_3:75583153-75583172 | Msa0473120:intron | 40.0% |
| CTTGAGATTGCTTGGGAAAA+GGG | - | chr3_3:75583211-75583230 | Msa0473120:intron | 40.0% | |
| ! | TCTTGCGTTCTTTTGCTCTT+CGG | - | chr3_3:75583317-75583336 | Msa0473120:intron | 40.0% |
| !! | CGGGCAAGAATAGTTGATTT+TGG | - | chr3_3:75583337-75583356 | Msa0473120:intron | 40.0% |
| CACTTGTTCCTACAACAGAT+TGG | + | chr3_3:75583375-75583394 | None:intergenic | 40.0% | |
| !! | AACAAGTGTTGATAACACCG+TGG | - | chr3_3:75583387-75583406 | Msa0473120:intron | 40.0% |
| TGATCAGTGAGAAAACGTGA+GGG | - | chr3_3:75583539-75583558 | Msa0473120:intron | 40.0% | |
| !! | TTTTGAAAGCTTTGTCGGAC+AGG | - | chr3_3:75583619-75583638 | Msa0473120:intron | 40.0% |
| CAAGCCAATCATCAACAGAA+TGG | - | chr3_3:75583690-75583709 | Msa0473120:intron | 40.0% | |
| AGAAGTAAGACCTGGTATTG+TGG | + | chr3_3:75584026-75584045 | None:intergenic | 40.0% | |
| TTCCCTCTTCTCAGCTTCAA+TGG | - | chr3_3:75581652-75581671 | Msa0473120:CDS | 45.0% | |
| GTACCATTGAAGCTGAGAAG+AGG | + | chr3_3:75581658-75581677 | None:intergenic | 45.0% | |
| ACACAACCCTTCCCACTTAT+CGG | + | chr3_3:75582090-75582109 | None:intergenic | 45.0% | |
| TTGTGTGATGGCTCATAGGT+AGG | - | chr3_3:75582104-75582123 | Msa0473120:CDS | 45.0% | |
| TGTGTGATGGCTCATAGGTA+GGG | - | chr3_3:75582105-75582124 | Msa0473120:CDS | 45.0% | |
| AGAAGATGCAAGCGCAAGTT+GGG | + | chr3_3:75582646-75582665 | None:intergenic | 45.0% | |
| AAGAAGATGCAAGCGCAAGT+TGG | + | chr3_3:75582647-75582666 | None:intergenic | 45.0% | |
| CAGAGTGAACAATCAGTCAG+TGG | - | chr3_3:75582806-75582825 | Msa0473120:CDS | 45.0% | |
| TGAACAATCAGTCAGTGGCT+CGG | - | chr3_3:75582811-75582830 | Msa0473120:CDS | 45.0% | |
| GATTGTAACAATTGGCACGG+GGG | - | chr3_3:75582854-75582873 | Msa0473120:CDS | 45.0% | |
| ! | CAAAGTTGAAGCGGGTTTGA+TGG | - | chr3_3:75582961-75582980 | Msa0473120:CDS | 45.0% |
| TTTCCAGAGCCTCAATTCTG+AGG | - | chr3_3:75583054-75583073 | Msa0473120:intron | 45.0% | |
| ATCCAGCATCCTCAGAATTG+AGG | + | chr3_3:75583066-75583085 | None:intergenic | 45.0% | |
| ! | TCAATTCTGAGGATGCTGGA+TGG | - | chr3_3:75583065-75583084 | Msa0473120:intron | 45.0% |
| ! | CAATTCTGAGGATGCTGGAT+GGG | - | chr3_3:75583066-75583085 | Msa0473120:intron | 45.0% |
| ! | AATTCTGAGGATGCTGGATG+GGG | - | chr3_3:75583067-75583086 | Msa0473120:intron | 45.0% |
| TCACTTACTAGCACAGAGAC+CGG | - | chr3_3:75583123-75583142 | Msa0473120:intron | 45.0% | |
| !!! | GCAAGAGAGGTTTTGTTTGG+TGG | - | chr3_3:75583148-75583167 | Msa0473120:intron | 45.0% |
| !!! | GAGGTTTTGTTTGGTGGTTC+GGG | - | chr3_3:75583154-75583173 | Msa0473120:intron | 45.0% |
| ATATCCCCTCATTGCAGAGA+TGG | - | chr3_3:75583188-75583207 | Msa0473120:intron | 45.0% | |
| TCAAGCCATCTCTGCAATGA+GGG | + | chr3_3:75583196-75583215 | None:intergenic | 45.0% | |
| AGAGATGGCTTGAGATTGCT+TGG | - | chr3_3:75583203-75583222 | Msa0473120:intron | 45.0% | |
| GAGATGGCTTGAGATTGCTT+GGG | - | chr3_3:75583204-75583223 | Msa0473120:intron | 45.0% | |
| GCTTGAGATTGCTTGGGAAA+AGG | - | chr3_3:75583210-75583229 | Msa0473120:intron | 45.0% | |
| ! | CTTGCGTTCTTTTGCTCTTC+GGG | - | chr3_3:75583318-75583337 | Msa0473120:intron | 45.0% |
| CAACATGCTGCTGACCAAAT+TGG | + | chr3_3:75583519-75583538 | None:intergenic | 45.0% | |
| GTGATCAGTGAGAAAACGTG+AGG | - | chr3_3:75583538-75583557 | Msa0473120:intron | 45.0% | |
| GGTCACTCGAGAACAATAGT+TGG | - | chr3_3:75583663-75583682 | Msa0473120:intron | 45.0% | |
| GCAGACAAATTACGTGAGCA+GGG | + | chr3_3:75583746-75583765 | None:intergenic | 45.0% | |
| TTACAATGAGTGCGGAACTG+CGG | + | chr3_3:75583799-75583818 | None:intergenic | 45.0% | |
| GTGGCTTCTTCAGTGTATTC+CGG | + | chr3_3:75584007-75584026 | None:intergenic | 45.0% | |
| ACTGAAGAAGCCACAATACC+AGG | - | chr3_3:75584013-75584032 | Msa0473120:intron | 45.0% | |
| CAGTTGTGTTACGTTGATCC+TGG | - | chr3_3:75584114-75584133 | Msa0473120:intron | 45.0% | |
| TACGTTGATCCTGGAATTGC+TGG | - | chr3_3:75584123-75584142 | Msa0473120:intron | 45.0% | |
| TGAAGCTGAGAAGAGGGAAC+TGG | + | chr3_3:75581651-75581670 | None:intergenic | 50.0% | |
| !! | TAGGTGCCGATAAGTGGGAA+GGG | - | chr3_3:75582081-75582100 | Msa0473120:CDS | 50.0% |
| AAGTGGGAAGGGTTGTGTGA+TGG | - | chr3_3:75582092-75582111 | Msa0473120:CDS | 50.0% | |
| AGGGTTGTGTGATGGCTCAT+AGG | - | chr3_3:75582100-75582119 | Msa0473120:CDS | 50.0% | |
| GAACAATCAGTCAGTGGCTC+GGG | - | chr3_3:75582812-75582831 | Msa0473120:CDS | 50.0% | |
| AACAATCAGTCAGTGGCTCG+GGG | - | chr3_3:75582813-75582832 | Msa0473120:CDS | 50.0% | |
| CATCCTCAGAATTGAGGCTC+TGG | + | chr3_3:75583060-75583079 | None:intergenic | 50.0% | |
| ! | AGCCTCAATTCTGAGGATGC+TGG | - | chr3_3:75583061-75583080 | Msa0473120:intron | 50.0% |
| CTCTGCAATGAGGGGATATC+AGG | + | chr3_3:75583187-75583206 | None:intergenic | 50.0% | |
| CAAGCCATCTCTGCAATGAG+GGG | + | chr3_3:75583195-75583214 | None:intergenic | 50.0% | |
| CTCAAGCCATCTCTGCAATG+AGG | + | chr3_3:75583197-75583216 | None:intergenic | 50.0% | |
| TTCCAATTGAGCAGCTCCTG+GGG | + | chr3_3:75583245-75583264 | None:intergenic | 50.0% | |
| GTTCCAATTGAGCAGCTCCT+GGG | + | chr3_3:75583246-75583265 | None:intergenic | 50.0% | |
| TGTTCCAATTGAGCAGCTCC+TGG | + | chr3_3:75583247-75583266 | None:intergenic | 50.0% | |
| GGCAGACAAATTACGTGAGC+AGG | + | chr3_3:75583747-75583766 | None:intergenic | 50.0% | |
| CAAGCGTGTGAAACAGACAC+TGG | + | chr3_3:75583853-75583872 | None:intergenic | 50.0% | |
| GGACACGTGCTCCATGAATC+CGG | + | chr3_3:75581615-75581634 | None:intergenic | 55.0% | |
| ! | TGATCCTGTGCTGCTCCAAC+AGG | - | chr3_3:75581803-75581822 | Msa0473120:CDS | 55.0% |
| TGAACCTGTTGGAGCAGCAC+AGG | + | chr3_3:75581810-75581829 | None:intergenic | 55.0% | |
| ACGTGTTGGGTATGGCTCGT+AGG | - | chr3_3:75582062-75582081 | Msa0473120:CDS | 55.0% | |
| !! | GCTCGTAGGTGCCGATAAGT+GGG | - | chr3_3:75582076-75582095 | Msa0473120:CDS | 55.0% |
| !! | GTAGGTGCCGATAAGTGGGA+AGG | - | chr3_3:75582080-75582099 | Msa0473120:CDS | 55.0% |
| TCGGGGCTTGAAGCAGTTTC+TGG | - | chr3_3:75582830-75582849 | Msa0473120:CDS | 55.0% | |
| ATGCTGGATGGGGTTGTGGA+TGG | - | chr3_3:75583077-75583096 | Msa0473120:intron | 55.0% | |
| ACAGAGACCGGAAGCAAGAG+AGG | - | chr3_3:75583135-75583154 | Msa0473120:intron | 55.0% | |
| ! | GAAAAGGGCTTTGATGCCCC+AGG | - | chr3_3:75583226-75583245 | Msa0473120:intron | 55.0% |
| CGTGAGCAGGGTCCAAAACT+AGG | + | chr3_3:75583734-75583753 | None:intergenic | 55.0% | |
| TGATCCTGGAATTGCTGGCG+AGG | - | chr3_3:75584128-75584147 | Msa0473120:intron | 55.0% | |
| AATTGCTGGCGAGGAGGAGA+TGG | - | chr3_3:75584137-75584156 | Msa0473120:CDS | 55.0% | |
| !! | GGCTCGTAGGTGCCGATAAG+TGG | - | chr3_3:75582075-75582094 | Msa0473120:CDS | 60.0% |
| GAGGATGCTGGATGGGGTTG+TGG | - | chr3_3:75583073-75583092 | Msa0473120:intron | 60.0% | |
| TGCCCCAGGAGCTGCTCAAT+TGG | - | chr3_3:75583240-75583259 | Msa0473120:intron | 60.0% | |
| TCCTGGAATTGCTGGCGAGG+AGG | - | chr3_3:75584131-75584150 | Msa0473120:intron | 60.0% | |
| TCCTCCTCGCCAGCAATTCC+AGG | + | chr3_3:75584135-75584154 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75581606 | 75584200 | 75581606 | ID=Msa0473120;Name=Msa0473120 |
| chr3_3 | mRNA | 75581606 | 75584200 | 75581606 | ID=Msa0473120-mRNA-1;Parent=Msa0473120;Name=Msa0473120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|382 |
| chr3_3 | exon | 75584133 | 75584200 | 75584133 | ID=Msa0473120-mRNA-1:exon:19632;Parent=Msa0473120-mRNA-1 |
| chr3_3 | exon | 75583982 | 75584024 | 75583982 | ID=Msa0473120-mRNA-1:exon:19631;Parent=Msa0473120-mRNA-1 |
| chr3_3 | exon | 75582252 | 75582997 | 75582252 | ID=Msa0473120-mRNA-1:exon:19630;Parent=Msa0473120-mRNA-1 |
| chr3_3 | exon | 75582054 | 75582165 | 75582054 | ID=Msa0473120-mRNA-1:exon:19629;Parent=Msa0473120-mRNA-1 |
| chr3_3 | exon | 75581772 | 75581867 | 75581772 | ID=Msa0473120-mRNA-1:exon:19628;Parent=Msa0473120-mRNA-1 |
| chr3_3 | exon | 75581606 | 75581689 | 75581606 | ID=Msa0473120-mRNA-1:exon:19627;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75584133 | 75584200 | 75584133 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75583982 | 75584024 | 75583982 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75582252 | 75582997 | 75582252 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75582054 | 75582165 | 75582054 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75581772 | 75581867 | 75581772 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| chr3_3 | CDS | 75581606 | 75581689 | 75581606 | ID=Msa0473120-mRNA-1:cds;Parent=Msa0473120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
