Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170690 | XP_003602444.2 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170690 | sp|Q96AP4|ZUP1_HUMAN | 34.386 | 285 | 148 | 9 | 89 | 371 | 318 | 565 | 1.66e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170690 | G7J9Q3 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006040 | Msa1170690 | 0.803366 | 3.607897e-49 | -8.615850e-47 |
| Msa0036160 | Msa1170690 | 0.816922 | 4.306941e-52 | -8.615850e-47 |
| Msa0054750 | Msa1170690 | 0.800641 | 1.310373e-48 | -8.615850e-47 |
| Msa0793380 | Msa1170690 | 0.801112 | 1.049694e-48 | -8.615850e-47 |
| Msa0438760 | Msa1170690 | 0.919976 | 2.293361e-87 | -8.615850e-47 |
| Msa0472640 | Msa1170690 | 0.993433 | 1.056091e-199 | -8.615850e-47 |
| Msa0473120 | Msa1170690 | 0.962927 | 1.832287e-121 | -8.615850e-47 |
| Msa1012830 | Msa1170690 | 0.801900 | 7.237472e-49 | -8.615850e-47 |
| Msa0358860 | Msa1170690 | 0.810987 | 8.771294e-51 | -8.615850e-47 |
| Msa1170690 | Msa1405960 | 0.971230 | 7.731502e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170690 | MtrunA17_Chr3g0128361 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Msa1170690 | MtrunA17_Chr5g0428821 | 58.371 | 442 | 124 | 5 | 1 | 382 | 3 | 444 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170690 | AT5G24680.1 | 48.030 | 406 | 172 | 10 | 7 | 382 | 3 | 399 | 1.15e-110 | 330 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTCTTCTTTGAATTAT+AGG | 0.174767 | 7_4:+64117782 | Msa1170690:CDS |
| TCGGGGCTTGAAGCAGTTTC+TGG | 0.229564 | 7_4:+64116433 | Msa1170690:CDS |
| ATCATATAATCTCCTAGTTT+TGG | 0.229650 | 7_4:+64117322 | Msa1170690:CDS |
| CAACATGCTGCTGACCAAAT+TGG | 0.292474 | 7_4:-64117119 | None:intergenic |
| GATGAAAACGCAATCCAATT+TGG | 0.299607 | 7_4:+64117105 | Msa1170690:CDS |
| ACAACAGATTGGGATTCTTT+AGG | 0.304442 | 7_4:-64116964 | None:intergenic |
| AGATCACTAAAGCAGAAAAT+TGG | 0.308220 | 7_4:+64117560 | Msa1170690:CDS |
| TTGTTTACGGATCAACAAAA+TGG | 0.312701 | 7_4:+64116872 | Msa1170690:CDS |
| CGGGCAAGAATAGTTGATTT+TGG | 0.313545 | 7_4:+64116940 | Msa1170690:CDS |
| CAATTGGAACATGTTGTTTA+CGG | 0.316851 | 7_4:+64116859 | Msa1170690:CDS |
| TCCTCCTCGCCAGCAATTCC+AGG | 0.341681 | 7_4:-64117735 | None:intergenic |
| GGCCTTATTGAGAAATTGTT+TGG | 0.348733 | 7_4:+64116585 | Msa1170690:CDS |
| CTCTGCAATGAGGGGATATC+AGG | 0.349373 | 7_4:-64116787 | None:intergenic |
| CTCCAAACAATTTCTCAATA+AGG | 0.353127 | 7_4:-64116587 | None:intergenic |
| CTTGAGATTGCTTGGGAAAA+GGG | 0.361603 | 7_4:+64116814 | Msa1170690:CDS |
| GTGGCTTCTTCAGTGTATTC+CGG | 0.362191 | 7_4:-64117607 | None:intergenic |
| AACTCCATTCTGTTGATGAT+TGG | 0.367977 | 7_4:-64117297 | None:intergenic |
| TGATCCTGTGCTGCTCCAAC+AGG | 0.376439 | 7_4:+64115406 | Msa1170690:CDS |
| CAATTCTGAGGATGCTGGAT+GGG | 0.379701 | 7_4:+64116669 | Msa1170690:CDS |
| TGCCCCAGGAGCTGCTCAAT+TGG | 0.383496 | 7_4:+64116843 | Msa1170690:CDS |
| AAAGAATCCCAATCTGTTGT+AGG | 0.384082 | 7_4:+64116967 | Msa1170690:CDS |
| GAGGATGCTGGATGGGGTTG+TGG | 0.386116 | 7_4:+64116676 | Msa1170690:CDS |
| CAAAGTTGAAGCGGGTTTGA+TGG | 0.393516 | 7_4:+64116564 | Msa1170690:CDS |
| GCTTGAGATTGCTTGGGAAA+AGG | 0.396568 | 7_4:+64116813 | Msa1170690:CDS |
| TACGTTGATCCTGGAATTGC+TGG | 0.403330 | 7_4:+64117726 | Msa1170690:CDS |
| AACAAAACCTCTCTTGCTTC+CGG | 0.406451 | 7_4:-64116745 | None:intergenic |
| GAACAATCAGTCAGTGGCTC+GGG | 0.407768 | 7_4:+64116415 | Msa1170690:CDS |
| AAAACATGGATCCGGATTCA+TGG | 0.416705 | 7_4:+64115204 | None:intergenic |
| AGATAATGGGGAATGCAAAA+TGG | 0.422905 | 7_4:+64116492 | Msa1170690:CDS |
| GGTGAGACTAGTAGAGATAA+TGG | 0.423295 | 7_4:+64116478 | Msa1170690:CDS |
| GGCAGACAAATTACGTGAGC+AGG | 0.434535 | 7_4:-64117347 | None:intergenic |
| GTGAGACTAGTAGAGATAAT+GGG | 0.435686 | 7_4:+64116479 | Msa1170690:CDS |
| TGTTCCAATTGAGCAGCTCC+TGG | 0.440162 | 7_4:-64116847 | None:intergenic |
| CACTTGTTCCTACAACAGAT+TGG | 0.447381 | 7_4:-64116975 | None:intergenic |
| ACTTGTTCCTACAACAGATT+GGG | 0.448713 | 7_4:-64116974 | None:intergenic |
| CAGTTGTGTTACGTTGATCC+TGG | 0.449229 | 7_4:+64117717 | Msa1170690:intron |
| TTTCTGGAGATTGTAACAAT+TGG | 0.454219 | 7_4:+64116449 | Msa1170690:CDS |
| CATCCTCAGAATTGAGGCTC+TGG | 0.457496 | 7_4:-64116660 | None:intergenic |
| TTCCCTCTTCTCAGCTTCAA+TGG | 0.461872 | 7_4:+64115255 | Msa1170690:CDS |
| GGGAACTGGTAAATCACAAA+AGG | 0.466526 | 7_4:-64115237 | None:intergenic |
| CCTTTGTACTTTCAACATGA+TGG | 0.472319 | 7_4:+64117245 | Msa1170690:CDS |
| CTGGAAATGATCAATGTAAC+CGG | 0.474736 | 7_4:-64116641 | None:intergenic |
| CGTGAGCAGGGTCCAAAACT+AGG | 0.476174 | 7_4:-64117334 | None:intergenic |
| AGCCTCAATTCTGAGGATGC+TGG | 0.481179 | 7_4:+64116664 | Msa1170690:CDS |
| TGAACCTGTTGGAGCAGCAC+AGG | 0.482656 | 7_4:-64115410 | None:intergenic |
| GGACACGTGCTCCATGAATC+CGG | 0.486259 | 7_4:-64115215 | None:intergenic |
| AGAGATGGCTTGAGATTGCT+TGG | 0.487071 | 7_4:+64116806 | Msa1170690:CDS |
| ATGCTGGATGGGGTTGTGGA+TGG | 0.501534 | 7_4:+64116680 | Msa1170690:CDS |
| AATTCTGAGGATGCTGGATG+GGG | 0.505505 | 7_4:+64116670 | Msa1170690:CDS |
| AATTGCTGGCGAGGAGGAGA+TGG | 0.507256 | 7_4:+64117740 | Msa1170690:CDS |
| TCAAGCCATCTCTGCAATGA+GGG | 0.517092 | 7_4:-64116796 | None:intergenic |
| TGTCTGTAAACCAATTAAGC+AGG | 0.517724 | 7_4:-64116527 | None:intergenic |
| GTTCCAATTGAGCAGCTCCT+GGG | 0.517934 | 7_4:-64116846 | None:intergenic |
| TGAAGCTGAGAAGAGGGAAC+TGG | 0.518833 | 7_4:-64115251 | None:intergenic |
| CAAGAAAGAAAACATGGATC+CGG | 0.520196 | 7_4:+64115196 | None:intergenic |
| GGTCACTCGAGAACAATAGT+TGG | 0.526319 | 7_4:+64117266 | Msa1170690:CDS |
| ATATCCCCTCATTGCAGAGA+TGG | 0.533952 | 7_4:+64116791 | Msa1170690:CDS |
| GAGATTGTAACAATTGGCAC+GGG | 0.536486 | 7_4:+64116455 | Msa1170690:CDS |
| CAAGCCAATCATCAACAGAA+TGG | 0.540472 | 7_4:+64117293 | Msa1170690:CDS |
| AACTTCTACAAAGTTGAAGC+GGG | 0.540979 | 7_4:+64116556 | Msa1170690:CDS |
| CTCAAGCCATCTCTGCAATG+AGG | 0.542374 | 7_4:-64116797 | None:intergenic |
| TGAACAATCAGTCAGTGGCT+CGG | 0.544843 | 7_4:+64116414 | Msa1170690:CDS |
| GAAAAGGGCTTTGATGCCCC+AGG | 0.553672 | 7_4:+64116829 | Msa1170690:CDS |
| ATCCAGCATCCTCAGAATTG+AGG | 0.561074 | 7_4:-64116666 | None:intergenic |
| TGAGACTAGTAGAGATAATG+GGG | 0.563549 | 7_4:+64116480 | Msa1170690:CDS |
| ACTGAAGAAGCCACAATACC+AGG | 0.565663 | 7_4:+64117616 | Msa1170690:CDS |
| TCAATTCTGAGGATGCTGGA+TGG | 0.569675 | 7_4:+64116668 | Msa1170690:CDS |
| GGAGATTGTAACAATTGGCA+CGG | 0.570231 | 7_4:+64116454 | Msa1170690:CDS |
| AGAAGTAAGACCTGGTATTG+TGG | 0.570767 | 7_4:-64117626 | None:intergenic |
| TACCATTGAAGCTGAGAAGA+GGG | 0.572663 | 7_4:-64115257 | None:intergenic |
| ACAGAGACCGGAAGCAAGAG+AGG | 0.575871 | 7_4:+64116738 | Msa1170690:CDS |
| GGAACTGGTAAATCACAAAA+GGG | 0.580231 | 7_4:-64115236 | None:intergenic |
| TTTCCAGAGCCTCAATTCTG+AGG | 0.581276 | 7_4:+64116657 | Msa1170690:CDS |
| AGGATCATGAAAATGAGCAT+TGG | 0.590530 | 7_4:-64115390 | None:intergenic |
| TTCCAATTGAGCAGCTCCTG+GGG | 0.596703 | 7_4:-64116845 | None:intergenic |
| TCACTTACTAGCACAGAGAC+CGG | 0.600965 | 7_4:+64116726 | Msa1170690:CDS |
| CACTAAAGCAGAAAATTGGA+TGG | 0.601257 | 7_4:+64117564 | Msa1170690:CDS |
| CAACTTCTACAAAGTTGAAG+CGG | 0.601423 | 7_4:+64116555 | Msa1170690:CDS |
| GCAGACAAATTACGTGAGCA+GGG | 0.605295 | 7_4:-64117346 | None:intergenic |
| TCCTGGAATTGCTGGCGAGG+AGG | 0.610858 | 7_4:+64117734 | Msa1170690:CDS |
| GAGATGGCTTGAGATTGCTT+GGG | 0.611796 | 7_4:+64116807 | Msa1170690:CDS |
| AAGTTCTCATGAATTTCGTG+TGG | 0.614055 | 7_4:+64117070 | Msa1170690:CDS |
| TACGGATCAACAAAATGGAT+AGG | 0.621024 | 7_4:+64116877 | Msa1170690:CDS |
| TGATCCTGGAATTGCTGGCG+AGG | 0.622185 | 7_4:+64117731 | Msa1170690:CDS |
| CAAGCCATCTCTGCAATGAG+GGG | 0.632641 | 7_4:-64116795 | None:intergenic |
| AACAATCAGTCAGTGGCTCG+GGG | 0.634924 | 7_4:+64116416 | Msa1170690:CDS |
| GTACCATTGAAGCTGAGAAG+AGG | 0.635253 | 7_4:-64115258 | None:intergenic |
| CAGAGTGAACAATCAGTCAG+TGG | 0.650150 | 7_4:+64116409 | Msa1170690:intron |
| CCATCATGTTGAAAGTACAA+AGG | 0.685122 | 7_4:-64117245 | None:intergenic |
| GATTGTAACAATTGGCACGG+GGG | 0.724337 | 7_4:+64116457 | Msa1170690:CDS |
| AGATTGTAACAATTGGCACG+GGG | 0.729653 | 7_4:+64116456 | Msa1170690:CDS |
| AACAAGTGTTGATAACACCG+TGG | 0.773466 | 7_4:+64116990 | Msa1170690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATAAAAAGTA+TGG | - | chr7_4:64117519-64117538 | None:intergenic | 10.0% |
| !! | CAACTTGTATTTAAATATTA+CGG | - | chr7_4:64115759-64115778 | None:intergenic | 15.0% |
| !! | ATTGTTAAAGATAATCATAA+TGG | - | chr7_4:64116216-64116235 | None:intergenic | 15.0% |
| !! | AACTAAATATTAAAAGAGTA+AGG | - | chr7_4:64117371-64117390 | None:intergenic | 15.0% |
| !! | ATAACTTATACATAAACACT+TGG | + | chr7_4:64115615-64115634 | Msa1170690:intron | 20.0% |
| !! | TTATTATCACTGAAAACTTA+AGG | - | chr7_4:64115794-64115813 | None:intergenic | 20.0% |
| !! | CAGTAAATTTAAAAAAAGTG+AGG | + | chr7_4:64117041-64117060 | Msa1170690:CDS | 20.0% |
| !!! | TTAAATTTTGAAAGCTTTGT+CGG | + | chr7_4:64117217-64117236 | Msa1170690:intron | 20.0% |
| !! | AGTTTTCAGTGATAATAAGA+CGG | + | chr7_4:64115796-64115815 | Msa1170690:intron | 25.0% |
| ! | CAAAACAGTTTATCCAAATA+AGG | + | chr7_4:64115957-64115976 | Msa1170690:intron | 25.0% |
| ! | AAATTACTGAGTGATAGTTT+AGG | - | chr7_4:64116005-64116024 | None:intergenic | 25.0% |
| ! | TTCAAAATAGGAGAAAATGA+TGG | - | chr7_4:64116076-64116095 | None:intergenic | 25.0% |
| !!! | GCTATTTTCAGTTTCAAAAT+AGG | - | chr7_4:64116088-64116107 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAACGGAAAA+GGG | - | chr7_4:64116294-64116313 | None:intergenic | 25.0% |
| ! | AACTTATAATCTAACGGAAA+AGG | - | chr7_4:64116295-64116314 | None:intergenic | 25.0% |
| ! | CATCAGAACTTATAATCTAA+CGG | - | chr7_4:64116301-64116320 | None:intergenic | 25.0% |
| ! | TTTATTTGCATATTCAGATG+AGG | + | chr7_4:64116340-64116359 | Msa1170690:intron | 25.0% |
| !!! | AATTCAAAAAGCATTTTGTC+CGG | + | chr7_4:64116622-64116641 | Msa1170690:CDS | 25.0% |
| !!! | ATCATTTCTTGTTTTATCCA+CGG | - | chr7_4:64117010-64117029 | None:intergenic | 25.0% |
| !! | ATCATATAATCTCCTAGTTT+TGG | + | chr7_4:64117322-64117341 | Msa1170690:CDS | 25.0% |
| ! | AATTGAAATTACAATGAGTG+CGG | - | chr7_4:64117410-64117429 | None:intergenic | 25.0% |
| ! | ATGGCAAAAACTCATAAAAA+AGG | + | chr7_4:64117583-64117602 | Msa1170690:CDS | 25.0% |
| ! | TGGCAAAAACTCATAAAAAA+GGG | + | chr7_4:64117584-64117603 | Msa1170690:CDS | 25.0% |
| ! | TGATAAATGAGTATGTTTGA+CGG | + | chr7_4:64117680-64117699 | Msa1170690:intron | 25.0% |
| AATTGAGGAAGAAGAAGAAA+GGG | - | chr7_4:64115307-64115326 | None:intergenic | 30.0% | |
| ATCTTTCTCCAATAACTGAT+TGG | + | chr7_4:64115432-64115451 | Msa1170690:intron | 30.0% | |
| AATCCAATCCAATCAGTTAT+TGG | - | chr7_4:64115443-64115462 | None:intergenic | 30.0% | |
| TAAGCTGAAAACAACTAATG+AGG | - | chr7_4:64115534-64115553 | None:intergenic | 30.0% | |
| AGTGATAATAAGACGGAAAA+TGG | + | chr7_4:64115803-64115822 | Msa1170690:intron | 30.0% | |
| TTAATTATAGTCAGAGACGT+AGG | + | chr7_4:64115839-64115858 | Msa1170690:intron | 30.0% | |
| GTTTATCCAAATAAGGCTTA+AGG | + | chr7_4:64115964-64115983 | Msa1170690:intron | 30.0% | |
| !! | TCAAAACCTTAAGCCTTATT+TGG | - | chr7_4:64115973-64115992 | None:intergenic | 30.0% |
| ! | TTTCTGGAGATTGTAACAAT+TGG | + | chr7_4:64116449-64116468 | Msa1170690:CDS | 30.0% |
| GAAAAAATCTCCTGCTTAAT+TGG | + | chr7_4:64116517-64116536 | Msa1170690:CDS | 30.0% | |
| CTCCAAACAATTTCTCAATA+AGG | - | chr7_4:64116590-64116609 | None:intergenic | 30.0% | |
| ! | CAATTGGAACATGTTGTTTA+CGG | + | chr7_4:64116859-64116878 | Msa1170690:CDS | 30.0% |
| TTGTTTACGGATCAACAAAA+TGG | + | chr7_4:64116872-64116891 | Msa1170690:CDS | 30.0% | |
| AAGAAACAAAATTGTCTGTG+TGG | - | chr7_4:64117192-64117211 | None:intergenic | 30.0% | |
| ACTTGAAATGATGCATAATC+AGG | - | chr7_4:64117495-64117514 | None:intergenic | 30.0% | |
| AGATCACTAAAGCAGAAAAT+TGG | + | chr7_4:64117560-64117579 | Msa1170690:CDS | 30.0% | |
| AAAAACTCATAAAAAAGGGC+CGG | + | chr7_4:64117588-64117607 | Msa1170690:CDS | 30.0% | |
| TTGTTAAAAGAAGTAAGACC+TGG | - | chr7_4:64117637-64117656 | None:intergenic | 30.0% | |
| GGAACTGGTAAATCACAAAA+GGG | - | chr7_4:64115239-64115258 | None:intergenic | 35.0% | |
| CAATTGAGGAAGAAGAAGAA+AGG | - | chr7_4:64115308-64115327 | None:intergenic | 35.0% | |
| ATCATCATCGATGTCAATTG+AGG | - | chr7_4:64115322-64115341 | None:intergenic | 35.0% | |
| TTCTACATACATGTACATGC+AGG | + | chr7_4:64115363-64115382 | Msa1170690:intron | 35.0% | |
| AGGATCATGAAAATGAGCAT+TGG | - | chr7_4:64115393-64115412 | None:intergenic | 35.0% | |
| TCTCCAATAACTGATTGGAT+TGG | + | chr7_4:64115437-64115456 | Msa1170690:intron | 35.0% | |
| AAACACGTGATTAAACGTGT+TGG | + | chr7_4:64115651-64115670 | Msa1170690:intron | 35.0% | |
| AACACGTGATTAAACGTGTT+GGG | + | chr7_4:64115652-64115671 | Msa1170690:intron | 35.0% | |
| ! | TCATGAGCATTGTTGTAAGT+TGG | + | chr7_4:64115732-64115751 | Msa1170690:intron | 35.0% |
| GTGAGACTAGTAGAGATAAT+GGG | + | chr7_4:64116479-64116498 | Msa1170690:CDS | 35.0% | |
| TGAGACTAGTAGAGATAATG+GGG | + | chr7_4:64116480-64116499 | Msa1170690:CDS | 35.0% | |
| !! | AGATAATGGGGAATGCAAAA+TGG | + | chr7_4:64116492-64116511 | Msa1170690:CDS | 35.0% |
| TGTCTGTAAACCAATTAAGC+AGG | - | chr7_4:64116530-64116549 | None:intergenic | 35.0% | |
| CAACTTCTACAAAGTTGAAG+CGG | + | chr7_4:64116555-64116574 | Msa1170690:CDS | 35.0% | |
| AACTTCTACAAAGTTGAAGC+GGG | + | chr7_4:64116556-64116575 | Msa1170690:CDS | 35.0% | |
| !! | GGCCTTATTGAGAAATTGTT+TGG | + | chr7_4:64116585-64116604 | Msa1170690:CDS | 35.0% |
| CTGGAAATGATCAATGTAAC+CGG | - | chr7_4:64116644-64116663 | None:intergenic | 35.0% | |
| TACGGATCAACAAAATGGAT+AGG | + | chr7_4:64116877-64116896 | Msa1170690:CDS | 35.0% | |
| ACAACAGATTGGGATTCTTT+AGG | - | chr7_4:64116967-64116986 | None:intergenic | 35.0% | |
| AAAGAATCCCAATCTGTTGT+AGG | + | chr7_4:64116967-64116986 | Msa1170690:CDS | 35.0% | |
| ACTTGTTCCTACAACAGATT+GGG | - | chr7_4:64116977-64116996 | None:intergenic | 35.0% | |
| AAGTTCTCATGAATTTCGTG+TGG | + | chr7_4:64117070-64117089 | Msa1170690:CDS | 35.0% | |
| GATGAAAACGCAATCCAATT+TGG | + | chr7_4:64117105-64117124 | Msa1170690:CDS | 35.0% | |
| ! | CCATCATGTTGAAAGTACAA+AGG | - | chr7_4:64117248-64117267 | None:intergenic | 35.0% |
| CCTTTGTACTTTCAACATGA+TGG | + | chr7_4:64117245-64117264 | Msa1170690:CDS | 35.0% | |
| !! | AACTCCATTCTGTTGATGAT+TGG | - | chr7_4:64117300-64117319 | None:intergenic | 35.0% |
| CACTAAAGCAGAAAATTGGA+TGG | + | chr7_4:64117564-64117583 | Msa1170690:CDS | 35.0% | |
| GGGAACTGGTAAATCACAAA+AGG | - | chr7_4:64115240-64115259 | None:intergenic | 40.0% | |
| TACCATTGAAGCTGAGAAGA+GGG | - | chr7_4:64115260-64115279 | None:intergenic | 40.0% | |
| TTGGAGAAAGATGAACCTGT+TGG | - | chr7_4:64115424-64115443 | None:intergenic | 40.0% | |
| GTGATTAAACGTGTTGGGTA+TGG | + | chr7_4:64115657-64115676 | Msa1170690:intron | 40.0% | |
| TTAACGCAACTCAGTACAGA+AGG | - | chr7_4:64115931-64115950 | None:intergenic | 40.0% | |
| GGAGATTGTAACAATTGGCA+CGG | + | chr7_4:64116454-64116473 | Msa1170690:CDS | 40.0% | |
| GAGATTGTAACAATTGGCAC+GGG | + | chr7_4:64116455-64116474 | Msa1170690:CDS | 40.0% | |
| AGATTGTAACAATTGGCACG+GGG | + | chr7_4:64116456-64116475 | Msa1170690:CDS | 40.0% | |
| GGTGAGACTAGTAGAGATAA+TGG | + | chr7_4:64116478-64116497 | Msa1170690:CDS | 40.0% | |
| AACAAAACCTCTCTTGCTTC+CGG | - | chr7_4:64116748-64116767 | None:intergenic | 40.0% | |
| !!! | GAAGCAAGAGAGGTTTTGTT+TGG | + | chr7_4:64116748-64116767 | Msa1170690:CDS | 40.0% |
| !!! | AGAGGTTTTGTTTGGTGGTT+CGG | + | chr7_4:64116756-64116775 | Msa1170690:CDS | 40.0% |
| CTTGAGATTGCTTGGGAAAA+GGG | + | chr7_4:64116814-64116833 | Msa1170690:CDS | 40.0% | |
| ! | TCTTGCGTTCTTTTGCTCTT+CGG | + | chr7_4:64116920-64116939 | Msa1170690:CDS | 40.0% |
| !! | CGGGCAAGAATAGTTGATTT+TGG | + | chr7_4:64116940-64116959 | Msa1170690:CDS | 40.0% |
| CACTTGTTCCTACAACAGAT+TGG | - | chr7_4:64116978-64116997 | None:intergenic | 40.0% | |
| !! | AACAAGTGTTGATAACACCG+TGG | + | chr7_4:64116990-64117009 | Msa1170690:CDS | 40.0% |
| TGATCAGTGAGAAAACGTGA+GGG | + | chr7_4:64117142-64117161 | Msa1170690:intron | 40.0% | |
| !! | TTTTGAAAGCTTTGTCGGAC+AGG | + | chr7_4:64117222-64117241 | Msa1170690:intron | 40.0% |
| CAAGCCAATCATCAACAGAA+TGG | + | chr7_4:64117293-64117312 | Msa1170690:CDS | 40.0% | |
| AGAAGTAAGACCTGGTATTG+TGG | - | chr7_4:64117629-64117648 | None:intergenic | 40.0% | |
| TTCCCTCTTCTCAGCTTCAA+TGG | + | chr7_4:64115255-64115274 | Msa1170690:CDS | 45.0% | |
| GTACCATTGAAGCTGAGAAG+AGG | - | chr7_4:64115261-64115280 | None:intergenic | 45.0% | |
| ACACAACCCTTCCCACTTAT+CGG | - | chr7_4:64115693-64115712 | None:intergenic | 45.0% | |
| TTGTGTGATGGCTCATAGGT+AGG | + | chr7_4:64115707-64115726 | Msa1170690:intron | 45.0% | |
| TGTGTGATGGCTCATAGGTA+GGG | + | chr7_4:64115708-64115727 | Msa1170690:intron | 45.0% | |
| AGAAGATGCAAGCGCAAGTT+GGG | - | chr7_4:64116249-64116268 | None:intergenic | 45.0% | |
| AAGAAGATGCAAGCGCAAGT+TGG | - | chr7_4:64116250-64116269 | None:intergenic | 45.0% | |
| CAGAGTGAACAATCAGTCAG+TGG | + | chr7_4:64116409-64116428 | Msa1170690:intron | 45.0% | |
| TGAACAATCAGTCAGTGGCT+CGG | + | chr7_4:64116414-64116433 | Msa1170690:CDS | 45.0% | |
| GATTGTAACAATTGGCACGG+GGG | + | chr7_4:64116457-64116476 | Msa1170690:CDS | 45.0% | |
| ! | CAAAGTTGAAGCGGGTTTGA+TGG | + | chr7_4:64116564-64116583 | Msa1170690:CDS | 45.0% |
| TTTCCAGAGCCTCAATTCTG+AGG | + | chr7_4:64116657-64116676 | Msa1170690:CDS | 45.0% | |
| ATCCAGCATCCTCAGAATTG+AGG | - | chr7_4:64116669-64116688 | None:intergenic | 45.0% | |
| ! | TCAATTCTGAGGATGCTGGA+TGG | + | chr7_4:64116668-64116687 | Msa1170690:CDS | 45.0% |
| ! | CAATTCTGAGGATGCTGGAT+GGG | + | chr7_4:64116669-64116688 | Msa1170690:CDS | 45.0% |
| ! | AATTCTGAGGATGCTGGATG+GGG | + | chr7_4:64116670-64116689 | Msa1170690:CDS | 45.0% |
| TCACTTACTAGCACAGAGAC+CGG | + | chr7_4:64116726-64116745 | Msa1170690:CDS | 45.0% | |
| !!! | GCAAGAGAGGTTTTGTTTGG+TGG | + | chr7_4:64116751-64116770 | Msa1170690:CDS | 45.0% |
| !!! | GAGGTTTTGTTTGGTGGTTC+GGG | + | chr7_4:64116757-64116776 | Msa1170690:CDS | 45.0% |
| ATATCCCCTCATTGCAGAGA+TGG | + | chr7_4:64116791-64116810 | Msa1170690:CDS | 45.0% | |
| TCAAGCCATCTCTGCAATGA+GGG | - | chr7_4:64116799-64116818 | None:intergenic | 45.0% | |
| AGAGATGGCTTGAGATTGCT+TGG | + | chr7_4:64116806-64116825 | Msa1170690:CDS | 45.0% | |
| GAGATGGCTTGAGATTGCTT+GGG | + | chr7_4:64116807-64116826 | Msa1170690:CDS | 45.0% | |
| GCTTGAGATTGCTTGGGAAA+AGG | + | chr7_4:64116813-64116832 | Msa1170690:CDS | 45.0% | |
| ! | CTTGCGTTCTTTTGCTCTTC+GGG | + | chr7_4:64116921-64116940 | Msa1170690:CDS | 45.0% |
| CAACATGCTGCTGACCAAAT+TGG | - | chr7_4:64117122-64117141 | None:intergenic | 45.0% | |
| GTGATCAGTGAGAAAACGTG+AGG | + | chr7_4:64117141-64117160 | Msa1170690:intron | 45.0% | |
| GGTCACTCGAGAACAATAGT+TGG | + | chr7_4:64117266-64117285 | Msa1170690:CDS | 45.0% | |
| GCAGACAAATTACGTGAGCA+GGG | - | chr7_4:64117349-64117368 | None:intergenic | 45.0% | |
| TTACAATGAGTGCGGAACTG+CGG | - | chr7_4:64117402-64117421 | None:intergenic | 45.0% | |
| GTGGCTTCTTCAGTGTATTC+CGG | - | chr7_4:64117610-64117629 | None:intergenic | 45.0% | |
| ACTGAAGAAGCCACAATACC+AGG | + | chr7_4:64117616-64117635 | Msa1170690:CDS | 45.0% | |
| CAGTTGTGTTACGTTGATCC+TGG | + | chr7_4:64117717-64117736 | Msa1170690:intron | 45.0% | |
| TACGTTGATCCTGGAATTGC+TGG | + | chr7_4:64117726-64117745 | Msa1170690:CDS | 45.0% | |
| TGAAGCTGAGAAGAGGGAAC+TGG | - | chr7_4:64115254-64115273 | None:intergenic | 50.0% | |
| !! | TAGGTGCCGATAAGTGGGAA+GGG | + | chr7_4:64115684-64115703 | Msa1170690:intron | 50.0% |
| AAGTGGGAAGGGTTGTGTGA+TGG | + | chr7_4:64115695-64115714 | Msa1170690:intron | 50.0% | |
| AGGGTTGTGTGATGGCTCAT+AGG | + | chr7_4:64115703-64115722 | Msa1170690:intron | 50.0% | |
| GAACAATCAGTCAGTGGCTC+GGG | + | chr7_4:64116415-64116434 | Msa1170690:CDS | 50.0% | |
| AACAATCAGTCAGTGGCTCG+GGG | + | chr7_4:64116416-64116435 | Msa1170690:CDS | 50.0% | |
| CATCCTCAGAATTGAGGCTC+TGG | - | chr7_4:64116663-64116682 | None:intergenic | 50.0% | |
| ! | AGCCTCAATTCTGAGGATGC+TGG | + | chr7_4:64116664-64116683 | Msa1170690:CDS | 50.0% |
| CTCTGCAATGAGGGGATATC+AGG | - | chr7_4:64116790-64116809 | None:intergenic | 50.0% | |
| CAAGCCATCTCTGCAATGAG+GGG | - | chr7_4:64116798-64116817 | None:intergenic | 50.0% | |
| CTCAAGCCATCTCTGCAATG+AGG | - | chr7_4:64116800-64116819 | None:intergenic | 50.0% | |
| TTCCAATTGAGCAGCTCCTG+GGG | - | chr7_4:64116848-64116867 | None:intergenic | 50.0% | |
| GTTCCAATTGAGCAGCTCCT+GGG | - | chr7_4:64116849-64116868 | None:intergenic | 50.0% | |
| TGTTCCAATTGAGCAGCTCC+TGG | - | chr7_4:64116850-64116869 | None:intergenic | 50.0% | |
| GGCAGACAAATTACGTGAGC+AGG | - | chr7_4:64117350-64117369 | None:intergenic | 50.0% | |
| CAAGCGTGTGAAACAGACAC+TGG | - | chr7_4:64117456-64117475 | None:intergenic | 50.0% | |
| GGACACGTGCTCCATGAATC+CGG | - | chr7_4:64115218-64115237 | None:intergenic | 55.0% | |
| ! | TGATCCTGTGCTGCTCCAAC+AGG | + | chr7_4:64115406-64115425 | Msa1170690:CDS | 55.0% |
| TGAACCTGTTGGAGCAGCAC+AGG | - | chr7_4:64115413-64115432 | None:intergenic | 55.0% | |
| ACGTGTTGGGTATGGCTCGT+AGG | + | chr7_4:64115665-64115684 | Msa1170690:intron | 55.0% | |
| !! | GCTCGTAGGTGCCGATAAGT+GGG | + | chr7_4:64115679-64115698 | Msa1170690:intron | 55.0% |
| !! | GTAGGTGCCGATAAGTGGGA+AGG | + | chr7_4:64115683-64115702 | Msa1170690:intron | 55.0% |
| TCGGGGCTTGAAGCAGTTTC+TGG | + | chr7_4:64116433-64116452 | Msa1170690:CDS | 55.0% | |
| ATGCTGGATGGGGTTGTGGA+TGG | + | chr7_4:64116680-64116699 | Msa1170690:CDS | 55.0% | |
| ACAGAGACCGGAAGCAAGAG+AGG | + | chr7_4:64116738-64116757 | Msa1170690:CDS | 55.0% | |
| ! | GAAAAGGGCTTTGATGCCCC+AGG | + | chr7_4:64116829-64116848 | Msa1170690:CDS | 55.0% |
| CGTGAGCAGGGTCCAAAACT+AGG | - | chr7_4:64117337-64117356 | None:intergenic | 55.0% | |
| TGATCCTGGAATTGCTGGCG+AGG | + | chr7_4:64117731-64117750 | Msa1170690:CDS | 55.0% | |
| AATTGCTGGCGAGGAGGAGA+TGG | + | chr7_4:64117740-64117759 | Msa1170690:CDS | 55.0% | |
| !! | GGCTCGTAGGTGCCGATAAG+TGG | + | chr7_4:64115678-64115697 | Msa1170690:intron | 60.0% |
| GAGGATGCTGGATGGGGTTG+TGG | + | chr7_4:64116676-64116695 | Msa1170690:CDS | 60.0% | |
| TGCCCCAGGAGCTGCTCAAT+TGG | + | chr7_4:64116843-64116862 | Msa1170690:CDS | 60.0% | |
| TCCTGGAATTGCTGGCGAGG+AGG | + | chr7_4:64117734-64117753 | Msa1170690:CDS | 60.0% | |
| TCCTCCTCGCCAGCAATTCC+AGG | - | chr7_4:64117738-64117757 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 64115209 | 64117803 | 64115209 | ID=Msa1170690;Name=Msa1170690 |
| chr7_4 | mRNA | 64115209 | 64117803 | 64115209 | ID=Msa1170690-mRNA-1;Parent=Msa1170690;Name=Msa1170690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|382 |
| chr7_4 | exon | 64115209 | 64115276 | 64115209 | ID=Msa1170690-mRNA-1:exon:20552;Parent=Msa1170690-mRNA-1 |
| chr7_4 | exon | 64115385 | 64115427 | 64115385 | ID=Msa1170690-mRNA-1:exon:20553;Parent=Msa1170690-mRNA-1 |
| chr7_4 | exon | 64116412 | 64117157 | 64116412 | ID=Msa1170690-mRNA-1:exon:20554;Parent=Msa1170690-mRNA-1 |
| chr7_4 | exon | 64117244 | 64117355 | 64117244 | ID=Msa1170690-mRNA-1:exon:20555;Parent=Msa1170690-mRNA-1 |
| chr7_4 | exon | 64117542 | 64117637 | 64117542 | ID=Msa1170690-mRNA-1:exon:20556;Parent=Msa1170690-mRNA-1 |
| chr7_4 | exon | 64117720 | 64117803 | 64117720 | ID=Msa1170690-mRNA-1:exon:20557;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64115209 | 64115276 | 64115209 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64115385 | 64115427 | 64115385 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64116412 | 64117157 | 64116412 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64117244 | 64117355 | 64117244 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64117542 | 64117637 | 64117542 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| chr7_4 | CDS | 64117720 | 64117803 | 64117720 | ID=Msa1170690-mRNA-1:cds;Parent=Msa1170690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
