Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438760 | XP_003602444.2 | 90.838 | 382 | 34 | 1 | 1 | 382 | 1 | 381 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438760 | sp|Q96AP4|ZUP1_HUMAN | 34.386 | 285 | 148 | 9 | 89 | 371 | 318 | 565 | 1.58e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438760 | G7J9Q3 | 90.838 | 382 | 34 | 1 | 1 | 382 | 1 | 381 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0438760 | Msa0472640 | 0.915388 | 6.247230e-85 | -8.615850e-47 |
| Msa0438760 | Msa0473120 | 0.920205 | 1.718214e-87 | -8.615850e-47 |
| Msa0438760 | Msa1170690 | 0.919976 | 2.293361e-87 | -8.615850e-47 |
| Msa0438760 | Msa1405960 | 0.903556 | 3.071237e-79 | -8.615850e-47 |
| Msa0358860 | Msa0438760 | 0.802079 | 6.649345e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438760 | MtrunA17_Chr3g0128361 | 90.838 | 382 | 34 | 1 | 1 | 382 | 1 | 381 | 0.0 | 721 |
| Msa0438760 | MtrunA17_Chr5g0428821 | 58.145 | 442 | 125 | 5 | 1 | 382 | 3 | 444 | 1.46e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438760 | AT5G24680.1 | 48.030 | 406 | 172 | 10 | 7 | 382 | 3 | 399 | 1.31e-110 | 329 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTCTTCTTTGAATTAT+AGG | 0.174767 | 3_3:-3496657 | None:intergenic |
| ATCATATAATCTCCTAGTTT+TGG | 0.229650 | 3_3:-3497117 | Msa0438760:CDS |
| CAACATGCTGCTGACCAAAT+TGG | 0.292474 | 3_3:+3497320 | None:intergenic |
| GATGAAAACGCAATCCAATT+TGG | 0.299607 | 3_3:-3497334 | Msa0438760:CDS |
| ACAACAGATTGGGATTCTTT+AGG | 0.304442 | 3_3:+3497475 | None:intergenic |
| AGATCACTAAAGCAGAAAAT+TGG | 0.308220 | 3_3:-3496879 | Msa0438760:CDS |
| TTGTTTACGGATCAACAAAA+TGG | 0.312701 | 3_3:-3497567 | Msa0438760:CDS |
| CGGGCAAGAATAGTTGATTT+TGG | 0.313545 | 3_3:-3497499 | Msa0438760:CDS |
| CAATTGGAACATGTTGTTTA+CGG | 0.316851 | 3_3:-3497580 | Msa0438760:CDS |
| TCCTCCTCGCCAGCAATTCC+AGG | 0.341681 | 3_3:+3496704 | None:intergenic |
| GGCCTTATTGAGAAATTGTT+TGG | 0.348733 | 3_3:-3497854 | Msa0438760:CDS |
| CTCTGCAATGAGGGGATATC+AGG | 0.349373 | 3_3:+3497652 | None:intergenic |
| CTCCAAACAATTTCTCAATA+AGG | 0.353127 | 3_3:+3497852 | None:intergenic |
| CTTGAGATTGCTTGGGAAAA+GGG | 0.361603 | 3_3:-3497625 | Msa0438760:CDS |
| GTGGCTTCTTCAGTGTATTC+CGG | 0.362191 | 3_3:+3496832 | None:intergenic |
| AACTCCATTCTGTTGATGAT+TGG | 0.367977 | 3_3:+3497142 | None:intergenic |
| TGATCCTGTGCTGCTCCAAC+AGG | 0.376439 | 3_3:-3499033 | Msa0438760:intron |
| CAATTCTGAGGATGCTGGAT+GGG | 0.379701 | 3_3:-3497770 | Msa0438760:CDS |
| AAAGAATCCCAATCTGTTGT+AGG | 0.384082 | 3_3:-3497472 | Msa0438760:CDS |
| GAGGATGCTGGATGGGGTTG+TGG | 0.386116 | 3_3:-3497763 | Msa0438760:CDS |
| CAAAGTTGAAGCGGGTTTGA+TGG | 0.393516 | 3_3:-3497875 | Msa0438760:CDS |
| GCTTGAGATTGCTTGGGAAA+AGG | 0.396568 | 3_3:-3497626 | Msa0438760:CDS |
| TACCCCAGGAGCTGCTCAAT+TGG | 0.402265 | 3_3:-3497596 | Msa0438760:CDS |
| TACGTTGATCCTGGAATTGC+TGG | 0.403330 | 3_3:-3496713 | Msa0438760:CDS |
| AACAAAACCTCTCTTGCTTC+CGG | 0.406451 | 3_3:+3497694 | None:intergenic |
| GAACAATCAGTCAGTGGCTC+GGG | 0.407768 | 3_3:-3498024 | Msa0438760:CDS |
| AAAACATGGATCCGGATTCA+TGG | 0.416705 | 3_3:-3499238 | None:intergenic |
| AGATAATGGGGAATGCAAAA+TGG | 0.422905 | 3_3:-3497947 | Msa0438760:CDS |
| GGTGAGACTAGTAGAGATAA+TGG | 0.423295 | 3_3:-3497961 | Msa0438760:CDS |
| GGCAGACAAATTACGTGAGC+AGG | 0.434535 | 3_3:+3497092 | None:intergenic |
| GTGAGACTAGTAGAGATAAT+GGG | 0.435686 | 3_3:-3497960 | Msa0438760:CDS |
| TGTTCCAATTGAGCAGCTCC+TGG | 0.440162 | 3_3:+3497592 | None:intergenic |
| CACTTGTTCCTACAACAGAT+TGG | 0.447381 | 3_3:+3497464 | None:intergenic |
| ACTTGTTCCTACAACAGATT+GGG | 0.448713 | 3_3:+3497465 | None:intergenic |
| CAGTTGTGTTACGTTGATCC+TGG | 0.449229 | 3_3:-3496722 | Msa0438760:CDS |
| CATCCTCAGAATTGAGGCTC+TGG | 0.457496 | 3_3:+3497779 | None:intergenic |
| TTCCCTCTTCTCAGCTTCAA+TGG | 0.461872 | 3_3:-3499187 | Msa0438760:intron |
| GGGAACTGGTAAATCACAAA+AGG | 0.466526 | 3_3:+3499205 | None:intergenic |
| CCTTTGTACTTTCAACATGA+TGG | 0.472319 | 3_3:-3497194 | Msa0438760:CDS |
| CTGGAAATGATCAATGTAAC+CGG | 0.474736 | 3_3:+3497798 | None:intergenic |
| CGTGAGCAGGGTCCAAAACT+AGG | 0.476174 | 3_3:+3497105 | None:intergenic |
| AGCCTCAATTCTGAGGATGC+TGG | 0.481179 | 3_3:-3497775 | Msa0438760:CDS |
| TGAACCTGTTGGAGCAGCAC+AGG | 0.482656 | 3_3:+3499029 | None:intergenic |
| GGACACGTGCTCCATGAATC+CGG | 0.486259 | 3_3:+3499227 | None:intergenic |
| AGAGATGGCTTGAGATTGCT+TGG | 0.487071 | 3_3:-3497633 | Msa0438760:CDS |
| ATGCTGGATGGGGTTGTGGA+TGG | 0.501534 | 3_3:-3497759 | Msa0438760:CDS |
| AATTCTGAGGATGCTGGATG+GGG | 0.505505 | 3_3:-3497769 | Msa0438760:CDS |
| AATTGCTGGCGAGGAGGAGA+TGG | 0.507256 | 3_3:-3496699 | Msa0438760:CDS |
| TCAAGCCATCTCTGCAATGA+GGG | 0.517092 | 3_3:+3497643 | None:intergenic |
| TGTCTGTAAACCAATTAAGC+AGG | 0.517724 | 3_3:+3497912 | None:intergenic |
| TGAAGCTGAGAAGAGGGAAC+TGG | 0.518833 | 3_3:+3499191 | None:intergenic |
| GTTCCAATTGAGCAGCTCCT+GGG | 0.518852 | 3_3:+3497593 | None:intergenic |
| CAAGAAAGAAAACATGGATC+CGG | 0.520196 | 3_3:-3499246 | None:intergenic |
| GGTCACTCGAGAACAATAGT+TGG | 0.526319 | 3_3:-3497173 | Msa0438760:CDS |
| ATATCCCCTCATTGCAGAGA+TGG | 0.533952 | 3_3:-3497648 | Msa0438760:CDS |
| CAAGCCAATCATCAACAGAA+TGG | 0.540472 | 3_3:-3497146 | Msa0438760:CDS |
| AACTTCTACAAAGTTGAAGC+GGG | 0.540979 | 3_3:-3497883 | Msa0438760:CDS |
| CTCAAGCCATCTCTGCAATG+AGG | 0.542374 | 3_3:+3497642 | None:intergenic |
| TGAACAATCAGTCAGTGGCT+CGG | 0.544843 | 3_3:-3498025 | Msa0438760:CDS |
| GAGATTGTAACAATTGCCAC+GGG | 0.551844 | 3_3:-3497984 | Msa0438760:CDS |
| ATCCAGCATCCTCAGAATTG+AGG | 0.561074 | 3_3:+3497773 | None:intergenic |
| TGAGACTAGTAGAGATAATG+GGG | 0.563549 | 3_3:-3497959 | Msa0438760:CDS |
| ACTGAAGAAGCCACAATACC+AGG | 0.565663 | 3_3:-3496823 | Msa0438760:intron |
| TCAATTCTGAGGATGCTGGA+TGG | 0.569675 | 3_3:-3497771 | Msa0438760:CDS |
| AGAAGTAAGACCTGGTATTG+TGG | 0.570767 | 3_3:+3496813 | None:intergenic |
| GAAAAGGGCTTTGATACCCC+AGG | 0.570819 | 3_3:-3497610 | Msa0438760:CDS |
| TACCATTGAAGCTGAGAAGA+GGG | 0.572663 | 3_3:+3499185 | None:intergenic |
| GGAGATTGTAACAATTGCCA+CGG | 0.573402 | 3_3:-3497985 | Msa0438760:CDS |
| ACAGAGACCGGAAGCAAGAG+AGG | 0.575871 | 3_3:-3497701 | Msa0438760:CDS |
| GGAACTGGTAAATCACAAAA+GGG | 0.580231 | 3_3:+3499206 | None:intergenic |
| TTTCCAGAGCCTCAATTCTG+AGG | 0.581276 | 3_3:-3497782 | Msa0438760:CDS |
| AGGATCATGAAAATGAGCAT+TGG | 0.590530 | 3_3:+3499049 | None:intergenic |
| TCACTTACTAGCACAGAGAC+CGG | 0.600965 | 3_3:-3497713 | Msa0438760:CDS |
| CACTAAAGCAGAAAATTGGA+TGG | 0.601257 | 3_3:-3496875 | Msa0438760:CDS |
| CAACTTCTACAAAGTTGAAG+CGG | 0.601423 | 3_3:-3497884 | Msa0438760:CDS |
| GCAGACAAATTACGTGAGCA+GGG | 0.605295 | 3_3:+3497093 | None:intergenic |
| TCCTGGAATTGCTGGCGAGG+AGG | 0.610858 | 3_3:-3496705 | Msa0438760:CDS |
| GAGATGGCTTGAGATTGCTT+GGG | 0.611796 | 3_3:-3497632 | Msa0438760:CDS |
| AAGTTCTCATGAATTTCGTG+TGG | 0.614055 | 3_3:-3497369 | Msa0438760:CDS |
| TTCCAATTGAGCAGCTCCTG+GGG | 0.617879 | 3_3:+3497594 | None:intergenic |
| TACGGATCAACAAAATGGAT+AGG | 0.621024 | 3_3:-3497562 | Msa0438760:CDS |
| TGATCCTGGAATTGCTGGCG+AGG | 0.622185 | 3_3:-3496708 | Msa0438760:CDS |
| CAAGCCATCTCTGCAATGAG+GGG | 0.632641 | 3_3:+3497644 | None:intergenic |
| AACAATCAGTCAGTGGCTCG+GGG | 0.634924 | 3_3:-3498023 | Msa0438760:CDS |
| GTACCATTGAAGCTGAGAAG+AGG | 0.635253 | 3_3:+3499184 | None:intergenic |
| CAGAGTGAACAATCAGTCAG+TGG | 0.650150 | 3_3:-3498030 | Msa0438760:CDS |
| CCATCATGTTGAAAGTACAA+AGG | 0.685122 | 3_3:+3497194 | None:intergenic |
| GATTGTAACAATTGCCACGG+GGG | 0.709327 | 3_3:-3497982 | Msa0438760:CDS |
| AGATTGTAACAATTGCCACG+GGG | 0.754013 | 3_3:-3497983 | Msa0438760:CDS |
| AACAAGTGTTGATAACACCG+TGG | 0.773466 | 3_3:-3497449 | Msa0438760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATAAAAAGTA+TGG | + | chr3_3:3498971-3498990 | None:intergenic | 10.0% |
| !! | CAACTTGTATTTAAATATTA+CGG | + | chr3_3:3497211-3497230 | None:intergenic | 15.0% |
| !! | AACTAAATATTAAAAGAGTA+AGG | + | chr3_3:3498823-3498842 | None:intergenic | 15.0% |
| !! | ATAACTTATACATAAACACT+TGG | - | chr3_3:3497067-3497086 | Msa0438760:intron | 20.0% |
| !! | TTATTATCACTGAAAACTTA+AGG | + | chr3_3:3497246-3497265 | None:intergenic | 20.0% |
| !!! | GCTATTTTAAGTTTCAAAAT+AGG | + | chr3_3:3497540-3497559 | None:intergenic | 20.0% |
| !! | ATTGTTAAAGATAATCATAG+TGG | + | chr3_3:3497668-3497687 | None:intergenic | 20.0% |
| !! | CAGTAAATTTAAAAAAAGTG+AGG | - | chr3_3:3498493-3498512 | Msa0438760:intron | 20.0% |
| !!! | TTAAATTTTGAAAGCTTTGT+CGG | - | chr3_3:3498669-3498688 | Msa0438760:intron | 20.0% |
| !! | AGTTTTCAGTGATAATAAGA+CGG | - | chr3_3:3497248-3497267 | Msa0438760:intron | 25.0% |
| ! | CAAAACAGTTTATCCAAATA+AGG | - | chr3_3:3497409-3497428 | Msa0438760:CDS | 25.0% |
| ! | AAATTACTGAGTGATAGTTT+AGG | + | chr3_3:3497457-3497476 | None:intergenic | 25.0% |
| ! | TTCAAAATAGGAGAAAATGA+TGG | + | chr3_3:3497528-3497547 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAACGGAAAA+GGG | + | chr3_3:3497746-3497765 | None:intergenic | 25.0% |
| ! | AACTTATAATCTAACGGAAA+AGG | + | chr3_3:3497747-3497766 | None:intergenic | 25.0% |
| ! | CATCAGAACTTATAATCTAA+CGG | + | chr3_3:3497753-3497772 | None:intergenic | 25.0% |
| ! | TTTATTTGCATATTCAGATG+AGG | - | chr3_3:3497792-3497811 | Msa0438760:CDS | 25.0% |
| !!! | AATTCAAAAAGCATTTTGTC+CGG | - | chr3_3:3498074-3498093 | Msa0438760:intron | 25.0% |
| !!! | ATCATTTCTTGTTTTATCCA+CGG | + | chr3_3:3498462-3498481 | None:intergenic | 25.0% |
| !! | ATCATATAATCTCCTAGTTT+TGG | - | chr3_3:3498774-3498793 | Msa0438760:intron | 25.0% |
| ! | AATTGAAATTACAATGAGTG+CGG | + | chr3_3:3498862-3498881 | None:intergenic | 25.0% |
| ! | ATGGCAAAAACTCATAAAAA+AGG | - | chr3_3:3499035-3499054 | Msa0438760:CDS | 25.0% |
| ! | TGGCAAAAACTCATAAAAAA+GGG | - | chr3_3:3499036-3499055 | Msa0438760:CDS | 25.0% |
| ! | TGATAAATGAGTATGTTTGA+CGG | - | chr3_3:3499132-3499151 | Msa0438760:intron | 25.0% |
| AATTGAGGAAGAAGAAGAAA+GGG | + | chr3_3:3496756-3496775 | None:intergenic | 30.0% | |
| ATCTTTCTCCAATAACTGAT+TGG | - | chr3_3:3496884-3496903 | Msa0438760:CDS | 30.0% | |
| AATCCAATCCAATCAGTTAT+TGG | + | chr3_3:3496895-3496914 | None:intergenic | 30.0% | |
| TAAGCTGAAAACAACTAATG+AGG | + | chr3_3:3496986-3497005 | None:intergenic | 30.0% | |
| AGTGATAATAAGACGGAAAA+TGG | - | chr3_3:3497255-3497274 | Msa0438760:intron | 30.0% | |
| TTAATTATAGTCAGAGACGT+AGG | - | chr3_3:3497291-3497310 | Msa0438760:intron | 30.0% | |
| GTTTATCCAAATAAGGCTTA+AGG | - | chr3_3:3497416-3497435 | Msa0438760:CDS | 30.0% | |
| !! | TCAAAACCTTAAGCCTTATT+TGG | + | chr3_3:3497425-3497444 | None:intergenic | 30.0% |
| GAAAAAATCTCCTGCTTAAT+TGG | - | chr3_3:3497969-3497988 | Msa0438760:CDS | 30.0% | |
| CTCCAAACAATTTCTCAATA+AGG | + | chr3_3:3498042-3498061 | None:intergenic | 30.0% | |
| ! | CAATTGGAACATGTTGTTTA+CGG | - | chr3_3:3498311-3498330 | Msa0438760:intron | 30.0% |
| TTGTTTACGGATCAACAAAA+TGG | - | chr3_3:3498324-3498343 | Msa0438760:intron | 30.0% | |
| AAGAAACAAAATTGTCTGTG+TGG | + | chr3_3:3498644-3498663 | None:intergenic | 30.0% | |
| AGATCACTAAAGCAGAAAAT+TGG | - | chr3_3:3499012-3499031 | Msa0438760:intron | 30.0% | |
| AAAAACTCATAAAAAAGGGC+CGG | - | chr3_3:3499040-3499059 | Msa0438760:CDS | 30.0% | |
| TTGTTAAAAGAAGTAAGACC+TGG | + | chr3_3:3499089-3499108 | None:intergenic | 30.0% | |
| GGAACTGGTAAATCACAAAA+GGG | + | chr3_3:3496688-3496707 | None:intergenic | 35.0% | |
| CAATTGAGGAAGAAGAAGAA+AGG | + | chr3_3:3496757-3496776 | None:intergenic | 35.0% | |
| ATCATCATCGATGTCAATTG+AGG | + | chr3_3:3496771-3496790 | None:intergenic | 35.0% | |
| TTCTACATACATGTACATGC+AGG | - | chr3_3:3496815-3496834 | Msa0438760:intron | 35.0% | |
| AGGATCATGAAAATGAGCAT+TGG | + | chr3_3:3496845-3496864 | None:intergenic | 35.0% | |
| TCTCCAATAACTGATTGGAT+TGG | - | chr3_3:3496889-3496908 | Msa0438760:CDS | 35.0% | |
| AAACACGTGATTAAACGTGT+TGG | - | chr3_3:3497103-3497122 | Msa0438760:intron | 35.0% | |
| AACACGTGATTAAACGTGTT+GGG | - | chr3_3:3497104-3497123 | Msa0438760:intron | 35.0% | |
| ! | TCATGAGCATTGTTGTAAGT+TGG | - | chr3_3:3497184-3497203 | Msa0438760:CDS | 35.0% |
| TTAACACAACTCAGTACAGA+AGG | + | chr3_3:3497383-3497402 | None:intergenic | 35.0% | |
| GTGAGACTAGTAGAGATAAT+GGG | - | chr3_3:3497931-3497950 | Msa0438760:CDS | 35.0% | |
| TGAGACTAGTAGAGATAATG+GGG | - | chr3_3:3497932-3497951 | Msa0438760:CDS | 35.0% | |
| !! | AGATAATGGGGAATGCAAAA+TGG | - | chr3_3:3497944-3497963 | Msa0438760:CDS | 35.0% |
| TGTCTGTAAACCAATTAAGC+AGG | + | chr3_3:3497982-3498001 | None:intergenic | 35.0% | |
| CAACTTCTACAAAGTTGAAG+CGG | - | chr3_3:3498007-3498026 | Msa0438760:CDS | 35.0% | |
| AACTTCTACAAAGTTGAAGC+GGG | - | chr3_3:3498008-3498027 | Msa0438760:CDS | 35.0% | |
| !! | GGCCTTATTGAGAAATTGTT+TGG | - | chr3_3:3498037-3498056 | Msa0438760:intron | 35.0% |
| CTGGAAATGATCAATGTAAC+CGG | + | chr3_3:3498096-3498115 | None:intergenic | 35.0% | |
| TACGGATCAACAAAATGGAT+AGG | - | chr3_3:3498329-3498348 | Msa0438760:intron | 35.0% | |
| ACAACAGATTGGGATTCTTT+AGG | + | chr3_3:3498419-3498438 | None:intergenic | 35.0% | |
| AAAGAATCCCAATCTGTTGT+AGG | - | chr3_3:3498419-3498438 | Msa0438760:intron | 35.0% | |
| ACTTGTTCCTACAACAGATT+GGG | + | chr3_3:3498429-3498448 | None:intergenic | 35.0% | |
| AAGTTCTCATGAATTTCGTG+TGG | - | chr3_3:3498522-3498541 | Msa0438760:intron | 35.0% | |
| GATGAAAACGCAATCCAATT+TGG | - | chr3_3:3498557-3498576 | Msa0438760:intron | 35.0% | |
| ! | CCATCATGTTGAAAGTACAA+AGG | + | chr3_3:3498700-3498719 | None:intergenic | 35.0% |
| CCTTTGTACTTTCAACATGA+TGG | - | chr3_3:3498697-3498716 | Msa0438760:intron | 35.0% | |
| !! | AACTCCATTCTGTTGATGAT+TGG | + | chr3_3:3498752-3498771 | None:intergenic | 35.0% |
| CACTAAAGCAGAAAATTGGA+TGG | - | chr3_3:3499016-3499035 | Msa0438760:intron | 35.0% | |
| GGGAACTGGTAAATCACAAA+AGG | + | chr3_3:3496689-3496708 | None:intergenic | 40.0% | |
| TACCATTGAAGCTGAGAAGA+GGG | + | chr3_3:3496709-3496728 | None:intergenic | 40.0% | |
| TTGGAGAAAGATGAACCTGT+TGG | + | chr3_3:3496876-3496895 | None:intergenic | 40.0% | |
| GTGATTAAACGTGTTGGGTA+TGG | - | chr3_3:3497109-3497128 | Msa0438760:CDS | 40.0% | |
| GGAGATTGTAACAATTGCCA+CGG | - | chr3_3:3497906-3497925 | Msa0438760:CDS | 40.0% | |
| GAGATTGTAACAATTGCCAC+GGG | - | chr3_3:3497907-3497926 | Msa0438760:CDS | 40.0% | |
| AGATTGTAACAATTGCCACG+GGG | - | chr3_3:3497908-3497927 | Msa0438760:CDS | 40.0% | |
| GGTGAGACTAGTAGAGATAA+TGG | - | chr3_3:3497930-3497949 | Msa0438760:CDS | 40.0% | |
| AACAAAACCTCTCTTGCTTC+CGG | + | chr3_3:3498200-3498219 | None:intergenic | 40.0% | |
| !!! | GAAGCAAGAGAGGTTTTGTT+TGG | - | chr3_3:3498200-3498219 | Msa0438760:intron | 40.0% |
| !!! | AGAGGTTTTGTTTGGTGGTT+CGG | - | chr3_3:3498208-3498227 | Msa0438760:intron | 40.0% |
| CTTGAGATTGCTTGGGAAAA+GGG | - | chr3_3:3498266-3498285 | Msa0438760:intron | 40.0% | |
| ! | TCTTGCGTTCTTTTGCTCTT+CGG | - | chr3_3:3498372-3498391 | Msa0438760:intron | 40.0% |
| !! | CGGGCAAGAATAGTTGATTT+TGG | - | chr3_3:3498392-3498411 | Msa0438760:intron | 40.0% |
| CACTTGTTCCTACAACAGAT+TGG | + | chr3_3:3498430-3498449 | None:intergenic | 40.0% | |
| !! | AACAAGTGTTGATAACACCG+TGG | - | chr3_3:3498442-3498461 | Msa0438760:intron | 40.0% |
| TGATCAGTGAGAAAACGTGA+GGG | - | chr3_3:3498594-3498613 | Msa0438760:intron | 40.0% | |
| !! | TTTTGAAAGCTTTGTCGGAC+AGG | - | chr3_3:3498674-3498693 | Msa0438760:intron | 40.0% |
| CAAGCCAATCATCAACAGAA+TGG | - | chr3_3:3498745-3498764 | Msa0438760:intron | 40.0% | |
| AGAAGTAAGACCTGGTATTG+TGG | + | chr3_3:3499081-3499100 | None:intergenic | 40.0% | |
| TTCCCTCTTCTCAGCTTCAA+TGG | - | chr3_3:3496704-3496723 | Msa0438760:CDS | 45.0% | |
| GTACCATTGAAGCTGAGAAG+AGG | + | chr3_3:3496710-3496729 | None:intergenic | 45.0% | |
| ACACAACCCTTCCCACTTAT+CGG | + | chr3_3:3497145-3497164 | None:intergenic | 45.0% | |
| TTGTGTGATGGCTCATAGGT+AGG | - | chr3_3:3497159-3497178 | Msa0438760:CDS | 45.0% | |
| TGTGTGATGGCTCATAGGTA+GGG | - | chr3_3:3497160-3497179 | Msa0438760:CDS | 45.0% | |
| AGAAGATGCAAGCGCAAGTT+GGG | + | chr3_3:3497701-3497720 | None:intergenic | 45.0% | |
| AAGAAGATGCAAGCGCAAGT+TGG | + | chr3_3:3497702-3497721 | None:intergenic | 45.0% | |
| CAGAGTGAACAATCAGTCAG+TGG | - | chr3_3:3497861-3497880 | Msa0438760:CDS | 45.0% | |
| TGAACAATCAGTCAGTGGCT+CGG | - | chr3_3:3497866-3497885 | Msa0438760:CDS | 45.0% | |
| GATTGTAACAATTGCCACGG+GGG | - | chr3_3:3497909-3497928 | Msa0438760:CDS | 45.0% | |
| ! | CAAAGTTGAAGCGGGTTTGA+TGG | - | chr3_3:3498016-3498035 | Msa0438760:CDS | 45.0% |
| TTTCCAGAGCCTCAATTCTG+AGG | - | chr3_3:3498109-3498128 | Msa0438760:intron | 45.0% | |
| ATCCAGCATCCTCAGAATTG+AGG | + | chr3_3:3498121-3498140 | None:intergenic | 45.0% | |
| ! | TCAATTCTGAGGATGCTGGA+TGG | - | chr3_3:3498120-3498139 | Msa0438760:intron | 45.0% |
| ! | CAATTCTGAGGATGCTGGAT+GGG | - | chr3_3:3498121-3498140 | Msa0438760:intron | 45.0% |
| ! | AATTCTGAGGATGCTGGATG+GGG | - | chr3_3:3498122-3498141 | Msa0438760:intron | 45.0% |
| TCACTTACTAGCACAGAGAC+CGG | - | chr3_3:3498178-3498197 | Msa0438760:intron | 45.0% | |
| !!! | GCAAGAGAGGTTTTGTTTGG+TGG | - | chr3_3:3498203-3498222 | Msa0438760:intron | 45.0% |
| !!! | GAGGTTTTGTTTGGTGGTTC+GGG | - | chr3_3:3498209-3498228 | Msa0438760:intron | 45.0% |
| ATATCCCCTCATTGCAGAGA+TGG | - | chr3_3:3498243-3498262 | Msa0438760:intron | 45.0% | |
| TCAAGCCATCTCTGCAATGA+GGG | + | chr3_3:3498251-3498270 | None:intergenic | 45.0% | |
| AGAGATGGCTTGAGATTGCT+TGG | - | chr3_3:3498258-3498277 | Msa0438760:intron | 45.0% | |
| GAGATGGCTTGAGATTGCTT+GGG | - | chr3_3:3498259-3498278 | Msa0438760:intron | 45.0% | |
| GCTTGAGATTGCTTGGGAAA+AGG | - | chr3_3:3498265-3498284 | Msa0438760:intron | 45.0% | |
| ! | CTTGCGTTCTTTTGCTCTTC+GGG | - | chr3_3:3498373-3498392 | Msa0438760:intron | 45.0% |
| CAACATGCTGCTGACCAAAT+TGG | + | chr3_3:3498574-3498593 | None:intergenic | 45.0% | |
| GTGATCAGTGAGAAAACGTG+AGG | - | chr3_3:3498593-3498612 | Msa0438760:intron | 45.0% | |
| GGTCACTCGAGAACAATAGT+TGG | - | chr3_3:3498718-3498737 | Msa0438760:intron | 45.0% | |
| GCAGACAAATTACGTGAGCA+GGG | + | chr3_3:3498801-3498820 | None:intergenic | 45.0% | |
| TTACAATGAGTGCGGAACTG+CGG | + | chr3_3:3498854-3498873 | None:intergenic | 45.0% | |
| GTGGCTTCTTCAGTGTATTC+CGG | + | chr3_3:3499062-3499081 | None:intergenic | 45.0% | |
| ACTGAAGAAGCCACAATACC+AGG | - | chr3_3:3499068-3499087 | Msa0438760:intron | 45.0% | |
| CAGTTGTGTTACGTTGATCC+TGG | - | chr3_3:3499169-3499188 | Msa0438760:intron | 45.0% | |
| TACGTTGATCCTGGAATTGC+TGG | - | chr3_3:3499178-3499197 | Msa0438760:intron | 45.0% | |
| TGAAGCTGAGAAGAGGGAAC+TGG | + | chr3_3:3496703-3496722 | None:intergenic | 50.0% | |
| !! | TAGGTGCCGATAAGTGGGAA+GGG | - | chr3_3:3497136-3497155 | Msa0438760:CDS | 50.0% |
| AAGTGGGAAGGGTTGTGTGA+TGG | - | chr3_3:3497147-3497166 | Msa0438760:CDS | 50.0% | |
| AGGGTTGTGTGATGGCTCAT+AGG | - | chr3_3:3497155-3497174 | Msa0438760:CDS | 50.0% | |
| GAACAATCAGTCAGTGGCTC+GGG | - | chr3_3:3497867-3497886 | Msa0438760:CDS | 50.0% | |
| AACAATCAGTCAGTGGCTCG+GGG | - | chr3_3:3497868-3497887 | Msa0438760:CDS | 50.0% | |
| !! | TCGGGGCTTGAAGCATTTTC+TGG | - | chr3_3:3497885-3497904 | Msa0438760:CDS | 50.0% |
| CATCCTCAGAATTGAGGCTC+TGG | + | chr3_3:3498115-3498134 | None:intergenic | 50.0% | |
| ! | AGCCTCAATTCTGAGGATGC+TGG | - | chr3_3:3498116-3498135 | Msa0438760:intron | 50.0% |
| CTCTGCAATGAGGGGATATC+AGG | + | chr3_3:3498242-3498261 | None:intergenic | 50.0% | |
| CAAGCCATCTCTGCAATGAG+GGG | + | chr3_3:3498250-3498269 | None:intergenic | 50.0% | |
| CTCAAGCCATCTCTGCAATG+AGG | + | chr3_3:3498252-3498271 | None:intergenic | 50.0% | |
| ! | GAAAAGGGCTTTGATACCCC+AGG | - | chr3_3:3498281-3498300 | Msa0438760:intron | 50.0% |
| TTCCAATTGAGCAGCTCCTG+GGG | + | chr3_3:3498300-3498319 | None:intergenic | 50.0% | |
| GTTCCAATTGAGCAGCTCCT+GGG | + | chr3_3:3498301-3498320 | None:intergenic | 50.0% | |
| TGTTCCAATTGAGCAGCTCC+TGG | + | chr3_3:3498302-3498321 | None:intergenic | 50.0% | |
| GGCAGACAAATTACGTGAGC+AGG | + | chr3_3:3498802-3498821 | None:intergenic | 50.0% | |
| CAAGCGTGTGAAACAGACAC+TGG | + | chr3_3:3498908-3498927 | None:intergenic | 50.0% | |
| GGACACGTGCTCCATGAATC+CGG | + | chr3_3:3496667-3496686 | None:intergenic | 55.0% | |
| ! | TGATCCTGTGCTGCTCCAAC+AGG | - | chr3_3:3496858-3496877 | Msa0438760:CDS | 55.0% |
| TGAACCTGTTGGAGCAGCAC+AGG | + | chr3_3:3496865-3496884 | None:intergenic | 55.0% | |
| ACGTGTTGGGTATGGCTCGT+AGG | - | chr3_3:3497117-3497136 | Msa0438760:CDS | 55.0% | |
| !! | GCTCGTAGGTGCCGATAAGT+GGG | - | chr3_3:3497131-3497150 | Msa0438760:CDS | 55.0% |
| !! | GTAGGTGCCGATAAGTGGGA+AGG | - | chr3_3:3497135-3497154 | Msa0438760:CDS | 55.0% |
| ATGCTGGATGGGGTTGTGGA+TGG | - | chr3_3:3498132-3498151 | Msa0438760:intron | 55.0% | |
| ACAGAGACCGGAAGCAAGAG+AGG | - | chr3_3:3498190-3498209 | Msa0438760:intron | 55.0% | |
| TACCCCAGGAGCTGCTCAAT+TGG | - | chr3_3:3498295-3498314 | Msa0438760:intron | 55.0% | |
| CGTGAGCAGGGTCCAAAACT+AGG | + | chr3_3:3498789-3498808 | None:intergenic | 55.0% | |
| TGATCCTGGAATTGCTGGCG+AGG | - | chr3_3:3499183-3499202 | Msa0438760:intron | 55.0% | |
| AATTGCTGGCGAGGAGGAGA+TGG | - | chr3_3:3499192-3499211 | Msa0438760:CDS | 55.0% | |
| !! | GGCTCGTAGGTGCCGATAAG+TGG | - | chr3_3:3497130-3497149 | Msa0438760:CDS | 60.0% |
| ! | CTCTACTAGTCTCACCCCCG+TGG | + | chr3_3:3497926-3497945 | None:intergenic | 60.0% |
| GAGGATGCTGGATGGGGTTG+TGG | - | chr3_3:3498128-3498147 | Msa0438760:intron | 60.0% | |
| TCCTGGAATTGCTGGCGAGG+AGG | - | chr3_3:3499186-3499205 | Msa0438760:intron | 60.0% | |
| TCCTCCTCGCCAGCAATTCC+AGG | + | chr3_3:3499190-3499209 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 3496658 | 3499255 | 3496658 | ID=Msa0438760;Name=Msa0438760 |
| chr3_3 | mRNA | 3496658 | 3499255 | 3496658 | ID=Msa0438760-mRNA-1;Parent=Msa0438760;Name=Msa0438760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|382 |
| chr3_3 | exon | 3499188 | 3499255 | 3499188 | ID=Msa0438760-mRNA-1:exon:888;Parent=Msa0438760-mRNA-1 |
| chr3_3 | exon | 3499034 | 3499076 | 3499034 | ID=Msa0438760-mRNA-1:exon:887;Parent=Msa0438760-mRNA-1 |
| chr3_3 | exon | 3497304 | 3498049 | 3497304 | ID=Msa0438760-mRNA-1:exon:886;Parent=Msa0438760-mRNA-1 |
| chr3_3 | exon | 3497106 | 3497217 | 3497106 | ID=Msa0438760-mRNA-1:exon:885;Parent=Msa0438760-mRNA-1 |
| chr3_3 | exon | 3496824 | 3496919 | 3496824 | ID=Msa0438760-mRNA-1:exon:884;Parent=Msa0438760-mRNA-1 |
| chr3_3 | exon | 3496658 | 3496741 | 3496658 | ID=Msa0438760-mRNA-1:exon:883;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3499188 | 3499255 | 3499188 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3499034 | 3499076 | 3499034 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3497304 | 3498049 | 3497304 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3497106 | 3497217 | 3497106 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3496824 | 3496919 | 3496824 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| chr3_3 | CDS | 3496658 | 3496741 | 3496658 | ID=Msa0438760-mRNA-1:cds;Parent=Msa0438760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
