Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472640 | XP_003602444.2 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472640 | sp|Q96AP4|ZUP1_HUMAN | 34.386 | 285 | 148 | 9 | 89 | 371 | 318 | 565 | 1.66e-36 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472640 | G7J9Q3 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006040 | Msa0472640 | 0.800549 | 1.368320e-48 | -8.615850e-47 |
| Msa0036160 | Msa0472640 | 0.814896 | 1.219967e-51 | -8.615850e-47 |
| Msa0438760 | Msa0472640 | 0.915388 | 6.247230e-85 | -8.615850e-47 |
| Msa0472640 | Msa0473120 | 0.964933 | 5.915742e-124 | -8.615850e-47 |
| Msa0472640 | Msa0793380 | 0.800008 | 1.762935e-48 | -8.615850e-47 |
| Msa0472640 | Msa1012830 | 0.801827 | 7.493703e-49 | -8.615850e-47 |
| Msa0472640 | Msa1170690 | 0.993433 | 1.056091e-199 | -8.615850e-47 |
| Msa0472640 | Msa1405960 | 0.977027 | 5.758452e-143 | -8.615850e-47 |
| Msa0358860 | Msa0472640 | 0.807811 | 4.212829e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472640 | MtrunA17_Chr3g0128361 | 91.623 | 382 | 31 | 1 | 1 | 382 | 1 | 381 | 0.0 | 729 |
| Msa0472640 | MtrunA17_Chr5g0428821 | 58.371 | 442 | 124 | 5 | 1 | 382 | 3 | 444 | 0.0 | 512 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0472640 | AT5G24680.1 | 48.030 | 406 | 172 | 10 | 7 | 382 | 3 | 399 | 1.15e-110 | 330 |
Find 92 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTCTTCTTTGAATTAT+AGG | 0.174767 | 3_3:+75062893 | Msa0472640:CDS |
| TCGGGGCTTGAAGCAGTTTC+TGG | 0.229564 | 3_3:+75061544 | Msa0472640:CDS |
| ATCATATAATCTCCTAGTTT+TGG | 0.229650 | 3_3:+75062433 | Msa0472640:CDS |
| CAACATGCTGCTGACCAAAT+TGG | 0.292474 | 3_3:-75062230 | None:intergenic |
| GATGAAAACGCAATCCAATT+TGG | 0.299607 | 3_3:+75062216 | Msa0472640:CDS |
| ACAACAGATTGGGATTCTTT+AGG | 0.304442 | 3_3:-75062075 | None:intergenic |
| AGATCACTAAAGCAGAAAAT+TGG | 0.308220 | 3_3:+75062671 | Msa0472640:CDS |
| TTGTTTACGGATCAACAAAA+TGG | 0.312701 | 3_3:+75061983 | Msa0472640:CDS |
| CGGGCAAGAATAGTTGATTT+TGG | 0.313545 | 3_3:+75062051 | Msa0472640:CDS |
| CAATTGGAACATGTTGTTTA+CGG | 0.316851 | 3_3:+75061970 | Msa0472640:CDS |
| TCCTCCTCGCCAGCAATTCC+AGG | 0.341681 | 3_3:-75062846 | None:intergenic |
| GGCCTTATTGAGAAATTGTT+TGG | 0.348733 | 3_3:+75061696 | Msa0472640:CDS |
| CTCTGCAATGAGGGGATATC+AGG | 0.349373 | 3_3:-75061898 | None:intergenic |
| CTCCAAACAATTTCTCAATA+AGG | 0.353127 | 3_3:-75061698 | None:intergenic |
| CTTGAGATTGCTTGGGAAAA+GGG | 0.361603 | 3_3:+75061925 | Msa0472640:CDS |
| GTGGCTTCTTCAGTGTATTC+CGG | 0.362191 | 3_3:-75062718 | None:intergenic |
| AACTCCATTCTGTTGATGAT+TGG | 0.367977 | 3_3:-75062408 | None:intergenic |
| TGATCCTGTGCTGCTCCAAC+AGG | 0.376439 | 3_3:+75060517 | Msa0472640:CDS |
| CAATTCTGAGGATGCTGGAT+GGG | 0.379701 | 3_3:+75061780 | Msa0472640:CDS |
| TGCCCCAGGAGCTGCTCAAT+TGG | 0.383496 | 3_3:+75061954 | Msa0472640:CDS |
| AAAGAATCCCAATCTGTTGT+AGG | 0.384082 | 3_3:+75062078 | Msa0472640:CDS |
| GAGGATGCTGGATGGGGTTG+TGG | 0.386116 | 3_3:+75061787 | Msa0472640:CDS |
| CAAAGTTGAAGCGGGTTTGA+TGG | 0.393516 | 3_3:+75061675 | Msa0472640:CDS |
| GCTTGAGATTGCTTGGGAAA+AGG | 0.396568 | 3_3:+75061924 | Msa0472640:CDS |
| TACGTTGATCCTGGAATTGC+TGG | 0.403330 | 3_3:+75062837 | Msa0472640:CDS |
| AACAAAACCTCTCTTGCTTC+CGG | 0.406451 | 3_3:-75061856 | None:intergenic |
| GAACAATCAGTCAGTGGCTC+GGG | 0.407768 | 3_3:+75061526 | Msa0472640:CDS |
| AAAACATGGATCCGGATTCA+TGG | 0.416705 | 3_3:+75060315 | None:intergenic |
| AGATAATGGGGAATGCAAAA+TGG | 0.422905 | 3_3:+75061603 | Msa0472640:CDS |
| GGTGAGACTAGTAGAGATAA+TGG | 0.423295 | 3_3:+75061589 | Msa0472640:CDS |
| GGCAGACAAATTACGTGAGC+AGG | 0.434535 | 3_3:-75062458 | None:intergenic |
| GTGAGACTAGTAGAGATAAT+GGG | 0.435686 | 3_3:+75061590 | Msa0472640:CDS |
| TGTTCCAATTGAGCAGCTCC+TGG | 0.440162 | 3_3:-75061958 | None:intergenic |
| CACTTGTTCCTACAACAGAT+TGG | 0.447381 | 3_3:-75062086 | None:intergenic |
| ACTTGTTCCTACAACAGATT+GGG | 0.448713 | 3_3:-75062085 | None:intergenic |
| CAGTTGTGTTACGTTGATCC+TGG | 0.449229 | 3_3:+75062828 | Msa0472640:intron |
| TTTCTGGAGATTGTAACAAT+TGG | 0.454219 | 3_3:+75061560 | Msa0472640:CDS |
| CATCCTCAGAATTGAGGCTC+TGG | 0.457496 | 3_3:-75061771 | None:intergenic |
| TTCCCTCTTCTCAGCTTCAA+TGG | 0.461872 | 3_3:+75060366 | Msa0472640:CDS |
| GGGAACTGGTAAATCACAAA+AGG | 0.466526 | 3_3:-75060348 | None:intergenic |
| CCTTTGTACTTTCAACATGA+TGG | 0.472319 | 3_3:+75062356 | Msa0472640:CDS |
| CTGGAAATGATCAATGTAAC+CGG | 0.474736 | 3_3:-75061752 | None:intergenic |
| CGTGAGCAGGGTCCAAAACT+AGG | 0.476174 | 3_3:-75062445 | None:intergenic |
| AGCCTCAATTCTGAGGATGC+TGG | 0.481179 | 3_3:+75061775 | Msa0472640:CDS |
| TGAACCTGTTGGAGCAGCAC+AGG | 0.482656 | 3_3:-75060521 | None:intergenic |
| GGACACGTGCTCCATGAATC+CGG | 0.486259 | 3_3:-75060326 | None:intergenic |
| AGAGATGGCTTGAGATTGCT+TGG | 0.487071 | 3_3:+75061917 | Msa0472640:CDS |
| ATGCTGGATGGGGTTGTGGA+TGG | 0.501534 | 3_3:+75061791 | Msa0472640:CDS |
| AATTCTGAGGATGCTGGATG+GGG | 0.505505 | 3_3:+75061781 | Msa0472640:CDS |
| AATTGCTGGCGAGGAGGAGA+TGG | 0.507256 | 3_3:+75062851 | Msa0472640:CDS |
| TCAAGCCATCTCTGCAATGA+GGG | 0.517092 | 3_3:-75061907 | None:intergenic |
| TGTCTGTAAACCAATTAAGC+AGG | 0.517724 | 3_3:-75061638 | None:intergenic |
| GTTCCAATTGAGCAGCTCCT+GGG | 0.517934 | 3_3:-75061957 | None:intergenic |
| TGAAGCTGAGAAGAGGGAAC+TGG | 0.518833 | 3_3:-75060362 | None:intergenic |
| CAAGAAAGAAAACATGGATC+CGG | 0.520196 | 3_3:+75060307 | None:intergenic |
| GGTCACTCGAGAACAATAGT+TGG | 0.526319 | 3_3:+75062377 | Msa0472640:CDS |
| ATATCCCCTCATTGCAGAGA+TGG | 0.533952 | 3_3:+75061902 | Msa0472640:CDS |
| GAGATTGTAACAATTGGCAC+GGG | 0.536486 | 3_3:+75061566 | Msa0472640:CDS |
| CAAGCCAATCATCAACAGAA+TGG | 0.540472 | 3_3:+75062404 | Msa0472640:CDS |
| AACTTCTACAAAGTTGAAGC+GGG | 0.540979 | 3_3:+75061667 | Msa0472640:CDS |
| CTCAAGCCATCTCTGCAATG+AGG | 0.542374 | 3_3:-75061908 | None:intergenic |
| TGAACAATCAGTCAGTGGCT+CGG | 0.544843 | 3_3:+75061525 | Msa0472640:CDS |
| GAAAAGGGCTTTGATGCCCC+AGG | 0.553672 | 3_3:+75061940 | Msa0472640:CDS |
| ATCCAGCATCCTCAGAATTG+AGG | 0.561074 | 3_3:-75061777 | None:intergenic |
| TGAGACTAGTAGAGATAATG+GGG | 0.563549 | 3_3:+75061591 | Msa0472640:CDS |
| ACTGAAGAAGCCACAATACC+AGG | 0.565663 | 3_3:+75062727 | Msa0472640:CDS |
| TCAATTCTGAGGATGCTGGA+TGG | 0.569675 | 3_3:+75061779 | Msa0472640:CDS |
| GGAGATTGTAACAATTGGCA+CGG | 0.570231 | 3_3:+75061565 | Msa0472640:CDS |
| AGAAGTAAGACCTGGTATTG+TGG | 0.570767 | 3_3:-75062737 | None:intergenic |
| TACCATTGAAGCTGAGAAGA+GGG | 0.572663 | 3_3:-75060368 | None:intergenic |
| ACAGAGACCGGAAGCAAGAG+AGG | 0.575871 | 3_3:+75061849 | Msa0472640:CDS |
| GGAACTGGTAAATCACAAAA+GGG | 0.580231 | 3_3:-75060347 | None:intergenic |
| TTTCCAGAGCCTCAATTCTG+AGG | 0.581276 | 3_3:+75061768 | Msa0472640:CDS |
| AGGATCATGAAAATGAGCAT+TGG | 0.590530 | 3_3:-75060501 | None:intergenic |
| TTCCAATTGAGCAGCTCCTG+GGG | 0.596703 | 3_3:-75061956 | None:intergenic |
| TCACTTACTAGCACAGAGAC+CGG | 0.600965 | 3_3:+75061837 | Msa0472640:CDS |
| CACTAAAGCAGAAAATTGGA+TGG | 0.601257 | 3_3:+75062675 | Msa0472640:CDS |
| CAACTTCTACAAAGTTGAAG+CGG | 0.601423 | 3_3:+75061666 | Msa0472640:CDS |
| GCAGACAAATTACGTGAGCA+GGG | 0.605295 | 3_3:-75062457 | None:intergenic |
| TCCTGGAATTGCTGGCGAGG+AGG | 0.610858 | 3_3:+75062845 | Msa0472640:CDS |
| GAGATGGCTTGAGATTGCTT+GGG | 0.611796 | 3_3:+75061918 | Msa0472640:CDS |
| AAGTTCTCATGAATTTCGTG+TGG | 0.614055 | 3_3:+75062181 | Msa0472640:CDS |
| TACGGATCAACAAAATGGAT+AGG | 0.621024 | 3_3:+75061988 | Msa0472640:CDS |
| TGATCCTGGAATTGCTGGCG+AGG | 0.622185 | 3_3:+75062842 | Msa0472640:CDS |
| CAAGCCATCTCTGCAATGAG+GGG | 0.632641 | 3_3:-75061906 | None:intergenic |
| AACAATCAGTCAGTGGCTCG+GGG | 0.634924 | 3_3:+75061527 | Msa0472640:CDS |
| GTACCATTGAAGCTGAGAAG+AGG | 0.635253 | 3_3:-75060369 | None:intergenic |
| CAGAGTGAACAATCAGTCAG+TGG | 0.650150 | 3_3:+75061520 | Msa0472640:intron |
| CCATCATGTTGAAAGTACAA+AGG | 0.685122 | 3_3:-75062356 | None:intergenic |
| GATTGTAACAATTGGCACGG+GGG | 0.724337 | 3_3:+75061568 | Msa0472640:CDS |
| AGATTGTAACAATTGGCACG+GGG | 0.729653 | 3_3:+75061567 | Msa0472640:CDS |
| AACAAGTGTTGATAACACCG+TGG | 0.773466 | 3_3:+75062101 | Msa0472640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAAAAATAAAAAGTA+TGG | - | chr3_3:75062630-75062649 | None:intergenic | 10.0% |
| !! | CAACTTGTATTTAAATATTA+CGG | - | chr3_3:75060870-75060889 | None:intergenic | 15.0% |
| !! | ATTGTTAAAGATAATCATAA+TGG | - | chr3_3:75061327-75061346 | None:intergenic | 15.0% |
| !! | AACTAAATATTAAAAGAGTA+AGG | - | chr3_3:75062482-75062501 | None:intergenic | 15.0% |
| !! | ATAACTTATACATAAACACT+TGG | + | chr3_3:75060726-75060745 | Msa0472640:intron | 20.0% |
| !! | TTATTATCACTGAAAACTTA+AGG | - | chr3_3:75060905-75060924 | None:intergenic | 20.0% |
| !! | CAGTAAATTTAAAAAAAGTG+AGG | + | chr3_3:75062152-75062171 | Msa0472640:CDS | 20.0% |
| !!! | TTAAATTTTGAAAGCTTTGT+CGG | + | chr3_3:75062328-75062347 | Msa0472640:intron | 20.0% |
| !! | AGTTTTCAGTGATAATAAGA+CGG | + | chr3_3:75060907-75060926 | Msa0472640:intron | 25.0% |
| ! | CAAAACAGTTTATCCAAATA+AGG | + | chr3_3:75061068-75061087 | Msa0472640:intron | 25.0% |
| ! | AAATTACTGAGTGATAGTTT+AGG | - | chr3_3:75061116-75061135 | None:intergenic | 25.0% |
| ! | TTCAAAATAGGAGAAAATGA+TGG | - | chr3_3:75061187-75061206 | None:intergenic | 25.0% |
| !!! | GCTATTTTCAGTTTCAAAAT+AGG | - | chr3_3:75061199-75061218 | None:intergenic | 25.0% |
| ! | ACTTATAATCTAACGGAAAA+GGG | - | chr3_3:75061405-75061424 | None:intergenic | 25.0% |
| ! | AACTTATAATCTAACGGAAA+AGG | - | chr3_3:75061406-75061425 | None:intergenic | 25.0% |
| ! | CATCAGAACTTATAATCTAA+CGG | - | chr3_3:75061412-75061431 | None:intergenic | 25.0% |
| ! | TTTATTTGCATATTCAGATG+AGG | + | chr3_3:75061451-75061470 | Msa0472640:intron | 25.0% |
| !!! | AATTCAAAAAGCATTTTGTC+CGG | + | chr3_3:75061733-75061752 | Msa0472640:CDS | 25.0% |
| !!! | ATCATTTCTTGTTTTATCCA+CGG | - | chr3_3:75062121-75062140 | None:intergenic | 25.0% |
| !! | ATCATATAATCTCCTAGTTT+TGG | + | chr3_3:75062433-75062452 | Msa0472640:CDS | 25.0% |
| ! | AATTGAAATTACAATGAGTG+CGG | - | chr3_3:75062521-75062540 | None:intergenic | 25.0% |
| ! | ATGGCAAAAACTCATAAAAA+AGG | + | chr3_3:75062694-75062713 | Msa0472640:CDS | 25.0% |
| ! | TGGCAAAAACTCATAAAAAA+GGG | + | chr3_3:75062695-75062714 | Msa0472640:CDS | 25.0% |
| ! | TGATAAATGAGTATGTTTGA+CGG | + | chr3_3:75062791-75062810 | Msa0472640:intron | 25.0% |
| AATTGAGGAAGAAGAAGAAA+GGG | - | chr3_3:75060418-75060437 | None:intergenic | 30.0% | |
| ATCTTTCTCCAATAACTGAT+TGG | + | chr3_3:75060543-75060562 | Msa0472640:intron | 30.0% | |
| AATCCAATCCAATCAGTTAT+TGG | - | chr3_3:75060554-75060573 | None:intergenic | 30.0% | |
| TAAGCTGAAAACAACTAATG+AGG | - | chr3_3:75060645-75060664 | None:intergenic | 30.0% | |
| AGTGATAATAAGACGGAAAA+TGG | + | chr3_3:75060914-75060933 | Msa0472640:intron | 30.0% | |
| TTAATTATAGTCAGAGACGT+AGG | + | chr3_3:75060950-75060969 | Msa0472640:intron | 30.0% | |
| GTTTATCCAAATAAGGCTTA+AGG | + | chr3_3:75061075-75061094 | Msa0472640:intron | 30.0% | |
| !! | TCAAAACCTTAAGCCTTATT+TGG | - | chr3_3:75061084-75061103 | None:intergenic | 30.0% |
| ! | TTTCTGGAGATTGTAACAAT+TGG | + | chr3_3:75061560-75061579 | Msa0472640:CDS | 30.0% |
| GAAAAAATCTCCTGCTTAAT+TGG | + | chr3_3:75061628-75061647 | Msa0472640:CDS | 30.0% | |
| CTCCAAACAATTTCTCAATA+AGG | - | chr3_3:75061701-75061720 | None:intergenic | 30.0% | |
| ! | CAATTGGAACATGTTGTTTA+CGG | + | chr3_3:75061970-75061989 | Msa0472640:CDS | 30.0% |
| TTGTTTACGGATCAACAAAA+TGG | + | chr3_3:75061983-75062002 | Msa0472640:CDS | 30.0% | |
| AAGAAACAAAATTGTCTGTG+TGG | - | chr3_3:75062303-75062322 | None:intergenic | 30.0% | |
| ACTTGAAATGATGCATAATC+AGG | - | chr3_3:75062606-75062625 | None:intergenic | 30.0% | |
| AGATCACTAAAGCAGAAAAT+TGG | + | chr3_3:75062671-75062690 | Msa0472640:CDS | 30.0% | |
| AAAAACTCATAAAAAAGGGC+CGG | + | chr3_3:75062699-75062718 | Msa0472640:CDS | 30.0% | |
| TTGTTAAAAGAAGTAAGACC+TGG | - | chr3_3:75062748-75062767 | None:intergenic | 30.0% | |
| GGAACTGGTAAATCACAAAA+GGG | - | chr3_3:75060350-75060369 | None:intergenic | 35.0% | |
| CAATTGAGGAAGAAGAAGAA+AGG | - | chr3_3:75060419-75060438 | None:intergenic | 35.0% | |
| ATCATCATCGATGTCAATTG+AGG | - | chr3_3:75060433-75060452 | None:intergenic | 35.0% | |
| TTCTACATACATGTACATGC+AGG | + | chr3_3:75060474-75060493 | Msa0472640:intron | 35.0% | |
| AGGATCATGAAAATGAGCAT+TGG | - | chr3_3:75060504-75060523 | None:intergenic | 35.0% | |
| TCTCCAATAACTGATTGGAT+TGG | + | chr3_3:75060548-75060567 | Msa0472640:intron | 35.0% | |
| AAACACGTGATTAAACGTGT+TGG | + | chr3_3:75060762-75060781 | Msa0472640:intron | 35.0% | |
| AACACGTGATTAAACGTGTT+GGG | + | chr3_3:75060763-75060782 | Msa0472640:intron | 35.0% | |
| ! | TCATGAGCATTGTTGTAAGT+TGG | + | chr3_3:75060843-75060862 | Msa0472640:intron | 35.0% |
| GTGAGACTAGTAGAGATAAT+GGG | + | chr3_3:75061590-75061609 | Msa0472640:CDS | 35.0% | |
| TGAGACTAGTAGAGATAATG+GGG | + | chr3_3:75061591-75061610 | Msa0472640:CDS | 35.0% | |
| !! | AGATAATGGGGAATGCAAAA+TGG | + | chr3_3:75061603-75061622 | Msa0472640:CDS | 35.0% |
| TGTCTGTAAACCAATTAAGC+AGG | - | chr3_3:75061641-75061660 | None:intergenic | 35.0% | |
| CAACTTCTACAAAGTTGAAG+CGG | + | chr3_3:75061666-75061685 | Msa0472640:CDS | 35.0% | |
| AACTTCTACAAAGTTGAAGC+GGG | + | chr3_3:75061667-75061686 | Msa0472640:CDS | 35.0% | |
| !! | GGCCTTATTGAGAAATTGTT+TGG | + | chr3_3:75061696-75061715 | Msa0472640:CDS | 35.0% |
| CTGGAAATGATCAATGTAAC+CGG | - | chr3_3:75061755-75061774 | None:intergenic | 35.0% | |
| TACGGATCAACAAAATGGAT+AGG | + | chr3_3:75061988-75062007 | Msa0472640:CDS | 35.0% | |
| ACAACAGATTGGGATTCTTT+AGG | - | chr3_3:75062078-75062097 | None:intergenic | 35.0% | |
| AAAGAATCCCAATCTGTTGT+AGG | + | chr3_3:75062078-75062097 | Msa0472640:CDS | 35.0% | |
| ACTTGTTCCTACAACAGATT+GGG | - | chr3_3:75062088-75062107 | None:intergenic | 35.0% | |
| AAGTTCTCATGAATTTCGTG+TGG | + | chr3_3:75062181-75062200 | Msa0472640:CDS | 35.0% | |
| GATGAAAACGCAATCCAATT+TGG | + | chr3_3:75062216-75062235 | Msa0472640:CDS | 35.0% | |
| ! | CCATCATGTTGAAAGTACAA+AGG | - | chr3_3:75062359-75062378 | None:intergenic | 35.0% |
| CCTTTGTACTTTCAACATGA+TGG | + | chr3_3:75062356-75062375 | Msa0472640:CDS | 35.0% | |
| !! | AACTCCATTCTGTTGATGAT+TGG | - | chr3_3:75062411-75062430 | None:intergenic | 35.0% |
| CACTAAAGCAGAAAATTGGA+TGG | + | chr3_3:75062675-75062694 | Msa0472640:CDS | 35.0% | |
| GGGAACTGGTAAATCACAAA+AGG | - | chr3_3:75060351-75060370 | None:intergenic | 40.0% | |
| TACCATTGAAGCTGAGAAGA+GGG | - | chr3_3:75060371-75060390 | None:intergenic | 40.0% | |
| TTGGAGAAAGATGAACCTGT+TGG | - | chr3_3:75060535-75060554 | None:intergenic | 40.0% | |
| GTGATTAAACGTGTTGGGTA+TGG | + | chr3_3:75060768-75060787 | Msa0472640:intron | 40.0% | |
| TTAACGCAACTCAGTACAGA+AGG | - | chr3_3:75061042-75061061 | None:intergenic | 40.0% | |
| GGAGATTGTAACAATTGGCA+CGG | + | chr3_3:75061565-75061584 | Msa0472640:CDS | 40.0% | |
| GAGATTGTAACAATTGGCAC+GGG | + | chr3_3:75061566-75061585 | Msa0472640:CDS | 40.0% | |
| AGATTGTAACAATTGGCACG+GGG | + | chr3_3:75061567-75061586 | Msa0472640:CDS | 40.0% | |
| GGTGAGACTAGTAGAGATAA+TGG | + | chr3_3:75061589-75061608 | Msa0472640:CDS | 40.0% | |
| AACAAAACCTCTCTTGCTTC+CGG | - | chr3_3:75061859-75061878 | None:intergenic | 40.0% | |
| !!! | GAAGCAAGAGAGGTTTTGTT+TGG | + | chr3_3:75061859-75061878 | Msa0472640:CDS | 40.0% |
| !!! | AGAGGTTTTGTTTGGTGGTT+CGG | + | chr3_3:75061867-75061886 | Msa0472640:CDS | 40.0% |
| CTTGAGATTGCTTGGGAAAA+GGG | + | chr3_3:75061925-75061944 | Msa0472640:CDS | 40.0% | |
| ! | TCTTGCGTTCTTTTGCTCTT+CGG | + | chr3_3:75062031-75062050 | Msa0472640:CDS | 40.0% |
| !! | CGGGCAAGAATAGTTGATTT+TGG | + | chr3_3:75062051-75062070 | Msa0472640:CDS | 40.0% |
| CACTTGTTCCTACAACAGAT+TGG | - | chr3_3:75062089-75062108 | None:intergenic | 40.0% | |
| !! | AACAAGTGTTGATAACACCG+TGG | + | chr3_3:75062101-75062120 | Msa0472640:CDS | 40.0% |
| TGATCAGTGAGAAAACGTGA+GGG | + | chr3_3:75062253-75062272 | Msa0472640:intron | 40.0% | |
| !! | TTTTGAAAGCTTTGTCGGAC+AGG | + | chr3_3:75062333-75062352 | Msa0472640:intron | 40.0% |
| CAAGCCAATCATCAACAGAA+TGG | + | chr3_3:75062404-75062423 | Msa0472640:CDS | 40.0% | |
| AGAAGTAAGACCTGGTATTG+TGG | - | chr3_3:75062740-75062759 | None:intergenic | 40.0% | |
| TTCCCTCTTCTCAGCTTCAA+TGG | + | chr3_3:75060366-75060385 | Msa0472640:CDS | 45.0% | |
| GTACCATTGAAGCTGAGAAG+AGG | - | chr3_3:75060372-75060391 | None:intergenic | 45.0% | |
| ACACAACCCTTCCCACTTAT+CGG | - | chr3_3:75060804-75060823 | None:intergenic | 45.0% | |
| TTGTGTGATGGCTCATAGGT+AGG | + | chr3_3:75060818-75060837 | Msa0472640:intron | 45.0% | |
| TGTGTGATGGCTCATAGGTA+GGG | + | chr3_3:75060819-75060838 | Msa0472640:intron | 45.0% | |
| AGAAGATGCAAGCGCAAGTT+GGG | - | chr3_3:75061360-75061379 | None:intergenic | 45.0% | |
| AAGAAGATGCAAGCGCAAGT+TGG | - | chr3_3:75061361-75061380 | None:intergenic | 45.0% | |
| CAGAGTGAACAATCAGTCAG+TGG | + | chr3_3:75061520-75061539 | Msa0472640:intron | 45.0% | |
| TGAACAATCAGTCAGTGGCT+CGG | + | chr3_3:75061525-75061544 | Msa0472640:CDS | 45.0% | |
| GATTGTAACAATTGGCACGG+GGG | + | chr3_3:75061568-75061587 | Msa0472640:CDS | 45.0% | |
| ! | CAAAGTTGAAGCGGGTTTGA+TGG | + | chr3_3:75061675-75061694 | Msa0472640:CDS | 45.0% |
| TTTCCAGAGCCTCAATTCTG+AGG | + | chr3_3:75061768-75061787 | Msa0472640:CDS | 45.0% | |
| ATCCAGCATCCTCAGAATTG+AGG | - | chr3_3:75061780-75061799 | None:intergenic | 45.0% | |
| ! | TCAATTCTGAGGATGCTGGA+TGG | + | chr3_3:75061779-75061798 | Msa0472640:CDS | 45.0% |
| ! | CAATTCTGAGGATGCTGGAT+GGG | + | chr3_3:75061780-75061799 | Msa0472640:CDS | 45.0% |
| ! | AATTCTGAGGATGCTGGATG+GGG | + | chr3_3:75061781-75061800 | Msa0472640:CDS | 45.0% |
| TCACTTACTAGCACAGAGAC+CGG | + | chr3_3:75061837-75061856 | Msa0472640:CDS | 45.0% | |
| !!! | GCAAGAGAGGTTTTGTTTGG+TGG | + | chr3_3:75061862-75061881 | Msa0472640:CDS | 45.0% |
| !!! | GAGGTTTTGTTTGGTGGTTC+GGG | + | chr3_3:75061868-75061887 | Msa0472640:CDS | 45.0% |
| ATATCCCCTCATTGCAGAGA+TGG | + | chr3_3:75061902-75061921 | Msa0472640:CDS | 45.0% | |
| TCAAGCCATCTCTGCAATGA+GGG | - | chr3_3:75061910-75061929 | None:intergenic | 45.0% | |
| AGAGATGGCTTGAGATTGCT+TGG | + | chr3_3:75061917-75061936 | Msa0472640:CDS | 45.0% | |
| GAGATGGCTTGAGATTGCTT+GGG | + | chr3_3:75061918-75061937 | Msa0472640:CDS | 45.0% | |
| GCTTGAGATTGCTTGGGAAA+AGG | + | chr3_3:75061924-75061943 | Msa0472640:CDS | 45.0% | |
| ! | CTTGCGTTCTTTTGCTCTTC+GGG | + | chr3_3:75062032-75062051 | Msa0472640:CDS | 45.0% |
| CAACATGCTGCTGACCAAAT+TGG | - | chr3_3:75062233-75062252 | None:intergenic | 45.0% | |
| GTGATCAGTGAGAAAACGTG+AGG | + | chr3_3:75062252-75062271 | Msa0472640:intron | 45.0% | |
| GGTCACTCGAGAACAATAGT+TGG | + | chr3_3:75062377-75062396 | Msa0472640:CDS | 45.0% | |
| GCAGACAAATTACGTGAGCA+GGG | - | chr3_3:75062460-75062479 | None:intergenic | 45.0% | |
| TTACAATGAGTGCGGAACTG+CGG | - | chr3_3:75062513-75062532 | None:intergenic | 45.0% | |
| GTGGCTTCTTCAGTGTATTC+CGG | - | chr3_3:75062721-75062740 | None:intergenic | 45.0% | |
| ACTGAAGAAGCCACAATACC+AGG | + | chr3_3:75062727-75062746 | Msa0472640:CDS | 45.0% | |
| CAGTTGTGTTACGTTGATCC+TGG | + | chr3_3:75062828-75062847 | Msa0472640:intron | 45.0% | |
| TACGTTGATCCTGGAATTGC+TGG | + | chr3_3:75062837-75062856 | Msa0472640:CDS | 45.0% | |
| TGAAGCTGAGAAGAGGGAAC+TGG | - | chr3_3:75060365-75060384 | None:intergenic | 50.0% | |
| !! | TAGGTGCCGATAAGTGGGAA+GGG | + | chr3_3:75060795-75060814 | Msa0472640:intron | 50.0% |
| AAGTGGGAAGGGTTGTGTGA+TGG | + | chr3_3:75060806-75060825 | Msa0472640:intron | 50.0% | |
| AGGGTTGTGTGATGGCTCAT+AGG | + | chr3_3:75060814-75060833 | Msa0472640:intron | 50.0% | |
| GAACAATCAGTCAGTGGCTC+GGG | + | chr3_3:75061526-75061545 | Msa0472640:CDS | 50.0% | |
| AACAATCAGTCAGTGGCTCG+GGG | + | chr3_3:75061527-75061546 | Msa0472640:CDS | 50.0% | |
| CATCCTCAGAATTGAGGCTC+TGG | - | chr3_3:75061774-75061793 | None:intergenic | 50.0% | |
| ! | AGCCTCAATTCTGAGGATGC+TGG | + | chr3_3:75061775-75061794 | Msa0472640:CDS | 50.0% |
| CTCTGCAATGAGGGGATATC+AGG | - | chr3_3:75061901-75061920 | None:intergenic | 50.0% | |
| CAAGCCATCTCTGCAATGAG+GGG | - | chr3_3:75061909-75061928 | None:intergenic | 50.0% | |
| CTCAAGCCATCTCTGCAATG+AGG | - | chr3_3:75061911-75061930 | None:intergenic | 50.0% | |
| TTCCAATTGAGCAGCTCCTG+GGG | - | chr3_3:75061959-75061978 | None:intergenic | 50.0% | |
| GTTCCAATTGAGCAGCTCCT+GGG | - | chr3_3:75061960-75061979 | None:intergenic | 50.0% | |
| TGTTCCAATTGAGCAGCTCC+TGG | - | chr3_3:75061961-75061980 | None:intergenic | 50.0% | |
| GGCAGACAAATTACGTGAGC+AGG | - | chr3_3:75062461-75062480 | None:intergenic | 50.0% | |
| CAAGCGTGTGAAACAGACAC+TGG | - | chr3_3:75062567-75062586 | None:intergenic | 50.0% | |
| GGACACGTGCTCCATGAATC+CGG | - | chr3_3:75060329-75060348 | None:intergenic | 55.0% | |
| ! | TGATCCTGTGCTGCTCCAAC+AGG | + | chr3_3:75060517-75060536 | Msa0472640:CDS | 55.0% |
| TGAACCTGTTGGAGCAGCAC+AGG | - | chr3_3:75060524-75060543 | None:intergenic | 55.0% | |
| ACGTGTTGGGTATGGCTCGT+AGG | + | chr3_3:75060776-75060795 | Msa0472640:intron | 55.0% | |
| !! | GCTCGTAGGTGCCGATAAGT+GGG | + | chr3_3:75060790-75060809 | Msa0472640:intron | 55.0% |
| !! | GTAGGTGCCGATAAGTGGGA+AGG | + | chr3_3:75060794-75060813 | Msa0472640:intron | 55.0% |
| TCGGGGCTTGAAGCAGTTTC+TGG | + | chr3_3:75061544-75061563 | Msa0472640:CDS | 55.0% | |
| ATGCTGGATGGGGTTGTGGA+TGG | + | chr3_3:75061791-75061810 | Msa0472640:CDS | 55.0% | |
| ACAGAGACCGGAAGCAAGAG+AGG | + | chr3_3:75061849-75061868 | Msa0472640:CDS | 55.0% | |
| ! | GAAAAGGGCTTTGATGCCCC+AGG | + | chr3_3:75061940-75061959 | Msa0472640:CDS | 55.0% |
| CGTGAGCAGGGTCCAAAACT+AGG | - | chr3_3:75062448-75062467 | None:intergenic | 55.0% | |
| TGATCCTGGAATTGCTGGCG+AGG | + | chr3_3:75062842-75062861 | Msa0472640:CDS | 55.0% | |
| AATTGCTGGCGAGGAGGAGA+TGG | + | chr3_3:75062851-75062870 | Msa0472640:CDS | 55.0% | |
| !! | GGCTCGTAGGTGCCGATAAG+TGG | + | chr3_3:75060789-75060808 | Msa0472640:intron | 60.0% |
| GAGGATGCTGGATGGGGTTG+TGG | + | chr3_3:75061787-75061806 | Msa0472640:CDS | 60.0% | |
| TGCCCCAGGAGCTGCTCAAT+TGG | + | chr3_3:75061954-75061973 | Msa0472640:CDS | 60.0% | |
| TCCTGGAATTGCTGGCGAGG+AGG | + | chr3_3:75062845-75062864 | Msa0472640:CDS | 60.0% | |
| TCCTCCTCGCCAGCAATTCC+AGG | - | chr3_3:75062849-75062868 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 75060320 | 75062914 | 75060320 | ID=Msa0472640;Name=Msa0472640 |
| chr3_3 | mRNA | 75060320 | 75062914 | 75060320 | ID=Msa0472640-mRNA-1;Parent=Msa0472640;Name=Msa0472640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|6|0|382 |
| chr3_3 | exon | 75060320 | 75060387 | 75060320 | ID=Msa0472640-mRNA-1:exon:19298;Parent=Msa0472640-mRNA-1 |
| chr3_3 | exon | 75060496 | 75060538 | 75060496 | ID=Msa0472640-mRNA-1:exon:19299;Parent=Msa0472640-mRNA-1 |
| chr3_3 | exon | 75061523 | 75062268 | 75061523 | ID=Msa0472640-mRNA-1:exon:19300;Parent=Msa0472640-mRNA-1 |
| chr3_3 | exon | 75062355 | 75062466 | 75062355 | ID=Msa0472640-mRNA-1:exon:19301;Parent=Msa0472640-mRNA-1 |
| chr3_3 | exon | 75062653 | 75062748 | 75062653 | ID=Msa0472640-mRNA-1:exon:19302;Parent=Msa0472640-mRNA-1 |
| chr3_3 | exon | 75062831 | 75062914 | 75062831 | ID=Msa0472640-mRNA-1:exon:19303;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75060320 | 75060387 | 75060320 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75060496 | 75060538 | 75060496 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75061523 | 75062268 | 75061523 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75062355 | 75062466 | 75062355 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75062653 | 75062748 | 75062653 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| chr3_3 | CDS | 75062831 | 75062914 | 75062831 | ID=Msa0472640-mRNA-1:cds;Parent=Msa0472640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
