AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1408580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408580 MtrunA17_Chr8g0378061 98.563 487 7 0 1 487 1 487 0.0 996
Msa1408580 MtrunA17_Chr2g0330841 73.037 382 96 2 64 444 29 404 0.0 558
Msa1408580 MtrunA17_Chr6g0467041 85.616 292 42 0 1 292 1 292 0.0 516
Msa1408580 MtrunA17_Chr6g0467041 75.556 45 11 0 412 456 284 328 1.01e-14 75.1
Msa1408580 MtrunA17_Chr2g0330821 68.792 298 73 3 1 297 60 338 2.98e-137 399
Msa1408580 MtrunA17_Chr5g0410881 50.935 214 91 4 19 218 29 242 7.94e-65 218
Msa1408580 MtrunA17_Chr8g0379701 51.905 210 90 4 13 217 4 207 2.92e-63 211
Msa1408580 MtrunA17_Chr4g0039891 46.860 207 98 3 22 216 12 218 5.72e-56 194
Msa1408580 MtrunA17_Chr1g0204741 46.117 206 99 5 19 215 37 239 3.15e-51 177
Msa1408580 MtrunA17_Chr7g0260331 46.411 209 102 4 19 217 46 254 3.59e-51 177
Msa1408580 MtrunA17_Chr6g0470901 80.000 105 17 1 220 324 49 149 5.51e-49 165
Msa1408580 MtrunA17_Chr3g0135831 44.390 205 104 5 19 216 43 244 8.14e-49 172
Msa1408580 MtrunA17_Chr4g0071051 46.774 186 95 2 19 203 98 280 9.30e-49 173
Msa1408580 MtrunA17_Chr1g0185131 44.633 177 90 2 20 195 30 199 1.13e-46 165
Msa1408580 MtrunA17_Chr8g0392001 48.969 194 86 6 21 201 21 214 2.52e-44 159
Msa1408580 MtrunA17_Chr3g0134031 72.340 94 26 0 20 113 22 115 1.59e-43 157
Msa1408580 MtrunA17_Chr2g0284481 62.037 108 41 0 12 119 5 112 3.14e-42 154
Msa1408580 MtrunA17_Chr5g0397881 61.111 108 42 0 6 113 8 115 5.46e-42 153
Msa1408580 MtrunA17_Chr5g0402291 61.538 104 40 0 19 122 6 109 2.52e-41 149
Msa1408580 MtrunA17_Chr5g0441531 69.149 94 29 0 20 113 23 116 4.10e-41 147
Msa1408580 MtrunA17_Chr6g0485571 39.286 224 103 4 21 230 10 214 9.66e-41 149
Msa1408580 MtrunA17_Chr6g0472421 63.830 94 34 0 20 113 31 124 4.33e-38 142
Msa1408580 MtrunA17_Chr1g0203601 60.417 96 38 0 20 115 16 111 2.76e-37 139
Msa1408580 MtrunA17_Chr7g0257331 51.327 113 55 0 1 113 1 113 5.09e-36 133
Msa1408580 MtrunA17_Chr4g0047421 57.143 98 38 1 20 113 31 128 2.45e-33 125
Msa1408580 MtrunA17_Chr8g0375041 58.065 93 39 0 21 113 8 100 4.46e-32 123
Msa1408580 MtrunA17_Chr1g0179321 65.000 60 21 0 22 81 49 108 1.38e-23 95.5
Msa1408580 MtrunA17_Chr4g0023771 67.213 61 19 1 22 81 15 75 4.91e-21 88.2
Msa1408580 MtrunA17_Chr1g0179311 27.239 268 176 9 61 323 1 254 1.98e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1408580 AT4G13980.1 51.107 497 202 10 1 487 1 466 5.90e-145 424
Msa1408580 AT1G32330.1 47.660 235 104 5 1 216 16 250 7.73e-61 207
Msa1408580 AT1G32330.2 47.660 235 104 5 1 216 16 250 8.54e-61 207
Msa1408580 AT4G17750.1 46.352 233 104 4 5 216 35 267 5.29e-60 205
Msa1408580 AT5G16820.1 50.000 210 90 5 22 217 27 235 2.71e-58 200
Msa1408580 AT5G16820.2 50.000 210 90 5 22 217 27 235 2.71e-58 200
Msa1408580 AT3G02990.1 46.119 219 105 4 22 228 23 240 1.99e-57 197
Msa1408580 AT4G18880.1 51.643 213 93 3 14 220 7 215 1.65e-55 191
Msa1408580 AT3G22830.1 43.662 213 106 4 19 217 58 270 3.46e-50 176
Msa1408580 AT2G26150.1 43.243 222 118 4 19 232 41 262 6.76e-50 174
Msa1408580 AT2G26150.4 43.243 222 118 4 19 232 41 262 6.76e-50 174
Msa1408580 AT5G45710.3 46.296 216 101 4 14 224 6 211 1.78e-49 173
Msa1408580 AT5G45710.1 46.296 216 101 4 14 224 6 211 1.78e-49 173
Msa1408580 AT3G51910.1 43.478 207 101 4 14 215 21 216 9.89e-48 166
Msa1408580 AT5G43840.1 45.745 188 90 3 20 205 17 194 1.01e-45 161
Msa1408580 AT5G03720.2 45.556 180 95 2 22 198 55 234 5.05e-45 163
Msa1408580 AT5G03720.1 45.556 180 95 2 22 198 55 234 5.05e-45 163
Msa1408580 AT1G46264.1 60.504 119 37 1 14 122 26 144 5.80e-44 158
Msa1408580 AT1G67970.1 45.550 191 91 5 21 201 18 205 1.70e-43 158
Msa1408580 AT3G24520.1 44.809 183 78 4 21 202 16 176 6.73e-43 155
Msa1408580 AT3G63350.1 37.447 235 132 3 5 227 3 234 1.57e-42 152
Msa1408580 AT5G54070.1 42.029 207 109 3 18 218 67 268 2.21e-42 154
Msa1408580 AT5G62020.1 52.101 119 56 1 1 118 1 119 5.98e-38 140
Msa1408580 AT4G11660.1 62.766 94 35 0 20 113 57 150 2.88e-37 141
Msa1408580 AT4G36990.1 60.417 96 38 0 20 115 12 107 5.42e-37 138
Msa1408580 AT2G41690.1 53.846 117 54 0 20 136 38 154 1.11e-36 135
Msa1408580 AT4G18870.1 47.368 95 49 1 15 109 6 99 3.88e-21 94.0
Msa1408580 AT4G18870.1 45.455 88 48 0 22 109 146 233 6.15e-21 93.6
Msa1408580 AT1G77570.1 42.222 90 49 2 23 109 27 116 7.40e-18 80.9
Msa1408580 AT2G26150.3 35.664 143 84 4 82 216 49 191 1.71e-16 80.5
Msa1408580 AT2G26150.2 35.664 143 84 4 82 216 49 191 1.71e-16 80.5

Find 143 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTCCAATGCTGCCCTTTC+TGG -0.033953 tig0023390:+82197 None:intergenic
CAATTTCCTGACAGTTTATT+TGG 0.134687 tig0023390:+81457 None:intergenic
ATCCATGTTCTTGATGTTAA+TGG 0.154738 tig0023390:+81152 None:intergenic
TCTGCAAGGTCTAGTGTTTC+AGG 0.179480 tig0023390:+81672 None:intergenic
AGCAATTTCAGACTGGAATT+TGG 0.185327 tig0023390:-81876 Msa1408580:CDS
CCTTCTTCTTGCTCACTATT+TGG 0.197563 tig0023390:+81195 None:intergenic
CTTCTTTGAGAAGGCTCTTC+AGG 0.211830 tig0023390:-82030 Msa1408580:CDS
CAAATAAACTGTCAGGAAAT+TGG 0.249049 tig0023390:-81456 Msa1408580:CDS
GGCTCCAGAGAATGAAGATT+TGG 0.274713 tig0023390:+81582 None:intergenic
ACACTAGACCTTGCAGATAC+TGG 0.281618 tig0023390:-81666 Msa1408580:CDS
CTGTCAGGAAATTGGCAATT+TGG 0.285988 tig0023390:-81448 Msa1408580:CDS
GAAATTGTTGTGCTTGAAAT+AGG 0.289577 tig0023390:+84066 None:intergenic
CCCTTTGAGCATGCTGTCTT+GGG 0.294399 tig0023390:-81122 Msa1408580:exon
AATTTCCTGACAGTTTATTT+GGG 0.297215 tig0023390:+81458 None:intergenic
ATAACAAAAGCTTCATTGTT+TGG 0.304742 tig0023390:-84123 Msa1408580:CDS
CTCTTTCTTCTTGCTTAGGC+TGG 0.312182 tig0023390:+84333 None:intergenic
ACGGGGTGAATGATGTGTTT+TGG 0.315138 tig0023390:-81287 Msa1408580:CDS
CCACAGATGAGATCGTTTCT+TGG 0.319260 tig0023390:-84153 Msa1408580:CDS
ACCCTTTGAGCATGCTGTCT+TGG 0.321674 tig0023390:-81123 Msa1408580:exon
GCAATTTCAGACTGGAATTT+GGG 0.327997 tig0023390:-81875 Msa1408580:CDS
GATGGTAAAGAATCTGAAAT+TGG 0.330710 tig0023390:-81405 Msa1408580:CDS
CTTGTACATTGGAATTCAAT+AGG 0.346549 tig0023390:-81503 Msa1408580:CDS
AGAAGAACACGGGAGAATTC+AGG 0.363985 tig0023390:+84094 None:intergenic
CAAAATCGAATCCATGGATT+TGG 0.364324 tig0023390:-81979 Msa1408580:CDS
AACTCTGGCATCTTGTACAT+TGG 0.365517 tig0023390:-81514 Msa1408580:CDS
CTATCACCTTCTTCAGTACT+TGG 0.371141 tig0023390:+81561 None:intergenic
GAAGAAGGGCGGTCAGTTCA+TGG 0.385884 tig0023390:-81180 Msa1408580:CDS
ATTAGCCACATTTCGGTTTG+TGG 0.388053 tig0023390:+81377 None:intergenic
TTGCTTAGGCTGGTCTTTGT+TGG 0.389231 tig0023390:+84343 None:intergenic
GAAGCTCTTTCTTCTTGCTT+AGG 0.390484 tig0023390:+84329 None:intergenic
TCAGATATGAACTTGATATC+AGG 0.394555 tig0023390:-81795 Msa1408580:CDS
ATTTGGAATTGCTCGATAGT+TGG 0.404937 tig0023390:+81212 None:intergenic
TAGCCTCATTAGCCACATTT+CGG 0.405235 tig0023390:+81370 None:intergenic
TCAAAGCTGCTGCTCGGCAC+GGG 0.408584 tig0023390:-81305 Msa1408580:CDS
ACAGGAATGCAGACAAGAAC+TGG 0.408767 tig0023390:-81708 Msa1408580:CDS
GCTCCAGAGAATGAAGATTT+GGG 0.410466 tig0023390:+81583 None:intergenic
CACTAGACCTTGCAGATACT+GGG 0.411215 tig0023390:-81665 Msa1408580:CDS
GCCGCTGCCGCCGGAGGAAG+CGG 0.414745 tig0023390:-84229 Msa1408580:CDS
CGGAGGAAGCGGAGGAGGTC+CGG 0.415280 tig0023390:-84218 Msa1408580:CDS
ACCAAGCTACCTTCGGCAAC+AGG 0.417714 tig0023390:+81909 None:intergenic
CATTCAAAACTTGAATATAT+AGG 0.419766 tig0023390:+80886 None:intergenic
CAGAGTTAAATTTAGTTGGC+AGG 0.423956 tig0023390:+81530 None:intergenic
TGTCTTGGGACACTTACTAT+TGG 0.424179 tig0023390:-81108 Msa1408580:three_prime_UTR
AGCTTAAGAGCTTGGATTGA+AGG 0.426622 tig0023390:+82141 None:intergenic
GTGCCCAAATCTTCATTCTC+TGG 0.429020 tig0023390:-81586 Msa1408580:CDS
ACGTTACCTGAAGCCTCCTT+TGG 0.431681 tig0023390:+81333 None:intergenic
ATGCCAGAGTTAAATTTAGT+TGG 0.435087 tig0023390:+81526 None:intergenic
TCCGCTTCCTCCGGCGGCAG+CGG 0.440478 tig0023390:+84228 None:intergenic
ATAACTGTAGCTTAAGAGCT+TGG 0.443695 tig0023390:+82133 None:intergenic
GCCGAGCAGCAGCTTTGACT+TGG 0.452625 tig0023390:+81310 None:intergenic
TAAGAAAAGGCGATTGCCTC+AGG 0.456333 tig0023390:-81946 Msa1408580:CDS
TGGCAGCTTATAATAAGAAA+AGG 0.461564 tig0023390:-81959 Msa1408580:CDS
TTACCTGAAGCCTCCTTTGG+TGG 0.465202 tig0023390:+81336 None:intergenic
GCTCCACCAAAGGAGGCTTC+AGG 0.466668 tig0023390:-81339 Msa1408580:CDS
GCCGCCGGAGGAAGCGGAGG+AGG 0.467841 tig0023390:-84223 Msa1408580:CDS
AAAAGCAGATCCTGAGCGTT+GGG 0.472666 tig0023390:-82327 Msa1408580:CDS
TGCATTGCGAATTAGTTGTC+TGG 0.473142 tig0023390:-80992 Msa1408580:three_prime_UTR
CCCAAGACAGCATGCTCAAA+GGG 0.473933 tig0023390:+81122 None:intergenic
TCCTCATCAGCCGCTGCCGC+CGG 0.477669 tig0023390:-84238 Msa1408580:CDS
TTCCCGCAAAATCGAATCCA+TGG 0.478636 tig0023390:-81985 Msa1408580:CDS
TCACAGTCATAGTCATCCTC+CGG 0.482739 tig0023390:-82234 Msa1408580:CDS
CCAAATAGTGAGCAAGAAGA+AGG 0.485282 tig0023390:-81195 Msa1408580:CDS
GGATGACTATGACTGTGAAT+AGG 0.487235 tig0023390:+82239 None:intergenic
GTCGCCCCAAATAAACTGTC+AGG 0.490553 tig0023390:-81463 Msa1408580:CDS
AATTCCAGTCTGAAATTGCT+AGG 0.494876 tig0023390:+81879 None:intergenic
AGATCCAGAAAGGGCAGCAT+TGG 0.494908 tig0023390:-82201 Msa1408580:CDS
TGTTGTGCTTGAAATAGGTT+GGG 0.496826 tig0023390:+84071 None:intergenic
ACAGTTTATTTGGGGCGACC+TGG 0.496979 tig0023390:+81467 None:intergenic
TGAGACAGAAAAGCTTCAGC+TGG 0.500611 tig0023390:-82108 Msa1408580:CDS
CTGCCAACTAAATTTAACTC+TGG 0.500806 tig0023390:-81529 Msa1408580:CDS
AAACCGAAATGTGGCTAATG+AGG 0.502956 tig0023390:-81373 Msa1408580:CDS
ATTGAGCTGACGGATGAAGC+TGG 0.506271 tig0023390:+84042 None:intergenic
TCTTTGTTGGCGTTTGCTGT+TGG 0.508266 tig0023390:+84356 None:intergenic
GTCAAAGCTGCTGCTCGGCA+CGG 0.509514 tig0023390:-81306 Msa1408580:CDS
TTTGCAGAACTTCTTTGAGA+AGG 0.509914 tig0023390:-82039 Msa1408580:CDS
GCCTGTTGCCGAAGGTAGCT+TGG 0.510527 tig0023390:-81910 Msa1408580:CDS
TCCGGCGGCAGCGGCTGATG+AGG 0.511352 tig0023390:+84237 None:intergenic
CACTTTCAAGTCTACAATAC+CGG 0.512885 tig0023390:+80933 None:intergenic
TTGTTGTGCTTGAAATAGGT+TGG 0.514168 tig0023390:+84070 None:intergenic
CTGCAAGGTCTAGTGTTTCA+GGG 0.517628 tig0023390:+81673 None:intergenic
ATAGGAATTCATACTCGGCC+AGG 0.518045 tig0023390:-81485 Msa1408580:CDS
TCTTCATTGTCTGAACAGCC+TGG 0.518791 tig0023390:+81243 None:intergenic
TTGGCAAACTCCCAACGCTC+AGG 0.519786 tig0023390:+82317 None:intergenic
AACAGCCTGGTCTTTCAGTA+AGG 0.527046 tig0023390:+81256 None:intergenic
AGTTTATTTGAGATATCTTG+AGG 0.532987 tig0023390:+81843 None:intergenic
GCTTAAGAGCTTGGATTGAA+GGG 0.534276 tig0023390:+82142 None:intergenic
ATTATAAGCTGCCAAATCCA+TGG 0.537709 tig0023390:+81968 None:intergenic
GTTTATTTGAGATATCTTGA+GGG 0.542382 tig0023390:+81844 None:intergenic
TCATACGTCTTCTGAAGAAA+CGG 0.543831 tig0023390:+84193 None:intergenic
CTCCATTAACATCAAGAACA+TGG 0.545248 tig0023390:-81154 Msa1408580:CDS
GAAAAGCAGATCCTGAGCGT+TGG 0.545857 tig0023390:-82328 Msa1408580:CDS
CTGTCTGAAGGAGAACTGAC+AGG 0.546477 tig0023390:-81726 Msa1408580:CDS
CAATCCTAGCAATTTCAGAC+TGG 0.548773 tig0023390:-81883 Msa1408580:CDS
TCAGCGGCGATTGGATGGCA+TGG 0.549084 tig0023390:-82078 Msa1408580:CDS
ATTGTCAACCAAGCTACCTT+CGG 0.550180 tig0023390:+81902 None:intergenic
CAAAGCTGCTGCTCGGCACG+GGG 0.552279 tig0023390:-81304 Msa1408580:CDS
CACAGTCATAGTCATCCTCC+GGG 0.559092 tig0023390:-82233 Msa1408580:CDS
CGGACCTCCTCCGCTTCCTC+CGG 0.560425 tig0023390:+84219 None:intergenic
TCCCAAGACAGCATGCTCAA+AGG 0.561043 tig0023390:+81121 None:intergenic
GAGTCAAGAGTTAACGCTGA+TGG 0.561131 tig0023390:-81423 Msa1408580:CDS
TTCTGCTGTAGATCCAGAAA+GGG 0.565003 tig0023390:-82210 Msa1408580:CDS
CTGGAGCCAAGTACTGAAGA+AGG 0.565718 tig0023390:-81567 Msa1408580:CDS
TTCTGAAGAATATACACCGC+AGG 0.566868 tig0023390:-82265 Msa1408580:CDS
GTTCTGCTGTAGATCCAGAA+AGG 0.569845 tig0023390:-82211 Msa1408580:CDS
GCTGCCGCCGGAGGAAGCGG+AGG 0.569858 tig0023390:-84226 Msa1408580:CDS
TCATCAGCCGCTGCCGCCGG+AGG 0.573945 tig0023390:-84235 Msa1408580:CDS
AAGTTCATATCTGAGACAGC+TGG 0.576214 tig0023390:+81804 None:intergenic
ACCTCCTCCGCTTCCTCCGG+CGG 0.590329 tig0023390:+84222 None:intergenic
GATTGGATGGCATGGAGAAG+AGG 0.590608 tig0023390:-82070 Msa1408580:CDS
CAATCTAGCTCCACCAAAGG+AGG 0.593167 tig0023390:-81346 Msa1408580:CDS
CACGTGCAGCCTGTTGCCGA+AGG 0.594030 tig0023390:-81918 Msa1408580:CDS
GCAGCGGCTGATGAGGATTG+TGG 0.595315 tig0023390:+84244 None:intergenic
GTCTTCTGAAGAAACGGTGC+CGG 0.596431 tig0023390:+84199 None:intergenic
TTACATAGGTATTGAGCTGA+CGG 0.598207 tig0023390:+84032 None:intergenic
TCCAAGTCAAAGCTGCTGCT+CGG 0.603523 tig0023390:-81311 Msa1408580:CDS
GTGCAGAATTCATTTCGTAA+CGG 0.603673 tig0023390:+84266 None:intergenic
CAAATAGTGAGCAAGAAGAA+GGG 0.604496 tig0023390:-81194 Msa1408580:CDS
ATTTCCTGACAGTTTATTTG+GGG 0.606554 tig0023390:+81459 None:intergenic
AATAGGTTGGGAGAAGAACA+CGG 0.613461 tig0023390:+84083 None:intergenic
TCTGGATCTACAGCAGAACC+CGG 0.614712 tig0023390:+82215 None:intergenic
AGAAACGATCTCATCTGTGG+TGG 0.614963 tig0023390:+84156 None:intergenic
AGTTTCCACAAACCGAAATG+TGG 0.624523 tig0023390:-81382 Msa1408580:CDS
GTGTTTCAGGGGTAAAAGCA+AGG 0.625370 tig0023390:+81685 None:intergenic
CCAAGAAACGATCTCATCTG+TGG 0.633047 tig0023390:+84153 None:intergenic
TTGATATCAGGTAGCACACA+GGG 0.633161 tig0023390:-81783 Msa1408580:CDS
ACAGGGTTCAAACGAAGATG+AGG 0.634687 tig0023390:-81766 Msa1408580:CDS
TGCAAGGTCTAGTGTTTCAG+GGG 0.637403 tig0023390:+81674 None:intergenic
ATTCAATAGGAATTCATACT+CGG 0.642142 tig0023390:-81490 Msa1408580:CDS
GACTGTGAATAGGTTTCCTG+CGG 0.644543 tig0023390:+82249 None:intergenic
AGAACACGGGAGAATTCAGG+AGG 0.649555 tig0023390:+84097 None:intergenic
ATAGGTTGGGAGAAGAACAC+GGG 0.651753 tig0023390:+84084 None:intergenic
AATTTCCTTACTGAAAGACC+AGG 0.654469 tig0023390:-81261 Msa1408580:CDS
AAGATGCCCCAGTATCTGCA+AGG 0.666464 tig0023390:+81658 None:intergenic
AGGCTGTTCAGACAATGAAG+AGG 0.672815 tig0023390:-81241 Msa1408580:CDS
TATCAATCTAGCTCCACCAA+AGG 0.674289 tig0023390:-81349 Msa1408580:CDS
TCTTCAGAAGACGTATGACA+TGG 0.676071 tig0023390:-84188 Msa1408580:CDS
CTTGATATCAGGTAGCACAC+AGG 0.676389 tig0023390:-81784 Msa1408580:CDS
GGCTGCACGTGATCAACCTG+AGG 0.691898 tig0023390:+81930 None:intergenic
TCAGAAGACGTATGACATGG+TGG 0.698200 tig0023390:-84185 Msa1408580:CDS
ACTAGACCTTGCAGATACTG+GGG 0.701020 tig0023390:-81664 Msa1408580:CDS
ATAGTGAGCAAGAAGAAGGG+CGG 0.709670 tig0023390:-81191 Msa1408580:CDS
GGATCTACAGCAGAACCCGG+AGG 0.744225 tig0023390:+82218 None:intergenic
GAACACGGGAGAATTCAGGA+GGG 0.754078 tig0023390:+84098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATAAAAATTTACAATAT+AGG + tig0023390:82581-82600 None:intergenic 10.0%
!!! ATATTTTTGTAAAGATTTAA+TGG - tig0023390:82730-82749 Msa1408580:intron 10.0%
!!! ATTTATGTTTTAATTTGTTA+TGG - tig0023390:82812-82831 Msa1408580:intron 10.0%
!! ATTATGAACAAATTTAGATT+TGG - tig0023390:81386-81405 Msa1408580:CDS 15.0%
!! ATATCATATTTATATAGTTC+AGG + tig0023390:81844-81863 None:intergenic 15.0%
!! ATAAATATGATATGATGATA+TGG - tig0023390:81851-81870 Msa1408580:CDS 15.0%
!!! ATCTTTTATAAATTCTTCAT+TGG + tig0023390:82900-82919 None:intergenic 15.0%
!!! ATTGACACATTTTTGTTTTT+CGG + tig0023390:81910-81929 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAGTATA+TGG - tig0023390:81927-81946 Msa1408580:CDS 20.0%
!!! AGCTAACTTTTTTTTTTTCA+TGG + tig0023390:82326-82345 None:intergenic 20.0%
!! ATGTGAAAGATTTGAAAATA+AGG + tig0023390:82379-82398 None:intergenic 20.0%
!!! TTATTTTCAAATCTTTCACA+TGG - tig0023390:82378-82397 Msa1408580:intron 20.0%
!! ATGGGAAAATTTAACATTTA+GGG + tig0023390:82427-82446 None:intergenic 20.0%
!! AATGGGAAAATTTAACATTT+AGG + tig0023390:82428-82447 None:intergenic 20.0%
!! GGATTAAACAATAAAAATCT+GGG + tig0023390:82466-82485 None:intergenic 20.0%
!! AGGATTAAACAATAAAAATC+TGG + tig0023390:82467-82486 None:intergenic 20.0%
!!! ATTTATATGTGCTTTTTATC+AGG - tig0023390:82838-82857 Msa1408580:intron 20.0%
!!! TTTATATGTGCTTTTTATCA+GGG - tig0023390:82839-82858 Msa1408580:intron 20.0%
!! CATTCAAAACTTGAATATAT+AGG + tig0023390:84312-84331 None:intergenic 20.0%
!!! CTATATATTCAAGTTTTGAA+TGG - tig0023390:84310-84329 Msa1408580:five_prime_UTR 20.0%
! ATAACAAAAGCTTCATTGTT+TGG - tig0023390:81072-81091 Msa1408580:three_prime_UTR 25.0%
! AAAAATCTGCTTAGTAAGAT+AGG - tig0023390:81362-81381 Msa1408580:CDS 25.0%
! ATATTCAGAGACTAAATTGA+TGG + tig0023390:81800-81819 None:intergenic 25.0%
!!! TTGACACATTTTTGTTTTTC+GGG + tig0023390:81909-81928 None:intergenic 25.0%
!! TTATCATGTTTCTATAGTGT+AGG - tig0023390:82032-82051 Msa1408580:CDS 25.0%
!! TATCATGTTTCTATAGTGTA+GGG - tig0023390:82033-82052 Msa1408580:CDS 25.0%
! TGGGCAATTATTGAATTTAA+AGG - tig0023390:82238-82257 Msa1408580:CDS 25.0%
! TTGATATCTAACTCTTAGAT+AGG - tig0023390:82612-82631 Msa1408580:intron 25.0%
! AAATAGAAATCATGCACTTA+TGG - tig0023390:82641-82660 Msa1408580:intron 25.0%
! ATGGCAATGATTAAAAACTA+AGG - tig0023390:82660-82679 Msa1408580:intron 25.0%
! ATTACACACATAAAAACTTC+AGG + tig0023390:82705-82724 None:intergenic 25.0%
!! GTTTATTTGAGATATCTTGA+GGG + tig0023390:83354-83373 None:intergenic 25.0%
!! AGTTTATTTGAGATATCTTG+AGG + tig0023390:83355-83374 None:intergenic 25.0%
! ATTCAATAGGAATTCATACT+CGG - tig0023390:83705-83724 Msa1408580:intron 25.0%
! AATTTCCTGACAGTTTATTT+GGG + tig0023390:83740-83759 None:intergenic 25.0%
GAAATTGTTGTGCTTGAAAT+AGG + tig0023390:81132-81151 None:intergenic 30.0%
! TAGCATGAATTGACTTACAT+AGG + tig0023390:81180-81199 None:intergenic 30.0%
TGGATTTCATTGAGTCTAAT+TGG - tig0023390:81406-81425 Msa1408580:CDS 30.0%
TAATTGGAGTTGCTAAATGT+TGG - tig0023390:81422-81441 Msa1408580:CDS 30.0%
AATTGGAGTTGCTAAATGTT+GGG - tig0023390:81423-81442 Msa1408580:CDS 30.0%
AAAAAAAATTCTGCAGCATC+TGG - tig0023390:81740-81759 Msa1408580:CDS 30.0%
!!! TTGATGGTTTTATTCATGAC+TGG + tig0023390:81784-81803 None:intergenic 30.0%
TCTGAATATCACACTATTTC+TGG - tig0023390:81811-81830 Msa1408580:CDS 30.0%
TCATCATATCACACTATTTC+TGG + tig0023390:81884-81903 None:intergenic 30.0%
! TAGGGACTAAATTTGAGATA+GGG - tig0023390:82051-82070 Msa1408580:CDS 30.0%
TAATTCAGGGACTAAATTGA+TGG - tig0023390:82077-82096 Msa1408580:CDS 30.0%
! CTATCTCTTTTACCAAAACA+AGG + tig0023390:82143-82162 None:intergenic 30.0%
ATTCAATAATTGCCCATGTA+TGG + tig0023390:82234-82253 None:intergenic 30.0%
!!! TTTTTTCATGGAAATGTCAC+AGG + tig0023390:82314-82333 None:intergenic 30.0%
GGTTATAGTATGCACTTAAT+GGG + tig0023390:82445-82464 None:intergenic 30.0%
TTGATTGATATGATGATACC+CGG - tig0023390:82535-82554 Msa1408580:intron 30.0%
!!! TGTTTGCCATTTTTGTTTTC+CGG + tig0023390:82557-82576 None:intergenic 30.0%
AATCATTCAAAGAAGTTTGC+AGG - tig0023390:82755-82774 Msa1408580:intron 30.0%
TGGCAGCTTATAATAAGAAA+AGG - tig0023390:83236-83255 Msa1408580:intron 30.0%
TCAGATATGAACTTGATATC+AGG - tig0023390:83400-83419 Msa1408580:intron 30.0%
!! GGCATCTTTTACTTTTAACA+TGG - tig0023390:83552-83571 Msa1408580:intron 30.0%
ATGCCAGAGTTAAATTTAGT+TGG + tig0023390:83672-83691 None:intergenic 30.0%
CTTGTACATTGGAATTCAAT+AGG - tig0023390:83692-83711 Msa1408580:intron 30.0%
ATTTCCTGACAGTTTATTTG+GGG + tig0023390:83739-83758 None:intergenic 30.0%
CAATTTCCTGACAGTTTATT+TGG + tig0023390:83741-83760 None:intergenic 30.0%
CAAATAAACTGTCAGGAAAT+TGG - tig0023390:83739-83758 Msa1408580:intron 30.0%
! GATGGTAAAGAATCTGAAAT+TGG - tig0023390:83790-83809 Msa1408580:intron 30.0%
ATCCATGTTCTTGATGTTAA+TGG + tig0023390:84046-84065 None:intergenic 30.0%
! GTAGACATTCAAGCTTTTAA+TGG - tig0023390:84233-84252 Msa1408580:CDS 30.0%
! AAGCTTTTAATGGTTTTCAC+CGG - tig0023390:84243-84262 Msa1408580:CDS 30.0%
!!! AAGTTTTGAATGGTTTTCAC+AGG - tig0023390:84320-84339 Msa1408580:five_prime_UTR 30.0%
TTAAAAAGTCTCTGACTATG+CGG - tig0023390:84353-84372 Msa1408580:five_prime_UTR 30.0%
GTGCAGAATTCATTTCGTAA+CGG + tig0023390:80932-80951 None:intergenic 35.0%
! TCATACGTCTTCTGAAGAAA+CGG + tig0023390:81005-81024 None:intergenic 35.0%
TGTTGTGCTTGAAATAGGTT+GGG + tig0023390:81127-81146 None:intergenic 35.0%
TTGTTGTGCTTGAAATAGGT+TGG + tig0023390:81128-81147 None:intergenic 35.0%
!! TTACATAGGTATTGAGCTGA+CGG + tig0023390:81166-81185 None:intergenic 35.0%
CTTAGTCGAGTTTCAATTAG+TGG - tig0023390:81300-81319 Msa1408580:CDS 35.0%
ATCCATCTTTCATCATTCTC+AGG + tig0023390:81450-81469 None:intergenic 35.0%
ACACTGAATTATGTCACTGT+CGG + tig0023390:81567-81586 None:intergenic 35.0%
AAATTAAGACCTACGAAGCA+TGG + tig0023390:81658-81677 None:intergenic 35.0%
! GCTTCGTAGGTCTTAATTTT+CGG - tig0023390:81659-81678 Msa1408580:CDS 35.0%
!! TAGGTCTTAATTTTCGGTGT+GGG - tig0023390:81665-81684 Msa1408580:CDS 35.0%
! GTGACTTGTGACTAAATTGA+CGG - tig0023390:81986-82005 Msa1408580:CDS 35.0%
! TGACTTGTGACTAAATTGAC+GGG - tig0023390:81987-82006 Msa1408580:CDS 35.0%
! GTAGGGACTAAATTTGAGAT+AGG - tig0023390:82050-82069 Msa1408580:CDS 35.0%
TTGAGATAGGGTGATAATTC+AGG - tig0023390:82063-82082 Msa1408580:CDS 35.0%
TGAGATAGGGTGATAATTCA+GGG - tig0023390:82064-82083 Msa1408580:CDS 35.0%
GGGTTATAGTATGCACTTAA+TGG + tig0023390:82446-82465 None:intergenic 35.0%
TGATACCCGGAAAACAAAAA+TGG - tig0023390:82548-82567 Msa1408580:intron 35.0%
!!! GTTTGCCATTTTTGTTTTCC+GGG + tig0023390:82556-82575 None:intergenic 35.0%
AAAACTTCAGGAAGCAAATC+TGG + tig0023390:82693-82712 None:intergenic 35.0%
AAAGAAGTTTGCAGGTCTTA+TGG - tig0023390:82763-82782 Msa1408580:intron 35.0%
ATAACTGTAGCTTAAGAGCT+TGG + tig0023390:83065-83084 None:intergenic 35.0%
! TTTGCAGAACTTCTTTGAGA+AGG - tig0023390:83156-83175 Msa1408580:intron 35.0%
! AATCCATGGATTCGATTTTG+CGG + tig0023390:83216-83235 None:intergenic 35.0%
CAAAATCGAATCCATGGATT+TGG - tig0023390:83216-83235 Msa1408580:intron 35.0%
ATTATAAGCTGCCAAATCCA+TGG + tig0023390:83230-83249 None:intergenic 35.0%
! AATTCCAGTCTGAAATTGCT+AGG + tig0023390:83319-83338 None:intergenic 35.0%
AGCAATTTCAGACTGGAATT+TGG - tig0023390:83319-83338 Msa1408580:intron 35.0%
GCAATTTCAGACTGGAATTT+GGG - tig0023390:83320-83339 Msa1408580:intron 35.0%
CAGAGTTAAATTTAGTTGGC+AGG + tig0023390:83668-83687 None:intergenic 35.0%
CTGCCAACTAAATTTAACTC+TGG - tig0023390:83666-83685 Msa1408580:intron 35.0%
AATTTCCTTACTGAAAGACC+AGG - tig0023390:83934-83953 Msa1408580:intron 35.0%
! ATTTGGAATTGCTCGATAGT+TGG + tig0023390:83986-84005 None:intergenic 35.0%
CAAATAGTGAGCAAGAAGAA+GGG - tig0023390:84001-84020 Msa1408580:intron 35.0%
CTCCATTAACATCAAGAACA+TGG - tig0023390:84041-84060 Msa1408580:CDS 35.0%
! CACTTTCAAGTCTACAATAC+CGG + tig0023390:84265-84284 None:intergenic 35.0%
GAAGCTCTTTCTTCTTGCTT+AGG + tig0023390:80869-80888 None:intergenic 40.0%
TCTTCAGAAGACGTATGACA+TGG - tig0023390:81007-81026 Msa1408580:three_prime_UTR 40.0%
! AATAGGTTGGGAGAAGAACA+CGG + tig0023390:81115-81134 None:intergenic 40.0%
GACCTGAGAATGATGAAAGA+TGG - tig0023390:81445-81464 Msa1408580:CDS 40.0%
TGAAGCACAAACATAGACAC+CGG - tig0023390:81507-81526 Msa1408580:CDS 40.0%
! TAAGGTGTTTGTGTTGTGTC+CGG + tig0023390:81529-81548 None:intergenic 40.0%
AATTATGTCACTGTCGGTGT+CGG + tig0023390:81561-81580 None:intergenic 40.0%
! CATACGTGTCATTGTTGTGT+CGG - tig0023390:81590-81609 Msa1408580:CDS 40.0%
! GTAGGTCTTAATTTTCGGTG+TGG - tig0023390:81664-81683 Msa1408580:CDS 40.0%
! TGTGAATTGGTGGGTGATTT+AGG - tig0023390:81690-81709 Msa1408580:CDS 40.0%
CAAAACAAGGACGAGTTGTA+TGG + tig0023390:82130-82149 None:intergenic 40.0%
!! CATACAACTCGTCCTTGTTT+TGG - tig0023390:82128-82147 Msa1408580:CDS 40.0%
! TGACTGACACGGGAAATTTT+GGG + tig0023390:82269-82288 None:intergenic 40.0%
! ATGACTGACACGGGAAATTT+TGG + tig0023390:82270-82289 None:intergenic 40.0%
TCTTTCACATGGCTAACCTA+TGG - tig0023390:82389-82408 Msa1408580:intron 40.0%
CTTTCACATGGCTAACCTAT+GGG - tig0023390:82390-82409 Msa1408580:intron 40.0%
! TTCTGAAGAATATACACCGC+AGG - tig0023390:82930-82949 Msa1408580:intron 40.0%
GGATGACTATGACTGTGAAT+AGG + tig0023390:82959-82978 None:intergenic 40.0%
TTCTGCTGTAGATCCAGAAA+GGG - tig0023390:82985-83004 Msa1408580:intron 40.0%
GCTTAAGAGCTTGGATTGAA+GGG + tig0023390:83056-83075 None:intergenic 40.0%
AGCTTAAGAGCTTGGATTGA+AGG + tig0023390:83057-83076 None:intergenic 40.0%
! TTCAGCTGGAAGATTTTCAG+CGG - tig0023390:83101-83120 Msa1408580:intron 40.0%
! ATCCATGGATTCGATTTTGC+GGG + tig0023390:83215-83234 None:intergenic 40.0%
ATTGTCAACCAAGCTACCTT+CGG + tig0023390:83296-83315 None:intergenic 40.0%
CAATCCTAGCAATTTCAGAC+TGG - tig0023390:83312-83331 Msa1408580:intron 40.0%
! AAGTTCATATCTGAGACAGC+TGG + tig0023390:83394-83413 None:intergenic 40.0%
TTGATATCAGGTAGCACACA+GGG - tig0023390:83412-83431 Msa1408580:intron 40.0%
! CTTCAGACAGATTTTTCTGC+AGG + tig0023390:83459-83478 None:intergenic 40.0%
CTGCAGAAAAATCTGTCTGA+AGG - tig0023390:83457-83476 Msa1408580:intron 40.0%
GCTCCAGAGAATGAAGATTT+GGG + tig0023390:83615-83634 None:intergenic 40.0%
CTATCACCTTCTTCAGTACT+TGG + tig0023390:83637-83656 None:intergenic 40.0%
AACTCTGGCATCTTGTACAT+TGG - tig0023390:83681-83700 Msa1408580:intron 40.0%
CTGTCAGGAAATTGGCAATT+TGG - tig0023390:83747-83766 Msa1408580:intron 40.0%
AGTTTCCACAAACCGAAATG+TGG - tig0023390:83813-83832 Msa1408580:intron 40.0%
! ATTAGCCACATTTCGGTTTG+TGG + tig0023390:83821-83840 None:intergenic 40.0%
AAACCGAAATGTGGCTAATG+AGG - tig0023390:83822-83841 Msa1408580:intron 40.0%
TAGCCTCATTAGCCACATTT+CGG + tig0023390:83828-83847 None:intergenic 40.0%
! TATCAATCTAGCTCCACCAA+AGG - tig0023390:83846-83865 Msa1408580:intron 40.0%
CCTTCTTCTTGCTCACTATT+TGG + tig0023390:84003-84022 None:intergenic 40.0%
CCAAATAGTGAGCAAGAAGA+AGG - tig0023390:84000-84019 Msa1408580:intron 40.0%
TGTCTTGGGACACTTACTAT+TGG - tig0023390:84087-84106 Msa1408580:CDS 40.0%
TGCATTGCGAATTAGTTGTC+TGG - tig0023390:84203-84222 Msa1408580:CDS 40.0%
!! TCTTTGTTGGCGTTTGCTGT+TGG + tig0023390:80842-80861 None:intergenic 45.0%
!! TTGCTTAGGCTGGTCTTTGT+TGG + tig0023390:80855-80874 None:intergenic 45.0%
CTCTTTCTTCTTGCTTAGGC+TGG + tig0023390:80865-80884 None:intergenic 45.0%
TCAGAAGACGTATGACATGG+TGG - tig0023390:81010-81029 Msa1408580:three_prime_UTR 45.0%
AGAAACGATCTCATCTGTGG+TGG + tig0023390:81042-81061 None:intergenic 45.0%
CCAAGAAACGATCTCATCTG+TGG + tig0023390:81045-81064 None:intergenic 45.0%
CCACAGATGAGATCGTTTCT+TGG - tig0023390:81042-81061 Msa1408580:three_prime_UTR 45.0%
AGAAGAACACGGGAGAATTC+AGG + tig0023390:81104-81123 None:intergenic 45.0%
! ATAGGTTGGGAGAAGAACAC+GGG + tig0023390:81114-81133 None:intergenic 45.0%
TACGAAGCATGGACAATCCT+CGG + tig0023390:81647-81666 None:intergenic 45.0%
ATTCTGCAGCATCTGGATCT+TGG - tig0023390:81747-81766 Msa1408580:CDS 45.0%
CAGCATCTGGATCTTGGTAA+TGG - tig0023390:81753-81772 Msa1408580:CDS 45.0%
GTTCGCGAATGTGTCATGAA+CGG - tig0023390:82180-82199 Msa1408580:CDS 45.0%
AACCTGCGTCTAACCATACA+TGG - tig0023390:82218-82237 Msa1408580:CDS 45.0%
ACCTGCGTCTAACCATACAT+GGG - tig0023390:82219-82238 Msa1408580:CDS 45.0%
AGACACATCATGACTGACAC+GGG + tig0023390:82279-82298 None:intergenic 45.0%
CAGACACATCATGACTGACA+CGG + tig0023390:82280-82299 None:intergenic 45.0%
ATGTCTACGATGCAGAAGAC+AGG + tig0023390:82491-82510 None:intergenic 45.0%
CGTAGACATCTCAAGCATCT+AGG - tig0023390:82502-82521 Msa1408580:intron 45.0%
ACTTCAGGAAGCAAATCTGG+CGG + tig0023390:82690-82709 None:intergenic 45.0%
AAAAGCAGATCCTGAGCGTT+GGG - tig0023390:82868-82887 Msa1408580:intron 45.0%
GACTGTGAATAGGTTTCCTG+CGG + tig0023390:82949-82968 None:intergenic 45.0%
TCACAGTCATAGTCATCCTC+CGG - tig0023390:82961-82980 Msa1408580:intron 45.0%
GTTCTGCTGTAGATCCAGAA+AGG - tig0023390:82984-83003 Msa1408580:intron 45.0%
TGAGACAGAAAAGCTTCAGC+TGG - tig0023390:83087-83106 Msa1408580:intron 45.0%
! CTTCTTTGAGAAGGCTCTTC+AGG - tig0023390:83165-83184 Msa1408580:intron 45.0%
TTCCCGCAAAATCGAATCCA+TGG - tig0023390:83210-83229 Msa1408580:intron 45.0%
TAAGAAAAGGCGATTGCCTC+AGG - tig0023390:83249-83268 Msa1408580:intron 45.0%
CTTGATATCAGGTAGCACAC+AGG - tig0023390:83411-83430 Msa1408580:intron 45.0%
ACAGGGTTCAAACGAAGATG+AGG - tig0023390:83429-83448 Msa1408580:intron 45.0%
ACAGGAATGCAGACAAGAAC+TGG - tig0023390:83487-83506 Msa1408580:intron 45.0%
GTGTTTCAGGGGTAAAAGCA+AGG + tig0023390:83513-83532 None:intergenic 45.0%
TGCAAGGTCTAGTGTTTCAG+GGG + tig0023390:83524-83543 None:intergenic 45.0%
CTGCAAGGTCTAGTGTTTCA+GGG + tig0023390:83525-83544 None:intergenic 45.0%
TCTGCAAGGTCTAGTGTTTC+AGG + tig0023390:83526-83545 None:intergenic 45.0%
ACACTAGACCTTGCAGATAC+TGG - tig0023390:83529-83548 Msa1408580:intron 45.0%
CACTAGACCTTGCAGATACT+GGG - tig0023390:83530-83549 Msa1408580:intron 45.0%
ACTAGACCTTGCAGATACTG+GGG - tig0023390:83531-83550 Msa1408580:intron 45.0%
GTGCCCAAATCTTCATTCTC+TGG - tig0023390:83609-83628 Msa1408580:intron 45.0%
GGCTCCAGAGAATGAAGATT+TGG + tig0023390:83616-83635 None:intergenic 45.0%
ATAGGAATTCATACTCGGCC+AGG - tig0023390:83710-83729 Msa1408580:intron 45.0%
GAGTCAAGAGTTAACGCTGA+TGG - tig0023390:83772-83791 Msa1408580:intron 45.0%
! ACGGGGTGAATGATGTGTTT+TGG - tig0023390:83908-83927 Msa1408580:intron 45.0%
! CGGGGTGAATGATGTGTTTT+GGG - tig0023390:83909-83928 Msa1408580:intron 45.0%
! AACAGCCTGGTCTTTCAGTA+AGG + tig0023390:83942-83961 None:intergenic 45.0%
TCTTCATTGTCTGAACAGCC+TGG + tig0023390:83955-83974 None:intergenic 45.0%
AGGCTGTTCAGACAATGAAG+AGG - tig0023390:83954-83973 Msa1408580:intron 45.0%
ATAGTGAGCAAGAAGAAGGG+CGG - tig0023390:84004-84023 Msa1408580:intron 45.0%
! GTCTTCTGAAGAAACGGTGC+CGG + tig0023390:80999-81018 None:intergenic 50.0%
GAACACGGGAGAATTCAGGA+GGG + tig0023390:81100-81119 None:intergenic 50.0%
AGAACACGGGAGAATTCAGG+AGG + tig0023390:81101-81120 None:intergenic 50.0%
! ATTGAGCTGACGGATGAAGC+TGG + tig0023390:81156-81175 None:intergenic 50.0%
GATTAGGTGTGTCCTGACGT+CGG + tig0023390:81625-81644 None:intergenic 50.0%
GCATGGACAATCCTCGGATT+AGG + tig0023390:81641-81660 None:intergenic 50.0%
GAGGATTGTCCATGCTTCGT+AGG - tig0023390:81646-81665 Msa1408580:CDS 50.0%
! TTCGGTGTGGGTGTGTGAAT+TGG - tig0023390:81677-81696 Msa1408580:CDS 50.0%
GTGTGGGTGTGTGAATTGGT+GGG - tig0023390:81681-81700 Msa1408580:CDS 50.0%
! GGTTAGACGCAGGTTCTAAC+TGG + tig0023390:82213-82232 None:intergenic 50.0%
! GGCTAACCTATGGGTGCTTT+TGG - tig0023390:82399-82418 Msa1408580:intron 50.0%
!! AGGGTTCCAAAAGCACCCAT+AGG + tig0023390:82408-82427 None:intergenic 50.0%
CTACGATGCAGAAGACAGGT+AGG + tig0023390:82487-82506 None:intergenic 50.0%
GAAAAGCAGATCCTGAGCGT+TGG - tig0023390:82867-82886 Msa1408580:intron 50.0%
CACAGTCATAGTCATCCTCC+GGG - tig0023390:82962-82981 Msa1408580:intron 50.0%
TCTGGATCTACAGCAGAACC+CGG + tig0023390:82983-83002 None:intergenic 50.0%
AGATCCAGAAAGGGCAGCAT+TGG - tig0023390:82994-83013 Msa1408580:intron 50.0%
! GGAAGATTTTCAGCGGCGAT+TGG - tig0023390:83108-83127 Msa1408580:intron 50.0%
! GATTTTCAGCGGCGATTGGA+TGG - tig0023390:83112-83131 Msa1408580:intron 50.0%
GATTGGATGGCATGGAGAAG+AGG - tig0023390:83125-83144 Msa1408580:intron 50.0%
CTGTCTGAAGGAGAACTGAC+AGG - tig0023390:83469-83488 Msa1408580:intron 50.0%
AAGATGCCCCAGTATCTGCA+AGG + tig0023390:83540-83559 None:intergenic 50.0%
!! CTGGAGCCAAGTACTGAAGA+AGG - tig0023390:83628-83647 Msa1408580:intron 50.0%
! ACAGTTTATTTGGGGCGACC+TGG + tig0023390:83731-83750 None:intergenic 50.0%
GTCGCCCCAAATAAACTGTC+AGG - tig0023390:83732-83751 Msa1408580:intron 50.0%
! CAATCTAGCTCCACCAAAGG+AGG - tig0023390:83849-83868 Msa1408580:intron 50.0%
TTACCTGAAGCCTCCTTTGG+TGG + tig0023390:83862-83881 None:intergenic 50.0%
ACGTTACCTGAAGCCTCCTT+TGG + tig0023390:83865-83884 None:intergenic 50.0%
TCCAAGTCAAAGCTGCTGCT+CGG - tig0023390:83884-83903 Msa1408580:intron 50.0%
ACCCTTTGAGCATGCTGTCT+TGG - tig0023390:84072-84091 Msa1408580:CDS 50.0%
CCCAAGACAGCATGCTCAAA+GGG + tig0023390:84076-84095 None:intergenic 50.0%
CCCTTTGAGCATGCTGTCTT+GGG - tig0023390:84073-84092 Msa1408580:CDS 50.0%
TCCCAAGACAGCATGCTCAA+AGG + tig0023390:84077-84096 None:intergenic 50.0%
GTCAGGACACACCTAATCCG+AGG - tig0023390:81627-81646 Msa1408580:CDS 55.0%
GGTGTGGGTGTGTGAATTGG+TGG - tig0023390:81680-81699 Msa1408580:CDS 55.0%
GCCCATGTATGGTTAGACGC+AGG + tig0023390:82223-82242 None:intergenic 55.0%
CAGGAAGCAAATCTGGCGGT+GGG + tig0023390:82686-82705 None:intergenic 55.0%
TCAGGAAGCAAATCTGGCGG+TGG + tig0023390:82687-82706 None:intergenic 55.0%
TTGGCAAACTCCCAACGCTC+AGG + tig0023390:82881-82900 None:intergenic 55.0%
TGCTCCAATGCTGCCCTTTC+TGG + tig0023390:83001-83020 None:intergenic 55.0%
ACCAAGCTACCTTCGGCAAC+AGG + tig0023390:83289-83308 None:intergenic 55.0%
GAAGAAGGGCGGTCAGTTCA+TGG - tig0023390:84015-84034 Msa1408580:intron 55.0%
GCAGCGGCTGATGAGGATTG+TGG + tig0023390:80954-80973 None:intergenic 60.0%
!! GTCACTGTCGGTGTCGGTGT+CGG + tig0023390:81555-81574 None:intergenic 60.0%
GGATCTACAGCAGAACCCGG+AGG + tig0023390:82980-82999 None:intergenic 60.0%
TCAGCGGCGATTGGATGGCA+TGG - tig0023390:83117-83136 Msa1408580:intron 60.0%
GGCTGCACGTGATCAACCTG+AGG + tig0023390:83268-83287 None:intergenic 60.0%
GCCTGTTGCCGAAGGTAGCT+TGG - tig0023390:83285-83304 Msa1408580:intron 60.0%
GCTCCACCAAAGGAGGCTTC+AGG - tig0023390:83856-83875 Msa1408580:intron 60.0%
! GCCGAGCAGCAGCTTTGACT+TGG + tig0023390:83888-83907 None:intergenic 60.0%
GTCAAAGCTGCTGCTCGGCA+CGG - tig0023390:83889-83908 Msa1408580:intron 60.0%
TCAAAGCTGCTGCTCGGCAC+GGG - tig0023390:83890-83909 Msa1408580:intron 60.0%
!! CGGTGTCGGTGTCGGCGATA+AGG + tig0023390:81547-81566 None:intergenic 65.0%
! CGGTGTCAGACACCGACGTC+AGG - tig0023390:81610-81629 Msa1408580:CDS 65.0%
CACGTGCAGCCTGTTGCCGA+AGG - tig0023390:83277-83296 Msa1408580:intron 65.0%
CAAAGCTGCTGCTCGGCACG+GGG - tig0023390:83891-83910 Msa1408580:intron 65.0%
TCCTCATCAGCCGCTGCCGC+CGG - tig0023390:80957-80976 Msa1408580:three_prime_UTR 70.0%
ACCTCCTCCGCTTCCTCCGG+CGG + tig0023390:80976-80995 None:intergenic 70.0%
CGGACCTCCTCCGCTTCCTC+CGG + tig0023390:80979-80998 None:intergenic 70.0%
CGGAGGAAGCGGAGGAGGTC+CGG - tig0023390:80977-80996 Msa1408580:three_prime_UTR 70.0%
TCCGGCGGCAGCGGCTGATG+AGG + tig0023390:80961-80980 None:intergenic 75.0%
TCATCAGCCGCTGCCGCCGG+AGG - tig0023390:80960-80979 Msa1408580:three_prime_UTR 75.0%
TCCGCTTCCTCCGGCGGCAG+CGG + tig0023390:80970-80989 None:intergenic 75.0%
! GCCGCTGCCGCCGGAGGAAG+CGG - tig0023390:80966-80985 Msa1408580:three_prime_UTR 80.0%
! GCTGCCGCCGGAGGAAGCGG+AGG - tig0023390:80969-80988 Msa1408580:three_prime_UTR 80.0%
! GCCGCCGGAGGAAGCGGAGG+AGG - tig0023390:80972-80991 Msa1408580:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0023390 gene 80837 84380 80837 ID=Msa1408580;Name=Msa1408580
tig0023390 mRNA 80837 84380 80837 ID=Msa1408580-mRNA-1;Parent=Msa1408580;Name=Msa1408580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=102|1|1|1|1|1|2|300|487
tig0023390 exon 80837 82357 80837 ID=Msa1408580-mRNA-1:exon:25629;Parent=Msa1408580-mRNA-1
tig0023390 exon 84036 84380 84036 ID=Msa1408580-mRNA-1:exon:25628;Parent=Msa1408580-mRNA-1
tig0023390 five_prime_UTR 84279 84380 84279 ID=Msa1408580-mRNA-1:five_prime_utr;Parent=Msa1408580-mRNA-1
tig0023390 CDS 84036 84278 84036 ID=Msa1408580-mRNA-1:cds;Parent=Msa1408580-mRNA-1
tig0023390 CDS 81137 82357 81137 ID=Msa1408580-mRNA-1:cds;Parent=Msa1408580-mRNA-1
tig0023390 three_prime_UTR 80837 81136 80837 ID=Msa1408580-mRNA-1:three_prime_utr;Parent=Msa1408580-mRNA-1
Gene Sequence

>Msa1408580

ATGAATTCTGCACCACAATCCTCATCAGCCGCTGCCGCCGGAGGAAGCGGAGGAGGTCCGGCACCGTTTCTTCAGAAGACGTATGACATGGTGGATGATTCCACCACAGATGAGATCGTTTCTTGGAGCTCTGATAACAAAAGCTTCATTGTTTGGAACCCTCCTGAATTCTCCCGTGTTCTTCTCCCAACCTATTTCAAGCACAACAATTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAGCAGATCCTGAGCGTTGGGAGTTTGCCAATGAAGAATTTATAAAAGATCAAAAACATCTTCTGAAGAATATACACCGCAGGAAACCTATTCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGCAGCATTGGAGCAAGAAATAGAGAAGCTGTCTCGCGAGAAAAATGCCCTTCAATCCAAGCTCTTAAGCTACAGTTATCTTGAGACAGAAAAGCTTCAGCTGGAAGATTTTCAGCGGCGATTGGATGGCATGGAGAAGAGGCAGACAAATTTGCAGAACTTCTTTGAGAAGGCTCTTCAGGATTCTTTTATTGTTGAACTTCTTTCCCGCAAAATCGAATCCATGGATTTGGCAGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATCACGTGCAGCCTGTTGCCGAAGGTAGCTTGGTTGACAATCCTAGCAATTTCAGACTGGAATTTGGGAATGTATTCCCTCAAGATATCTCAAATAAACTCAGACTAGAATTGTCACCAGCTGTCTCAGATATGAACTTGATATCAGGTAGCACACAGGGTTCAAACGAAGATGAGGAAAGCCTGCAGAAAAATCTGTCTGAAGGAGAACTGACAGGAATGCAGACAAGAACTGGCCTTGCTTTTACCCCTGAAACACTAGACCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCGTGTTTATCACAAAGAGCAACTACTACTGAGTGCCCAAATCTTCATTCTCTGGAGCCAAGTACTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTACATTGGAATTCAATAGGAATTCATACTCGGCCAGGTCGCCCCAAATAAACTGTCAGGAAATTGGCAATTTGGCAGAGTCAAGAGTTAACGCTGATGGTAAAGAATCTGAAATTGGAGTTTCCACAAACCGAAATGTGGCTAATGAGGCTATCAATCTAGCTCCACCAAAGGAGGCTTCAGGTAACGTCCAAGTCAAAGCTGCTGCTCGGCACGGGGTGAATGATGTGTTTTGGGAAAATTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTATCGAGCAATTCCAAATAGTGAGCAAGAAGAAGGGCGGTCAGTTCATGGAATCTCCATTAACATCAAGAACATGGATAATCTCACCCTTTGA
Protein sequence

>Msa1408580

MNSAPQSSSAAAAGGSGGGPAPFLQKTYDMVDDSTTDEIVSWSSDNKSFIVWNPPEFSRVLLPTYFKHNNFSSFIRQLNTYGFRKADPERWEFANEEFIKDQKHLLKNIHRRKPIHSHSHPPGSAVDPERAALEQEIEKLSREKNALQSKLLSYSYLETEKLQLEDFQRRLDGMEKRQTNLQNFFEKALQDSFIVELLSRKIESMDLAAYNKKRRLPQVDHVQPVAEGSLVDNPSNFRLEFGNVFPQDISNKLRLELSPAVSDMNLISGSTQGSNEDEESLQKNLSEGELTGMQTRTGLAFTPETLDLADTGASFTFNMDSCLSQRATTTECPNLHSLEPSTEEGDSHISCQLNLTLASCTLEFNRNSYSARSPQINCQEIGNLAESRVNADGKESEIGVSTNRNVANEAINLAPPKEASGNVQVKAAARHGVNDVFWENFLTERPGCSDNEEAISNYRAIPNSEQEEGRSVHGISINIKNMDNLTL*