Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700570 | XP_003629611.1 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700570 | sp|Q94BZ5|HSFA5_ARATH | 51.107 | 497 | 202 | 10 | 1 | 487 | 1 | 466 | 2.89e-144 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700570 | G7LH28 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0700570 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0116940 | Msa0700570 | 0.816724 | 4.771869e-52 | -8.615850e-47 |
| Msa0700570 | Msa1064240 | 0.822803 | 1.947977e-53 | -8.615850e-47 |
| Msa0700570 | Msa1154240 | 0.815843 | 7.508710e-52 | -8.615850e-47 |
| Msa0700570 | Msa1172980 | 0.827827 | 1.261551e-54 | -8.615850e-47 |
| Msa0700570 | Msa1408580 | 0.877605 | 5.497121e-69 | -8.615850e-47 |
| Msa0211590 | Msa0700570 | -0.802471 | 5.524107e-49 | -8.615850e-47 |
| Msa0431550 | Msa0700570 | -0.800215 | 1.600122e-48 | -8.615850e-47 |
| Msa0476560 | Msa0700570 | -0.802147 | 6.440324e-49 | -8.615850e-47 |
| Msa0503220 | Msa0700570 | 0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa0564090 | Msa0700570 | 0.886810 | 2.472863e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700570 | MtrunA17_Chr8g0378061 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Msa0700570 | MtrunA17_Chr2g0330841 | 73.037 | 382 | 96 | 2 | 64 | 444 | 29 | 404 | 0.0 | 559 |
| Msa0700570 | MtrunA17_Chr6g0467041 | 85.616 | 292 | 42 | 0 | 1 | 292 | 1 | 292 | 0.0 | 516 |
| Msa0700570 | MtrunA17_Chr6g0467041 | 75.556 | 45 | 11 | 0 | 412 | 456 | 284 | 328 | 1.02e-14 | 75.1 |
| Msa0700570 | MtrunA17_Chr2g0330821 | 68.792 | 298 | 73 | 3 | 1 | 297 | 60 | 338 | 1.81e-137 | 400 |
| Msa0700570 | MtrunA17_Chr5g0410881 | 50.935 | 214 | 91 | 4 | 19 | 218 | 29 | 242 | 8.46e-65 | 218 |
| Msa0700570 | MtrunA17_Chr8g0379701 | 51.905 | 210 | 90 | 4 | 13 | 217 | 4 | 207 | 2.80e-63 | 211 |
| Msa0700570 | MtrunA17_Chr4g0039891 | 46.860 | 207 | 98 | 3 | 22 | 216 | 12 | 218 | 5.38e-56 | 194 |
| Msa0700570 | MtrunA17_Chr1g0204741 | 46.117 | 206 | 99 | 5 | 19 | 215 | 37 | 239 | 2.58e-51 | 177 |
| Msa0700570 | MtrunA17_Chr7g0260331 | 46.411 | 209 | 102 | 4 | 19 | 217 | 46 | 254 | 3.86e-51 | 177 |
| Msa0700570 | MtrunA17_Chr6g0470901 | 80.000 | 105 | 17 | 1 | 220 | 324 | 49 | 149 | 5.11e-49 | 165 |
| Msa0700570 | MtrunA17_Chr3g0135831 | 44.390 | 205 | 104 | 5 | 19 | 216 | 43 | 244 | 7.81e-49 | 172 |
| Msa0700570 | MtrunA17_Chr4g0071051 | 46.774 | 186 | 95 | 2 | 19 | 203 | 98 | 280 | 8.13e-49 | 173 |
| Msa0700570 | MtrunA17_Chr1g0185131 | 44.633 | 177 | 90 | 2 | 20 | 195 | 30 | 199 | 1.19e-46 | 165 |
| Msa0700570 | MtrunA17_Chr8g0392001 | 48.969 | 194 | 86 | 6 | 21 | 201 | 21 | 214 | 2.44e-44 | 159 |
| Msa0700570 | MtrunA17_Chr3g0134031 | 72.340 | 94 | 26 | 0 | 20 | 113 | 22 | 115 | 1.33e-43 | 157 |
| Msa0700570 | MtrunA17_Chr2g0284481 | 62.037 | 108 | 41 | 0 | 12 | 119 | 5 | 112 | 3.20e-42 | 154 |
| Msa0700570 | MtrunA17_Chr5g0397881 | 61.111 | 108 | 42 | 0 | 6 | 113 | 8 | 115 | 5.41e-42 | 153 |
| Msa0700570 | MtrunA17_Chr5g0402291 | 61.538 | 104 | 40 | 0 | 19 | 122 | 6 | 109 | 2.55e-41 | 149 |
| Msa0700570 | MtrunA17_Chr5g0441531 | 69.149 | 94 | 29 | 0 | 20 | 113 | 23 | 116 | 4.06e-41 | 147 |
| Msa0700570 | MtrunA17_Chr6g0485571 | 39.286 | 224 | 103 | 4 | 21 | 230 | 10 | 214 | 8.81e-41 | 149 |
| Msa0700570 | MtrunA17_Chr6g0472421 | 63.830 | 94 | 34 | 0 | 20 | 113 | 31 | 124 | 4.03e-38 | 142 |
| Msa0700570 | MtrunA17_Chr1g0203601 | 60.417 | 96 | 38 | 0 | 20 | 115 | 16 | 111 | 2.81e-37 | 139 |
| Msa0700570 | MtrunA17_Chr7g0257331 | 51.327 | 113 | 55 | 0 | 1 | 113 | 1 | 113 | 5.36e-36 | 133 |
| Msa0700570 | MtrunA17_Chr4g0047421 | 57.143 | 98 | 38 | 1 | 20 | 113 | 31 | 128 | 2.37e-33 | 125 |
| Msa0700570 | MtrunA17_Chr8g0375041 | 58.065 | 93 | 39 | 0 | 21 | 113 | 8 | 100 | 4.33e-32 | 123 |
| Msa0700570 | MtrunA17_Chr1g0179321 | 65.000 | 60 | 21 | 0 | 22 | 81 | 49 | 108 | 1.39e-23 | 95.5 |
| Msa0700570 | MtrunA17_Chr4g0023771 | 67.213 | 61 | 19 | 1 | 22 | 81 | 15 | 75 | 4.91e-21 | 88.2 |
| Msa0700570 | MtrunA17_Chr1g0179311 | 27.239 | 268 | 176 | 9 | 61 | 323 | 1 | 254 | 2.03e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0700570 | AT4G13980.1 | 51.107 | 497 | 202 | 10 | 1 | 487 | 1 | 466 | 2.94e-145 | 424 |
| Msa0700570 | AT1G32330.2 | 47.660 | 235 | 104 | 5 | 1 | 216 | 16 | 250 | 6.85e-61 | 207 |
| Msa0700570 | AT1G32330.1 | 47.660 | 235 | 104 | 5 | 1 | 216 | 16 | 250 | 7.73e-61 | 207 |
| Msa0700570 | AT4G17750.1 | 46.352 | 233 | 104 | 4 | 5 | 216 | 35 | 267 | 4.30e-60 | 205 |
| Msa0700570 | AT5G16820.1 | 50.000 | 210 | 90 | 5 | 22 | 217 | 27 | 235 | 2.66e-58 | 200 |
| Msa0700570 | AT5G16820.2 | 50.000 | 210 | 90 | 5 | 22 | 217 | 27 | 235 | 2.66e-58 | 200 |
| Msa0700570 | AT3G02990.1 | 46.119 | 219 | 105 | 4 | 22 | 228 | 23 | 240 | 1.55e-57 | 197 |
| Msa0700570 | AT4G18880.1 | 51.643 | 213 | 93 | 3 | 14 | 220 | 7 | 215 | 1.47e-55 | 191 |
| Msa0700570 | AT3G22830.1 | 43.662 | 213 | 106 | 4 | 19 | 217 | 58 | 270 | 3.80e-50 | 176 |
| Msa0700570 | AT2G26150.1 | 43.243 | 222 | 118 | 4 | 19 | 232 | 41 | 262 | 7.35e-50 | 174 |
| Msa0700570 | AT2G26150.4 | 43.243 | 222 | 118 | 4 | 19 | 232 | 41 | 262 | 7.35e-50 | 174 |
| Msa0700570 | AT5G45710.3 | 46.296 | 216 | 101 | 4 | 14 | 224 | 6 | 211 | 1.82e-49 | 173 |
| Msa0700570 | AT5G45710.1 | 46.296 | 216 | 101 | 4 | 14 | 224 | 6 | 211 | 1.82e-49 | 173 |
| Msa0700570 | AT3G51910.1 | 43.478 | 207 | 101 | 4 | 14 | 215 | 21 | 216 | 9.20e-48 | 166 |
| Msa0700570 | AT5G43840.1 | 45.745 | 188 | 90 | 3 | 20 | 205 | 17 | 194 | 8.53e-46 | 161 |
| Msa0700570 | AT5G03720.2 | 45.556 | 180 | 95 | 2 | 22 | 198 | 55 | 234 | 4.65e-45 | 163 |
| Msa0700570 | AT5G03720.1 | 45.556 | 180 | 95 | 2 | 22 | 198 | 55 | 234 | 4.65e-45 | 163 |
| Msa0700570 | AT1G46264.1 | 60.504 | 119 | 37 | 1 | 14 | 122 | 26 | 144 | 5.92e-44 | 158 |
| Msa0700570 | AT1G67970.1 | 45.550 | 191 | 91 | 5 | 21 | 201 | 18 | 205 | 1.52e-43 | 158 |
| Msa0700570 | AT3G24520.1 | 44.809 | 183 | 78 | 4 | 21 | 202 | 16 | 176 | 5.20e-43 | 155 |
| Msa0700570 | AT3G63350.1 | 37.447 | 235 | 132 | 3 | 5 | 227 | 3 | 234 | 1.69e-42 | 152 |
| Msa0700570 | AT5G54070.1 | 42.029 | 207 | 109 | 3 | 18 | 218 | 67 | 268 | 2.12e-42 | 154 |
| Msa0700570 | AT5G62020.1 | 52.101 | 119 | 56 | 1 | 1 | 118 | 1 | 119 | 5.29e-38 | 141 |
| Msa0700570 | AT4G11660.1 | 62.766 | 94 | 35 | 0 | 20 | 113 | 57 | 150 | 2.74e-37 | 141 |
| Msa0700570 | AT4G36990.1 | 60.417 | 96 | 38 | 0 | 20 | 115 | 12 | 107 | 4.89e-37 | 138 |
| Msa0700570 | AT2G41690.1 | 53.846 | 117 | 54 | 0 | 20 | 136 | 38 | 154 | 1.14e-36 | 135 |
| Msa0700570 | AT4G18870.1 | 47.368 | 95 | 49 | 1 | 15 | 109 | 6 | 99 | 3.92e-21 | 94.0 |
| Msa0700570 | AT4G18870.1 | 45.455 | 88 | 48 | 0 | 22 | 109 | 146 | 233 | 5.91e-21 | 93.6 |
| Msa0700570 | AT1G77570.1 | 42.222 | 90 | 49 | 2 | 23 | 109 | 27 | 116 | 7.40e-18 | 80.9 |
| Msa0700570 | AT2G26150.3 | 35.664 | 143 | 84 | 4 | 82 | 216 | 49 | 191 | 1.65e-16 | 80.5 |
| Msa0700570 | AT2G26150.2 | 35.664 | 143 | 84 | 4 | 82 | 216 | 49 | 191 | 1.65e-16 | 80.5 |
Find 143 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCAATGCTGCCCTTTC+TGG | -0.033953 | 4_4:-71667959 | None:intergenic |
| CAATTTCCTGACAGTTTATT+TGG | 0.134687 | 4_4:-71668699 | None:intergenic |
| TCTGCAAGGTCTAGTGTTTC+AGG | 0.179480 | 4_4:-71668484 | None:intergenic |
| AGCAATTTCAGACTGGAATT+TGG | 0.185327 | 4_4:+71668280 | Msa0700570:CDS |
| CCTTCTTCTTGCTCACTATT+TGG | 0.197563 | 4_4:-71668961 | None:intergenic |
| CTTCTTTGAGAAGGCTCTTC+AGG | 0.211830 | 4_4:+71668126 | Msa0700570:CDS |
| ATCCATGTTCTTGATGTTAC+TGG | 0.248725 | 4_4:-71669004 | None:intergenic |
| CAAATAAACTGTCAGGAAAT+TGG | 0.249049 | 4_4:+71668700 | Msa0700570:CDS |
| GGCTCCAGAGAATGAAGATT+TGG | 0.274713 | 4_4:-71668574 | None:intergenic |
| ACACTAGACCTTGCAGATAC+TGG | 0.281618 | 4_4:+71668490 | Msa0700570:CDS |
| CTGTCAGGAAATTGGCAATT+TGG | 0.285988 | 4_4:+71668708 | Msa0700570:CDS |
| GAAATTGTTGTGCTTGAAAT+AGG | 0.289577 | 4_4:-71666090 | None:intergenic |
| CCCTTTGAGCATGCTGTCTT+GGG | 0.294399 | 4_4:+71669034 | Msa0700570:exon |
| AATTTCCTGACAGTTTATTT+GGG | 0.297215 | 4_4:-71668698 | None:intergenic |
| ATAACAAAAGCTTCATTGTT+TGG | 0.304742 | 4_4:+71666033 | Msa0700570:CDS |
| CTCTTTCTTCTTGCTTAGGC+TGG | 0.312182 | 4_4:-71665821 | None:intergenic |
| ACGGGGTGAATGATGTGTTT+TGG | 0.315138 | 4_4:+71668869 | Msa0700570:CDS |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 4_4:+71666003 | Msa0700570:CDS |
| ACCCTTTGAGCATGCTGTCT+TGG | 0.321674 | 4_4:+71669033 | Msa0700570:exon |
| GCAATTTCAGACTGGAATTT+GGG | 0.327997 | 4_4:+71668281 | Msa0700570:CDS |
| GATGGTAAAGAATCTGAAAT+TGG | 0.330710 | 4_4:+71668751 | Msa0700570:CDS |
| CTTGTACATTGGAATTCAAT+AGG | 0.346549 | 4_4:+71668653 | Msa0700570:CDS |
| AGAAGAACACGGGAGAATTC+AGG | 0.363985 | 4_4:-71666062 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.364324 | 4_4:+71668177 | Msa0700570:CDS |
| AACTCTGGCATCTTGTACAT+TGG | 0.365517 | 4_4:+71668642 | Msa0700570:CDS |
| CTATCACCTTCTTCAGTACT+TGG | 0.371141 | 4_4:-71668595 | None:intergenic |
| GAAGAAGGGCGGTCAGTTCA+TGG | 0.385884 | 4_4:+71668976 | Msa0700570:CDS |
| ATTAGCCACATTTCGGTTTG+TGG | 0.388053 | 4_4:-71668779 | None:intergenic |
| TTGCTTAGGCTGGTCTTTGT+TGG | 0.389231 | 4_4:-71665811 | None:intergenic |
| GAAGCTCTTTCTTCTTGCTT+AGG | 0.390484 | 4_4:-71665825 | None:intergenic |
| TCAGATATGAACTTGATATC+AGG | 0.394555 | 4_4:+71668361 | Msa0700570:CDS |
| ATTTGGAATTGCTCGATAGT+TGG | 0.404937 | 4_4:-71668944 | None:intergenic |
| TAGCCTCATTAGCCACATTT+CGG | 0.405235 | 4_4:-71668786 | None:intergenic |
| TCAAAGCTGCTGCTCGGCAC+GGG | 0.408584 | 4_4:+71668851 | Msa0700570:CDS |
| ACAGGAATGCAGACAAGAAC+TGG | 0.408767 | 4_4:+71668448 | Msa0700570:CDS |
| GCTCCAGAGAATGAAGATTT+GGG | 0.410466 | 4_4:-71668573 | None:intergenic |
| CACTAGACCTTGCAGATACT+GGG | 0.411215 | 4_4:+71668491 | Msa0700570:CDS |
| GCCGCTGCCGCCGGAGGAAG+CGG | 0.414745 | 4_4:+71665927 | Msa0700570:CDS |
| CGGAGGAAGCGGAGGAGGTC+CGG | 0.415280 | 4_4:+71665938 | Msa0700570:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 4_4:-71668247 | None:intergenic |
| CATTCAAAACTTGAATATAT+AGG | 0.419766 | 4_4:-71669270 | None:intergenic |
| CAGAGTTAAATTTAGTTGGC+AGG | 0.423956 | 4_4:-71668626 | None:intergenic |
| TGTCTTGGGACACTTACTAT+TGG | 0.424179 | 4_4:+71669048 | Msa0700570:three_prime_UTR |
| AGCTTAAGAGCTTGGATTGA+AGG | 0.426622 | 4_4:-71668015 | None:intergenic |
| GTGCCCAAATCTTCATTCTC+TGG | 0.429020 | 4_4:+71668570 | Msa0700570:CDS |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.431681 | 4_4:-71668823 | None:intergenic |
| ATGCCAGAGTTAAATTTAGT+TGG | 0.435087 | 4_4:-71668630 | None:intergenic |
| TCCGCTTCCTCCGGCGGCAG+CGG | 0.440478 | 4_4:-71665928 | None:intergenic |
| ATAACTGTAGCTTAAGAGCT+TGG | 0.443695 | 4_4:-71668023 | None:intergenic |
| GCCGAGCAGCAGCTTTGACT+TGG | 0.452625 | 4_4:-71668846 | None:intergenic |
| TAAGAAAAGGCGATTGCCTC+AGG | 0.456333 | 4_4:+71668210 | Msa0700570:CDS |
| TGGCAGCTTATAATAAGAAA+AGG | 0.461564 | 4_4:+71668197 | Msa0700570:CDS |
| TTACCTGAAGCCTCCTTTGG+TGG | 0.465202 | 4_4:-71668820 | None:intergenic |
| GCTCCACCAAAGGAGGCTTC+AGG | 0.466668 | 4_4:+71668817 | Msa0700570:CDS |
| GCCGCCGGAGGAAGCGGAGG+AGG | 0.467841 | 4_4:+71665933 | Msa0700570:CDS |
| AAAAGCAGATCCTGAGCGTT+GGG | 0.472666 | 4_4:+71667829 | Msa0700570:CDS |
| TGCATTGCGAATTAGTTGTC+TGG | 0.473142 | 4_4:+71669164 | Msa0700570:three_prime_UTR |
| CCCAAGACAGCATGCTCAAA+GGG | 0.473933 | 4_4:-71669034 | None:intergenic |
| TCCTCATCAGCCGCTGCCGC+CGG | 0.477669 | 4_4:+71665918 | Msa0700570:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.478636 | 4_4:+71668171 | Msa0700570:CDS |
| TCACAGTCATAGTCATCCTC+CGG | 0.482739 | 4_4:+71667922 | Msa0700570:CDS |
| CCAAATAGTGAGCAAGAAGA+AGG | 0.485282 | 4_4:+71668961 | Msa0700570:CDS |
| GGATGACTATGACTGTGAAT+AGG | 0.487235 | 4_4:-71667917 | None:intergenic |
| GTCGCCCCAAATAAACTGTC+AGG | 0.490553 | 4_4:+71668693 | Msa0700570:CDS |
| AATTCCAGTCTGAAATTGCT+AGG | 0.494876 | 4_4:-71668277 | None:intergenic |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 4_4:+71667955 | Msa0700570:CDS |
| TGTTGTGCTTGAAATAGGTT+GGG | 0.496826 | 4_4:-71666085 | None:intergenic |
| ACAGTTTATTTGGGGCGACC+TGG | 0.496979 | 4_4:-71668689 | None:intergenic |
| TGAGACAGAAAAGCTTCAGC+TGG | 0.500611 | 4_4:+71668048 | Msa0700570:CDS |
| CTGCCAACTAAATTTAACTC+TGG | 0.500806 | 4_4:+71668627 | Msa0700570:CDS |
| AAACCGAAATGTGGCTAATG+AGG | 0.502956 | 4_4:+71668783 | Msa0700570:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 4_4:-71666114 | None:intergenic |
| TCTTTGTTGGCGTTTGCTGT+TGG | 0.508266 | 4_4:-71665798 | None:intergenic |
| GTCAAAGCTGCTGCTCGGCA+CGG | 0.509514 | 4_4:+71668850 | Msa0700570:CDS |
| TTTGCAGAACTTCTTTGAGA+AGG | 0.509914 | 4_4:+71668117 | Msa0700570:CDS |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.510527 | 4_4:+71668246 | Msa0700570:CDS |
| TCCGGCGGCAGCGGCTGATG+AGG | 0.511352 | 4_4:-71665919 | None:intergenic |
| CACTTTCAAGTCTACAATAC+CGG | 0.512885 | 4_4:-71669223 | None:intergenic |
| TTGTTGTGCTTGAAATAGGT+TGG | 0.514168 | 4_4:-71666086 | None:intergenic |
| CTGCAAGGTCTAGTGTTTCA+GGG | 0.517628 | 4_4:-71668483 | None:intergenic |
| ATAGGAATTCATACTCGGCC+AGG | 0.518045 | 4_4:+71668671 | Msa0700570:CDS |
| TCTTCATTGTCTGAACAGCC+TGG | 0.518791 | 4_4:-71668913 | None:intergenic |
| TTGGCAAACTCCCAACGCTC+AGG | 0.519786 | 4_4:-71667839 | None:intergenic |
| AACAGCCTGGTCTTTCAGTA+AGG | 0.527046 | 4_4:-71668900 | None:intergenic |
| AGTTTATTTGAGATATCTTG+AGG | 0.532987 | 4_4:-71668313 | None:intergenic |
| GCTTAAGAGCTTGGATTGAA+GGG | 0.534276 | 4_4:-71668014 | None:intergenic |
| ATTATAAGCTGCCAAATCCA+TGG | 0.537709 | 4_4:-71668188 | None:intergenic |
| GTTTATTTGAGATATCTTGA+GGG | 0.542382 | 4_4:-71668312 | None:intergenic |
| CTCCAGTAACATCAAGAACA+TGG | 0.542746 | 4_4:+71669002 | Msa0700570:CDS |
| TCATACGTCTTCTGAAGAAA+CGG | 0.543831 | 4_4:-71665963 | None:intergenic |
| GAAAAGCAGATCCTGAGCGT+TGG | 0.545857 | 4_4:+71667828 | Msa0700570:CDS |
| CTGTCTGAAGGAGAACTGAC+AGG | 0.546477 | 4_4:+71668430 | Msa0700570:CDS |
| CAATCCTAGCAATTTCAGAC+TGG | 0.548773 | 4_4:+71668273 | Msa0700570:CDS |
| TCAGCGGCGATTGGATGGCA+TGG | 0.549084 | 4_4:+71668078 | Msa0700570:CDS |
| ATTGTCAACCAAGCTACCTT+CGG | 0.550180 | 4_4:-71668254 | None:intergenic |
| CAAAGCTGCTGCTCGGCACG+GGG | 0.552279 | 4_4:+71668852 | Msa0700570:CDS |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 4_4:+71667923 | Msa0700570:CDS |
| CGGACCTCCTCCGCTTCCTC+CGG | 0.560425 | 4_4:-71665937 | None:intergenic |
| TCCCAAGACAGCATGCTCAA+AGG | 0.561043 | 4_4:-71669035 | None:intergenic |
| GAGTCAAGAGTTAACGCTGA+TGG | 0.561131 | 4_4:+71668733 | Msa0700570:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 4_4:+71667946 | Msa0700570:CDS |
| CTGGAGCCAAGTACTGAAGA+AGG | 0.565718 | 4_4:+71668589 | Msa0700570:CDS |
| TTCTGAAGAATATACACCGC+AGG | 0.566868 | 4_4:+71667891 | Msa0700570:CDS |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 4_4:+71667945 | Msa0700570:CDS |
| GCTGCCGCCGGAGGAAGCGG+AGG | 0.569858 | 4_4:+71665930 | Msa0700570:CDS |
| TCATCAGCCGCTGCCGCCGG+AGG | 0.573945 | 4_4:+71665921 | Msa0700570:CDS |
| AAGTTCATATCTGAGACAGC+TGG | 0.576214 | 4_4:-71668352 | None:intergenic |
| ACCTCCTCCGCTTCCTCCGG+CGG | 0.590329 | 4_4:-71665934 | None:intergenic |
| GATTGGATGGCATGGAGAAG+AGG | 0.590608 | 4_4:+71668086 | Msa0700570:CDS |
| CAATCTAGCTCCACCAAAGG+AGG | 0.593167 | 4_4:+71668810 | Msa0700570:CDS |
| CACGTGCAGCCTGTTGCCGA+AGG | 0.594030 | 4_4:+71668238 | Msa0700570:CDS |
| GCAGCGGCTGATGAGGATTG+TGG | 0.595315 | 4_4:-71665912 | None:intergenic |
| GTCTTCTGAAGAAACGGTGC+CGG | 0.596431 | 4_4:-71665957 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 4_4:-71666124 | None:intergenic |
| TCCAAGTCAAAGCTGCTGCT+CGG | 0.603523 | 4_4:+71668845 | Msa0700570:CDS |
| GTGCAGAATTCATTTCGTAA+CGG | 0.603673 | 4_4:-71665890 | None:intergenic |
| CAAATAGTGAGCAAGAAGAA+GGG | 0.604496 | 4_4:+71668962 | Msa0700570:CDS |
| ATTTCCTGACAGTTTATTTG+GGG | 0.606554 | 4_4:-71668697 | None:intergenic |
| AATAGGTTGGGAGAAGAACA+CGG | 0.613461 | 4_4:-71666073 | None:intergenic |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 4_4:-71667941 | None:intergenic |
| AGAAACGATCTCATCTGTGG+TGG | 0.614963 | 4_4:-71666000 | None:intergenic |
| AGTTTCCACAAACCGAAATG+TGG | 0.624523 | 4_4:+71668774 | Msa0700570:CDS |
| GTGTTTCAGGGGTAAAAGCA+AGG | 0.625370 | 4_4:-71668471 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 4_4:-71666003 | None:intergenic |
| TTGATATCAGGTAGCACACA+GGG | 0.633161 | 4_4:+71668373 | Msa0700570:CDS |
| ACAGGGTTCAAACGAAGATG+AGG | 0.634687 | 4_4:+71668390 | Msa0700570:CDS |
| TGCAAGGTCTAGTGTTTCAG+GGG | 0.637403 | 4_4:-71668482 | None:intergenic |
| ATTCAATAGGAATTCATACT+CGG | 0.642142 | 4_4:+71668666 | Msa0700570:CDS |
| GACTGTGAATAGGTTTCCTG+CGG | 0.644543 | 4_4:-71667907 | None:intergenic |
| AGAACACGGGAGAATTCAGG+AGG | 0.649555 | 4_4:-71666059 | None:intergenic |
| ATAGGTTGGGAGAAGAACAC+GGG | 0.651753 | 4_4:-71666072 | None:intergenic |
| AATTTCCTTACTGAAAGACC+AGG | 0.654469 | 4_4:+71668895 | Msa0700570:CDS |
| AAGATGCCCCAGTATCTGCA+AGG | 0.666464 | 4_4:-71668498 | None:intergenic |
| AGGCTGTTCAGACAATGAAG+AGG | 0.672815 | 4_4:+71668915 | Msa0700570:CDS |
| TATCAATCTAGCTCCACCAA+AGG | 0.674289 | 4_4:+71668807 | Msa0700570:CDS |
| TCTTCAGAAGACGTATGACA+TGG | 0.676071 | 4_4:+71665968 | Msa0700570:CDS |
| CTTGATATCAGGTAGCACAC+AGG | 0.676389 | 4_4:+71668372 | Msa0700570:CDS |
| GGCTGCACGTGATCAACCTG+AGG | 0.691898 | 4_4:-71668226 | None:intergenic |
| TCAGAAGACGTATGACATGG+TGG | 0.698200 | 4_4:+71665971 | Msa0700570:CDS |
| ACTAGACCTTGCAGATACTG+GGG | 0.701020 | 4_4:+71668492 | Msa0700570:CDS |
| ATAGTGAGCAAGAAGAAGGG+CGG | 0.709670 | 4_4:+71668965 | Msa0700570:CDS |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 4_4:-71667938 | None:intergenic |
| GAACACGGGAGAATTCAGGA+GGG | 0.754078 | 4_4:-71666058 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATGTTTTAATTTGTTA+TGG | + | chr4_4:71667773-71667792 | Msa0700570:intron | 10.0% |
| !! | ATTATGAACAAATTTAGATT+TGG | + | chr4_4:71666347-71666366 | Msa0700570:intron | 15.0% |
| !! | ATATCATATTTATATAGTTC+AGG | - | chr4_4:71666805-71666824 | None:intergenic | 15.0% |
| !! | ATAAATATGATATGATGATA+TGG | + | chr4_4:71666812-71666831 | Msa0700570:intron | 15.0% |
| !! | TCAATAAAAATTTACAATAC+AGG | - | chr4_4:71667542-71667561 | None:intergenic | 15.0% |
| !! | ATATTCTTGTAAAGATTTAA+TGG | + | chr4_4:71667691-71667710 | Msa0700570:intron | 15.0% |
| !!! | ATCTTTTATAAATTCTTCAT+TGG | - | chr4_4:71667861-71667880 | None:intergenic | 15.0% |
| !!! | AGATATTATATAGTCTTGTA+CGG | + | chr4_4:71666432-71666451 | Msa0700570:intron | 20.0% |
| !!! | ATTGACACATTTTTGTTTTT+CGG | - | chr4_4:71666871-71666890 | None:intergenic | 20.0% |
| !!! | AATTTAGTCTTTGAAGTATA+TGG | + | chr4_4:71666888-71666907 | Msa0700570:intron | 20.0% |
| !!! | AGCTAACTTTTTTTTTTTCA+TGG | - | chr4_4:71667287-71667306 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr4_4:71667340-71667359 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr4_4:71667339-71667358 | Msa0700570:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr4_4:71667388-71667407 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr4_4:71667389-71667408 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCT+GGG | - | chr4_4:71667427-71667446 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+TGG | - | chr4_4:71667428-71667447 | None:intergenic | 20.0% |
| !!! | ATTTATATGTGCTTTTTATC+AGG | + | chr4_4:71667799-71667818 | Msa0700570:intron | 20.0% |
| !!! | TTTATATGTGCTTTTTATCA+GGG | + | chr4_4:71667800-71667819 | Msa0700570:intron | 20.0% |
| !! | CATTCAAAACTTGAATATAT+AGG | - | chr4_4:71669273-71669292 | None:intergenic | 20.0% |
| !!! | CTATATATTCAAGTTTTGAA+TGG | + | chr4_4:71669271-71669290 | Msa0700570:three_prime_UTR | 20.0% |
| ! | ATAACAAAAGCTTCATTGTT+TGG | + | chr4_4:71666033-71666052 | Msa0700570:CDS | 25.0% |
| ! | AAAAATCTGCTTAGTAAGAT+AGG | + | chr4_4:71666323-71666342 | Msa0700570:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr4_4:71666761-71666780 | None:intergenic | 25.0% |
| !!! | TTGACACATTTTTGTTTTTC+GGG | - | chr4_4:71666870-71666889 | None:intergenic | 25.0% |
| !! | TTATCATGTTTCTATAGTGT+AGG | + | chr4_4:71666993-71667012 | Msa0700570:intron | 25.0% |
| !! | TATCATGTTTCTATAGTGTA+GGG | + | chr4_4:71666994-71667013 | Msa0700570:intron | 25.0% |
| ! | TGGGCAATTATTGAATTTAA+AGG | + | chr4_4:71667199-71667218 | Msa0700570:intron | 25.0% |
| ! | TTGATATCTAACTCTTAGAT+AGG | + | chr4_4:71667573-71667592 | Msa0700570:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr4_4:71667602-71667621 | Msa0700570:intron | 25.0% |
| ! | ATGGCAATGATTAAAAACTA+AGG | + | chr4_4:71667621-71667640 | Msa0700570:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr4_4:71667666-71667685 | None:intergenic | 25.0% |
| !! | GTTTATTTGAGATATCTTGA+GGG | - | chr4_4:71668315-71668334 | None:intergenic | 25.0% |
| !! | AGTTTATTTGAGATATCTTG+AGG | - | chr4_4:71668316-71668335 | None:intergenic | 25.0% |
| ! | ATTCAATAGGAATTCATACT+CGG | + | chr4_4:71668666-71668685 | Msa0700570:CDS | 25.0% |
| ! | AATTTCCTGACAGTTTATTT+GGG | - | chr4_4:71668701-71668720 | None:intergenic | 25.0% |
| GAAATTGTTGTGCTTGAAAT+AGG | - | chr4_4:71666093-71666112 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr4_4:71666141-71666160 | None:intergenic | 30.0% |
| TGGATTTCATTGAGTCTAAT+TGG | + | chr4_4:71666367-71666386 | Msa0700570:intron | 30.0% | |
| TAATTGGAGTTGCTAAATGT+TGG | + | chr4_4:71666383-71666402 | Msa0700570:intron | 30.0% | |
| AATTGGAGTTGCTAAATGTT+GGG | + | chr4_4:71666384-71666403 | Msa0700570:intron | 30.0% | |
| AAAAAAAATTCTGCAGCATC+TGG | + | chr4_4:71666701-71666720 | Msa0700570:intron | 30.0% | |
| !!! | TTGATGGTTTTATTCATGAC+TGG | - | chr4_4:71666745-71666764 | None:intergenic | 30.0% |
| TCTGAATATCACACTATTTC+TGG | + | chr4_4:71666772-71666791 | Msa0700570:intron | 30.0% | |
| TCATCATATCACACTATTTC+TGG | - | chr4_4:71666845-71666864 | None:intergenic | 30.0% | |
| ! | TAGGGACTAAATTTGAGATA+GGG | + | chr4_4:71667012-71667031 | Msa0700570:intron | 30.0% |
| TAATTCAGGGACTAAATTGA+TGG | + | chr4_4:71667038-71667057 | Msa0700570:intron | 30.0% | |
| ! | CTATCTCTTTTACCAAAACA+AGG | - | chr4_4:71667104-71667123 | None:intergenic | 30.0% |
| ATTCAATAATTGCCCATGTA+TGG | - | chr4_4:71667195-71667214 | None:intergenic | 30.0% | |
| !!! | TTTTTTCATGGAAATGTCAC+AGG | - | chr4_4:71667275-71667294 | None:intergenic | 30.0% |
| GGTTATAGTATGCACTTAAT+GGG | - | chr4_4:71667406-71667425 | None:intergenic | 30.0% | |
| TTGATTGATATGATGATACC+CGG | + | chr4_4:71667496-71667515 | Msa0700570:intron | 30.0% | |
| !!! | TGTTTGCCATTTTTGTTTTC+CGG | - | chr4_4:71667518-71667537 | None:intergenic | 30.0% |
| TGGCAGCTTATAATAAGAAA+AGG | + | chr4_4:71668197-71668216 | Msa0700570:CDS | 30.0% | |
| TCAGATATGAACTTGATATC+AGG | + | chr4_4:71668361-71668380 | Msa0700570:CDS | 30.0% | |
| !! | GGCATCTTTTACTTTTAACA+TGG | + | chr4_4:71668513-71668532 | Msa0700570:CDS | 30.0% |
| ATGCCAGAGTTAAATTTAGT+TGG | - | chr4_4:71668633-71668652 | None:intergenic | 30.0% | |
| CTTGTACATTGGAATTCAAT+AGG | + | chr4_4:71668653-71668672 | Msa0700570:CDS | 30.0% | |
| ATTTCCTGACAGTTTATTTG+GGG | - | chr4_4:71668700-71668719 | None:intergenic | 30.0% | |
| CAATTTCCTGACAGTTTATT+TGG | - | chr4_4:71668702-71668721 | None:intergenic | 30.0% | |
| CAAATAAACTGTCAGGAAAT+TGG | + | chr4_4:71668700-71668719 | Msa0700570:CDS | 30.0% | |
| ! | GATGGTAAAGAATCTGAAAT+TGG | + | chr4_4:71668751-71668770 | Msa0700570:CDS | 30.0% |
| ! | GTAGACATTCAAGCTTTTAA+TGG | + | chr4_4:71669194-71669213 | Msa0700570:three_prime_UTR | 30.0% |
| ! | AAGCTTTTAATGGTTTTCAC+CGG | + | chr4_4:71669204-71669223 | Msa0700570:three_prime_UTR | 30.0% |
| !!! | AAGTTTTGAATGGTTTTCAC+AGG | + | chr4_4:71669281-71669300 | Msa0700570:three_prime_UTR | 30.0% |
| TTAAAAAGTCTCTGACTATG+CGG | + | chr4_4:71669314-71669333 | Msa0700570:three_prime_UTR | 30.0% | |
| GTGCAGAATTCATTTCGTAA+CGG | - | chr4_4:71665893-71665912 | None:intergenic | 35.0% | |
| ! | TCATACGTCTTCTGAAGAAA+CGG | - | chr4_4:71665966-71665985 | None:intergenic | 35.0% |
| TGTTGTGCTTGAAATAGGTT+GGG | - | chr4_4:71666088-71666107 | None:intergenic | 35.0% | |
| TTGTTGTGCTTGAAATAGGT+TGG | - | chr4_4:71666089-71666108 | None:intergenic | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr4_4:71666127-71666146 | None:intergenic | 35.0% |
| CTTAGTCGAGTTTCAATTAG+TGG | + | chr4_4:71666261-71666280 | Msa0700570:intron | 35.0% | |
| ATCCATCTTTCATCATTCTC+AGG | - | chr4_4:71666411-71666430 | None:intergenic | 35.0% | |
| ACACTGAATTATGTCACTGT+CGG | - | chr4_4:71666528-71666547 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+TGG | - | chr4_4:71666619-71666638 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+CGG | + | chr4_4:71666620-71666639 | Msa0700570:intron | 35.0% |
| !! | TAGGTCTTAATTTTCGGTGT+GGG | + | chr4_4:71666626-71666645 | Msa0700570:intron | 35.0% |
| ! | GTGACTTGTGACTAAATTGA+CGG | + | chr4_4:71666947-71666966 | Msa0700570:intron | 35.0% |
| ! | TGACTTGTGACTAAATTGAC+GGG | + | chr4_4:71666948-71666967 | Msa0700570:intron | 35.0% |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr4_4:71667011-71667030 | Msa0700570:intron | 35.0% |
| TTGAGATAGGGTGATAATTC+AGG | + | chr4_4:71667024-71667043 | Msa0700570:intron | 35.0% | |
| TGAGATAGGGTGATAATTCA+GGG | + | chr4_4:71667025-71667044 | Msa0700570:intron | 35.0% | |
| GGGTTATAGTATGCACTTAA+TGG | - | chr4_4:71667407-71667426 | None:intergenic | 35.0% | |
| TGATACCCGGAAAACAAAAA+TGG | + | chr4_4:71667509-71667528 | Msa0700570:intron | 35.0% | |
| !!! | GTTTGCCATTTTTGTTTTCC+GGG | - | chr4_4:71667517-71667536 | None:intergenic | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr4_4:71667654-71667673 | None:intergenic | 35.0% | |
| AATCGTTCAAAGAAGTTTGC+AGG | + | chr4_4:71667716-71667735 | Msa0700570:intron | 35.0% | |
| AAAGAAGTTTGCAGGTCTTA+TGG | + | chr4_4:71667724-71667743 | Msa0700570:intron | 35.0% | |
| ATAACTGTAGCTTAAGAGCT+TGG | - | chr4_4:71668026-71668045 | None:intergenic | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | + | chr4_4:71668117-71668136 | Msa0700570:CDS | 35.0% |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr4_4:71668177-71668196 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr4_4:71668177-71668196 | Msa0700570:CDS | 35.0% | |
| ATTATAAGCTGCCAAATCCA+TGG | - | chr4_4:71668191-71668210 | None:intergenic | 35.0% | |
| ! | AATTCCAGTCTGAAATTGCT+AGG | - | chr4_4:71668280-71668299 | None:intergenic | 35.0% |
| AGCAATTTCAGACTGGAATT+TGG | + | chr4_4:71668280-71668299 | Msa0700570:CDS | 35.0% | |
| GCAATTTCAGACTGGAATTT+GGG | + | chr4_4:71668281-71668300 | Msa0700570:CDS | 35.0% | |
| CAGAGTTAAATTTAGTTGGC+AGG | - | chr4_4:71668629-71668648 | None:intergenic | 35.0% | |
| CTGCCAACTAAATTTAACTC+TGG | + | chr4_4:71668627-71668646 | Msa0700570:CDS | 35.0% | |
| AATTTCCTTACTGAAAGACC+AGG | + | chr4_4:71668895-71668914 | Msa0700570:CDS | 35.0% | |
| ! | ATTTGGAATTGCTCGATAGT+TGG | - | chr4_4:71668947-71668966 | None:intergenic | 35.0% |
| CAAATAGTGAGCAAGAAGAA+GGG | + | chr4_4:71668962-71668981 | Msa0700570:CDS | 35.0% | |
| ATCCATGTTCTTGATGTTAC+TGG | - | chr4_4:71669007-71669026 | None:intergenic | 35.0% | |
| ! | CACTTTCAAGTCTACAATAC+CGG | - | chr4_4:71669226-71669245 | None:intergenic | 35.0% |
| GAAGCTCTTTCTTCTTGCTT+AGG | - | chr4_4:71665828-71665847 | None:intergenic | 40.0% | |
| TCTTCAGAAGACGTATGACA+TGG | + | chr4_4:71665968-71665987 | Msa0700570:CDS | 40.0% | |
| ! | AATAGGTTGGGAGAAGAACA+CGG | - | chr4_4:71666076-71666095 | None:intergenic | 40.0% |
| GACCTGAGAATGATGAAAGA+TGG | + | chr4_4:71666406-71666425 | Msa0700570:intron | 40.0% | |
| ! | TAAGGTGTTTGTGTTGTGTC+CGG | - | chr4_4:71666490-71666509 | None:intergenic | 40.0% |
| AATTATGTCACTGTCGGTGT+CGG | - | chr4_4:71666522-71666541 | None:intergenic | 40.0% | |
| ! | CATACGTGTCATTGTTGTGT+CGG | + | chr4_4:71666551-71666570 | Msa0700570:intron | 40.0% |
| ! | GTAGGTCTTAATTTTCGGTG+TGG | + | chr4_4:71666625-71666644 | Msa0700570:intron | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr4_4:71666651-71666670 | Msa0700570:intron | 40.0% |
| CAAAACAAGGACGAGTTGTA+TGG | - | chr4_4:71667091-71667110 | None:intergenic | 40.0% | |
| !! | CATACAACTCGTCCTTGTTT+TGG | + | chr4_4:71667089-71667108 | Msa0700570:intron | 40.0% |
| ! | TGACTGACACGGGAAATTTT+GGG | - | chr4_4:71667230-71667249 | None:intergenic | 40.0% |
| ! | ATGACTGACACGGGAAATTT+TGG | - | chr4_4:71667231-71667250 | None:intergenic | 40.0% |
| TCTTTCACATGGCTAACCTA+TGG | + | chr4_4:71667350-71667369 | Msa0700570:intron | 40.0% | |
| CTTTCACATGGCTAACCTAT+GGG | + | chr4_4:71667351-71667370 | Msa0700570:intron | 40.0% | |
| ! | TTCTGAAGAATATACACCGC+AGG | + | chr4_4:71667891-71667910 | Msa0700570:CDS | 40.0% |
| GGATGACTATGACTGTGAAT+AGG | - | chr4_4:71667920-71667939 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr4_4:71667946-71667965 | Msa0700570:CDS | 40.0% | |
| GCTTAAGAGCTTGGATTGAA+GGG | - | chr4_4:71668017-71668036 | None:intergenic | 40.0% | |
| AGCTTAAGAGCTTGGATTGA+AGG | - | chr4_4:71668018-71668037 | None:intergenic | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr4_4:71668062-71668081 | Msa0700570:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr4_4:71668176-71668195 | None:intergenic | 40.0% |
| ATTGTCAACCAAGCTACCTT+CGG | - | chr4_4:71668257-71668276 | None:intergenic | 40.0% | |
| CAATCCTAGCAATTTCAGAC+TGG | + | chr4_4:71668273-71668292 | Msa0700570:CDS | 40.0% | |
| ! | AAGTTCATATCTGAGACAGC+TGG | - | chr4_4:71668355-71668374 | None:intergenic | 40.0% |
| TTGATATCAGGTAGCACACA+GGG | + | chr4_4:71668373-71668392 | Msa0700570:CDS | 40.0% | |
| ! | CTTCAGACAGATTTTTCTGC+AGG | - | chr4_4:71668420-71668439 | None:intergenic | 40.0% |
| CTGCAGAAAAATCTGTCTGA+AGG | + | chr4_4:71668418-71668437 | Msa0700570:CDS | 40.0% | |
| GCTCCAGAGAATGAAGATTT+GGG | - | chr4_4:71668576-71668595 | None:intergenic | 40.0% | |
| CTATCACCTTCTTCAGTACT+TGG | - | chr4_4:71668598-71668617 | None:intergenic | 40.0% | |
| AACTCTGGCATCTTGTACAT+TGG | + | chr4_4:71668642-71668661 | Msa0700570:CDS | 40.0% | |
| CTGTCAGGAAATTGGCAATT+TGG | + | chr4_4:71668708-71668727 | Msa0700570:CDS | 40.0% | |
| AGTTTCCACAAACCGAAATG+TGG | + | chr4_4:71668774-71668793 | Msa0700570:CDS | 40.0% | |
| ! | ATTAGCCACATTTCGGTTTG+TGG | - | chr4_4:71668782-71668801 | None:intergenic | 40.0% |
| AAACCGAAATGTGGCTAATG+AGG | + | chr4_4:71668783-71668802 | Msa0700570:CDS | 40.0% | |
| TAGCCTCATTAGCCACATTT+CGG | - | chr4_4:71668789-71668808 | None:intergenic | 40.0% | |
| ! | TATCAATCTAGCTCCACCAA+AGG | + | chr4_4:71668807-71668826 | Msa0700570:CDS | 40.0% |
| CCTTCTTCTTGCTCACTATT+TGG | - | chr4_4:71668964-71668983 | None:intergenic | 40.0% | |
| CCAAATAGTGAGCAAGAAGA+AGG | + | chr4_4:71668961-71668980 | Msa0700570:CDS | 40.0% | |
| CTCCAGTAACATCAAGAACA+TGG | + | chr4_4:71669002-71669021 | Msa0700570:CDS | 40.0% | |
| TGTCTTGGGACACTTACTAT+TGG | + | chr4_4:71669048-71669067 | Msa0700570:three_prime_UTR | 40.0% | |
| TGCATTGCGAATTAGTTGTC+TGG | + | chr4_4:71669164-71669183 | Msa0700570:three_prime_UTR | 40.0% | |
| !! | TCTTTGTTGGCGTTTGCTGT+TGG | - | chr4_4:71665801-71665820 | None:intergenic | 45.0% |
| !! | TTGCTTAGGCTGGTCTTTGT+TGG | - | chr4_4:71665814-71665833 | None:intergenic | 45.0% |
| CTCTTTCTTCTTGCTTAGGC+TGG | - | chr4_4:71665824-71665843 | None:intergenic | 45.0% | |
| TCAGAAGACGTATGACATGG+TGG | + | chr4_4:71665971-71665990 | Msa0700570:CDS | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | - | chr4_4:71666003-71666022 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | - | chr4_4:71666006-71666025 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | + | chr4_4:71666003-71666022 | Msa0700570:CDS | 45.0% | |
| AGAAGAACACGGGAGAATTC+AGG | - | chr4_4:71666065-71666084 | None:intergenic | 45.0% | |
| ! | ATAGGTTGGGAGAAGAACAC+GGG | - | chr4_4:71666075-71666094 | None:intergenic | 45.0% |
| CGAAGCACAAACATAGACAC+CGG | + | chr4_4:71666468-71666487 | Msa0700570:intron | 45.0% | |
| TACGAAGCATGGACAATCCT+CGG | - | chr4_4:71666608-71666627 | None:intergenic | 45.0% | |
| ATTCTGCAGCATCTGGATCT+TGG | + | chr4_4:71666708-71666727 | Msa0700570:intron | 45.0% | |
| CAGCATCTGGATCTTGGTAA+TGG | + | chr4_4:71666714-71666733 | Msa0700570:intron | 45.0% | |
| GTTCGCGAATGTGTCATGAA+CGG | + | chr4_4:71667141-71667160 | Msa0700570:intron | 45.0% | |
| AACCTGCGTCTAACCATACA+TGG | + | chr4_4:71667179-71667198 | Msa0700570:intron | 45.0% | |
| ACCTGCGTCTAACCATACAT+GGG | + | chr4_4:71667180-71667199 | Msa0700570:intron | 45.0% | |
| AGACACATCATGACTGACAC+GGG | - | chr4_4:71667240-71667259 | None:intergenic | 45.0% | |
| CAGACACATCATGACTGACA+CGG | - | chr4_4:71667241-71667260 | None:intergenic | 45.0% | |
| !! | AGGGTTTCAAAAGCACCCAT+AGG | - | chr4_4:71667369-71667388 | None:intergenic | 45.0% |
| ATGTCTACGATGCAGAAGAC+AGG | - | chr4_4:71667452-71667471 | None:intergenic | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | + | chr4_4:71667463-71667482 | Msa0700570:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | - | chr4_4:71667651-71667670 | None:intergenic | 45.0% | |
| AAAAGCAGATCCTGAGCGTT+GGG | + | chr4_4:71667829-71667848 | Msa0700570:CDS | 45.0% | |
| GACTGTGAATAGGTTTCCTG+CGG | - | chr4_4:71667910-71667929 | None:intergenic | 45.0% | |
| TCACAGTCATAGTCATCCTC+CGG | + | chr4_4:71667922-71667941 | Msa0700570:CDS | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr4_4:71667945-71667964 | Msa0700570:CDS | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | + | chr4_4:71668048-71668067 | Msa0700570:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr4_4:71668126-71668145 | Msa0700570:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr4_4:71668171-71668190 | Msa0700570:CDS | 45.0% | |
| TAAGAAAAGGCGATTGCCTC+AGG | + | chr4_4:71668210-71668229 | Msa0700570:CDS | 45.0% | |
| CTTGATATCAGGTAGCACAC+AGG | + | chr4_4:71668372-71668391 | Msa0700570:CDS | 45.0% | |
| ACAGGGTTCAAACGAAGATG+AGG | + | chr4_4:71668390-71668409 | Msa0700570:CDS | 45.0% | |
| ACAGGAATGCAGACAAGAAC+TGG | + | chr4_4:71668448-71668467 | Msa0700570:CDS | 45.0% | |
| GTGTTTCAGGGGTAAAAGCA+AGG | - | chr4_4:71668474-71668493 | None:intergenic | 45.0% | |
| TGCAAGGTCTAGTGTTTCAG+GGG | - | chr4_4:71668485-71668504 | None:intergenic | 45.0% | |
| CTGCAAGGTCTAGTGTTTCA+GGG | - | chr4_4:71668486-71668505 | None:intergenic | 45.0% | |
| TCTGCAAGGTCTAGTGTTTC+AGG | - | chr4_4:71668487-71668506 | None:intergenic | 45.0% | |
| ACACTAGACCTTGCAGATAC+TGG | + | chr4_4:71668490-71668509 | Msa0700570:CDS | 45.0% | |
| CACTAGACCTTGCAGATACT+GGG | + | chr4_4:71668491-71668510 | Msa0700570:CDS | 45.0% | |
| ACTAGACCTTGCAGATACTG+GGG | + | chr4_4:71668492-71668511 | Msa0700570:CDS | 45.0% | |
| GTGCCCAAATCTTCATTCTC+TGG | + | chr4_4:71668570-71668589 | Msa0700570:CDS | 45.0% | |
| GGCTCCAGAGAATGAAGATT+TGG | - | chr4_4:71668577-71668596 | None:intergenic | 45.0% | |
| ATAGGAATTCATACTCGGCC+AGG | + | chr4_4:71668671-71668690 | Msa0700570:CDS | 45.0% | |
| GAGTCAAGAGTTAACGCTGA+TGG | + | chr4_4:71668733-71668752 | Msa0700570:CDS | 45.0% | |
| ! | ACGGGGTGAATGATGTGTTT+TGG | + | chr4_4:71668869-71668888 | Msa0700570:CDS | 45.0% |
| ! | CGGGGTGAATGATGTGTTTT+GGG | + | chr4_4:71668870-71668889 | Msa0700570:CDS | 45.0% |
| ! | AACAGCCTGGTCTTTCAGTA+AGG | - | chr4_4:71668903-71668922 | None:intergenic | 45.0% |
| TCTTCATTGTCTGAACAGCC+TGG | - | chr4_4:71668916-71668935 | None:intergenic | 45.0% | |
| AGGCTGTTCAGACAATGAAG+AGG | + | chr4_4:71668915-71668934 | Msa0700570:CDS | 45.0% | |
| ATAGTGAGCAAGAAGAAGGG+CGG | + | chr4_4:71668965-71668984 | Msa0700570:CDS | 45.0% | |
| ! | GTCTTCTGAAGAAACGGTGC+CGG | - | chr4_4:71665960-71665979 | None:intergenic | 50.0% |
| GAACACGGGAGAATTCAGGA+GGG | - | chr4_4:71666061-71666080 | None:intergenic | 50.0% | |
| AGAACACGGGAGAATTCAGG+AGG | - | chr4_4:71666062-71666081 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr4_4:71666117-71666136 | None:intergenic | 50.0% |
| GATTAGGTGTGTCCTGACGT+CGG | - | chr4_4:71666586-71666605 | None:intergenic | 50.0% | |
| GCATGGACAATCCTCGGATT+AGG | - | chr4_4:71666602-71666621 | None:intergenic | 50.0% | |
| GAGGATTGTCCATGCTTCGT+AGG | + | chr4_4:71666607-71666626 | Msa0700570:intron | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr4_4:71666638-71666657 | Msa0700570:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr4_4:71666642-71666661 | Msa0700570:intron | 50.0% | |
| ! | GGTTAGACGCAGGTTCTAAC+TGG | - | chr4_4:71667174-71667193 | None:intergenic | 50.0% |
| CTACGATGCAGAAGACAGGT+AGG | - | chr4_4:71667448-71667467 | None:intergenic | 50.0% | |
| GAAAAGCAGATCCTGAGCGT+TGG | + | chr4_4:71667828-71667847 | Msa0700570:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr4_4:71667923-71667942 | Msa0700570:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr4_4:71667944-71667963 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr4_4:71667955-71667974 | Msa0700570:CDS | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | + | chr4_4:71668069-71668088 | Msa0700570:CDS | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+TGG | + | chr4_4:71668073-71668092 | Msa0700570:CDS | 50.0% |
| GATTGGATGGCATGGAGAAG+AGG | + | chr4_4:71668086-71668105 | Msa0700570:CDS | 50.0% | |
| CTGTCTGAAGGAGAACTGAC+AGG | + | chr4_4:71668430-71668449 | Msa0700570:CDS | 50.0% | |
| AAGATGCCCCAGTATCTGCA+AGG | - | chr4_4:71668501-71668520 | None:intergenic | 50.0% | |
| !! | CTGGAGCCAAGTACTGAAGA+AGG | + | chr4_4:71668589-71668608 | Msa0700570:CDS | 50.0% |
| ! | ACAGTTTATTTGGGGCGACC+TGG | - | chr4_4:71668692-71668711 | None:intergenic | 50.0% |
| GTCGCCCCAAATAAACTGTC+AGG | + | chr4_4:71668693-71668712 | Msa0700570:CDS | 50.0% | |
| ! | CAATCTAGCTCCACCAAAGG+AGG | + | chr4_4:71668810-71668829 | Msa0700570:CDS | 50.0% |
| TTACCTGAAGCCTCCTTTGG+TGG | - | chr4_4:71668823-71668842 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr4_4:71668826-71668845 | None:intergenic | 50.0% | |
| TCCAAGTCAAAGCTGCTGCT+CGG | + | chr4_4:71668845-71668864 | Msa0700570:CDS | 50.0% | |
| ACCCTTTGAGCATGCTGTCT+TGG | + | chr4_4:71669033-71669052 | Msa0700570:exon | 50.0% | |
| CCCAAGACAGCATGCTCAAA+GGG | - | chr4_4:71669037-71669056 | None:intergenic | 50.0% | |
| CCCTTTGAGCATGCTGTCTT+GGG | + | chr4_4:71669034-71669053 | Msa0700570:exon | 50.0% | |
| TCCCAAGACAGCATGCTCAA+AGG | - | chr4_4:71669038-71669057 | None:intergenic | 50.0% | |
| GTCAGGACACACCTAATCCG+AGG | + | chr4_4:71666588-71666607 | Msa0700570:intron | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr4_4:71666641-71666660 | Msa0700570:intron | 55.0% | |
| GCCCATGTATGGTTAGACGC+AGG | - | chr4_4:71667184-71667203 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | - | chr4_4:71667647-71667666 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | - | chr4_4:71667648-71667667 | None:intergenic | 55.0% | |
| TTGGCAAACTCCCAACGCTC+AGG | - | chr4_4:71667842-71667861 | None:intergenic | 55.0% | |
| TGCTCCAATGCTGCCCTTTC+TGG | - | chr4_4:71667962-71667981 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr4_4:71668250-71668269 | None:intergenic | 55.0% | |
| GAAGAAGGGCGGTCAGTTCA+TGG | + | chr4_4:71668976-71668995 | Msa0700570:CDS | 55.0% | |
| GCAGCGGCTGATGAGGATTG+TGG | - | chr4_4:71665915-71665934 | None:intergenic | 60.0% | |
| !! | GTCACTGTCGGTGTCGGTGT+CGG | - | chr4_4:71666516-71666535 | None:intergenic | 60.0% |
| GGATCTACAGCAGAACCCGG+AGG | - | chr4_4:71667941-71667960 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | + | chr4_4:71668078-71668097 | Msa0700570:CDS | 60.0% | |
| GGCTGCACGTGATCAACCTG+AGG | - | chr4_4:71668229-71668248 | None:intergenic | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr4_4:71668246-71668265 | Msa0700570:CDS | 60.0% | |
| GCTCCACCAAAGGAGGCTTC+AGG | + | chr4_4:71668817-71668836 | Msa0700570:CDS | 60.0% | |
| ! | GCCGAGCAGCAGCTTTGACT+TGG | - | chr4_4:71668849-71668868 | None:intergenic | 60.0% |
| GTCAAAGCTGCTGCTCGGCA+CGG | + | chr4_4:71668850-71668869 | Msa0700570:CDS | 60.0% | |
| TCAAAGCTGCTGCTCGGCAC+GGG | + | chr4_4:71668851-71668870 | Msa0700570:CDS | 60.0% | |
| !! | CGGTGTCGGTGTCGGCGATA+AGG | - | chr4_4:71666508-71666527 | None:intergenic | 65.0% |
| ! | CGGTGTCAGACACCGACGTC+AGG | + | chr4_4:71666571-71666590 | Msa0700570:intron | 65.0% |
| CACGTGCAGCCTGTTGCCGA+AGG | + | chr4_4:71668238-71668257 | Msa0700570:CDS | 65.0% | |
| CAAAGCTGCTGCTCGGCACG+GGG | + | chr4_4:71668852-71668871 | Msa0700570:CDS | 65.0% | |
| TCCTCATCAGCCGCTGCCGC+CGG | + | chr4_4:71665918-71665937 | Msa0700570:CDS | 70.0% | |
| ACCTCCTCCGCTTCCTCCGG+CGG | - | chr4_4:71665937-71665956 | None:intergenic | 70.0% | |
| CGGACCTCCTCCGCTTCCTC+CGG | - | chr4_4:71665940-71665959 | None:intergenic | 70.0% | |
| CGGAGGAAGCGGAGGAGGTC+CGG | + | chr4_4:71665938-71665957 | Msa0700570:CDS | 70.0% | |
| TCCGGCGGCAGCGGCTGATG+AGG | - | chr4_4:71665922-71665941 | None:intergenic | 75.0% | |
| TCATCAGCCGCTGCCGCCGG+AGG | + | chr4_4:71665921-71665940 | Msa0700570:CDS | 75.0% | |
| TCCGCTTCCTCCGGCGGCAG+CGG | - | chr4_4:71665931-71665950 | None:intergenic | 75.0% | |
| ! | GCCGCTGCCGCCGGAGGAAG+CGG | + | chr4_4:71665927-71665946 | Msa0700570:CDS | 80.0% |
| ! | GCTGCCGCCGGAGGAAGCGG+AGG | + | chr4_4:71665930-71665949 | Msa0700570:CDS | 80.0% |
| ! | GCCGCCGGAGGAAGCGGAGG+AGG | + | chr4_4:71665933-71665952 | Msa0700570:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 71665796 | 71669341 | 71665796 | ID=Msa0700570;Name=Msa0700570 |
| chr4_4 | mRNA | 71665796 | 71669341 | 71665796 | ID=Msa0700570-mRNA-1;Parent=Msa0700570;Name=Msa0700570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=104|1|1|1|1|1|2|300|487 |
| chr4_4 | exon | 71665796 | 71666142 | 71665796 | ID=Msa0700570-mRNA-1:exon:21817;Parent=Msa0700570-mRNA-1 |
| chr4_4 | exon | 71667821 | 71669341 | 71667821 | ID=Msa0700570-mRNA-1:exon:21818;Parent=Msa0700570-mRNA-1 |
| chr4_4 | five_prime_UTR | 71665796 | 71665899 | 71665796 | ID=Msa0700570-mRNA-1:five_prime_utr;Parent=Msa0700570-mRNA-1 |
| chr4_4 | CDS | 71665900 | 71666142 | 71665900 | ID=Msa0700570-mRNA-1:cds;Parent=Msa0700570-mRNA-1 |
| chr4_4 | CDS | 71667821 | 71669041 | 71667821 | ID=Msa0700570-mRNA-1:cds;Parent=Msa0700570-mRNA-1 |
| chr4_4 | three_prime_UTR | 71669042 | 71669341 | 71669042 | ID=Msa0700570-mRNA-1:three_prime_utr;Parent=Msa0700570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
