Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564090 | XP_003629611.1 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564090 | sp|Q94BZ5|HSFA5_ARATH | 51.107 | 497 | 202 | 10 | 1 | 487 | 1 | 466 | 2.89e-144 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564090 | G7LH28 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0564090 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0409300 | Msa0564090 | 0.818187 | 2.233827e-52 | -8.615850e-47 |
| Msa0301690 | Msa0564090 | 0.803486 | 3.407563e-49 | -8.615850e-47 |
| Msa0503220 | Msa0564090 | 0.814583 | 1.431106e-51 | -8.615850e-47 |
| Msa0564090 | Msa0700570 | 0.886810 | 2.472863e-72 | -8.615850e-47 |
| Msa0564090 | Msa1172980 | 0.803556 | 3.294734e-49 | -8.615850e-47 |
| Msa0564090 | Msa1394370 | 0.812820 | 3.498356e-51 | -8.615850e-47 |
| Msa0564090 | Msa1395390 | 0.815729 | 7.963763e-52 | -8.615850e-47 |
| Msa0564090 | Msa1408580 | 0.858484 | 7.983986e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564090 | MtrunA17_Chr8g0378061 | 98.768 | 487 | 6 | 0 | 1 | 487 | 1 | 487 | 0.0 | 999 |
| Msa0564090 | MtrunA17_Chr2g0330841 | 73.037 | 382 | 96 | 2 | 64 | 444 | 29 | 404 | 0.0 | 559 |
| Msa0564090 | MtrunA17_Chr6g0467041 | 85.616 | 292 | 42 | 0 | 1 | 292 | 1 | 292 | 0.0 | 516 |
| Msa0564090 | MtrunA17_Chr6g0467041 | 75.556 | 45 | 11 | 0 | 412 | 456 | 284 | 328 | 1.02e-14 | 75.1 |
| Msa0564090 | MtrunA17_Chr2g0330821 | 68.792 | 298 | 73 | 3 | 1 | 297 | 60 | 338 | 1.81e-137 | 400 |
| Msa0564090 | MtrunA17_Chr5g0410881 | 50.935 | 214 | 91 | 4 | 19 | 218 | 29 | 242 | 8.46e-65 | 218 |
| Msa0564090 | MtrunA17_Chr8g0379701 | 51.905 | 210 | 90 | 4 | 13 | 217 | 4 | 207 | 2.80e-63 | 211 |
| Msa0564090 | MtrunA17_Chr4g0039891 | 46.860 | 207 | 98 | 3 | 22 | 216 | 12 | 218 | 5.38e-56 | 194 |
| Msa0564090 | MtrunA17_Chr1g0204741 | 46.117 | 206 | 99 | 5 | 19 | 215 | 37 | 239 | 2.58e-51 | 177 |
| Msa0564090 | MtrunA17_Chr7g0260331 | 46.411 | 209 | 102 | 4 | 19 | 217 | 46 | 254 | 3.86e-51 | 177 |
| Msa0564090 | MtrunA17_Chr6g0470901 | 80.000 | 105 | 17 | 1 | 220 | 324 | 49 | 149 | 5.11e-49 | 165 |
| Msa0564090 | MtrunA17_Chr3g0135831 | 44.390 | 205 | 104 | 5 | 19 | 216 | 43 | 244 | 7.81e-49 | 172 |
| Msa0564090 | MtrunA17_Chr4g0071051 | 46.774 | 186 | 95 | 2 | 19 | 203 | 98 | 280 | 8.13e-49 | 173 |
| Msa0564090 | MtrunA17_Chr1g0185131 | 44.633 | 177 | 90 | 2 | 20 | 195 | 30 | 199 | 1.19e-46 | 165 |
| Msa0564090 | MtrunA17_Chr8g0392001 | 48.969 | 194 | 86 | 6 | 21 | 201 | 21 | 214 | 2.44e-44 | 159 |
| Msa0564090 | MtrunA17_Chr3g0134031 | 72.340 | 94 | 26 | 0 | 20 | 113 | 22 | 115 | 1.33e-43 | 157 |
| Msa0564090 | MtrunA17_Chr2g0284481 | 62.037 | 108 | 41 | 0 | 12 | 119 | 5 | 112 | 3.20e-42 | 154 |
| Msa0564090 | MtrunA17_Chr5g0397881 | 61.111 | 108 | 42 | 0 | 6 | 113 | 8 | 115 | 5.41e-42 | 153 |
| Msa0564090 | MtrunA17_Chr5g0402291 | 61.538 | 104 | 40 | 0 | 19 | 122 | 6 | 109 | 2.55e-41 | 149 |
| Msa0564090 | MtrunA17_Chr5g0441531 | 69.149 | 94 | 29 | 0 | 20 | 113 | 23 | 116 | 4.06e-41 | 147 |
| Msa0564090 | MtrunA17_Chr6g0485571 | 39.286 | 224 | 103 | 4 | 21 | 230 | 10 | 214 | 8.81e-41 | 149 |
| Msa0564090 | MtrunA17_Chr6g0472421 | 63.830 | 94 | 34 | 0 | 20 | 113 | 31 | 124 | 4.03e-38 | 142 |
| Msa0564090 | MtrunA17_Chr1g0203601 | 60.417 | 96 | 38 | 0 | 20 | 115 | 16 | 111 | 2.81e-37 | 139 |
| Msa0564090 | MtrunA17_Chr7g0257331 | 51.327 | 113 | 55 | 0 | 1 | 113 | 1 | 113 | 5.36e-36 | 133 |
| Msa0564090 | MtrunA17_Chr4g0047421 | 57.143 | 98 | 38 | 1 | 20 | 113 | 31 | 128 | 2.37e-33 | 125 |
| Msa0564090 | MtrunA17_Chr8g0375041 | 58.065 | 93 | 39 | 0 | 21 | 113 | 8 | 100 | 4.33e-32 | 123 |
| Msa0564090 | MtrunA17_Chr1g0179321 | 65.000 | 60 | 21 | 0 | 22 | 81 | 49 | 108 | 1.39e-23 | 95.5 |
| Msa0564090 | MtrunA17_Chr4g0023771 | 67.213 | 61 | 19 | 1 | 22 | 81 | 15 | 75 | 4.91e-21 | 88.2 |
| Msa0564090 | MtrunA17_Chr1g0179311 | 27.239 | 268 | 176 | 9 | 61 | 323 | 1 | 254 | 2.03e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0564090 | AT4G13980.1 | 51.107 | 497 | 202 | 10 | 1 | 487 | 1 | 466 | 2.94e-145 | 424 |
| Msa0564090 | AT1G32330.2 | 47.660 | 235 | 104 | 5 | 1 | 216 | 16 | 250 | 6.85e-61 | 207 |
| Msa0564090 | AT1G32330.1 | 47.660 | 235 | 104 | 5 | 1 | 216 | 16 | 250 | 7.73e-61 | 207 |
| Msa0564090 | AT4G17750.1 | 46.352 | 233 | 104 | 4 | 5 | 216 | 35 | 267 | 4.30e-60 | 205 |
| Msa0564090 | AT5G16820.1 | 50.000 | 210 | 90 | 5 | 22 | 217 | 27 | 235 | 2.66e-58 | 200 |
| Msa0564090 | AT5G16820.2 | 50.000 | 210 | 90 | 5 | 22 | 217 | 27 | 235 | 2.66e-58 | 200 |
| Msa0564090 | AT3G02990.1 | 46.119 | 219 | 105 | 4 | 22 | 228 | 23 | 240 | 1.55e-57 | 197 |
| Msa0564090 | AT4G18880.1 | 51.643 | 213 | 93 | 3 | 14 | 220 | 7 | 215 | 1.47e-55 | 191 |
| Msa0564090 | AT3G22830.1 | 43.662 | 213 | 106 | 4 | 19 | 217 | 58 | 270 | 3.80e-50 | 176 |
| Msa0564090 | AT2G26150.1 | 43.243 | 222 | 118 | 4 | 19 | 232 | 41 | 262 | 7.35e-50 | 174 |
| Msa0564090 | AT2G26150.4 | 43.243 | 222 | 118 | 4 | 19 | 232 | 41 | 262 | 7.35e-50 | 174 |
| Msa0564090 | AT5G45710.3 | 46.296 | 216 | 101 | 4 | 14 | 224 | 6 | 211 | 1.82e-49 | 173 |
| Msa0564090 | AT5G45710.1 | 46.296 | 216 | 101 | 4 | 14 | 224 | 6 | 211 | 1.82e-49 | 173 |
| Msa0564090 | AT3G51910.1 | 43.478 | 207 | 101 | 4 | 14 | 215 | 21 | 216 | 9.20e-48 | 166 |
| Msa0564090 | AT5G43840.1 | 45.745 | 188 | 90 | 3 | 20 | 205 | 17 | 194 | 8.53e-46 | 161 |
| Msa0564090 | AT5G03720.2 | 45.556 | 180 | 95 | 2 | 22 | 198 | 55 | 234 | 4.65e-45 | 163 |
| Msa0564090 | AT5G03720.1 | 45.556 | 180 | 95 | 2 | 22 | 198 | 55 | 234 | 4.65e-45 | 163 |
| Msa0564090 | AT1G46264.1 | 60.504 | 119 | 37 | 1 | 14 | 122 | 26 | 144 | 5.92e-44 | 158 |
| Msa0564090 | AT1G67970.1 | 45.550 | 191 | 91 | 5 | 21 | 201 | 18 | 205 | 1.52e-43 | 158 |
| Msa0564090 | AT3G24520.1 | 44.809 | 183 | 78 | 4 | 21 | 202 | 16 | 176 | 5.20e-43 | 155 |
| Msa0564090 | AT3G63350.1 | 37.447 | 235 | 132 | 3 | 5 | 227 | 3 | 234 | 1.69e-42 | 152 |
| Msa0564090 | AT5G54070.1 | 42.029 | 207 | 109 | 3 | 18 | 218 | 67 | 268 | 2.12e-42 | 154 |
| Msa0564090 | AT5G62020.1 | 52.101 | 119 | 56 | 1 | 1 | 118 | 1 | 119 | 5.29e-38 | 141 |
| Msa0564090 | AT4G11660.1 | 62.766 | 94 | 35 | 0 | 20 | 113 | 57 | 150 | 2.74e-37 | 141 |
| Msa0564090 | AT4G36990.1 | 60.417 | 96 | 38 | 0 | 20 | 115 | 12 | 107 | 4.89e-37 | 138 |
| Msa0564090 | AT2G41690.1 | 53.846 | 117 | 54 | 0 | 20 | 136 | 38 | 154 | 1.14e-36 | 135 |
| Msa0564090 | AT4G18870.1 | 47.368 | 95 | 49 | 1 | 15 | 109 | 6 | 99 | 3.92e-21 | 94.0 |
| Msa0564090 | AT4G18870.1 | 45.455 | 88 | 48 | 0 | 22 | 109 | 146 | 233 | 5.91e-21 | 93.6 |
| Msa0564090 | AT1G77570.1 | 42.222 | 90 | 49 | 2 | 23 | 109 | 27 | 116 | 7.40e-18 | 80.9 |
| Msa0564090 | AT2G26150.3 | 35.664 | 143 | 84 | 4 | 82 | 216 | 49 | 191 | 1.65e-16 | 80.5 |
| Msa0564090 | AT2G26150.2 | 35.664 | 143 | 84 | 4 | 82 | 216 | 49 | 191 | 1.65e-16 | 80.5 |
Find 144 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCAATGCTGCCCTTTC+TGG | -0.033953 | 4_1:-64571277 | None:intergenic |
| CAATTTCCTGACAGTTTATT+TGG | 0.134687 | 4_1:-64572017 | None:intergenic |
| TCTGCAAGGTCTAGTGTTTC+AGG | 0.179480 | 4_1:-64571802 | None:intergenic |
| AGCAATTTCAGACTGGAATT+TGG | 0.185327 | 4_1:+64571598 | Msa0564090:CDS |
| CCTTCTTCTTGCTCACTATT+TGG | 0.197563 | 4_1:-64572279 | None:intergenic |
| CTTCTTTGAGAAGGCTCTTC+AGG | 0.211830 | 4_1:+64571444 | Msa0564090:CDS |
| ATCCATGTTCTTGATGTTAC+TGG | 0.248725 | 4_1:-64572322 | None:intergenic |
| CAAATAAACTGTCAGGAAAT+TGG | 0.249049 | 4_1:+64572018 | Msa0564090:CDS |
| GGCTCCAGAGAATGAAGATT+TGG | 0.274713 | 4_1:-64571892 | None:intergenic |
| ACACTAGACCTTGCAGATAC+TGG | 0.281618 | 4_1:+64571808 | Msa0564090:CDS |
| CTGTCAGGAAATTGGCAATT+TGG | 0.285988 | 4_1:+64572026 | Msa0564090:CDS |
| GAAATTGTTGTGCTTGAAAT+AGG | 0.289577 | 4_1:-64569409 | None:intergenic |
| CCCTTTGAGCATGCTGTCTT+GGG | 0.294399 | 4_1:+64572352 | Msa0564090:exon |
| AATTTCCTGACAGTTTATTT+GGG | 0.297215 | 4_1:-64572016 | None:intergenic |
| ATAACAAAAGCTTCATTGTT+TGG | 0.304742 | 4_1:+64569352 | Msa0564090:CDS |
| ACGGGGTGAATGATGTGTTT+TGG | 0.315138 | 4_1:+64572187 | Msa0564090:CDS |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 4_1:+64569322 | Msa0564090:CDS |
| ACCCTTTGAGCATGCTGTCT+TGG | 0.321674 | 4_1:+64572351 | Msa0564090:exon |
| GCAATTTCAGACTGGAATTT+GGG | 0.327997 | 4_1:+64571599 | Msa0564090:CDS |
| GATGGTAAAGAATCTGAAAT+TGG | 0.330710 | 4_1:+64572069 | Msa0564090:CDS |
| CTCTTTCTTCTTGCTTAGGC+TGG | 0.332192 | 4_1:-64569136 | None:intergenic |
| CTTGTACATTGGAATTCAAT+AGG | 0.346549 | 4_1:+64571971 | Msa0564090:CDS |
| AGAAGAACACGGGAGAATTC+AGG | 0.363985 | 4_1:-64569381 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.364324 | 4_1:+64571495 | Msa0564090:CDS |
| AACTCTGGCATCTTGTACAT+TGG | 0.365517 | 4_1:+64571960 | Msa0564090:CDS |
| CTATCACCTTCTTCAGTACT+TGG | 0.371141 | 4_1:-64571913 | None:intergenic |
| TTGCTTAGGCTGGTATTTGT+TGG | 0.372607 | 4_1:-64569126 | None:intergenic |
| GAAGAAGGGCGGTCAGTTCA+TGG | 0.385884 | 4_1:+64572294 | Msa0564090:CDS |
| ATTAGCCACATTTCGGTTTG+TGG | 0.388053 | 4_1:-64572097 | None:intergenic |
| GAAGCTCTTTCTTCTTGCTT+AGG | 0.390484 | 4_1:-64569140 | None:intergenic |
| TCAGATATGAACTTGATATC+AGG | 0.394555 | 4_1:+64571679 | Msa0564090:CDS |
| TGTCTTGGGACACTTGCTAT+TGG | 0.398401 | 4_1:+64572366 | Msa0564090:three_prime_UTR |
| ATTTGGAATTGCTCGATAGT+TGG | 0.404937 | 4_1:-64572262 | None:intergenic |
| TAGCCTCATTAGCCACATTT+CGG | 0.405235 | 4_1:-64572104 | None:intergenic |
| TCAAAGCTGCTGCTCGGCAC+GGG | 0.408584 | 4_1:+64572169 | Msa0564090:CDS |
| ACAGGAATGCAGACAAGAAC+TGG | 0.408767 | 4_1:+64571766 | Msa0564090:CDS |
| GCTCCAGAGAATGAAGATTT+GGG | 0.410466 | 4_1:-64571891 | None:intergenic |
| CACTAGACCTTGCAGATACT+GGG | 0.411215 | 4_1:+64571809 | Msa0564090:CDS |
| GCCGCTGCCGCCGGAGGAAG+CGG | 0.414745 | 4_1:+64569246 | Msa0564090:CDS |
| CGGAGGAAGCGGAGGAGGTC+CGG | 0.415280 | 4_1:+64569257 | Msa0564090:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 4_1:-64571565 | None:intergenic |
| GTGCCCAAATCTTCATTCTC+TGG | 0.418424 | 4_1:+64571888 | Msa0564090:CDS |
| CATTCAAAACTTGAATATAT+AGG | 0.419766 | 4_1:-64572588 | None:intergenic |
| CAGAGTTAAATTTAGTTGGC+AGG | 0.423956 | 4_1:-64571944 | None:intergenic |
| AGCTTAAGAGCTTGGATTGA+AGG | 0.426622 | 4_1:-64571333 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.431681 | 4_1:-64572141 | None:intergenic |
| ATGCCAGAGTTAAATTTAGT+TGG | 0.435087 | 4_1:-64571948 | None:intergenic |
| TCCGCTTCCTCCGGCGGCAG+CGG | 0.440478 | 4_1:-64569247 | None:intergenic |
| ATAACTGTAGCTTAAGAGCT+TGG | 0.443695 | 4_1:-64571341 | None:intergenic |
| GCCGAGCAGCAGCTTTGACT+TGG | 0.452625 | 4_1:-64572164 | None:intergenic |
| TAAGAAAAGGCGATTGCCTC+AGG | 0.456333 | 4_1:+64571528 | Msa0564090:CDS |
| TGGCAGCTTATAATAAGAAA+AGG | 0.461564 | 4_1:+64571515 | Msa0564090:CDS |
| TTACCTGAAGCCTCCTTTGG+TGG | 0.465202 | 4_1:-64572138 | None:intergenic |
| GCTCCACCAAAGGAGGCTTC+AGG | 0.466668 | 4_1:+64572135 | Msa0564090:CDS |
| GCCGCCGGAGGAAGCGGAGG+AGG | 0.467841 | 4_1:+64569252 | Msa0564090:CDS |
| AAAAGCAGATCCTGAGCGTT+GGG | 0.472666 | 4_1:+64571147 | Msa0564090:CDS |
| TGCATTGCGAATTAGTTGTC+TGG | 0.473142 | 4_1:+64572482 | Msa0564090:three_prime_UTR |
| CCCAAGACAGCATGCTCAAA+GGG | 0.473933 | 4_1:-64572352 | None:intergenic |
| TCCTCATCAGCCGCTGCCGC+CGG | 0.477669 | 4_1:+64569237 | Msa0564090:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.478636 | 4_1:+64571489 | Msa0564090:CDS |
| TCACAGTCATAGTCATCCTC+CGG | 0.482739 | 4_1:+64571240 | Msa0564090:CDS |
| CCAAATAGTGAGCAAGAAGA+AGG | 0.485282 | 4_1:+64572279 | Msa0564090:CDS |
| GGATGACTATGACTGTGAAT+AGG | 0.487235 | 4_1:-64571235 | None:intergenic |
| GTCGCCCCAAATAAACTGTC+AGG | 0.490553 | 4_1:+64572011 | Msa0564090:CDS |
| AATTCCAGTCTGAAATTGCT+AGG | 0.494876 | 4_1:-64571595 | None:intergenic |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 4_1:+64571273 | Msa0564090:CDS |
| TGTTGTGCTTGAAATAGGTT+GGG | 0.496826 | 4_1:-64569404 | None:intergenic |
| ACAGTTTATTTGGGGCGACC+TGG | 0.496979 | 4_1:-64572007 | None:intergenic |
| TGAGACAGAAAAGCTTCAGC+TGG | 0.500611 | 4_1:+64571366 | Msa0564090:CDS |
| CTGCCAACTAAATTTAACTC+TGG | 0.500806 | 4_1:+64571945 | Msa0564090:CDS |
| AAACCGAAATGTGGCTAATG+AGG | 0.502956 | 4_1:+64572101 | Msa0564090:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 4_1:-64569433 | None:intergenic |
| GTCAAAGCTGCTGCTCGGCA+CGG | 0.509514 | 4_1:+64572168 | Msa0564090:CDS |
| TTTGCAGAACTTCTTTGAGA+AGG | 0.509914 | 4_1:+64571435 | Msa0564090:CDS |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.510527 | 4_1:+64571564 | Msa0564090:CDS |
| TCCGGCGGCAGCGGCTGATG+AGG | 0.511352 | 4_1:-64569238 | None:intergenic |
| TTGTTGTGCTTGAAATAGGT+TGG | 0.514168 | 4_1:-64569405 | None:intergenic |
| CTGCAAGGTCTAGTGTTTCA+GGG | 0.517628 | 4_1:-64571801 | None:intergenic |
| ATAGGAATTCATACTCGGCC+AGG | 0.518045 | 4_1:+64571989 | Msa0564090:CDS |
| TCTTCATTGTCTGAACAGCC+TGG | 0.518791 | 4_1:-64572231 | None:intergenic |
| TTGGCAAACTCCCAACGCTC+AGG | 0.519786 | 4_1:-64571157 | None:intergenic |
| AACAGCCTGGTCTTTCAGTA+AGG | 0.527046 | 4_1:-64572218 | None:intergenic |
| AGTTTATTTGAGATATCTTG+AGG | 0.532987 | 4_1:-64571631 | None:intergenic |
| GCTTAAGAGCTTGGATTGAA+GGG | 0.534276 | 4_1:-64571332 | None:intergenic |
| ATTATAAGCTGCCAAATCCA+TGG | 0.537709 | 4_1:-64571506 | None:intergenic |
| GTTTATTTGAGATATCTTGA+GGG | 0.542382 | 4_1:-64571630 | None:intergenic |
| CTCCAGTAACATCAAGAACA+TGG | 0.542746 | 4_1:+64572320 | Msa0564090:CDS |
| TCATACGTCTTCTGAAGAAA+CGG | 0.543831 | 4_1:-64569282 | None:intergenic |
| CAGTTTCAAGTCTACAATAC+CGG | 0.544876 | 4_1:-64572541 | None:intergenic |
| GAAAAGCAGATCCTGAGCGT+TGG | 0.545857 | 4_1:+64571146 | Msa0564090:CDS |
| CTGTCTGAAGGAGAACTGAC+AGG | 0.546477 | 4_1:+64571748 | Msa0564090:CDS |
| CAATCCTAGCAATTTCAGAC+TGG | 0.548773 | 4_1:+64571591 | Msa0564090:CDS |
| TCAGCGGCGATTGGATGGCA+TGG | 0.549084 | 4_1:+64571396 | Msa0564090:CDS |
| ATTGTCAACCAAGCTACCTT+CGG | 0.550180 | 4_1:-64571572 | None:intergenic |
| TATTTGTTGGCGTTTGCTGT+TGG | 0.550752 | 4_1:-64569113 | None:intergenic |
| CAAAGCTGCTGCTCGGCACG+GGG | 0.552279 | 4_1:+64572170 | Msa0564090:CDS |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 4_1:+64571241 | Msa0564090:CDS |
| CGGACCTCCTCCGCTTCCTC+CGG | 0.560425 | 4_1:-64569256 | None:intergenic |
| TCCCAAGACAGCATGCTCAA+AGG | 0.561043 | 4_1:-64572353 | None:intergenic |
| GAGTCAAGAGTTAACGCTGA+TGG | 0.561131 | 4_1:+64572051 | Msa0564090:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 4_1:+64571264 | Msa0564090:CDS |
| CTGGAGCCAAGTACTGAAGA+AGG | 0.565718 | 4_1:+64571907 | Msa0564090:CDS |
| TTCTGAAGAATATACACCGC+AGG | 0.566868 | 4_1:+64571209 | Msa0564090:CDS |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 4_1:+64571263 | Msa0564090:CDS |
| GCTGCCGCCGGAGGAAGCGG+AGG | 0.569858 | 4_1:+64569249 | Msa0564090:CDS |
| TCATCAGCCGCTGCCGCCGG+AGG | 0.573945 | 4_1:+64569240 | Msa0564090:CDS |
| AAGTTCATATCTGAGACAGC+TGG | 0.576214 | 4_1:-64571670 | None:intergenic |
| ACCTCCTCCGCTTCCTCCGG+CGG | 0.590329 | 4_1:-64569253 | None:intergenic |
| GATTGGATGGCATGGAGAAG+AGG | 0.590608 | 4_1:+64571404 | Msa0564090:CDS |
| CAATCTAGCTCCACCAAAGG+AGG | 0.593167 | 4_1:+64572128 | Msa0564090:CDS |
| CACGTGCAGCCTGTTGCCGA+AGG | 0.594030 | 4_1:+64571556 | Msa0564090:CDS |
| GCAGCGGCTGATGAGGATTG+TGG | 0.595315 | 4_1:-64569231 | None:intergenic |
| GTCTTCTGAAGAAACGGTGC+CGG | 0.596431 | 4_1:-64569276 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 4_1:-64569443 | None:intergenic |
| AGAATGAAGATTTGGGCACT+CGG | 0.602552 | 4_1:-64571884 | None:intergenic |
| TCCAAGTCAAAGCTGCTGCT+CGG | 0.603523 | 4_1:+64572163 | Msa0564090:CDS |
| GTGCAGAATTCATTTCGTAA+CGG | 0.603673 | 4_1:-64569209 | None:intergenic |
| CAAATAGTGAGCAAGAAGAA+GGG | 0.604496 | 4_1:+64572280 | Msa0564090:CDS |
| ATTTCCTGACAGTTTATTTG+GGG | 0.606554 | 4_1:-64572015 | None:intergenic |
| AATAGGTTGGGAGAAGAACA+CGG | 0.613461 | 4_1:-64569392 | None:intergenic |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 4_1:-64571259 | None:intergenic |
| AGAAACGATCTCATCTGTGG+TGG | 0.614963 | 4_1:-64569319 | None:intergenic |
| AGTTTCCACAAACCGAAATG+TGG | 0.624523 | 4_1:+64572092 | Msa0564090:CDS |
| GTGTTTCAGGGGTAAAAGCA+AGG | 0.625370 | 4_1:-64571789 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 4_1:-64569322 | None:intergenic |
| TTGATATCAGGTAGCACACA+GGG | 0.633161 | 4_1:+64571691 | Msa0564090:CDS |
| ACAGGGTTCAAACGAAGATG+AGG | 0.634687 | 4_1:+64571708 | Msa0564090:CDS |
| TGCAAGGTCTAGTGTTTCAG+GGG | 0.637403 | 4_1:-64571800 | None:intergenic |
| ATTCAATAGGAATTCATACT+CGG | 0.642142 | 4_1:+64571984 | Msa0564090:CDS |
| GACTGTGAATAGGTTTCCTG+CGG | 0.644543 | 4_1:-64571225 | None:intergenic |
| AGAACACGGGAGAATTCAGG+AGG | 0.649555 | 4_1:-64569378 | None:intergenic |
| ATAGGTTGGGAGAAGAACAC+GGG | 0.651753 | 4_1:-64569391 | None:intergenic |
| AATTTCCTTACTGAAAGACC+AGG | 0.654469 | 4_1:+64572213 | Msa0564090:CDS |
| AAGATGCCCCAGTATCTGCA+AGG | 0.666464 | 4_1:-64571816 | None:intergenic |
| AGGCTGTTCAGACAATGAAG+AGG | 0.672815 | 4_1:+64572233 | Msa0564090:CDS |
| TATCAATCTAGCTCCACCAA+AGG | 0.674289 | 4_1:+64572125 | Msa0564090:CDS |
| TCTTCAGAAGACGTATGACA+TGG | 0.676071 | 4_1:+64569287 | Msa0564090:CDS |
| CTTGATATCAGGTAGCACAC+AGG | 0.676389 | 4_1:+64571690 | Msa0564090:CDS |
| GGCTGCACGTGATCAACCTG+AGG | 0.691898 | 4_1:-64571544 | None:intergenic |
| TCAGAAGACGTATGACATGG+TGG | 0.698200 | 4_1:+64569290 | Msa0564090:CDS |
| ACTAGACCTTGCAGATACTG+GGG | 0.701020 | 4_1:+64571810 | Msa0564090:CDS |
| ATAGTGAGCAAGAAGAAGGG+CGG | 0.709670 | 4_1:+64572283 | Msa0564090:CDS |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 4_1:-64571256 | None:intergenic |
| GAACACGGGAGAATTCAGGA+GGG | 0.754078 | 4_1:-64569377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTGTAAATATTTAA+TGG | + | chr4_1:64571009-64571028 | Msa0564090:intron | 10.0% |
| !!! | ATTTATGTTTTAATTTGTTA+TGG | + | chr4_1:64571091-64571110 | Msa0564090:intron | 10.0% |
| !! | ATATCATATTTATATAGTTC+TGG | - | chr4_1:64570124-64570143 | None:intergenic | 15.0% |
| !! | ATAAATATGATATGATGATA+TGG | + | chr4_1:64570131-64570150 | Msa0564090:intron | 15.0% |
| !! | TCAATAAAAATTTACAATAC+AGG | - | chr4_1:64570860-64570879 | None:intergenic | 15.0% |
| !!! | ATCTTTTATAAATTCTTCAT+TGG | - | chr4_1:64571179-64571198 | None:intergenic | 15.0% |
| !! | ATTATGAACAACTTTAGATT+TGG | + | chr4_1:64569667-64569686 | Msa0564090:intron | 20.0% |
| !!! | AATTTAGTCTTTGAAGTATA+TGG | + | chr4_1:64570207-64570226 | Msa0564090:intron | 20.0% |
| !!! | AAGCTAACTTTTTTTTTTCA+TGG | - | chr4_1:64570606-64570625 | None:intergenic | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr4_1:64570706-64570725 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr4_1:64570707-64570726 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCT+GGG | - | chr4_1:64570745-64570764 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+TGG | - | chr4_1:64570746-64570765 | None:intergenic | 20.0% |
| !!! | ATTTATATGTGCTTTTTATC+AGG | + | chr4_1:64571117-64571136 | Msa0564090:intron | 20.0% |
| !!! | TTTATATGTGCTTTTTATCA+GGG | + | chr4_1:64571118-64571137 | Msa0564090:intron | 20.0% |
| !! | CATTCAAAACTTGAATATAT+AGG | - | chr4_1:64572591-64572610 | None:intergenic | 20.0% |
| !!! | CTATATATTCAAGTTTTGAA+TGG | + | chr4_1:64572589-64572608 | Msa0564090:three_prime_UTR | 20.0% |
| ! | ATAACAAAAGCTTCATTGTT+TGG | + | chr4_1:64569352-64569371 | Msa0564090:CDS | 25.0% |
| ! | AAAAATCTGCTTAGTAAGAT+AGG | + | chr4_1:64569643-64569662 | Msa0564090:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr4_1:64570080-64570099 | None:intergenic | 25.0% |
| !!! | ATTGACACATTTTTGTTTTC+CGG | - | chr4_1:64570190-64570209 | None:intergenic | 25.0% |
| !! | ACTACTTATCATGTTTCTAT+AGG | + | chr4_1:64570307-64570326 | Msa0564090:intron | 25.0% |
| !! | CTACTTATCATGTTTCTATA+GGG | + | chr4_1:64570308-64570327 | Msa0564090:intron | 25.0% |
| !! | TAGAGACTAAATTTGAGATA+GGG | + | chr4_1:64570331-64570350 | Msa0564090:intron | 25.0% |
| ! | TGGGCAATTATTGAATTTAA+AGG | + | chr4_1:64570518-64570537 | Msa0564090:intron | 25.0% |
| ! | ATGTGAAAGATTTGAAAACA+AGG | - | chr4_1:64570658-64570677 | None:intergenic | 25.0% |
| !! | TTGTTTTCAAATCTTTCACA+TGG | + | chr4_1:64570657-64570676 | Msa0564090:intron | 25.0% |
| ! | TTGATATCTAACTCTTAGAT+AGG | + | chr4_1:64570891-64570910 | Msa0564090:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr4_1:64570920-64570939 | Msa0564090:intron | 25.0% |
| ! | ATGGCAATGATTAAAAACTA+AGG | + | chr4_1:64570939-64570958 | Msa0564090:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr4_1:64570984-64571003 | None:intergenic | 25.0% |
| !! | GTTTATTTGAGATATCTTGA+GGG | - | chr4_1:64571633-64571652 | None:intergenic | 25.0% |
| !! | AGTTTATTTGAGATATCTTG+AGG | - | chr4_1:64571634-64571653 | None:intergenic | 25.0% |
| ! | ATTCAATAGGAATTCATACT+CGG | + | chr4_1:64571984-64572003 | Msa0564090:CDS | 25.0% |
| ! | AATTTCCTGACAGTTTATTT+GGG | - | chr4_1:64572019-64572038 | None:intergenic | 25.0% |
| GAAATTGTTGTGCTTGAAAT+AGG | - | chr4_1:64569412-64569431 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr4_1:64569460-64569479 | None:intergenic | 30.0% |
| TGGATTTCATTGAGTCTAAT+TGG | + | chr4_1:64569687-64569706 | Msa0564090:intron | 30.0% | |
| TAATTGGAGTTGCAAAATGT+TGG | + | chr4_1:64569703-64569722 | Msa0564090:intron | 30.0% | |
| AATTGGAGTTGCAAAATGTT+GGG | + | chr4_1:64569704-64569723 | Msa0564090:intron | 30.0% | |
| ACACTGAATTATGTCATTGT+CGG | - | chr4_1:64569847-64569866 | None:intergenic | 30.0% | |
| AAAAAAAATTCTGCAGCATC+TGG | + | chr4_1:64570020-64570039 | Msa0564090:intron | 30.0% | |
| !!! | TTGATGGTTTTATTCATGAC+TGG | - | chr4_1:64570064-64570083 | None:intergenic | 30.0% |
| TCTGAATATCACACTATTTC+TGG | + | chr4_1:64570091-64570110 | Msa0564090:intron | 30.0% | |
| TCATCATATCACACTATTTC+TGG | - | chr4_1:64570164-64570183 | None:intergenic | 30.0% | |
| !!! | TTGACACATTTTTGTTTTCC+GGG | - | chr4_1:64570189-64570208 | None:intergenic | 30.0% |
| ! | GTAGAGACTAAATTTGAGAT+AGG | + | chr4_1:64570330-64570349 | Msa0564090:intron | 30.0% |
| TAATTCAGGGACTAAATTGA+TGG | + | chr4_1:64570357-64570376 | Msa0564090:intron | 30.0% | |
| ! | CTATCTCTTTTACCAAAACA+AGG | - | chr4_1:64570423-64570442 | None:intergenic | 30.0% |
| ATTCAATAATTGCCCATGTA+TGG | - | chr4_1:64570514-64570533 | None:intergenic | 30.0% | |
| GGTTATAGTATGCACTTAAT+GGG | - | chr4_1:64570724-64570743 | None:intergenic | 30.0% | |
| TTGATTGATATGATGATACC+CGG | + | chr4_1:64570814-64570833 | Msa0564090:intron | 30.0% | |
| !!! | TGTTTGCCATTTTTGTTTTC+CGG | - | chr4_1:64570836-64570855 | None:intergenic | 30.0% |
| TGGCAGCTTATAATAAGAAA+AGG | + | chr4_1:64571515-64571534 | Msa0564090:CDS | 30.0% | |
| TCAGATATGAACTTGATATC+AGG | + | chr4_1:64571679-64571698 | Msa0564090:CDS | 30.0% | |
| !! | GGCATCTTTTACTTTTAACA+TGG | + | chr4_1:64571831-64571850 | Msa0564090:CDS | 30.0% |
| ATGCCAGAGTTAAATTTAGT+TGG | - | chr4_1:64571951-64571970 | None:intergenic | 30.0% | |
| CTTGTACATTGGAATTCAAT+AGG | + | chr4_1:64571971-64571990 | Msa0564090:CDS | 30.0% | |
| ATTTCCTGACAGTTTATTTG+GGG | - | chr4_1:64572018-64572037 | None:intergenic | 30.0% | |
| CAATTTCCTGACAGTTTATT+TGG | - | chr4_1:64572020-64572039 | None:intergenic | 30.0% | |
| CAAATAAACTGTCAGGAAAT+TGG | + | chr4_1:64572018-64572037 | Msa0564090:CDS | 30.0% | |
| ! | GATGGTAAAGAATCTGAAAT+TGG | + | chr4_1:64572069-64572088 | Msa0564090:CDS | 30.0% |
| !!! | AAGTTTTGAATGGTTTTCAC+AGG | + | chr4_1:64572599-64572618 | Msa0564090:three_prime_UTR | 30.0% |
| TTAAAAAGTCTTCGACTATG+CGG | + | chr4_1:64572632-64572651 | Msa0564090:three_prime_UTR | 30.0% | |
| GTGCAGAATTCATTTCGTAA+CGG | - | chr4_1:64569212-64569231 | None:intergenic | 35.0% | |
| ! | TCATACGTCTTCTGAAGAAA+CGG | - | chr4_1:64569285-64569304 | None:intergenic | 35.0% |
| TGTTGTGCTTGAAATAGGTT+GGG | - | chr4_1:64569407-64569426 | None:intergenic | 35.0% | |
| TTGTTGTGCTTGAAATAGGT+TGG | - | chr4_1:64569408-64569427 | None:intergenic | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr4_1:64569446-64569465 | None:intergenic | 35.0% |
| ATCCATCTTTCATCATTCTC+AGG | - | chr4_1:64569731-64569750 | None:intergenic | 35.0% | |
| AATTATGTCATTGTCGGTGT+CGG | - | chr4_1:64569841-64569860 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+TGG | - | chr4_1:64569938-64569957 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+CGG | + | chr4_1:64569939-64569958 | Msa0564090:intron | 35.0% |
| !! | TAGGTCTTAATTTTCGGTGT+GGG | + | chr4_1:64569945-64569964 | Msa0564090:intron | 35.0% |
| TAGTGTGATATGATGATACC+CGG | + | chr4_1:64570168-64570187 | Msa0564090:intron | 35.0% | |
| ! | GTGACTTGTGACTAAATTGA+CGG | + | chr4_1:64570266-64570285 | Msa0564090:intron | 35.0% |
| ! | TGACTTGTGACTAAATTGAC+GGG | + | chr4_1:64570267-64570286 | Msa0564090:intron | 35.0% |
| TTGAGATAGGGTGATAATTC+AGG | + | chr4_1:64570343-64570362 | Msa0564090:intron | 35.0% | |
| TGAGATAGGGTGATAATTCA+GGG | + | chr4_1:64570344-64570363 | Msa0564090:intron | 35.0% | |
| TCTTTCACATGGCTAATCTA+TGG | + | chr4_1:64570668-64570687 | Msa0564090:intron | 35.0% | |
| CTTTCACATGGCTAATCTAT+GGG | + | chr4_1:64570669-64570688 | Msa0564090:intron | 35.0% | |
| GGGTTATAGTATGCACTTAA+TGG | - | chr4_1:64570725-64570744 | None:intergenic | 35.0% | |
| TGATACCCGGAAAACAAAAA+TGG | + | chr4_1:64570181-64570200 | Msa0564090:intron | 35.0% | |
| !!! | GTTTGCCATTTTTGTTTTCC+GGG | - | chr4_1:64570835-64570854 | None:intergenic | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr4_1:64570972-64570991 | None:intergenic | 35.0% | |
| AATCGTTCAAAGAAGTTTGC+AGG | + | chr4_1:64571034-64571053 | Msa0564090:intron | 35.0% | |
| AAAGAAGTTTGCAGGTCTTA+TGG | + | chr4_1:64571042-64571061 | Msa0564090:intron | 35.0% | |
| ATAACTGTAGCTTAAGAGCT+TGG | - | chr4_1:64571344-64571363 | None:intergenic | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | + | chr4_1:64571435-64571454 | Msa0564090:CDS | 35.0% |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr4_1:64571495-64571514 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr4_1:64571495-64571514 | Msa0564090:CDS | 35.0% | |
| ATTATAAGCTGCCAAATCCA+TGG | - | chr4_1:64571509-64571528 | None:intergenic | 35.0% | |
| ! | AATTCCAGTCTGAAATTGCT+AGG | - | chr4_1:64571598-64571617 | None:intergenic | 35.0% |
| AGCAATTTCAGACTGGAATT+TGG | + | chr4_1:64571598-64571617 | Msa0564090:CDS | 35.0% | |
| GCAATTTCAGACTGGAATTT+GGG | + | chr4_1:64571599-64571618 | Msa0564090:CDS | 35.0% | |
| CAGAGTTAAATTTAGTTGGC+AGG | - | chr4_1:64571947-64571966 | None:intergenic | 35.0% | |
| CTGCCAACTAAATTTAACTC+TGG | + | chr4_1:64571945-64571964 | Msa0564090:CDS | 35.0% | |
| AATTTCCTTACTGAAAGACC+AGG | + | chr4_1:64572213-64572232 | Msa0564090:CDS | 35.0% | |
| ! | ATTTGGAATTGCTCGATAGT+TGG | - | chr4_1:64572265-64572284 | None:intergenic | 35.0% |
| CAAATAGTGAGCAAGAAGAA+GGG | + | chr4_1:64572280-64572299 | Msa0564090:CDS | 35.0% | |
| ATCCATGTTCTTGATGTTAC+TGG | - | chr4_1:64572325-64572344 | None:intergenic | 35.0% | |
| ! | AAGCTTTTAGTGGTTTTCAC+CGG | + | chr4_1:64572522-64572541 | Msa0564090:three_prime_UTR | 35.0% |
| ! | CAGTTTCAAGTCTACAATAC+CGG | - | chr4_1:64572544-64572563 | None:intergenic | 35.0% |
| !! | TATTTGTTGGCGTTTGCTGT+TGG | - | chr4_1:64569116-64569135 | None:intergenic | 40.0% |
| TTGCTTAGGCTGGTATTTGT+TGG | - | chr4_1:64569129-64569148 | None:intergenic | 40.0% | |
| GAAGCTCTTTCTTCTTGCTT+AGG | - | chr4_1:64569143-64569162 | None:intergenic | 40.0% | |
| TCTTCAGAAGACGTATGACA+TGG | + | chr4_1:64569287-64569306 | Msa0564090:CDS | 40.0% | |
| ! | AATAGGTTGGGAGAAGAACA+CGG | - | chr4_1:64569395-64569414 | None:intergenic | 40.0% |
| CTTAGTCGAGTTTCAATCAG+TGG | + | chr4_1:64569580-64569599 | Msa0564090:intron | 40.0% | |
| GACCTGAGAATGATGAAAGA+TGG | + | chr4_1:64569726-64569745 | Msa0564090:intron | 40.0% | |
| TGAAGCACAAACATAGACAC+CGG | + | chr4_1:64569787-64569806 | Msa0564090:intron | 40.0% | |
| ! | TAAGGTGTTTGTGTTGTGTC+CGG | - | chr4_1:64569809-64569828 | None:intergenic | 40.0% |
| ! | CATACGTGTCATTGTTGTGT+CGG | + | chr4_1:64569870-64569889 | Msa0564090:intron | 40.0% |
| ! | GTAGGTCTTAATTTTCGGTG+TGG | + | chr4_1:64569944-64569963 | Msa0564090:intron | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr4_1:64569970-64569989 | Msa0564090:intron | 40.0% |
| CAAAACAAGGACGAGTTGTA+TGG | - | chr4_1:64570410-64570429 | None:intergenic | 40.0% | |
| !! | CATACAACTCGTCCTTGTTT+TGG | + | chr4_1:64570408-64570427 | Msa0564090:intron | 40.0% |
| ! | GTTCGCGAATGTGTCATTAA+CGG | + | chr4_1:64570460-64570479 | Msa0564090:intron | 40.0% |
| ! | TGACTGACACGGGAAATTTT+GGG | - | chr4_1:64570549-64570568 | None:intergenic | 40.0% |
| ! | ATGACTGACACGGGAAATTT+TGG | - | chr4_1:64570550-64570569 | None:intergenic | 40.0% |
| ATGTCTACGATGCAGAAGAA+AGG | - | chr4_1:64570770-64570789 | None:intergenic | 40.0% | |
| ! | TTCTGAAGAATATACACCGC+AGG | + | chr4_1:64571209-64571228 | Msa0564090:CDS | 40.0% |
| GGATGACTATGACTGTGAAT+AGG | - | chr4_1:64571238-64571257 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr4_1:64571264-64571283 | Msa0564090:CDS | 40.0% | |
| GCTTAAGAGCTTGGATTGAA+GGG | - | chr4_1:64571335-64571354 | None:intergenic | 40.0% | |
| AGCTTAAGAGCTTGGATTGA+AGG | - | chr4_1:64571336-64571355 | None:intergenic | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr4_1:64571380-64571399 | Msa0564090:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr4_1:64571494-64571513 | None:intergenic | 40.0% |
| ATTGTCAACCAAGCTACCTT+CGG | - | chr4_1:64571575-64571594 | None:intergenic | 40.0% | |
| CAATCCTAGCAATTTCAGAC+TGG | + | chr4_1:64571591-64571610 | Msa0564090:CDS | 40.0% | |
| ! | AAGTTCATATCTGAGACAGC+TGG | - | chr4_1:64571673-64571692 | None:intergenic | 40.0% |
| TTGATATCAGGTAGCACACA+GGG | + | chr4_1:64571691-64571710 | Msa0564090:CDS | 40.0% | |
| ! | CTTCAGACAGATTTTTCTGC+AGG | - | chr4_1:64571738-64571757 | None:intergenic | 40.0% |
| CTGCAGAAAAATCTGTCTGA+AGG | + | chr4_1:64571736-64571755 | Msa0564090:CDS | 40.0% | |
| AGAATGAAGATTTGGGCACT+CGG | - | chr4_1:64571887-64571906 | None:intergenic | 40.0% | |
| GCTCCAGAGAATGAAGATTT+GGG | - | chr4_1:64571894-64571913 | None:intergenic | 40.0% | |
| CTATCACCTTCTTCAGTACT+TGG | - | chr4_1:64571916-64571935 | None:intergenic | 40.0% | |
| AACTCTGGCATCTTGTACAT+TGG | + | chr4_1:64571960-64571979 | Msa0564090:CDS | 40.0% | |
| CTGTCAGGAAATTGGCAATT+TGG | + | chr4_1:64572026-64572045 | Msa0564090:CDS | 40.0% | |
| AGTTTCCACAAACCGAAATG+TGG | + | chr4_1:64572092-64572111 | Msa0564090:CDS | 40.0% | |
| ! | ATTAGCCACATTTCGGTTTG+TGG | - | chr4_1:64572100-64572119 | None:intergenic | 40.0% |
| AAACCGAAATGTGGCTAATG+AGG | + | chr4_1:64572101-64572120 | Msa0564090:CDS | 40.0% | |
| TAGCCTCATTAGCCACATTT+CGG | - | chr4_1:64572107-64572126 | None:intergenic | 40.0% | |
| ! | TATCAATCTAGCTCCACCAA+AGG | + | chr4_1:64572125-64572144 | Msa0564090:CDS | 40.0% |
| CCTTCTTCTTGCTCACTATT+TGG | - | chr4_1:64572282-64572301 | None:intergenic | 40.0% | |
| CCAAATAGTGAGCAAGAAGA+AGG | + | chr4_1:64572279-64572298 | Msa0564090:CDS | 40.0% | |
| CTCCAGTAACATCAAGAACA+TGG | + | chr4_1:64572320-64572339 | Msa0564090:CDS | 40.0% | |
| TGCATTGCGAATTAGTTGTC+TGG | + | chr4_1:64572482-64572501 | Msa0564090:three_prime_UTR | 40.0% | |
| ! | GTAGACGTTCAAGCTTTTAG+TGG | + | chr4_1:64572512-64572531 | Msa0564090:three_prime_UTR | 40.0% |
| CTCTTTCTTCTTGCTTAGGC+TGG | - | chr4_1:64569139-64569158 | None:intergenic | 45.0% | |
| TCAGAAGACGTATGACATGG+TGG | + | chr4_1:64569290-64569309 | Msa0564090:CDS | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | - | chr4_1:64569322-64569341 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | - | chr4_1:64569325-64569344 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | + | chr4_1:64569322-64569341 | Msa0564090:CDS | 45.0% | |
| AGAAGAACACGGGAGAATTC+AGG | - | chr4_1:64569384-64569403 | None:intergenic | 45.0% | |
| ! | ATAGGTTGGGAGAAGAACAC+GGG | - | chr4_1:64569394-64569413 | None:intergenic | 45.0% |
| TACGAAGCATGGACAATCCT+CGG | - | chr4_1:64569927-64569946 | None:intergenic | 45.0% | |
| ATTCTGCAGCATCTGGATCT+TGG | + | chr4_1:64570027-64570046 | Msa0564090:intron | 45.0% | |
| CAGCATCTGGATCTTGGTAA+TGG | + | chr4_1:64570033-64570052 | Msa0564090:intron | 45.0% | |
| AACCTGCGTCTAACCATACA+TGG | + | chr4_1:64570498-64570517 | Msa0564090:intron | 45.0% | |
| ACCTGCGTCTAACCATACAT+GGG | + | chr4_1:64570499-64570518 | Msa0564090:intron | 45.0% | |
| AGACACATCATGACTGACAC+GGG | - | chr4_1:64570559-64570578 | None:intergenic | 45.0% | |
| CAGACACATCATGACTGACA+CGG | - | chr4_1:64570560-64570579 | None:intergenic | 45.0% | |
| ! | GGCTAATCTATGGGTGCTTT+TGG | + | chr4_1:64570678-64570697 | Msa0564090:intron | 45.0% |
| CTACGATGCAGAAGAAAGGT+AGG | - | chr4_1:64570766-64570785 | None:intergenic | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | + | chr4_1:64570781-64570800 | Msa0564090:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | - | chr4_1:64570969-64570988 | None:intergenic | 45.0% | |
| AAAAGCAGATCCTGAGCGTT+GGG | + | chr4_1:64571147-64571166 | Msa0564090:CDS | 45.0% | |
| GACTGTGAATAGGTTTCCTG+CGG | - | chr4_1:64571228-64571247 | None:intergenic | 45.0% | |
| TCACAGTCATAGTCATCCTC+CGG | + | chr4_1:64571240-64571259 | Msa0564090:CDS | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr4_1:64571263-64571282 | Msa0564090:CDS | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | + | chr4_1:64571366-64571385 | Msa0564090:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr4_1:64571444-64571463 | Msa0564090:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr4_1:64571489-64571508 | Msa0564090:CDS | 45.0% | |
| TAAGAAAAGGCGATTGCCTC+AGG | + | chr4_1:64571528-64571547 | Msa0564090:CDS | 45.0% | |
| CTTGATATCAGGTAGCACAC+AGG | + | chr4_1:64571690-64571709 | Msa0564090:CDS | 45.0% | |
| ACAGGGTTCAAACGAAGATG+AGG | + | chr4_1:64571708-64571727 | Msa0564090:CDS | 45.0% | |
| ACAGGAATGCAGACAAGAAC+TGG | + | chr4_1:64571766-64571785 | Msa0564090:CDS | 45.0% | |
| GTGTTTCAGGGGTAAAAGCA+AGG | - | chr4_1:64571792-64571811 | None:intergenic | 45.0% | |
| TGCAAGGTCTAGTGTTTCAG+GGG | - | chr4_1:64571803-64571822 | None:intergenic | 45.0% | |
| CTGCAAGGTCTAGTGTTTCA+GGG | - | chr4_1:64571804-64571823 | None:intergenic | 45.0% | |
| TCTGCAAGGTCTAGTGTTTC+AGG | - | chr4_1:64571805-64571824 | None:intergenic | 45.0% | |
| ACACTAGACCTTGCAGATAC+TGG | + | chr4_1:64571808-64571827 | Msa0564090:CDS | 45.0% | |
| CACTAGACCTTGCAGATACT+GGG | + | chr4_1:64571809-64571828 | Msa0564090:CDS | 45.0% | |
| ACTAGACCTTGCAGATACTG+GGG | + | chr4_1:64571810-64571829 | Msa0564090:CDS | 45.0% | |
| GTGCCCAAATCTTCATTCTC+TGG | + | chr4_1:64571888-64571907 | Msa0564090:CDS | 45.0% | |
| GGCTCCAGAGAATGAAGATT+TGG | - | chr4_1:64571895-64571914 | None:intergenic | 45.0% | |
| ATAGGAATTCATACTCGGCC+AGG | + | chr4_1:64571989-64572008 | Msa0564090:CDS | 45.0% | |
| GAGTCAAGAGTTAACGCTGA+TGG | + | chr4_1:64572051-64572070 | Msa0564090:CDS | 45.0% | |
| ! | ACGGGGTGAATGATGTGTTT+TGG | + | chr4_1:64572187-64572206 | Msa0564090:CDS | 45.0% |
| ! | CGGGGTGAATGATGTGTTTT+GGG | + | chr4_1:64572188-64572207 | Msa0564090:CDS | 45.0% |
| ! | AACAGCCTGGTCTTTCAGTA+AGG | - | chr4_1:64572221-64572240 | None:intergenic | 45.0% |
| TCTTCATTGTCTGAACAGCC+TGG | - | chr4_1:64572234-64572253 | None:intergenic | 45.0% | |
| AGGCTGTTCAGACAATGAAG+AGG | + | chr4_1:64572233-64572252 | Msa0564090:CDS | 45.0% | |
| ATAGTGAGCAAGAAGAAGGG+CGG | + | chr4_1:64572283-64572302 | Msa0564090:CDS | 45.0% | |
| !! | TGTCTTGGGACACTTGCTAT+TGG | + | chr4_1:64572366-64572385 | Msa0564090:three_prime_UTR | 45.0% |
| ! | GTCTTCTGAAGAAACGGTGC+CGG | - | chr4_1:64569279-64569298 | None:intergenic | 50.0% |
| GAACACGGGAGAATTCAGGA+GGG | - | chr4_1:64569380-64569399 | None:intergenic | 50.0% | |
| AGAACACGGGAGAATTCAGG+AGG | - | chr4_1:64569381-64569400 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr4_1:64569436-64569455 | None:intergenic | 50.0% |
| !! | GTCATTGTCGGTGTCGGTTT+CGG | - | chr4_1:64569835-64569854 | None:intergenic | 50.0% |
| GATTAGGTGTGTCCTGACGT+CGG | - | chr4_1:64569905-64569924 | None:intergenic | 50.0% | |
| GCATGGACAATCCTCGGATT+AGG | - | chr4_1:64569921-64569940 | None:intergenic | 50.0% | |
| GAGGATTGTCCATGCTTCGT+AGG | + | chr4_1:64569926-64569945 | Msa0564090:intron | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr4_1:64569957-64569976 | Msa0564090:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr4_1:64569961-64569980 | Msa0564090:intron | 50.0% | |
| ! | GGTTAGACGCAGGTTCTAAC+TGG | - | chr4_1:64570493-64570512 | None:intergenic | 50.0% |
| GAAAAGCAGATCCTGAGCGT+TGG | + | chr4_1:64571146-64571165 | Msa0564090:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr4_1:64571241-64571260 | Msa0564090:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr4_1:64571262-64571281 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr4_1:64571273-64571292 | Msa0564090:CDS | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | + | chr4_1:64571387-64571406 | Msa0564090:CDS | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+TGG | + | chr4_1:64571391-64571410 | Msa0564090:CDS | 50.0% |
| GATTGGATGGCATGGAGAAG+AGG | + | chr4_1:64571404-64571423 | Msa0564090:CDS | 50.0% | |
| CTGTCTGAAGGAGAACTGAC+AGG | + | chr4_1:64571748-64571767 | Msa0564090:CDS | 50.0% | |
| AAGATGCCCCAGTATCTGCA+AGG | - | chr4_1:64571819-64571838 | None:intergenic | 50.0% | |
| !! | CTGGAGCCAAGTACTGAAGA+AGG | + | chr4_1:64571907-64571926 | Msa0564090:CDS | 50.0% |
| ! | ACAGTTTATTTGGGGCGACC+TGG | - | chr4_1:64572010-64572029 | None:intergenic | 50.0% |
| GTCGCCCCAAATAAACTGTC+AGG | + | chr4_1:64572011-64572030 | Msa0564090:CDS | 50.0% | |
| ! | CAATCTAGCTCCACCAAAGG+AGG | + | chr4_1:64572128-64572147 | Msa0564090:CDS | 50.0% |
| TTACCTGAAGCCTCCTTTGG+TGG | - | chr4_1:64572141-64572160 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr4_1:64572144-64572163 | None:intergenic | 50.0% | |
| TCCAAGTCAAAGCTGCTGCT+CGG | + | chr4_1:64572163-64572182 | Msa0564090:CDS | 50.0% | |
| ACCCTTTGAGCATGCTGTCT+TGG | + | chr4_1:64572351-64572370 | Msa0564090:exon | 50.0% | |
| CCCAAGACAGCATGCTCAAA+GGG | - | chr4_1:64572355-64572374 | None:intergenic | 50.0% | |
| CCCTTTGAGCATGCTGTCTT+GGG | + | chr4_1:64572352-64572371 | Msa0564090:exon | 50.0% | |
| TCCCAAGACAGCATGCTCAA+AGG | - | chr4_1:64572356-64572375 | None:intergenic | 50.0% | |
| GTCAGGACACACCTAATCCG+AGG | + | chr4_1:64569907-64569926 | Msa0564090:intron | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr4_1:64569960-64569979 | Msa0564090:intron | 55.0% | |
| GCCCATGTATGGTTAGACGC+AGG | - | chr4_1:64570503-64570522 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | - | chr4_1:64570965-64570984 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | - | chr4_1:64570966-64570985 | None:intergenic | 55.0% | |
| TTGGCAAACTCCCAACGCTC+AGG | - | chr4_1:64571160-64571179 | None:intergenic | 55.0% | |
| TGCTCCAATGCTGCCCTTTC+TGG | - | chr4_1:64571280-64571299 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr4_1:64571568-64571587 | None:intergenic | 55.0% | |
| GAAGAAGGGCGGTCAGTTCA+TGG | + | chr4_1:64572294-64572313 | Msa0564090:CDS | 55.0% | |
| GCAGCGGCTGATGAGGATTG+TGG | - | chr4_1:64569234-64569253 | None:intergenic | 60.0% | |
| !! | CGGTGTCGGTTTCGGCGTTA+AGG | - | chr4_1:64569827-64569846 | None:intergenic | 60.0% |
| GGATCTACAGCAGAACCCGG+AGG | - | chr4_1:64571259-64571278 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | + | chr4_1:64571396-64571415 | Msa0564090:CDS | 60.0% | |
| GGCTGCACGTGATCAACCTG+AGG | - | chr4_1:64571547-64571566 | None:intergenic | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr4_1:64571564-64571583 | Msa0564090:CDS | 60.0% | |
| GCTCCACCAAAGGAGGCTTC+AGG | + | chr4_1:64572135-64572154 | Msa0564090:CDS | 60.0% | |
| ! | GCCGAGCAGCAGCTTTGACT+TGG | - | chr4_1:64572167-64572186 | None:intergenic | 60.0% |
| GTCAAAGCTGCTGCTCGGCA+CGG | + | chr4_1:64572168-64572187 | Msa0564090:CDS | 60.0% | |
| TCAAAGCTGCTGCTCGGCAC+GGG | + | chr4_1:64572169-64572188 | Msa0564090:CDS | 60.0% | |
| ! | CGGTGTCAGACACCGACGTC+AGG | + | chr4_1:64569890-64569909 | Msa0564090:intron | 65.0% |
| CACGTGCAGCCTGTTGCCGA+AGG | + | chr4_1:64571556-64571575 | Msa0564090:CDS | 65.0% | |
| CAAAGCTGCTGCTCGGCACG+GGG | + | chr4_1:64572170-64572189 | Msa0564090:CDS | 65.0% | |
| TCCTCATCAGCCGCTGCCGC+CGG | + | chr4_1:64569237-64569256 | Msa0564090:CDS | 70.0% | |
| ACCTCCTCCGCTTCCTCCGG+CGG | - | chr4_1:64569256-64569275 | None:intergenic | 70.0% | |
| CGGACCTCCTCCGCTTCCTC+CGG | - | chr4_1:64569259-64569278 | None:intergenic | 70.0% | |
| CGGAGGAAGCGGAGGAGGTC+CGG | + | chr4_1:64569257-64569276 | Msa0564090:CDS | 70.0% | |
| TCCGGCGGCAGCGGCTGATG+AGG | - | chr4_1:64569241-64569260 | None:intergenic | 75.0% | |
| TCATCAGCCGCTGCCGCCGG+AGG | + | chr4_1:64569240-64569259 | Msa0564090:CDS | 75.0% | |
| TCCGCTTCCTCCGGCGGCAG+CGG | - | chr4_1:64569250-64569269 | None:intergenic | 75.0% | |
| ! | GCCGCTGCCGCCGGAGGAAG+CGG | + | chr4_1:64569246-64569265 | Msa0564090:CDS | 80.0% |
| ! | GCTGCCGCCGGAGGAAGCGG+AGG | + | chr4_1:64569249-64569268 | Msa0564090:CDS | 80.0% |
| ! | GCCGCCGGAGGAAGCGGAGG+AGG | + | chr4_1:64569252-64569271 | Msa0564090:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64569111 | 64572659 | 64569111 | ID=Msa0564090;Name=Msa0564090 |
| chr4_1 | mRNA | 64569111 | 64572659 | 64569111 | ID=Msa0564090-mRNA-1;Parent=Msa0564090;Name=Msa0564090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|1|1|1|1|1|2|300|487 |
| chr4_1 | exon | 64569111 | 64569461 | 64569111 | ID=Msa0564090-mRNA-1:exon:20638;Parent=Msa0564090-mRNA-1 |
| chr4_1 | exon | 64571139 | 64572659 | 64571139 | ID=Msa0564090-mRNA-1:exon:20639;Parent=Msa0564090-mRNA-1 |
| chr4_1 | five_prime_UTR | 64569111 | 64569218 | 64569111 | ID=Msa0564090-mRNA-1:five_prime_utr;Parent=Msa0564090-mRNA-1 |
| chr4_1 | CDS | 64569219 | 64569461 | 64569219 | ID=Msa0564090-mRNA-1:cds;Parent=Msa0564090-mRNA-1 |
| chr4_1 | CDS | 64571139 | 64572359 | 64571139 | ID=Msa0564090-mRNA-1:cds;Parent=Msa0564090-mRNA-1 |
| chr4_1 | three_prime_UTR | 64572360 | 64572659 | 64572360 | ID=Msa0564090-mRNA-1:three_prime_utr;Parent=Msa0564090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
