AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600820 MtrunA17_Chr4g0025891 97.872 188 4 0 1 188 1 188 9.21e-134 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600820 AT2G27290.1 62.176 193 53 4 4 181 3 190 3.81e-63 194

Find 48 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGTCATTGTTGGGTACT+TGG 0.268842 4_2:+42816181 None:intergenic
AGCTATTGTTGACAATTATA+TGG 0.269803 4_2:+42814447 None:intergenic
TACTTCTTGGTTACTTCTTC+AGG 0.280999 4_2:+42815987 None:intergenic
ACAAAGCTGCATCTCCAATT+AGG 0.288679 4_2:-42814657 Msa0600820:CDS
TTGATTATCAAGATTGTATA+GGG 0.301442 4_2:+42816241 None:intergenic
ATCTTTCTTTCTTTCTCTGT+TGG 0.335428 4_2:-42816285 Msa0600820:five_prime_UTR
AGCTTCAAGACCATACTTCT+TGG 0.339383 4_2:+42815974 None:intergenic
ATGGTCTTGAAGCTGGTCTT+TGG 0.345812 4_2:-42815965 Msa0600820:CDS
GGAGATGAAAATATGATTAC+AGG 0.350066 4_2:+42814513 None:intergenic
TTTGATTATCAAGATTGTAT+AGG 0.354084 4_2:+42816240 None:intergenic
ACTGTGGGTGGAAACCTAAT+TGG 0.379765 4_2:+42814643 None:intergenic
CAATCCAACCAGCTACGATT+GGG 0.413841 4_2:+42814611 None:intergenic
AAAAGTCGGTACCTTTGCTT+TGG 0.429669 4_2:-42814692 Msa0600820:CDS
GAAGAAGTAACCAAGAAGTA+TGG 0.441811 4_2:-42815984 Msa0600820:CDS
ATTAGATTTACGTGACTGAA+TGG 0.446882 4_2:+42816082 None:intergenic
CCAATCCAACCAGCTACGAT+TGG 0.459512 4_2:+42814610 None:intergenic
TTCAGGTGAAGATTGCTTTG+AGG 0.462272 4_2:+42816004 None:intergenic
TGTTATGTATTAATCAATGC+TGG 0.464473 4_2:-42814866 Msa0600820:CDS
CCAATCGTAGCTGGTTGGAT+TGG 0.470086 4_2:-42814610 Msa0600820:CDS
ATTGCTATAATTGATTTGAA+TGG 0.483015 4_2:-42814385 Msa0600820:three_prime_UTR
CAGAGGAATATTGTTTCCAC+AGG 0.490873 4_2:-42814485 Msa0600820:three_prime_UTR
AAGAAGTATGGTCTTGAAGC+TGG 0.499317 4_2:-42815972 Msa0600820:CDS
TGTTCAAACTTTGCTTCAGA+AGG 0.506472 4_2:-42814837 Msa0600820:intron
GCTCTTACCCCAATCGTAGC+TGG 0.519207 4_2:-42814619 Msa0600820:CDS
GGGGAACAACAGAAATCAAA+AGG 0.520589 4_2:-42814974 Msa0600820:CDS
AAGGAGTTGCTAGCAAAATA+CGG 0.522146 4_2:-42814941 Msa0600820:CDS
CTGTGGAAACAATATTCCTC+TGG 0.528931 4_2:+42814486 None:intergenic
TAAAGATAAGTAGCTAATAG+TGG 0.534351 4_2:-42814575 Msa0600820:exon
TTACCCCAATCGTAGCTGGT+TGG 0.540207 4_2:-42814615 Msa0600820:CDS
TTTCAGTTCAAAGGAAGAAG+GGG 0.549822 4_2:-42814993 Msa0600820:CDS
AGAGATCAATGACAGAGTAA+TGG 0.554810 4_2:+42814898 None:intergenic
TCTTGAAGCTGGTCTTTGGA+AGG 0.564484 4_2:-42815961 Msa0600820:intron
GATTTACATGTCCACGCCTG+TGG 0.570885 4_2:+42814469 None:intergenic
GAATATTGTTTCCACAGGCG+TGG 0.574282 4_2:-42814480 Msa0600820:three_prime_UTR
AAACAATATTCCTCTGGCAA+TGG 0.578995 4_2:+42814492 None:intergenic
AAAGAAGCACAAGAAGGTGA+TGG 0.588002 4_2:+42816146 None:intergenic
CAATGACAGAGTAATGGAAG+TGG 0.589427 4_2:+42814904 None:intergenic
CTCAGAAAAGAAGCACAAGA+AGG 0.593610 4_2:+42816140 None:intergenic
ATCAAAAGGTGATCAAGCCA+AGG 0.614436 4_2:-42814960 Msa0600820:CDS
GGGGTAAGAGCTACTGTGGG+TGG 0.621082 4_2:+42814631 None:intergenic
GGAATCACTACTGATGCTAC+CGG 0.632753 4_2:-42814718 Msa0600820:CDS
TGCAGCATATGCCAAAGCAA+AGG 0.641846 4_2:+42814681 None:intergenic
GATTGGGGTAAGAGCTACTG+TGG 0.646696 4_2:+42814627 None:intergenic
AATCCAACCAGCTACGATTG+GGG 0.648062 4_2:+42814612 None:intergenic
ATTATACTACAATCAAACAC+TGG 0.651914 4_2:+42814540 None:intergenic
ATTGGGGTAAGAGCTACTGT+GGG 0.725389 4_2:+42814628 None:intergenic
AGCTGTTAAAGAGAAAACTG+AGG 0.740712 4_2:-42816039 Msa0600820:CDS
GAGTTGCTAGCAAAATACGG+AGG 0.770999 4_2:-42814938 Msa0600820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTCTAAAAAGTATATATAA+AGG - chr4_2:42814983-42815002 Msa0600820:CDS 15.0%
!!! GTTCTAAAAAGTATATATAA+AGG - chr4_2:42814983-42815002 Msa0600820:CDS 15.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_2:42814477-42814496 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_2:42814478-42814497 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_2:42814782-42814801 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_2:42814783-42814802 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_2:42814783-42814802 Msa0600820:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_2:42814802-42814821 Msa0600820:intron 20.0%
!!! ATTTAAAGCAATGAAAATGA+AGG + chr4_2:42814929-42814948 None:intergenic 20.0%
!! TATAAAGGATATTCAAAGAT+AGG - chr4_2:42814998-42815017 Msa0600820:CDS 20.0%
!!! TTGTTTACGAGTTTTATTTT+AGG - chr4_2:42815199-42815218 Msa0600820:intron 20.0%
!! TTCAAACTTCTACTTTAAAT+TGG + chr4_2:42815382-42815401 None:intergenic 20.0%
!!! GAAATATAAGTTGAGTTTTA+AGG - chr4_2:42815464-42815483 Msa0600820:intron 20.0%
!! TCTGTGTAAAATGAAAATTA+TGG - chr4_2:42815687-42815706 Msa0600820:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_2:42815922-42815941 None:intergenic 20.0%
!!! ATTGCTATAATTGATTTGAA+TGG - chr4_2:42816330-42816349 Msa0600820:five_prime_UTR 20.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_2:42814477-42814496 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_2:42814478-42814497 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_2:42814782-42814801 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_2:42814783-42814802 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_2:42814783-42814802 Msa0600820:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_2:42814802-42814821 Msa0600820:intron 20.0%
!!! ATTTAAAGCAATGAAAATGA+AGG + chr4_2:42814929-42814948 None:intergenic 20.0%
!! TATAAAGGATATTCAAAGAT+AGG - chr4_2:42814998-42815017 Msa0600820:CDS 20.0%
!!! TTGTTTACGAGTTTTATTTT+AGG - chr4_2:42815199-42815218 Msa0600820:intron 20.0%
!! TTCAAACTTCTACTTTAAAT+TGG + chr4_2:42815382-42815401 None:intergenic 20.0%
!!! GAAATATAAGTTGAGTTTTA+AGG - chr4_2:42815464-42815483 Msa0600820:intron 20.0%
!! TCTGTGTAAAATGAAAATTA+TGG - chr4_2:42815687-42815706 Msa0600820:intron 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_2:42815922-42815941 None:intergenic 20.0%
!!! ATTGCTATAATTGATTTGAA+TGG - chr4_2:42816330-42816349 Msa0600820:five_prime_UTR 20.0%
! AAAAGATGAATTTCTCACTT+AGG + chr4_2:42814854-42814873 None:intergenic 25.0%
!! AAGTGAGAAATTCATCTTTT+TGG - chr4_2:42814854-42814873 Msa0600820:CDS 25.0%
!! AGTGAGAAATTCATCTTTTT+GGG - chr4_2:42814855-42814874 Msa0600820:CDS 25.0%
!! ATTTTATTGCTGAAATTTGC+AGG - chr4_2:42815021-42815040 Msa0600820:intron 25.0%
!! TTTTATTGCTGAAATTTGCA+GGG - chr4_2:42815022-42815041 Msa0600820:intron 25.0%
!!! TAGGTTTTATTTCCATTTCT+TGG - chr4_2:42815218-42815237 Msa0600820:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_2:42815610-42815629 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_2:42815849-42815868 Msa0600820:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_2:42815923-42815942 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_2:42816140-42816159 Msa0600820:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_2:42816178-42816197 None:intergenic 25.0%
! AGCTATTGTTGACAATTATA+TGG + chr4_2:42816271-42816290 None:intergenic 25.0%
!!! CTATAATTGATTTGAATGGT+TGG - chr4_2:42816334-42816353 Msa0600820:five_prime_UTR 25.0%
! AAAAGATGAATTTCTCACTT+AGG + chr4_2:42814854-42814873 None:intergenic 25.0%
!! AAGTGAGAAATTCATCTTTT+TGG - chr4_2:42814854-42814873 Msa0600820:CDS 25.0%
!! AGTGAGAAATTCATCTTTTT+GGG - chr4_2:42814855-42814874 Msa0600820:CDS 25.0%
!! ATTTTATTGCTGAAATTTGC+AGG - chr4_2:42815021-42815040 Msa0600820:intron 25.0%
!! TTTTATTGCTGAAATTTGCA+GGG - chr4_2:42815022-42815041 Msa0600820:intron 25.0%
!!! TAGGTTTTATTTCCATTTCT+TGG - chr4_2:42815218-42815237 Msa0600820:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_2:42815610-42815629 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_2:42815849-42815868 Msa0600820:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_2:42815923-42815942 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_2:42816140-42816159 Msa0600820:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_2:42816178-42816197 None:intergenic 25.0%
! AGCTATTGTTGACAATTATA+TGG + chr4_2:42816271-42816290 None:intergenic 25.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_2:42814430-42814449 Msa0600820:three_prime_UTR 30.0%
ACAAAAACGTTGTCATTGTT+GGG + chr4_2:42814544-42814563 None:intergenic 30.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_2:42814545-42814564 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_2:42814636-42814655 None:intergenic 30.0%
! TTTTCTTGTCATGTAGAACT+TGG - chr4_2:42815112-42815131 Msa0600820:intron 30.0%
TTTCTTGTCATGTAGAACTT+GGG - chr4_2:42815113-42815132 Msa0600820:intron 30.0%
! TGTATCTTTCCCTGATTTTA+GGG - chr4_2:42815251-42815270 Msa0600820:intron 30.0%
TATCTCAGCAGTAAAATTGT+CGG + chr4_2:42815408-42815427 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_2:42815560-42815579 Msa0600820:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_2:42815561-42815580 Msa0600820:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_2:42815713-42815732 Msa0600820:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_2:42815720-42815739 Msa0600820:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_2:42815721-42815740 Msa0600820:intron 30.0%
ATTTATGTCTGTATATCTGC+AGG - chr4_2:42815972-42815991 Msa0600820:CDS 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_2:42816205-42816224 None:intergenic 30.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_2:42814430-42814449 Msa0600820:three_prime_UTR 30.0%
ACAAAAACGTTGTCATTGTT+GGG + chr4_2:42814544-42814563 None:intergenic 30.0%
AACAAAAACGTTGTCATTGT+TGG + chr4_2:42814545-42814564 None:intergenic 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_2:42814636-42814655 None:intergenic 30.0%
! TTTTCTTGTCATGTAGAACT+TGG - chr4_2:42815112-42815131 Msa0600820:intron 30.0%
TTTCTTGTCATGTAGAACTT+GGG - chr4_2:42815113-42815132 Msa0600820:intron 30.0%
! TGTATCTTTCCCTGATTTTA+GGG - chr4_2:42815251-42815270 Msa0600820:intron 30.0%
TATCTCAGCAGTAAAATTGT+CGG + chr4_2:42815408-42815427 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_2:42815560-42815579 Msa0600820:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_2:42815561-42815580 Msa0600820:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_2:42815713-42815732 Msa0600820:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_2:42815720-42815739 Msa0600820:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_2:42815721-42815740 Msa0600820:intron 30.0%
ATTTATGTCTGTATATCTGC+AGG - chr4_2:42815972-42815991 Msa0600820:CDS 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_2:42816205-42816224 None:intergenic 30.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_2:42814676-42814695 Msa0600820:CDS 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_2:42814731-42814750 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_2:42814731-42814750 Msa0600820:intron 35.0%
CAGTATGCTAAACCAAGAAA+TGG + chr4_2:42815233-42815252 None:intergenic 35.0%
! CTGTATCTTTCCCTGATTTT+AGG - chr4_2:42815250-42815269 Msa0600820:intron 35.0%
! GTATCTTTCCCTGATTTTAG+GGG - chr4_2:42815252-42815271 Msa0600820:intron 35.0%
! ATTTTGCTCCCCTAAAATCA+GGG + chr4_2:42815263-42815282 None:intergenic 35.0%
! TATTTTGCTCCCCTAAAATC+AGG + chr4_2:42815264-42815283 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_2:42815308-42815327 None:intergenic 35.0%
CATTAAAACGATAACCCAAC+TGG + chr4_2:42815526-42815545 None:intergenic 35.0%
! CAGTTGGGTTATCGTTTTAA+TGG - chr4_2:42815524-42815543 Msa0600820:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_2:42815546-42815565 Msa0600820:intron 35.0%
! AAAGCACGTCTTTGACTTTA+GGG + chr4_2:42815663-42815682 None:intergenic 35.0%
! AAAAGCACGTCTTTGACTTT+AGG + chr4_2:42815664-42815683 None:intergenic 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_2:42815722-42815741 Msa0600820:intron 35.0%
AAGGAGTTGCTAGCAAAATA+CGG - chr4_2:42815774-42815793 Msa0600820:intron 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_2:42815820-42815839 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_2:42815878-42815897 Msa0600820:intron 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_2:42816226-42816245 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_2:42814676-42814695 Msa0600820:CDS 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_2:42814731-42814750 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_2:42814731-42814750 Msa0600820:intron 35.0%
CAGTATGCTAAACCAAGAAA+TGG + chr4_2:42815233-42815252 None:intergenic 35.0%
! CTGTATCTTTCCCTGATTTT+AGG - chr4_2:42815250-42815269 Msa0600820:intron 35.0%
! GTATCTTTCCCTGATTTTAG+GGG - chr4_2:42815252-42815271 Msa0600820:intron 35.0%
! ATTTTGCTCCCCTAAAATCA+GGG + chr4_2:42815263-42815282 None:intergenic 35.0%
! TATTTTGCTCCCCTAAAATC+AGG + chr4_2:42815264-42815283 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_2:42815308-42815327 None:intergenic 35.0%
CATTAAAACGATAACCCAAC+TGG + chr4_2:42815526-42815545 None:intergenic 35.0%
! CAGTTGGGTTATCGTTTTAA+TGG - chr4_2:42815524-42815543 Msa0600820:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_2:42815546-42815565 Msa0600820:intron 35.0%
! AAAGCACGTCTTTGACTTTA+GGG + chr4_2:42815663-42815682 None:intergenic 35.0%
! AAAAGCACGTCTTTGACTTT+AGG + chr4_2:42815664-42815683 None:intergenic 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_2:42815722-42815741 Msa0600820:intron 35.0%
AAGGAGTTGCTAGCAAAATA+CGG - chr4_2:42815774-42815793 Msa0600820:intron 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_2:42815820-42815839 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_2:42815878-42815897 Msa0600820:intron 35.0%
AAACAATATTCCTCTGGCAA+TGG + chr4_2:42816226-42816245 None:intergenic 35.0%
! AAAGAAGCACAAGAAGGTGA+TGG + chr4_2:42814572-42814591 None:intergenic 40.0%
! CTCAGAAAAGAAGCACAAGA+AGG + chr4_2:42814578-42814597 None:intergenic 40.0%
TTCAGGTGAAGATTGCTTTG+AGG + chr4_2:42814714-42814733 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_2:42814744-42814763 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_2:42814743-42814762 Msa0600820:intron 40.0%
TTGCTGAAATTTGCAGGGAA+AGG - chr4_2:42815027-42815046 Msa0600820:intron 40.0%
GGGAGCAAAATATGTGTTGT+GGG - chr4_2:42815272-42815291 Msa0600820:intron 40.0%
CGGAATCGATATGCAAACAT+TGG + chr4_2:42815346-42815365 None:intergenic 40.0%
AAATTGGCGACACAAGTAGT+CGG + chr4_2:42815366-42815385 None:intergenic 40.0%
GGTTGAGTCGACAAAAATCA+AGG + chr4_2:42815505-42815524 None:intergenic 40.0%
!!! TTTTTGTCGACTCAACCAGT+TGG - chr4_2:42815508-42815527 Msa0600820:intron 40.0%
!!! TTTTGTCGACTCAACCAGTT+GGG - chr4_2:42815509-42815528 Msa0600820:intron 40.0%
!! GGGTTATCGTTTTAATGGAG+AGG - chr4_2:42815529-42815548 Msa0600820:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_2:42815545-42815564 Msa0600820:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_2:42815741-42815760 Msa0600820:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_2:42815755-42815774 Msa0600820:intron 40.0%
! GTATTTTGCTAGCAACTCCT+TGG + chr4_2:42815775-42815794 None:intergenic 40.0%
! CAATGACAGAGTAATGGAAG+TGG + chr4_2:42815814-42815833 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_2:42815906-42815925 Msa0600820:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_2:42815976-42815995 Msa0600820:CDS 40.0%
!!! AAAGGTACCGACTTTTTCAC+CGG + chr4_2:42816019-42816038 None:intergenic 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_2:42816023-42816042 Msa0600820:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_2:42816058-42816077 Msa0600820:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_2:42816213-42816232 Msa0600820:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_2:42816232-42816251 None:intergenic 40.0%
CAGAGGAATATTGTTTCCAC+AGG - chr4_2:42816230-42816249 Msa0600820:five_prime_UTR 40.0%
! AAAGAAGCACAAGAAGGTGA+TGG + chr4_2:42814572-42814591 None:intergenic 40.0%
! CTCAGAAAAGAAGCACAAGA+AGG + chr4_2:42814578-42814597 None:intergenic 40.0%
TTCAGGTGAAGATTGCTTTG+AGG + chr4_2:42814714-42814733 None:intergenic 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_2:42814744-42814763 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_2:42814743-42814762 Msa0600820:intron 40.0%
TTGCTGAAATTTGCAGGGAA+AGG - chr4_2:42815027-42815046 Msa0600820:intron 40.0%
GGGAGCAAAATATGTGTTGT+GGG - chr4_2:42815272-42815291 Msa0600820:intron 40.0%
CGGAATCGATATGCAAACAT+TGG + chr4_2:42815346-42815365 None:intergenic 40.0%
AAATTGGCGACACAAGTAGT+CGG + chr4_2:42815366-42815385 None:intergenic 40.0%
GGTTGAGTCGACAAAAATCA+AGG + chr4_2:42815505-42815524 None:intergenic 40.0%
!!! TTTTTGTCGACTCAACCAGT+TGG - chr4_2:42815508-42815527 Msa0600820:intron 40.0%
!!! TTTTGTCGACTCAACCAGTT+GGG - chr4_2:42815509-42815528 Msa0600820:intron 40.0%
!! GGGTTATCGTTTTAATGGAG+AGG - chr4_2:42815529-42815548 Msa0600820:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_2:42815545-42815564 Msa0600820:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_2:42815741-42815760 Msa0600820:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_2:42815755-42815774 Msa0600820:intron 40.0%
! GTATTTTGCTAGCAACTCCT+TGG + chr4_2:42815775-42815794 None:intergenic 40.0%
! CAATGACAGAGTAATGGAAG+TGG + chr4_2:42815814-42815833 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_2:42815906-42815925 Msa0600820:intron 40.0%
ATGTCTGTATATCTGCAGGT+AGG - chr4_2:42815976-42815995 Msa0600820:CDS 40.0%
!!! AAAGGTACCGACTTTTTCAC+CGG + chr4_2:42816019-42816038 None:intergenic 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_2:42816023-42816042 Msa0600820:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_2:42816058-42816077 Msa0600820:CDS 40.0%
! ATTTTCATCTCCATTGCCAG+AGG - chr4_2:42816213-42816232 Msa0600820:five_prime_UTR 40.0%
CTGTGGAAACAATATTCCTC+TGG + chr4_2:42816232-42816251 None:intergenic 40.0%
CAGAGGAATATTGTTTCCAC+AGG - chr4_2:42816230-42816249 Msa0600820:five_prime_UTR 40.0%
CGTTGTCATTGTTGGGTACT+TGG + chr4_2:42814537-42814556 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_2:42814750-42814769 Msa0600820:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_2:42814754-42814773 Msa0600820:intron 45.0%
GGGGAGCAAAATATGTGTTG+TGG - chr4_2:42815271-42815290 Msa0600820:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_2:42815577-42815596 Msa0600820:intron 45.0%
!! ACGTCTTTGACTTTAGGGTG+AGG + chr4_2:42815658-42815677 None:intergenic 45.0%
GAGTTGCTAGCAAAATACGG+AGG - chr4_2:42815777-42815796 Msa0600820:intron 45.0%
GGAATCACTACTGATGCTAC+CGG - chr4_2:42815997-42816016 Msa0600820:CDS 45.0%
GATGCTACCGGTGAAAAAGT+CGG - chr4_2:42816009-42816028 Msa0600820:CDS 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_2:42816037-42816056 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_2:42816075-42816094 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_2:42816090-42816109 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_2:42816106-42816125 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_2:42816107-42816126 None:intergenic 45.0%
GAATATTGTTTCCACAGGCG+TGG - chr4_2:42816235-42816254 Msa0600820:five_prime_UTR 45.0%
CGTTGTCATTGTTGGGTACT+TGG + chr4_2:42814537-42814556 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_2:42814750-42814769 Msa0600820:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_2:42814754-42814773 Msa0600820:intron 45.0%
GGGGAGCAAAATATGTGTTG+TGG - chr4_2:42815271-42815290 Msa0600820:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_2:42815577-42815596 Msa0600820:intron 45.0%
!! ACGTCTTTGACTTTAGGGTG+AGG + chr4_2:42815658-42815677 None:intergenic 45.0%
GAGTTGCTAGCAAAATACGG+AGG - chr4_2:42815777-42815796 Msa0600820:intron 45.0%
GGAATCACTACTGATGCTAC+CGG - chr4_2:42815997-42816016 Msa0600820:CDS 45.0%
GATGCTACCGGTGAAAAAGT+CGG - chr4_2:42816009-42816028 Msa0600820:CDS 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_2:42816037-42816056 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_2:42816075-42816094 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_2:42816090-42816109 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_2:42816106-42816125 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_2:42816107-42816126 None:intergenic 45.0%
GAATATTGTTTCCACAGGCG+TGG - chr4_2:42816235-42816254 Msa0600820:five_prime_UTR 45.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_2:42816091-42816110 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_2:42816100-42816119 Msa0600820:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_2:42816108-42816127 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_2:42816105-42816124 Msa0600820:CDS 50.0%
GATTTACATGTCCACGCCTG+TGG + chr4_2:42816249-42816268 None:intergenic 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_2:42816091-42816110 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_2:42816100-42816119 Msa0600820:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_2:42816108-42816127 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_2:42816105-42816124 Msa0600820:CDS 50.0%
GATTTACATGTCCACGCCTG+TGG + chr4_2:42816249-42816268 None:intergenic 50.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_2:42816096-42816115 Msa0600820:CDS 55.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_2:42816096-42816115 Msa0600820:CDS 55.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_2:42816087-42816106 None:intergenic 60.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_2:42816087-42816106 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 42814382 42816355 42814382 ID=Msa0600820;Name=Msa0600820
chr4_2 mRNA 42814382 42816355 42814382 ID=Msa0600820-mRNA-1;Parent=Msa0600820;Name=Msa0600820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=166|1|1|1|1|1|3|203|188
chr4_2 exon 42814382 42814743 42814382 ID=Msa0600820-mRNA-1:exon:9333;Parent=Msa0600820-mRNA-1
chr4_2 exon 42814838 42815017 42814838 ID=Msa0600820-mRNA-1:exon:9332;Parent=Msa0600820-mRNA-1
chr4_2 exon 42815962 42816355 42815962 ID=Msa0600820-mRNA-1:exon:9331;Parent=Msa0600820-mRNA-1
chr4_2 five_prime_UTR 42816190 42816355 42816190 ID=Msa0600820-mRNA-1:five_prime_utr;Parent=Msa0600820-mRNA-1
chr4_2 CDS 42815962 42816189 42815962 ID=Msa0600820-mRNA-1:cds;Parent=Msa0600820-mRNA-1
chr4_2 CDS 42814838 42815017 42814838 ID=Msa0600820-mRNA-1:cds;Parent=Msa0600820-mRNA-1
chr4_2 CDS 42814585 42814743 42814585 ID=Msa0600820-mRNA-1:cds;Parent=Msa0600820-mRNA-1
chr4_2 three_prime_UTR 42814382 42814584 42814382 ID=Msa0600820-mRNA-1:three_prime_utr;Parent=Msa0600820-mRNA-1
Gene Sequence

>Msa0600820

ATGACAACGTTTTTGTTGCTACCATCACCTTCTTGTGCTTCTTTTCTGAGCAACAAGAAGAGTTCAAGATTTTGCAGTCTTGCTTCCATTCAGTCACGTAAATCTAATGTTAAAGTGTTCAGAGTTAGAGCTGTTAAAGAGAAAACTGAGGAAATTAAAAGCTCCTCAAAGCAATCTTCACCTGAAGAAGTAACCAAGAAGTATGGTCTTGAAGCTGGTCTTTGGAAGATTTTCAGTTCAAAGGAAGAAGGGGAACAACAGAAATCAAAAGGTGATCAAGCCAAGGAGTTGCTAGCAAAATACGGAGGAGCATACTTAGCCACTTCCATTACTCTGTCATTGATCTCTTTCGCTCTTTGTTATGTATTAATCAATGCTGGAGTAGATGTTCAAACTTTGCTTCAGAAGGTAGGAATCACTACTGATGCTACCGGTGAAAAAGTCGGTACCTTTGCTTTGGCATATGCTGCACACAAAGCTGCATCTCCAATTAGGTTTCCACCCACAGTAGCTCTTACCCCAATCGTAGCTGGTTGGATTGGAAAGAAAGCTGATAAAGATAAGTAG

Protein sequence

>Msa0600820

MTTFLLLPSPSCASFLSNKKSSRFCSLASIQSRKSNVKVFRVRAVKEKTEEIKSSSKQSSPEEVTKKYGLEAGLWKIFSSKEEGEQQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQKVGITTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKADKDK*