Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411140 | sp|Q41015|PIP21_PEA | 41.085 | 129 | 60 | 7 | 168 | 287 | 85 | 206 | 3.71e-17 | 81.6 |
| Msa1411140 | sp|Q41015|PIP21_PEA | 35.503 | 169 | 82 | 9 | 4 | 152 | 29 | 190 | 4.31e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411140 | A0A072U8L7 | 38.235 | 136 | 72 | 6 | 161 | 288 | 77 | 208 | 9.47e-12 | 73.9 |
| Msa1411140 | A0A072U8L7 | 44.970 | 169 | 68 | 6 | 6 | 155 | 31 | 193 | 2.15e-32 | 129 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0163340 | Msa1411140 | 0.816747 | 4.715650e-52 | -8.615850e-47 |
| Msa1323120 | Msa1411140 | 0.803913 | 2.778481e-49 | -8.615850e-47 |
| Msa0913550 | Msa1411140 | 0.812716 | 3.684971e-51 | -8.615850e-47 |
| Msa0920400 | Msa1411140 | 0.918627 | 1.233985e-86 | -8.615850e-47 |
| Msa0951150 | Msa1411140 | 0.805091 | 1.578168e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411140 | MtrunA17_Chr6g0467761 | 44.970 | 169 | 68 | 6 | 6 | 155 | 31 | 193 | 4.14e-36 | 129 |
| Msa1411140 | MtrunA17_Chr6g0467761 | 38.235 | 136 | 72 | 6 | 161 | 288 | 77 | 208 | 1.82e-15 | 73.9 |
| Msa1411140 | MtrunA17_Chr6g0467621 | 47.337 | 169 | 64 | 7 | 6 | 155 | 31 | 193 | 1.37e-35 | 127 |
| Msa1411140 | MtrunA17_Chr6g0467621 | 35.556 | 135 | 77 | 5 | 161 | 288 | 77 | 208 | 2.33e-13 | 67.8 |
| Msa1411140 | MtrunA17_Chr6g0467611 | 44.970 | 169 | 68 | 6 | 6 | 155 | 31 | 193 | 5.47e-35 | 126 |
| Msa1411140 | MtrunA17_Chr6g0467611 | 38.235 | 136 | 72 | 6 | 161 | 288 | 77 | 208 | 5.14e-16 | 75.5 |
| Msa1411140 | MtrunA17_Chr6g0467771 | 45.562 | 169 | 69 | 6 | 6 | 156 | 30 | 193 | 7.78e-35 | 125 |
| Msa1411140 | MtrunA17_Chr6g0467771 | 38.519 | 135 | 72 | 5 | 161 | 288 | 76 | 206 | 8.88e-16 | 74.7 |
| Msa1411140 | MtrunA17_Chr6g0476921 | 46.617 | 133 | 60 | 5 | 161 | 286 | 74 | 202 | 2.79e-26 | 102 |
| Msa1411140 | MtrunA17_Chr6g0476921 | 37.356 | 174 | 87 | 7 | 1 | 156 | 22 | 191 | 1.99e-21 | 89.7 |
| Msa1411140 | MtrunA17_Chr6g0467781 | 39.610 | 154 | 70 | 6 | 15 | 154 | 2 | 146 | 2.94e-22 | 91.3 |
| Msa1411140 | MtrunA17_Chr6g0467781 | 37.500 | 136 | 70 | 6 | 161 | 288 | 36 | 164 | 2.58e-16 | 75.1 |
| Msa1411140 | MtrunA17_Chr6g0476961 | 44.928 | 138 | 66 | 5 | 153 | 288 | 67 | 196 | 9.36e-22 | 90.5 |
| Msa1411140 | MtrunA17_Chr6g0476951 | 44.203 | 138 | 67 | 5 | 153 | 288 | 68 | 197 | 2.92e-21 | 89.4 |
| Msa1411140 | MtrunA17_Chr6g0476821 | 46.087 | 115 | 55 | 4 | 180 | 288 | 24 | 137 | 6.18e-20 | 84.0 |
| Msa1411140 | MtrunA17_Chr3g0104591 | 40.426 | 141 | 72 | 6 | 153 | 288 | 72 | 205 | 6.55e-19 | 83.2 |
| Msa1411140 | MtrunA17_Chr6g0476871 | 42.636 | 129 | 57 | 7 | 168 | 285 | 85 | 207 | 5.93e-17 | 77.8 |
| Msa1411140 | MtrunA17_Chr6g0476831 | 40.476 | 126 | 61 | 7 | 168 | 285 | 84 | 203 | 9.86e-15 | 72.0 |
| Msa1411140 | MtrunA17_Chr6g0476791 | 33.594 | 128 | 69 | 4 | 4 | 118 | 32 | 156 | 2.64e-14 | 70.5 |
| Msa1411140 | MtrunA17_Chr6g0452491 | 37.692 | 130 | 65 | 6 | 168 | 287 | 80 | 203 | 6.97e-13 | 66.2 |
| Msa1411140 | MtrunA17_Chr6g0477741 | 36.434 | 129 | 66 | 6 | 168 | 286 | 80 | 202 | 1.89e-12 | 65.5 |
| Msa1411140 | MtrunA17_Chr6g0477741 | 29.412 | 170 | 93 | 8 | 5 | 154 | 27 | 189 | 5.64e-11 | 61.2 |
| Msa1411140 | MtrunA17_Chr6g0477281 | 40.870 | 115 | 55 | 4 | 3 | 105 | 26 | 139 | 4.19e-12 | 63.5 |
| Msa1411140 | MtrunA17_Chr6g0452521 | 36.923 | 130 | 66 | 6 | 168 | 287 | 113 | 236 | 4.82e-12 | 64.7 |
| Msa1411140 | MtrunA17_Chr6g0452521 | 30.588 | 170 | 89 | 9 | 4 | 152 | 59 | 220 | 4.68e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACGGTTGGTTTGAATTT+TGG | 0.103371 | tig0023721:-61968 | Msa1411140:CDS |
| GGAAATACAACTTGTCATTT+TGG | 0.186647 | tig0023721:-62227 | Msa1411140:CDS |
| ATGGAATGCGTTTGGTCTTT+AGG | 0.190743 | tig0023721:-61866 | Msa1411140:CDS |
| ATATCAGATGTGCTTGTTTC+TGG | 0.235465 | tig0023721:+59701 | None:intergenic |
| CTAGTAAAAGATATTATATT+TGG | 0.239098 | tig0023721:-62295 | Msa1411140:CDS |
| TGGAATGCGTTTGGTCTTTA+GGG | 0.240629 | tig0023721:-61865 | Msa1411140:CDS |
| TGGCCAAATTACTTCGAAAA+AGG | 0.247542 | tig0023721:-62275 | Msa1411140:CDS |
| CCTGGTACTTGTTTAGATAT+TGG | 0.264094 | tig0023721:-59470 | Msa1411140:CDS |
| TGGATACTTGACACTGGATA+TGG | 0.314095 | tig0023721:-61948 | Msa1411140:CDS |
| GAGAAACATGGTGAACGTTT+TGG | 0.315334 | tig0023721:-59530 | Msa1411140:CDS |
| GAGAGGAATAATGAAGAAAA+TGG | 0.316641 | tig0023721:-61885 | Msa1411140:CDS |
| CTATGGAGGTCTGATGATTA+TGG | 0.331480 | tig0023721:-61988 | Msa1411140:CDS |
| GGAAGAGCTGATGATGAAAA+TGG | 0.331706 | tig0023721:-59449 | Msa1411140:CDS |
| GAAATCGTGAAGGATGTAAA+TGG | 0.355711 | tig0023721:-62332 | Msa1411140:CDS |
| ATATTTATAACCATACAAAA+TGG | 0.355794 | tig0023721:-62037 | Msa1411140:CDS |
| GGATGATGGTAGATACAGTA+TGG | 0.421402 | tig0023721:-59610 | Msa1411140:CDS |
| ACAGTATGGATTGGTATTGT+TGG | 0.430045 | tig0023721:-59596 | Msa1411140:CDS |
| TGAAGAAAATGGAATGCGTT+TGG | 0.442958 | tig0023721:-61874 | Msa1411140:CDS |
| GAAGTAAGCCTTGGTAAAAC+AGG | 0.463629 | tig0023721:-62248 | Msa1411140:CDS |
| GACACTAGGCATATTGAAGA+TGG | 0.471700 | tig0023721:-59566 | Msa1411140:CDS |
| CCAGGTGGATAAATGTTGAA+TGG | 0.475739 | tig0023721:+59488 | None:intergenic |
| TTTCAAGACTATGATATCTC+TGG | 0.478293 | tig0023721:-62200 | Msa1411140:CDS |
| GTCTGATGATTATGGACGGT+TGG | 0.484677 | tig0023721:-61980 | Msa1411140:CDS |
| TAATTTATTACCAGTAGAGA+TGG | 0.493482 | tig0023721:+62124 | None:intergenic |
| ACAAAATGGTTGGCAGTTGA+TGG | 0.495894 | tig0023721:-62023 | Msa1411140:CDS |
| TATGATATCTCTGGTGGTGT+TGG | 0.504084 | tig0023721:-62191 | Msa1411140:CDS |
| CAGGTGGATAAATGTTGAAT+GGG | 0.513796 | tig0023721:+59489 | None:intergenic |
| TTTAATACATTAAATAATGT+CGG | 0.519033 | tig0023721:-61918 | Msa1411140:CDS |
| TCAGATGTGCTTGTTTCTGG+TGG | 0.526516 | tig0023721:+59704 | None:intergenic |
| CCATTCAACATTTATCCACC+TGG | 0.530864 | tig0023721:-59488 | Msa1411140:CDS |
| TTTAACCACCACCCACTTGG+AGG | 0.539154 | tig0023721:+62064 | None:intergenic |
| TTATAACCATACAAAATGGT+TGG | 0.544280 | tig0023721:-62033 | Msa1411140:CDS |
| ATGGTAGATACAGTATGGAT+TGG | 0.549778 | tig0023721:-59605 | Msa1411140:CDS |
| ATTAAGAAATGCAACTTCAA+AGG | 0.554125 | tig0023721:+59391 | None:intergenic |
| CCAATATCTAAACAAGTACC+AGG | 0.559689 | tig0023721:+59470 | None:intergenic |
| TGATGAAAATGGAAAACGTC+TGG | 0.561721 | tig0023721:-59438 | Msa1411140:CDS |
| GCCGACGATCCCATCTCTAC+TGG | 0.575649 | tig0023721:-62134 | Msa1411140:intron |
| AATTTATTACCAGTAGAGAT+GGG | 0.575873 | tig0023721:+62125 | None:intergenic |
| ATGTCGGTTCTTATATTGAG+AGG | 0.581925 | tig0023721:-61902 | Msa1411140:CDS |
| TGTATCTACCATCATCCACT+TGG | 0.583496 | tig0023721:+59616 | None:intergenic |
| AGAATCCTCCAAGTGGGTGG+TGG | 0.584192 | tig0023721:-62069 | Msa1411140:CDS |
| AAGTTTAAAATTGAGAAACA+TGG | 0.588103 | tig0023721:-59542 | Msa1411140:CDS |
| ACACTAGGCATATTGAAGAT+GGG | 0.591772 | tig0023721:-59565 | Msa1411140:CDS |
| AAAGGCGGTGAAGTAAGCCT+TGG | 0.593611 | tig0023721:-62257 | Msa1411140:CDS |
| TGATATGATCTACACAGGCA+TGG | 0.605903 | tig0023721:-59684 | Msa1411140:CDS |
| TGAATCTTCCAAGTGGATGA+TGG | 0.609146 | tig0023721:-59624 | Msa1411140:CDS |
| CAGATGTGCTTGTTTCTGGT+GGG | 0.616314 | tig0023721:+59705 | None:intergenic |
| CAAGACTATGATATCTCTGG+TGG | 0.621558 | tig0023721:-62197 | Msa1411140:CDS |
| ACCAGTAGAGATGGGATCGT+CGG | 0.626036 | tig0023721:+62133 | None:intergenic |
| TTGTTGGTATTAATGACACT+AGG | 0.632962 | tig0023721:-59580 | Msa1411140:CDS |
| TCGTCGGCGCTTGTATCTCG+TGG | 0.638925 | tig0023721:+62149 | None:intergenic |
| CTGCAAGAATATACTTACAC+CGG | 0.643039 | tig0023721:-59752 | Msa1411140:intron |
| ACAAGTTGCTGAAATCGTGA+AGG | 0.644379 | tig0023721:-62342 | Msa1411140:intron |
| ACATCTGATATGATCTACAC+AGG | 0.653057 | tig0023721:-59689 | Msa1411140:CDS |
| GTGTGCAGAATCCTCCAAGT+GGG | 0.661463 | tig0023721:-62075 | Msa1411140:CDS |
| TGCAGAATCCTCCAAGTGGG+TGG | 0.669247 | tig0023721:-62072 | Msa1411140:CDS |
| GGAGGTCTGATGATTATGGA+CGG | 0.701305 | tig0023721:-61984 | Msa1411140:CDS |
| ATATCTAAACAAGTACCAGG+TGG | 0.709715 | tig0023721:+59473 | None:intergenic |
| AGTGTGCAGAATCCTCCAAG+TGG | 0.712837 | tig0023721:-62076 | Msa1411140:CDS |
| AGTGTGCTGAATCTTCCAAG+TGG | 0.718674 | tig0023721:-59631 | Msa1411140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | tig0023721:60735-60754 | Msa1411140:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | tig0023721:60734-60753 | Msa1411140:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | tig0023721:60735-60754 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | tig0023721:60734-60753 | None:intergenic | 0.0% |
| !! | TTTAATACATTAAATAATGT+CGG | - | tig0023721:59959-59978 | Msa1411140:intron | 10.0% |
| !!! | CAAATATAATATCTTTTACT+AGG | + | tig0023721:59584-59603 | None:intergenic | 15.0% |
| !! | CTAGTAAAAGATATTATATT+TGG | - | tig0023721:59582-59601 | Msa1411140:CDS | 15.0% |
| !! | ATATTTATAACCATACAAAA+TGG | - | tig0023721:59840-59859 | Msa1411140:intron | 15.0% |
| !!! | CTTGCTTTTTTTTTTTTATA+TGG | - | tig0023721:60181-60200 | Msa1411140:intron | 15.0% |
| !! | TATATATATATATATAGGGA+TGG | - | tig0023721:60787-60806 | Msa1411140:intron | 15.0% |
| !! | ATATATATATATATAGGGAT+GGG | - | tig0023721:60788-60807 | Msa1411140:intron | 15.0% |
| !!! | TTACCATTATTTTTTATACA+AGG | + | tig0023721:61184-61203 | None:intergenic | 15.0% |
| !! | AAGAAAATAATAAACTAAGT+TGG | + | tig0023721:61734-61753 | None:intergenic | 15.0% |
| !!! | TATTTGTTTTGCAATCTTTA+CGG | + | tig0023721:59392-59411 | None:intergenic | 20.0% |
| !!! | TACCTCCATATTTTTTAAAT+GGG | - | tig0023721:60220-60239 | Msa1411140:intron | 20.0% |
| !! | ATTTGCCCATTTAAAAAATA+TGG | + | tig0023721:60228-60247 | None:intergenic | 20.0% |
| !! | AAATTATTAGGAAAAAGATG+AGG | + | tig0023721:60498-60517 | None:intergenic | 20.0% |
| !!! | TCCTATATAGTTTGATTTAA+TGG | + | tig0023721:61123-61142 | None:intergenic | 20.0% |
| !! | TATACAAGGTTCAAATATAA+TGG | + | tig0023721:61170-61189 | None:intergenic | 20.0% |
| !! | GAACCTTGTATAAAAAATAA+TGG | - | tig0023721:61178-61197 | Msa1411140:intron | 20.0% |
| !!! | CTTTTTATATCCTTAGTTTT+GGG | + | tig0023721:61430-61449 | None:intergenic | 20.0% |
| !!! | TATAAAAAGCTTTTTGAAAG+TGG | - | tig0023721:61441-61460 | Msa1411140:intron | 20.0% |
| !!! | AAAGAAAAAAGTGTTTCTTA+GGG | + | tig0023721:61519-61538 | None:intergenic | 20.0% |
| !!! | CATAAAACTTTATTTATCTC+CGG | + | tig0023721:61598-61617 | None:intergenic | 20.0% |
| !! | TTAATGTATGTTTATGTACT+TGG | + | tig0023721:61870-61889 | None:intergenic | 20.0% |
| !!! | AAGTTTAAAATTGAGAAACA+TGG | - | tig0023721:62335-62354 | Msa1411140:CDS | 20.0% |
| !! | TATCTTTTACTAGGAACAAT+GGG | + | tig0023721:59575-59594 | None:intergenic | 25.0% |
| !! | ATATCTTTTACTAGGAACAA+TGG | + | tig0023721:59576-59595 | None:intergenic | 25.0% |
| !! | ATCTCGTGGTATAAATTTTA+CGG | + | tig0023721:59717-59736 | None:intergenic | 25.0% |
| ! | AATTTATTACCAGTAGAGAT+GGG | + | tig0023721:59755-59774 | None:intergenic | 25.0% |
| ! | TAATTTATTACCAGTAGAGA+TGG | + | tig0023721:59756-59775 | None:intergenic | 25.0% |
| ! | TTATAACCATACAAAATGGT+TGG | - | tig0023721:59844-59863 | Msa1411140:intron | 25.0% |
| ! | TCAACAAATACCATTCTAAA+GGG | + | tig0023721:60058-60077 | None:intergenic | 25.0% |
| ! | ATCAACAAATACCATTCTAA+AGG | + | tig0023721:60059-60078 | None:intergenic | 25.0% |
| ! | AGAAAAAAAGCAAAAAGAAC+TGG | + | tig0023721:60136-60155 | None:intergenic | 25.0% |
| !! | TAAAAAATATGGAGGTACAA+AGG | + | tig0023721:60217-60236 | None:intergenic | 25.0% |
| !!! | GTACCTCCATATTTTTTAAA+TGG | - | tig0023721:60219-60238 | Msa1411140:intron | 25.0% |
| !! | TATTATTTCTCGAGAAACAA+AGG | + | tig0023721:60328-60347 | None:intergenic | 25.0% |
| ! | TGTACAAATATAAAACACCA+AGG | - | tig0023721:60364-60383 | Msa1411140:intron | 25.0% |
| ! | GTACAAATATAAAACACCAA+GGG | - | tig0023721:60365-60384 | Msa1411140:intron | 25.0% |
| !! | TCCTAATAATTTTCACATAG+AGG | - | tig0023721:60506-60525 | Msa1411140:intron | 25.0% |
| ! | TCCTCTATGTGAAAATTATT+AGG | + | tig0023721:60510-60529 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | + | tig0023721:60868-60887 | None:intergenic | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | - | tig0023721:60909-60928 | Msa1411140:intron | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | tig0023721:60909-60928 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | tig0023721:61013-61032 | None:intergenic | 25.0% |
| ! | ACTCCTTAATAAAAACTAGT+GGG | - | tig0023721:61056-61075 | Msa1411140:intron | 25.0% |
| ! | GCCATTAAATCAAACTATAT+AGG | - | tig0023721:61119-61138 | Msa1411140:intron | 25.0% |
| ! | AAAAAATGCGATGAATTGAA+AGG | - | tig0023721:61312-61331 | Msa1411140:intron | 25.0% |
| ! | AGGTAAATAATCATACCAAT+AGG | - | tig0023721:61332-61351 | Msa1411140:intron | 25.0% |
| !! | GCTTTTTATATCCTTAGTTT+TGG | + | tig0023721:61431-61450 | None:intergenic | 25.0% |
| !!! | CAAAGAAAAAAGTGTTTCTT+AGG | + | tig0023721:61520-61539 | None:intergenic | 25.0% |
| !! | CGGAGATAAATAAAGTTTTA+TGG | - | tig0023721:61596-61615 | Msa1411140:intron | 25.0% |
| ! | TAGAACAAGTCTATAAGTAA+AGG | - | tig0023721:61820-61839 | Msa1411140:intron | 25.0% |
| ! | AAGTCTATAAGTAAAGGTTT+AGG | - | tig0023721:61826-61845 | Msa1411140:intron | 25.0% |
| ! | TTTATTTGGCCAAATTTCTT+CGG | - | tig0023721:62041-62060 | Msa1411140:CDS | 25.0% |
| ! | ATTAAGAAATGCAACTTCAA+AGG | + | tig0023721:62489-62508 | None:intergenic | 25.0% |
| ! | ATCTTTTACTAGGAACAATG+GGG | + | tig0023721:59574-59593 | None:intergenic | 30.0% |
| ! | TTGTATTTCCTGTTTTACCA+AGG | + | tig0023721:59640-59659 | None:intergenic | 30.0% |
| !! | GGAAATACAACTTGTCATTT+TGG | - | tig0023721:59650-59669 | Msa1411140:CDS | 30.0% |
| TTTCAAGACTATGATATCTC+TGG | - | tig0023721:59677-59696 | Msa1411140:CDS | 30.0% | |
| ! | TCTCGTGGTATAAATTTTAC+GGG | + | tig0023721:59716-59735 | None:intergenic | 30.0% |
| GAGAGGAATAATGAAGAAAA+TGG | - | tig0023721:59992-60011 | Msa1411140:intron | 30.0% | |
| TGCCCATTTAAAAAATATGG+AGG | + | tig0023721:60225-60244 | None:intergenic | 30.0% | |
| TATTAGGAAAAAGATGAGGA+CGG | + | tig0023721:60494-60513 | None:intergenic | 30.0% | |
| ! | CACACCTTCTAAAAAATAAG+TGG | - | tig0023721:60908-60927 | Msa1411140:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | + | tig0023721:60968-60987 | None:intergenic | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | tig0023721:60968-60987 | Msa1411140:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | tig0023721:60908-60927 | None:intergenic | 30.0% |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | tig0023721:60995-61014 | Msa1411140:intron | 30.0% |
| CACTCCTTAATAAAAACTAG+TGG | - | tig0023721:61055-61074 | Msa1411140:intron | 30.0% | |
| !!! | ACACCCACTAGTTTTTATTA+AGG | + | tig0023721:61062-61081 | None:intergenic | 30.0% |
| ! | ATATATATATGGGGTTTGCT+AGG | + | tig0023721:61087-61106 | None:intergenic | 30.0% |
| !! | TCAAGGTGTAGATTGTTTTT+GGG | + | tig0023721:61210-61229 | None:intergenic | 30.0% |
| !!! | TTTTGGGTACACTTTTTCAA+CGG | + | tig0023721:61414-61433 | None:intergenic | 30.0% |
| ! | AAAAAGTGTACCCAAAACTA+AGG | - | tig0023721:61417-61436 | Msa1411140:intron | 30.0% |
| TAAACTCCACAGTACTATTA+GGG | + | tig0023721:61574-61593 | None:intergenic | 30.0% | |
| !! | CTTGGTTTGCAATCAATATA+TGG | + | tig0023721:61852-61871 | None:intergenic | 30.0% |
| ! | CTGGCAGCAAATATTTTATT+TGG | - | tig0023721:62027-62046 | Msa1411140:CDS | 30.0% |
| TTGTTGGTATTAATGACACT+AGG | - | tig0023721:62297-62316 | Msa1411140:CDS | 30.0% | |
| AATTACCATGAAGCCTACAT+TGG | - | tig0023721:59453-59472 | Msa1411140:CDS | 35.0% | |
| GATTTCAGCAACTTGTGTAA+AGG | + | tig0023721:59531-59550 | None:intergenic | 35.0% | |
| GAAATCGTGAAGGATGTAAA+TGG | - | tig0023721:59545-59564 | Msa1411140:CDS | 35.0% | |
| TGGCCAAATTACTTCGAAAA+AGG | - | tig0023721:59602-59621 | Msa1411140:CDS | 35.0% | |
| CCAAATTACTTCGAAAAAGG+CGG | - | tig0023721:59605-59624 | Msa1411140:CDS | 35.0% | |
| ! | GTGGTATAAATTTTACGGGT+AGG | + | tig0023721:59712-59731 | None:intergenic | 35.0% |
| ! | GATGGTGTCGAAAAATACTA+TGG | - | tig0023721:59872-59891 | Msa1411140:intron | 35.0% |
| ! | GAATTTTGGATACTTGACAC+TGG | - | tig0023721:59923-59942 | Msa1411140:intron | 35.0% |
| !! | ATGTCGGTTCTTATATTGAG+AGG | - | tig0023721:59975-59994 | Msa1411140:intron | 35.0% |
| TGAAGAAAATGGAATGCGTT+TGG | - | tig0023721:60003-60022 | Msa1411140:intron | 35.0% | |
| ! | ACGTCAATTACCCTTTAGAA+TGG | - | tig0023721:60045-60064 | Msa1411140:intron | 35.0% |
| ACATCTTGTATCTTGTGCTT+GGG | + | tig0023721:60269-60288 | None:intergenic | 35.0% | |
| TACATCTTGTATCTTGTGCT+TGG | + | tig0023721:60270-60289 | None:intergenic | 35.0% | |
| TTTATGAGCAAAATTGCCCT+TGG | + | tig0023721:60384-60403 | None:intergenic | 35.0% | |
| GGAAAGAAAGAGAGTAACAA+TGG | - | tig0023721:60571-60590 | Msa1411140:intron | 35.0% | |
| AAGAAAGAGAGTAACAATGG+TGG | - | tig0023721:60574-60593 | Msa1411140:intron | 35.0% | |
| AGAAAGAGAGTAACAATGGT+GGG | - | tig0023721:60575-60594 | Msa1411140:intron | 35.0% | |
| AGAGAAGAGAGAGAAAGAAA+AGG | - | tig0023721:60607-60626 | Msa1411140:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | - | tig0023721:60823-60842 | Msa1411140:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | + | tig0023721:60829-60848 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | - | tig0023721:60850-60869 | Msa1411140:intron | 35.0% |
| TGTATGTTAGCAACTCCTAT+AGG | + | tig0023721:60951-60970 | None:intergenic | 35.0% | |
| ! | CTCAAGGTGTAGATTGTTTT+TGG | + | tig0023721:61211-61230 | None:intergenic | 35.0% |
| !! | CTCTCTCTCTATTTTTCTCA+AGG | + | tig0023721:61227-61246 | None:intergenic | 35.0% |
| GTGATATGTTGATATGTCGT+TGG | - | tig0023721:61262-61281 | Msa1411140:intron | 35.0% | |
| CTATGTTAATCGTTGCCTAT+TGG | + | tig0023721:61350-61369 | None:intergenic | 35.0% | |
| TATTAGGGTCTCATTCTTCT+AGG | + | tig0023721:61559-61578 | None:intergenic | 35.0% | |
| CTAAACTCCACAGTACTATT+AGG | + | tig0023721:61575-61594 | None:intergenic | 35.0% | |
| AGCTGTGAATAACAATCATG+TGG | - | tig0023721:61689-61708 | Msa1411140:intron | 35.0% | |
| GCTGTGAATAACAATCATGT+GGG | - | tig0023721:61690-61709 | Msa1411140:intron | 35.0% | |
| CTGTGAATAACAATCATGTG+GGG | - | tig0023721:61691-61710 | Msa1411140:intron | 35.0% | |
| TGTGAATAACAATCATGTGG+GGG | - | tig0023721:61692-61711 | Msa1411140:intron | 35.0% | |
| AAAGAGTGGTAAGTAACGTA+GGG | + | tig0023721:61917-61936 | None:intergenic | 35.0% | |
| GCATCTTGTGTAAAGGATAT+TGG | + | tig0023721:61969-61988 | None:intergenic | 35.0% | |
| TTGTTCAGCATCTTGTGTAA+AGG | + | tig0023721:61976-61995 | None:intergenic | 35.0% | |
| ! | AATAGAAACCCTTTGTTGTC+TGG | - | tig0023721:62008-62027 | Msa1411140:CDS | 35.0% |
| CTGCAAGAATATACTTACAC+CGG | - | tig0023721:62125-62144 | Msa1411140:intron | 35.0% | |
| ATATCAGATGTGCTTGTTTC+TGG | + | tig0023721:62179-62198 | None:intergenic | 35.0% | |
| ACATCTGATATGATCTACAC+AGG | - | tig0023721:62188-62207 | Msa1411140:CDS | 35.0% | |
| ATGGTAGATACAGTATGGAT+TGG | - | tig0023721:62272-62291 | Msa1411140:CDS | 35.0% | |
| !! | ACAGTATGGATTGGTATTGT+TGG | - | tig0023721:62281-62300 | Msa1411140:CDS | 35.0% |
| ACACTAGGCATATTGAAGAT+GGG | - | tig0023721:62312-62331 | Msa1411140:CDS | 35.0% | |
| CAGGTGGATAAATGTTGAAT+GGG | + | tig0023721:62391-62410 | None:intergenic | 35.0% | |
| ATATCTAAACAAGTACCAGG+TGG | + | tig0023721:62407-62426 | None:intergenic | 35.0% | |
| CCAATATCTAAACAAGTACC+AGG | + | tig0023721:62410-62429 | None:intergenic | 35.0% | |
| CCTGGTACTTGTTTAGATAT+TGG | - | tig0023721:62407-62426 | Msa1411140:intron | 35.0% | |
| TGATGAAAATGGAAAACGTC+TGG | - | tig0023721:62439-62458 | Msa1411140:intron | 35.0% | |
| GCAAAGAGGAAGAAACCAAA+GGG | + | tig0023721:59485-59504 | None:intergenic | 40.0% | |
| TGATGGAAAGTAAGTGGTGA+AGG | + | tig0023721:59507-59526 | None:intergenic | 40.0% | |
| AAAGGCTGATGGAAAGTAAG+TGG | + | tig0023721:59513-59532 | None:intergenic | 40.0% | |
| ACAAGTTGCTGAAATCGTGA+AGG | - | tig0023721:59535-59554 | Msa1411140:CDS | 40.0% | |
| !!! | CCGCCTTTTTCGAAGTAATT+TGG | + | tig0023721:59608-59627 | None:intergenic | 40.0% |
| GAAGTAAGCCTTGGTAAAAC+AGG | - | tig0023721:59629-59648 | Msa1411140:CDS | 40.0% | |
| CAAGACTATGATATCTCTGG+TGG | - | tig0023721:59680-59699 | Msa1411140:CDS | 40.0% | |
| ! | TATGATATCTCTGGTGGTGT+TGG | - | tig0023721:59686-59705 | Msa1411140:CDS | 40.0% |
| ! | ATTTTTAACCACCACCCACT+TGG | + | tig0023721:59819-59838 | None:intergenic | 40.0% |
| ! | CAACTGCCAACCATTTTGTA+TGG | + | tig0023721:59853-59872 | None:intergenic | 40.0% |
| ACAAAATGGTTGGCAGTTGA+TGG | - | tig0023721:59854-59873 | Msa1411140:intron | 40.0% | |
| ! | GGTGTCGAAAAATACTATGG+AGG | - | tig0023721:59875-59894 | Msa1411140:intron | 40.0% |
| CTATGGAGGTCTGATGATTA+TGG | - | tig0023721:59889-59908 | Msa1411140:intron | 40.0% | |
| !!! | TGGACGGTTGGTTTGAATTT+TGG | - | tig0023721:59909-59928 | Msa1411140:intron | 40.0% |
| TGGATACTTGACACTGGATA+TGG | - | tig0023721:59929-59948 | Msa1411140:intron | 40.0% | |
| ! | ATGGAATGCGTTTGGTCTTT+AGG | - | tig0023721:60011-60030 | Msa1411140:intron | 40.0% |
| ! | TGGAATGCGTTTGGTCTTTA+GGG | - | tig0023721:60012-60031 | Msa1411140:intron | 40.0% |
| GATGTTGATGCAGTTAGAAC+TGG | - | tig0023721:60076-60095 | Msa1411140:intron | 40.0% | |
| GAGAAAGGTGACAAAATCAC+AGG | + | tig0023721:60430-60449 | None:intergenic | 40.0% | |
| ! | GAGAGAGAAAGAAAAGGTAC+TGG | - | tig0023721:60613-60632 | Msa1411140:intron | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | - | tig0023721:60822-60841 | Msa1411140:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | + | tig0023721:60830-60849 | None:intergenic | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | tig0023721:60933-60952 | Msa1411140:intron | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | tig0023721:60940-60959 | None:intergenic | 40.0% | |
| !!! | GGTACACTTTTTCAACGGTT+GGG | + | tig0023721:61409-61428 | None:intergenic | 40.0% |
| GTGGTCTTCTTGAATAGCAA+CGG | - | tig0023721:61460-61479 | Msa1411140:intron | 40.0% | |
| GGGTTGCTTATTCTCATTGT+TGG | + | tig0023721:61499-61518 | None:intergenic | 40.0% | |
| ATGAGACCCTAATAGTACTG+TGG | - | tig0023721:61565-61584 | Msa1411140:intron | 40.0% | |
| ATAGTACTGTGGAGTTTAGC+CGG | - | tig0023721:61576-61595 | Msa1411140:intron | 40.0% | |
| GTGAATAACAATCATGTGGG+GGG | - | tig0023721:61693-61712 | Msa1411140:intron | 40.0% | |
| ! | TTAGGGTTCATGGTTTGTCA+AGG | + | tig0023721:61894-61913 | None:intergenic | 40.0% |
| TGGTAAGTAACGTAGGGTTA+GGG | + | tig0023721:61911-61930 | None:intergenic | 40.0% | |
| GAAAGAGTGGTAAGTAACGT+AGG | + | tig0023721:61918-61937 | None:intergenic | 40.0% | |
| AAAGAGGAGGAAAGAAAGAG+TGG | + | tig0023721:61931-61950 | None:intergenic | 40.0% | |
| ! | GGATATTGGAAAGTGTGTGA+AGG | + | tig0023721:61955-61974 | None:intergenic | 40.0% |
| ! | ATTTGCTGCCAGACAACAAA+GGG | + | tig0023721:62019-62038 | None:intergenic | 40.0% |
| ! | TATTTGCTGCCAGACAACAA+AGG | + | tig0023721:62020-62039 | None:intergenic | 40.0% |
| ! | TTTTACTGCAAGATCTCTGC+CGG | + | tig0023721:62147-62166 | None:intergenic | 40.0% |
| TGATATGATCTACACAGGCA+TGG | - | tig0023721:62193-62212 | Msa1411140:CDS | 40.0% | |
| TGAATCTTCCAAGTGGATGA+TGG | - | tig0023721:62253-62272 | Msa1411140:CDS | 40.0% | |
| TGTATCTACCATCATCCACT+TGG | + | tig0023721:62264-62283 | None:intergenic | 40.0% | |
| ! | GGATGATGGTAGATACAGTA+TGG | - | tig0023721:62267-62286 | Msa1411140:CDS | 40.0% |
| GACACTAGGCATATTGAAGA+TGG | - | tig0023721:62311-62330 | Msa1411140:CDS | 40.0% | |
| ! | GAGAAACATGGTGAACGTTT+TGG | - | tig0023721:62347-62366 | Msa1411140:intron | 40.0% |
| CCAGGTGGATAAATGTTGAA+TGG | + | tig0023721:62392-62411 | None:intergenic | 40.0% | |
| CCATTCAACATTTATCCACC+TGG | - | tig0023721:62389-62408 | Msa1411140:intron | 40.0% | |
| ! | GGAAGAGCTGATGATGAAAA+TGG | - | tig0023721:62428-62447 | Msa1411140:intron | 40.0% |
| GGTAACCAATGTAGGCTTCA+TGG | + | tig0023721:59461-59480 | None:intergenic | 45.0% | |
| CAAAGGGTGGTAACCAATGT+AGG | + | tig0023721:59469-59488 | None:intergenic | 45.0% | |
| ! | CTACATTGGTTACCACCCTT+TGG | - | tig0023721:59467-59486 | Msa1411140:CDS | 45.0% |
| AAGAGGAAGAAACCAAAGGG+TGG | + | tig0023721:59482-59501 | None:intergenic | 45.0% | |
| GGCAAAGAGGAAGAAACCAA+AGG | + | tig0023721:59486-59505 | None:intergenic | 45.0% | |
| AGTAAGTGGTGAAGGCAAAG+AGG | + | tig0023721:59499-59518 | None:intergenic | 45.0% | |
| GCAACTTGTGTAAAGGCTGA+TGG | + | tig0023721:59524-59543 | None:intergenic | 45.0% | |
| GGAGGTCTGATGATTATGGA+CGG | - | tig0023721:59893-59912 | Msa1411140:intron | 45.0% | |
| GTCTGATGATTATGGACGGT+TGG | - | tig0023721:59897-59916 | Msa1411140:intron | 45.0% | |
| AGGAAAAAGATGAGGACGGA+GGG | + | tig0023721:60490-60509 | None:intergenic | 45.0% | |
| TAGGAAAAAGATGAGGACGG+AGG | + | tig0023721:60491-60510 | None:intergenic | 45.0% | |
| TGGGAGAAGAGAGTTGCATA+TGG | - | tig0023721:60549-60568 | Msa1411140:intron | 45.0% | |
| GGGAGAAGAGAGTTGCATAT+GGG | - | tig0023721:60550-60569 | Msa1411140:intron | 45.0% | |
| !!! | GGGTACACTTTTTCAACGGT+TGG | + | tig0023721:61410-61429 | None:intergenic | 45.0% |
| TAACGTAGGGTTAGGGTTCA+TGG | + | tig0023721:61904-61923 | None:intergenic | 45.0% | |
| GTGGTAAGTAACGTAGGGTT+AGG | + | tig0023721:61912-61931 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGTGAAGGCAAAG+AGG | + | tig0023721:61947-61966 | None:intergenic | 45.0% |
| ACAAGATGCTGAACAAGTGC+AGG | - | tig0023721:61980-61999 | Msa1411140:CDS | 45.0% | |
| TGGCCAAATTTCTTCGGAAC+AGG | - | tig0023721:62047-62066 | Msa1411140:CDS | 45.0% | |
| CCACCTGTTCCGAAGAAATT+TGG | + | tig0023721:62053-62072 | None:intergenic | 45.0% | |
| CCAAATTTCTTCGGAACAGG+TGG | - | tig0023721:62050-62069 | Msa1411140:CDS | 45.0% | |
| ACAGGTGGTGAAGTAAGACT+TGG | - | tig0023721:62065-62084 | Msa1411140:CDS | 45.0% | |
| !! | CAGATGTGCTTGTTTCTGGT+GGG | + | tig0023721:62175-62194 | None:intergenic | 45.0% |
| !! | TCAGATGTGCTTGTTTCTGG+TGG | + | tig0023721:62176-62195 | None:intergenic | 45.0% |
| AGTGTGCTGAATCTTCCAAG+TGG | - | tig0023721:62246-62265 | Msa1411140:CDS | 45.0% | |
| !! | TATATATATATATATATATG+GGG | + | tig0023721:61100-61119 | None:intergenic | 5.0% |
| AAAGGCGGTGAAGTAAGCCT+TGG | - | tig0023721:59620-59639 | Msa1411140:CDS | 50.0% | |
| ACCAGTAGAGATGGGATCGT+CGG | + | tig0023721:59747-59766 | None:intergenic | 50.0% | |
| TTGGAGGATTCTGCACACTC+TGG | + | tig0023721:59800-59819 | None:intergenic | 50.0% | |
| AGTGTGCAGAATCCTCCAAG+TGG | - | tig0023721:59801-59820 | Msa1411140:intron | 50.0% | |
| GTGTGCAGAATCCTCCAAGT+GGG | - | tig0023721:59802-59821 | Msa1411140:intron | 50.0% | |
| TTTAACCACCACCCACTTGG+AGG | + | tig0023721:59816-59835 | None:intergenic | 50.0% | |
| ! | AGGTGACGGTCTAGAGAGAA+AGG | + | tig0023721:60445-60464 | None:intergenic | 50.0% |
| GGTTGGGACGATAAAGAGCA+CGG | + | tig0023721:61393-61412 | None:intergenic | 50.0% | |
| ! | CATGTGGGGGGCATGAATAT+TGG | - | tig0023721:61705-61724 | Msa1411140:intron | 50.0% |
| AGTGTGTGAAGGCAAAGAGG+AGG | + | tig0023721:61944-61963 | None:intergenic | 50.0% | |
| TGCAGAATCCTCCAAGTGGG+TGG | - | tig0023721:59805-59824 | Msa1411140:intron | 55.0% | |
| AGAATCCTCCAAGTGGGTGG+TGG | - | tig0023721:59808-59827 | Msa1411140:intron | 55.0% | |
| GAGGAAAGCGACGAGATCAG+CGG | - | tig0023721:60525-60544 | Msa1411140:intron | 55.0% | |
| AAAGCGACGAGATCAGCGGA+TGG | - | tig0023721:60529-60548 | Msa1411140:intron | 55.0% | |
| AAGCGACGAGATCAGCGGAT+GGG | - | tig0023721:60530-60549 | Msa1411140:intron | 55.0% | |
| ! | GGACGATAAAGAGCACGGTG+TGG | + | tig0023721:61388-61407 | None:intergenic | 55.0% |
| TCGTCGGCGCTTGTATCTCG+TGG | + | tig0023721:59731-59750 | None:intergenic | 60.0% | |
| GCCGACGATCCCATCTCTAC+TGG | - | tig0023721:59743-59762 | Msa1411140:CDS | 60.0% | |
| AGACCGTCACCTCTCTCCCT+CGG | - | tig0023721:60453-60472 | Msa1411140:intron | 60.0% | |
| AGACCGAGGGAGAGAGGTGA+CGG | + | tig0023721:60459-60478 | None:intergenic | 60.0% | |
| TGATGCAGACCGAGGGAGAG+AGG | + | tig0023721:60465-60484 | None:intergenic | 60.0% | |
| ! | GAGGGTGTGATGCAGACCGA+GGG | + | tig0023721:60472-60491 | None:intergenic | 60.0% |
| ! | GGAGGGTGTGATGCAGACCG+AGG | + | tig0023721:60473-60492 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023721 | gene | 59379 | 62520 | 59379 | ID=Msa1411140;Name=Msa1411140 |
| tig0023721 | mRNA | 59379 | 62520 | 59379 | ID=Msa1411140-mRNA-1;Parent=Msa1411140;Name=Msa1411140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.75|0|0|4|0|288 |
| tig0023721 | exon | 62514 | 62520 | 62514 | ID=Msa1411140-mRNA-1:exon:19931;Parent=Msa1411140-mRNA-1 |
| tig0023721 | exon | 62135 | 62359 | 62135 | ID=Msa1411140-mRNA-1:exon:19930;Parent=Msa1411140-mRNA-1 |
| tig0023721 | exon | 61853 | 62098 | 61853 | ID=Msa1411140-mRNA-1:exon:19929;Parent=Msa1411140-mRNA-1 |
| tig0023721 | exon | 59379 | 59767 | 59379 | ID=Msa1411140-mRNA-1:exon:19928;Parent=Msa1411140-mRNA-1 |
| tig0023721 | CDS | 62514 | 62520 | 62514 | ID=Msa1411140-mRNA-1:cds;Parent=Msa1411140-mRNA-1 |
| tig0023721 | CDS | 62135 | 62359 | 62135 | ID=Msa1411140-mRNA-1:cds;Parent=Msa1411140-mRNA-1 |
| tig0023721 | CDS | 61853 | 62098 | 61853 | ID=Msa1411140-mRNA-1:cds;Parent=Msa1411140-mRNA-1 |
| tig0023721 | CDS | 59379 | 59767 | 59379 | ID=Msa1411140-mRNA-1:cds;Parent=Msa1411140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
