AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0163340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163340 MtrunA17_Chr1g0178161 96.429 196 7 0 1 196 1 196 2.48e-136 379
Msa0163340 MtrunA17_Chr1g0178191 77.551 196 42 1 1 196 1 194 7.80e-94 271
Msa0163340 MtrunA17_Chr1g0178181 80.612 196 37 1 1 196 1 195 2.38e-92 268
Msa0163340 MtrunA17_Chr2g0321671 52.381 210 84 1 2 195 10 219 5.69e-59 184
Msa0163340 MtrunA17_Chr7g0217691 45.789 190 99 1 7 196 1 186 8.45e-53 167
Msa0163340 MtrunA17_Chr4g0042551 42.197 173 100 0 23 195 44 216 2.38e-47 154
Msa0163340 MtrunA17_Chr5g0417761 40.722 194 102 2 4 196 5 186 1.40e-41 139
Msa0163340 MtrunA17_Chr4g0021111 34.615 156 87 4 37 189 7 150 3.55e-18 77.8
Msa0163340 MtrunA17_Chr2g0303151 34.167 120 73 3 73 189 69 185 1.34e-12 63.5
Msa0163340 MtrunA17_Chr8g0381001 29.114 158 99 4 42 189 30 184 5.33e-11 59.3
Msa0163340 MtrunA17_Chr2g0290281 26.220 164 116 3 33 193 6 167 5.73e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0163340 AT2G36100.1 55.446 202 83 2 2 196 5 206 1.00e-68 209
Msa0163340 AT3G11550.1 60.500 200 74 1 2 196 5 204 1.77e-64 197
Msa0163340 AT2G27370.1 56.522 184 73 1 12 195 43 219 2.26e-64 198
Msa0163340 AT5G06200.1 58.586 198 77 2 2 195 5 201 1.04e-63 196
Msa0163340 AT5G15290.1 44.000 150 84 0 27 176 17 166 5.20e-44 145
Msa0163340 AT1G14160.1 40.606 165 98 0 32 196 45 209 2.68e-42 141
Msa0163340 AT1G03700.1 30.769 169 99 3 21 189 1 151 2.10e-17 76.3
Msa0163340 AT1G17200.1 26.455 189 126 5 9 193 2 181 6.09e-14 67.8
Msa0163340 AT4G03540.1 32.258 124 75 2 55 178 26 140 1.22e-13 66.2
Msa0163340 AT4G15630.1 26.816 179 111 5 27 193 19 189 4.10e-11 59.7
Msa0163340 AT3G06390.1 27.820 133 91 2 38 165 37 169 5.95e-11 59.7

Find 42 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCCATTTGCAACCAATT+TGG 0.187527 1_4:-41468433 Msa0163340:CDS
GTGATGTCTGCTTTGGCTCT+TGG 0.283856 1_4:-41468337 Msa0163340:CDS
TCTTAGAACAAAATCCATTA+TGG 0.318159 1_4:+41469497 None:intergenic
ATGATGGTTACTATGGAAAA+TGG 0.329026 1_4:+41469088 None:intergenic
TGATGTCTGCTTTGGCTCTT+GGG 0.345325 1_4:-41468336 Msa0163340:CDS
AGCAGCTGCCATGGTTTACT+TGG 0.359773 1_4:-41468485 Msa0163340:CDS
GTTGGTTGTGATGTCTGCTT+TGG 0.399140 1_4:-41468344 Msa0163340:CDS
GGCATTTGTGGGTGGCTACC+TGG 0.401958 1_4:-41469122 Msa0163340:CDS
AATGTCAACCACTATTGATA+TGG 0.415102 1_4:-41469604 Msa0163340:CDS
AGGGCGAATGATGGTTACTA+TGG 0.422728 1_4:+41469081 None:intergenic
CATAACTAGCTTCAAATTGA+AGG 0.426220 1_4:+41469394 None:intergenic
ATTGGAGCCACTGCAAGGCC+TGG 0.429435 1_4:-41469540 Msa0163340:CDS
ACGGCAATCAAGACTCAAAC+TGG 0.435689 1_4:-41468456 Msa0163340:CDS
ATCTCCAAATTGGTTGCAAA+TGG 0.439108 1_4:+41468429 None:intergenic
TGTTATTGCAATGGCATTTG+TGG 0.446696 1_4:-41469134 Msa0163340:CDS
GTTATTGCAATGGCATTTGT+GGG 0.458726 1_4:-41469133 Msa0163340:CDS
ATCATTCGCCCTCATGCACC+TGG 0.484461 1_4:-41469070 Msa0163340:CDS
TGGTTACTATGGAAAATGGT+AGG 0.486275 1_4:+41469092 None:intergenic
TGGTGCTTCAGCAGCTGCCA+TGG 0.489524 1_4:-41468494 Msa0163340:CDS
TGAAGGAACTGAGTGAAGAA+AGG 0.493692 1_4:+41469411 None:intergenic
TGACTCTGCCATATCAATAG+TGG 0.510355 1_4:+41469596 None:intergenic
CCACTGCAAGGCCTGGAGGA+TGG 0.524990 1_4:-41469533 Msa0163340:CDS
TGCAGCAAGAGAAGCTGCTA+TGG 0.527344 1_4:+41469467 None:intergenic
CCATCCTCCAGGCCTTGCAG+TGG 0.532661 1_4:+41469533 None:intergenic
ATGAGGAAAAGCCTTGGTCC+AGG 0.542585 1_4:+41469052 None:intergenic
CTTTAATTGGAGCCACTGCA+AGG 0.554612 1_4:-41469545 Msa0163340:CDS
GGTTACTATGGAAAATGGTA+GGG 0.561081 1_4:+41469093 None:intergenic
AGCCTTGGTCCAGGTGCATG+AGG 0.573726 1_4:+41469061 None:intergenic
AGGTGCATGAGGGCGAATGA+TGG 0.573876 1_4:+41469072 None:intergenic
GCCCTCATGCACCTGGACCA+AGG 0.587519 1_4:-41469063 Msa0163340:CDS
TGCTGAAGCACCACTAGCAG+TGG 0.592321 1_4:+41468504 None:intergenic
AATCTGATCACTAGTTGCCA+TGG 0.596028 1_4:+41469437 None:intergenic
ATTGCAATGGCATTTGTGGG+TGG 0.596308 1_4:-41469130 Msa0163340:CDS
ATGACATTAGCCACTGCTAG+TGG 0.602800 1_4:-41468514 Msa0163340:CDS
GCGATGATGAGGAAAAGCCT+TGG 0.613791 1_4:+41469046 None:intergenic
GCCTTGGTCCAGGTGCATGA+GGG 0.623258 1_4:+41469062 None:intergenic
ATGGTTTACTTGGCACACAA+CGG 0.636706 1_4:-41468475 Msa0163340:CDS
GGAGCCACTGCAAGGCCTGG+AGG 0.665040 1_4:-41469537 Msa0163340:CDS
TTACTGTGTCTGCGATGATG+AGG 0.667059 1_4:+41469035 None:intergenic
TCTTGCTGCAACTATCACCA+TGG 0.694318 1_4:-41469454 Msa0163340:CDS
AAAATGGTAGGGATAAGACC+AGG 0.708096 1_4:+41469104 None:intergenic
GTTGTGTGCCAAGTAAACCA+TGG 0.790091 1_4:+41468477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTTGTTTAAGTTAG+AGG + chr1_4:41468597-41468616 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG + chr1_4:41468928-41468947 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG + chr1_4:41468936-41468955 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG + chr1_4:41468979-41468998 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG + chr1_4:41468980-41468999 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG + chr1_4:41469085-41469104 None:intergenic 15.0%
!!! AAATTATTTGTTTAAGTTAG+AGG + chr1_4:41468597-41468616 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG + chr1_4:41468928-41468947 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG + chr1_4:41468936-41468955 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG + chr1_4:41468979-41468998 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG + chr1_4:41468980-41468999 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG + chr1_4:41469085-41469104 None:intergenic 15.0%
!! AATGTTTATTGTAAATATGC+AGG - chr1_4:41468768-41468787 Msa0163340:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG - chr1_4:41468995-41469014 Msa0163340:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG - chr1_4:41469277-41469296 Msa0163340:intron 20.0%
!! AATGTTTATTGTAAATATGC+AGG - chr1_4:41468768-41468787 Msa0163340:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG - chr1_4:41468995-41469014 Msa0163340:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG - chr1_4:41469277-41469296 Msa0163340:intron 20.0%
!! AATGAAAAAGCTGCTTTAAT+TGG - chr1_4:41468372-41468391 Msa0163340:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG + chr1_4:41468436-41468455 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG - chr1_4:41468438-41468457 Msa0163340:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG + chr1_4:41469064-41469083 None:intergenic 25.0%
!! AATGAAAAAGCTGCTTTAAT+TGG - chr1_4:41468372-41468391 Msa0163340:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG + chr1_4:41468436-41468455 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG - chr1_4:41468438-41468457 Msa0163340:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG + chr1_4:41469064-41469083 None:intergenic 25.0%
! CATAACTAGCTTCAAATTGA+AGG + chr1_4:41468539-41468558 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG + chr1_4:41468631-41468650 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG + chr1_4:41468642-41468661 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG + chr1_4:41468662-41468681 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG - chr1_4:41468787-41468806 Msa0163340:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG + chr1_4:41468845-41468864 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG - chr1_4:41469038-41469057 Msa0163340:intron 30.0%
GAAGATAAATTGACACAATG+AGG - chr1_4:41469182-41469201 Msa0163340:intron 30.0%
AATGAGGAAATGAACTATGA+AGG - chr1_4:41469198-41469217 Msa0163340:intron 30.0%
ATGAGGAAATGAACTATGAA+GGG - chr1_4:41469199-41469218 Msa0163340:intron 30.0%
TAATGTCATAAACACCTACA+CGG + chr1_4:41469405-41469424 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG - chr1_4:41469562-41469581 Msa0163340:CDS 30.0%
! CATAACTAGCTTCAAATTGA+AGG + chr1_4:41468539-41468558 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG + chr1_4:41468631-41468650 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG + chr1_4:41468642-41468661 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG + chr1_4:41468662-41468681 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG - chr1_4:41468787-41468806 Msa0163340:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG + chr1_4:41468845-41468864 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG - chr1_4:41469038-41469057 Msa0163340:intron 30.0%
GAAGATAAATTGACACAATG+AGG - chr1_4:41469182-41469201 Msa0163340:intron 30.0%
AATGAGGAAATGAACTATGA+AGG - chr1_4:41469198-41469217 Msa0163340:intron 30.0%
ATGAGGAAATGAACTATGAA+GGG - chr1_4:41469199-41469218 Msa0163340:intron 30.0%
TAATGTCATAAACACCTACA+CGG + chr1_4:41469405-41469424 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG - chr1_4:41469562-41469581 Msa0163340:CDS 30.0%
! GAAAAAAGGCATAGCCATAA+TGG - chr1_4:41468419-41468438 Msa0163340:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG + chr1_4:41468578-41468597 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG - chr1_4:41468796-41468815 Msa0163340:intron 35.0%
GTTATTGCAATGGCATTTGT+GGG - chr1_4:41468797-41468816 Msa0163340:intron 35.0%
GGTTACTATGGAAAATGGTA+GGG + chr1_4:41468840-41468859 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG + chr1_4:41468841-41468860 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG - chr1_4:41469388-41469407 Msa0163340:CDS 35.0%
ATCTCCAAATTGGTTGCAAA+TGG + chr1_4:41469504-41469523 None:intergenic 35.0%
GTGCACAAAAATCTCCAAAT+TGG + chr1_4:41469514-41469533 None:intergenic 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG - chr1_4:41469550-41469569 Msa0163340:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG - chr1_4:41469568-41469587 Msa0163340:CDS 35.0%
! GAAAAAAGGCATAGCCATAA+TGG - chr1_4:41468419-41468438 Msa0163340:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG + chr1_4:41468578-41468597 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG - chr1_4:41468796-41468815 Msa0163340:intron 35.0%
GTTATTGCAATGGCATTTGT+GGG - chr1_4:41468797-41468816 Msa0163340:intron 35.0%
GGTTACTATGGAAAATGGTA+GGG + chr1_4:41468840-41468859 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG + chr1_4:41468841-41468860 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG - chr1_4:41469388-41469407 Msa0163340:CDS 35.0%
ATCTCCAAATTGGTTGCAAA+TGG + chr1_4:41469504-41469523 None:intergenic 35.0%
GTGCACAAAAATCTCCAAAT+TGG + chr1_4:41469514-41469533 None:intergenic 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG - chr1_4:41469550-41469569 Msa0163340:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG - chr1_4:41469568-41469587 Msa0163340:CDS 35.0%
TGACTCTGCCATATCAATAG+TGG + chr1_4:41468337-41468356 None:intergenic 40.0%
AATCTGATCACTAGTTGCCA+TGG + chr1_4:41468496-41468515 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG + chr1_4:41468522-41468541 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG + chr1_4:41468627-41468646 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG + chr1_4:41468628-41468647 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG + chr1_4:41468829-41468848 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+CGG - chr1_4:41469455-41469474 Msa0163340:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG - chr1_4:41469497-41469516 Msa0163340:CDS 40.0%
! GATTTTTGTGCACAGACAAG+TGG - chr1_4:41469521-41469540 Msa0163340:CDS 40.0%
TGACTCTGCCATATCAATAG+TGG + chr1_4:41468337-41468356 None:intergenic 40.0%
AATCTGATCACTAGTTGCCA+TGG + chr1_4:41468496-41468515 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG + chr1_4:41468522-41468541 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG + chr1_4:41468627-41468646 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG + chr1_4:41468628-41468647 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG + chr1_4:41468829-41468848 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+CGG - chr1_4:41469455-41469474 Msa0163340:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG - chr1_4:41469497-41469516 Msa0163340:CDS 40.0%
! GATTTTTGTGCACAGACAAG+TGG - chr1_4:41469521-41469540 Msa0163340:CDS 40.0%
CTTTAATTGGAGCCACTGCA+AGG - chr1_4:41468385-41468404 Msa0163340:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG + chr1_4:41468411-41468430 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG - chr1_4:41468476-41468495 Msa0163340:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG - chr1_4:41468622-41468641 Msa0163340:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG - chr1_4:41468800-41468819 Msa0163340:intron 45.0%
AGGGCGAATGATGGTTACTA+TGG + chr1_4:41468852-41468871 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG + chr1_4:41468898-41468917 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG + chr1_4:41469047-41469066 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG - chr1_4:41469416-41469435 Msa0163340:CDS 45.0%
GTTGTGTGCCAAGTAAACCA+TGG + chr1_4:41469456-41469475 None:intergenic 45.0%
ACGGCAATCAAGACTCAAAC+TGG - chr1_4:41469474-41469493 Msa0163340:CDS 45.0%
GTTGGTTGTGATGTCTGCTT+TGG - chr1_4:41469586-41469605 Msa0163340:CDS 45.0%
!! TGATGTCTGCTTTGGCTCTT+GGG - chr1_4:41469594-41469613 Msa0163340:CDS 45.0%
CTTTAATTGGAGCCACTGCA+AGG - chr1_4:41468385-41468404 Msa0163340:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG + chr1_4:41468411-41468430 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG - chr1_4:41468476-41468495 Msa0163340:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG - chr1_4:41468622-41468641 Msa0163340:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG - chr1_4:41468800-41468819 Msa0163340:intron 45.0%
AGGGCGAATGATGGTTACTA+TGG + chr1_4:41468852-41468871 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG + chr1_4:41468898-41468917 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG + chr1_4:41469047-41469066 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG - chr1_4:41469416-41469435 Msa0163340:CDS 45.0%
GTTGTGTGCCAAGTAAACCA+TGG + chr1_4:41469456-41469475 None:intergenic 45.0%
ACGGCAATCAAGACTCAAAC+TGG - chr1_4:41469474-41469493 Msa0163340:CDS 45.0%
GTTGGTTGTGATGTCTGCTT+TGG - chr1_4:41469586-41469605 Msa0163340:CDS 45.0%
!! TGATGTCTGCTTTGGCTCTT+GGG - chr1_4:41469594-41469613 Msa0163340:CDS 45.0%
AGGCCTGGAGGATGGAAAAA+AGG - chr1_4:41468405-41468424 Msa0163340:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG + chr1_4:41468466-41468485 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG + chr1_4:41468881-41468900 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG + chr1_4:41468887-41468906 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG - chr1_4:41469445-41469464 Msa0163340:CDS 50.0%
!! GTGATGTCTGCTTTGGCTCT+TGG - chr1_4:41469593-41469612 Msa0163340:CDS 50.0%
AGGCCTGGAGGATGGAAAAA+AGG - chr1_4:41468405-41468424 Msa0163340:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG + chr1_4:41468466-41468485 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG + chr1_4:41468881-41468900 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG + chr1_4:41468887-41468906 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG - chr1_4:41469445-41469464 Msa0163340:CDS 50.0%
!! GTGATGTCTGCTTTGGCTCT+TGG - chr1_4:41469593-41469612 Msa0163340:CDS 50.0%
AGGTGCATGAGGGCGAATGA+TGG + chr1_4:41468861-41468880 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG - chr1_4:41468860-41468879 Msa0163340:intron 55.0%
! TGCTGAAGCACCACTAGCAG+TGG + chr1_4:41469429-41469448 None:intergenic 55.0%
AGGTGCATGAGGGCGAATGA+TGG + chr1_4:41468861-41468880 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG - chr1_4:41468860-41468879 Msa0163340:intron 55.0%
! TGCTGAAGCACCACTAGCAG+TGG + chr1_4:41469429-41469448 None:intergenic 55.0%
ATTGGAGCCACTGCAAGGCC+TGG - chr1_4:41468390-41468409 Msa0163340:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG - chr1_4:41468808-41468827 Msa0163340:intron 60.0%
GCCTTGGTCCAGGTGCATGA+GGG + chr1_4:41468871-41468890 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG + chr1_4:41468872-41468891 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG - chr1_4:41469436-41469455 Msa0163340:CDS 60.0%
ATTGGAGCCACTGCAAGGCC+TGG - chr1_4:41468390-41468409 Msa0163340:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG - chr1_4:41468808-41468827 Msa0163340:intron 60.0%
GCCTTGGTCCAGGTGCATGA+GGG + chr1_4:41468871-41468890 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG + chr1_4:41468872-41468891 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG - chr1_4:41469436-41469455 Msa0163340:CDS 60.0%
CCATCCTCCAGGCCTTGCAG+TGG + chr1_4:41468400-41468419 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG - chr1_4:41468397-41468416 Msa0163340:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG - chr1_4:41468867-41468886 Msa0163340:intron 65.0%
CCATCCTCCAGGCCTTGCAG+TGG + chr1_4:41468400-41468419 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG - chr1_4:41468397-41468416 Msa0163340:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG - chr1_4:41468867-41468886 Msa0163340:intron 65.0%
GGAGCCACTGCAAGGCCTGG+AGG - chr1_4:41468393-41468412 Msa0163340:CDS 70.0%
GGAGCCACTGCAAGGCCTGG+AGG - chr1_4:41468393-41468412 Msa0163340:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 41468327 41469625 41468327 ID=Msa0163340;Name=Msa0163340
chr1_4 mRNA 41468327 41469625 41468327 ID=Msa0163340-mRNA-1;Parent=Msa0163340;Name=Msa0163340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|196
chr1_4 exon 41469375 41469625 41469375 ID=Msa0163340-mRNA-1:exon:11922;Parent=Msa0163340-mRNA-1
chr1_4 exon 41469039 41469162 41469039 ID=Msa0163340-mRNA-1:exon:11921;Parent=Msa0163340-mRNA-1
chr1_4 exon 41468327 41468542 41468327 ID=Msa0163340-mRNA-1:exon:11920;Parent=Msa0163340-mRNA-1
chr1_4 CDS 41469375 41469625 41469375 ID=Msa0163340-mRNA-1:cds;Parent=Msa0163340-mRNA-1
chr1_4 CDS 41469039 41469162 41469039 ID=Msa0163340-mRNA-1:cds;Parent=Msa0163340-mRNA-1
chr1_4 CDS 41468327 41468542 41468327 ID=Msa0163340-mRNA-1:cds;Parent=Msa0163340-mRNA-1
Gene Sequence

>Msa0163340

ATGTCAACCACTATTGATATGGCAGAGTCAAGCAACGCTCATGTTAATGAAAAAGCTGCTTTAATTGGAGCCACTGCAAGGCCTGGAGGATGGAAAAAAGGCATAGCCATAATGGATTTTGTTCTAAGATTAGGTGCCATAGCAGCTTCTCTTGCTGCAACTATCACCATGGCAACTAGTGATCAGATTCTTCCTTTCTTCACTCAGTTCCTTCAATTTGAAGCTAGTTATGATAGCTTTTCAACTTTCCAGTTTTTTGTTATTGCAATGGCATTTGTGGGTGGCTACCTGGTCTTATCCCTACCATTTTCCATAGTAACCATCATTCGCCCTCATGCACCTGGACCAAGGCTTTTCCTCATCATCGCAGACACAGTGTTTATGACATTAGCCACTGCTAGTGGTGCTTCAGCAGCTGCCATGGTTTACTTGGCACACAACGGCAATCAAGACTCAAACTGGCTTGCCATTTGCAACCAATTTGGAGATTTTTGTGCACAGACAAGTGGTGCAGTTGTGTCATGTTTTATTGCTGTGGTTGTTTTAATGGTGTTGGTTGTGATGTCTGCTTTGGCTCTTGGGAAGCATTGA

Protein sequence

>Msa0163340

MSTTIDMAESSNAHVNEKAALIGATARPGGWKKGIAIMDFVLRLGAIAASLAATITMATSDQILPFFTQFLQFEASYDSFSTFQFFVIAMAFVGGYLVLSLPFSIVTIIRPHAPGPRLFLIIADTVFMTLATASGASAAAMVYLAHNGNQDSNWLAICNQFGDFCAQTSGAVVSCFIAVVVLMVLVVMSALALGKH*