Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920400 | XP_013452121.1 | 40.506 | 158 | 81 | 6 | 135 | 283 | 53 | 206 | 7.49e-18 | 91.3 |
| Msa0920400 | XP_013452121.1 | 56.391 | 133 | 56 | 2 | 9 | 140 | 11 | 142 | 8.87e-39 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920400 | sp|Q41015|PIP21_PEA | 38.824 | 170 | 88 | 8 | 122 | 282 | 44 | 206 | 1.33e-20 | 90.9 |
| Msa0920400 | sp|Q41015|PIP21_PEA | 40.397 | 151 | 83 | 6 | 9 | 156 | 11 | 157 | 8.74e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024280 | Msa0920400 | 0.808497 | 3.008651e-50 | -8.615850e-47 |
| Msa0120050 | Msa0920400 | 0.807523 | 4.849598e-50 | -8.615850e-47 |
| Msa0777060 | Msa0920400 | 0.808402 | 3.152201e-50 | -8.615850e-47 |
| Msa0777250 | Msa0920400 | 0.814964 | 1.178185e-51 | -8.615850e-47 |
| Msa0814160 | Msa0920400 | 0.806778 | 6.974259e-50 | -8.615850e-47 |
| Msa0814230 | Msa0920400 | 0.807056 | 6.090806e-50 | -8.615850e-47 |
| Msa0163340 | Msa0920400 | 0.845773 | 3.294635e-59 | -8.615850e-47 |
| Msa0535570 | Msa0920400 | 0.805205 | 1.493926e-49 | -8.615850e-47 |
| Msa0543740 | Msa0920400 | 0.808147 | 3.573469e-50 | -8.615850e-47 |
| Msa0896920 | Msa0920400 | 0.802138 | 6.468526e-49 | -8.615850e-47 |
| Msa0913550 | Msa0920400 | 0.849340 | 3.444366e-60 | -8.615850e-47 |
| Msa0920390 | Msa0920400 | 0.835204 | 1.922732e-56 | -8.615850e-47 |
| Msa0920400 | Msa0951150 | 0.827206 | 1.778076e-54 | -8.615850e-47 |
| Msa0920400 | Msa0995110 | 0.813422 | 2.580352e-51 | -8.615850e-47 |
| Msa0920400 | Msa1021620 | 0.838600 | 2.612258e-57 | -8.615850e-47 |
| Msa0920400 | Msa1149020 | 0.827622 | 1.413222e-54 | -8.615850e-47 |
| Msa0920400 | Msa1152180 | 0.808429 | 3.110855e-50 | -8.615850e-47 |
| Msa0920400 | Msa1323120 | 0.838829 | 2.279211e-57 | -8.615850e-47 |
| Msa0920400 | Msa1368490 | 0.805939 | 1.047537e-49 | -8.615850e-47 |
| Msa0920400 | Msa1411140 | 0.918627 | 1.233985e-86 | -8.615850e-47 |
| Msa0920400 | Msa1411150 | 0.834202 | 3.434530e-56 | -8.615850e-47 |
| Msa0920400 | Msa1459610 | 0.801096 | 1.058072e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920400 | MtrunA17_Chr6g0467771 | 56.391 | 133 | 56 | 2 | 9 | 140 | 11 | 142 | 8.16e-43 | 146 |
| Msa0920400 | MtrunA17_Chr6g0467771 | 40.506 | 158 | 81 | 6 | 135 | 283 | 53 | 206 | 6.89e-22 | 91.3 |
| Msa0920400 | MtrunA17_Chr6g0467621 | 55.970 | 134 | 56 | 3 | 9 | 140 | 11 | 143 | 1.14e-42 | 145 |
| Msa0920400 | MtrunA17_Chr6g0467621 | 37.671 | 146 | 81 | 5 | 145 | 283 | 66 | 208 | 7.28e-19 | 83.2 |
| Msa0920400 | MtrunA17_Chr6g0467611 | 53.731 | 134 | 59 | 3 | 9 | 140 | 11 | 143 | 5.62e-41 | 141 |
| Msa0920400 | MtrunA17_Chr6g0467611 | 40.136 | 147 | 76 | 6 | 145 | 283 | 66 | 208 | 1.85e-21 | 90.1 |
| Msa0920400 | MtrunA17_Chr6g0467761 | 53.731 | 134 | 59 | 3 | 9 | 140 | 11 | 143 | 7.11e-41 | 141 |
| Msa0920400 | MtrunA17_Chr6g0467761 | 40.136 | 147 | 76 | 6 | 145 | 283 | 66 | 208 | 6.67e-21 | 89.0 |
| Msa0920400 | MtrunA17_Chr6g0476921 | 47.222 | 144 | 65 | 5 | 145 | 281 | 63 | 202 | 6.87e-31 | 114 |
| Msa0920400 | MtrunA17_Chr6g0476921 | 47.287 | 129 | 60 | 5 | 17 | 143 | 19 | 141 | 1.62e-24 | 98.2 |
| Msa0920400 | MtrunA17_Chr6g0477281 | 44.776 | 134 | 71 | 3 | 7 | 139 | 8 | 139 | 6.33e-25 | 98.2 |
| Msa0920400 | MtrunA17_Chr6g0477281 | 36.364 | 143 | 58 | 4 | 145 | 281 | 65 | 180 | 2.81e-16 | 75.1 |
| Msa0920400 | MtrunA17_Chr6g0476961 | 43.972 | 141 | 73 | 4 | 145 | 283 | 60 | 196 | 2.10e-24 | 97.4 |
| Msa0920400 | MtrunA17_Chr6g0476961 | 42.647 | 136 | 67 | 7 | 10 | 143 | 10 | 136 | 2.78e-14 | 70.1 |
| Msa0920400 | MtrunA17_Chr6g0476951 | 43.262 | 141 | 74 | 4 | 145 | 283 | 61 | 197 | 7.75e-24 | 95.9 |
| Msa0920400 | MtrunA17_Chr6g0476951 | 40.845 | 142 | 67 | 8 | 7 | 143 | 8 | 137 | 1.23e-13 | 68.2 |
| Msa0920400 | MtrunA17_Chr6g0467781 | 39.456 | 147 | 74 | 6 | 145 | 283 | 25 | 164 | 9.22e-22 | 89.7 |
| Msa0920400 | MtrunA17_Chr6g0467781 | 48.571 | 105 | 49 | 3 | 37 | 140 | 2 | 102 | 1.36e-21 | 89.4 |
| Msa0920400 | MtrunA17_Chr3g0104591 | 40.278 | 144 | 78 | 5 | 145 | 283 | 65 | 205 | 1.07e-21 | 90.5 |
| Msa0920400 | MtrunA17_Chr3g0104591 | 37.500 | 144 | 77 | 6 | 27 | 168 | 27 | 159 | 2.00e-14 | 70.5 |
| Msa0920400 | MtrunA17_Chr6g0476871 | 41.497 | 147 | 69 | 7 | 145 | 280 | 67 | 207 | 1.40e-20 | 87.8 |
| Msa0920400 | MtrunA17_Chr6g0476871 | 39.098 | 133 | 74 | 6 | 14 | 143 | 16 | 144 | 1.15e-13 | 68.6 |
| Msa0920400 | MtrunA17_Chr6g0476821 | 43.307 | 127 | 64 | 5 | 163 | 283 | 13 | 137 | 6.05e-20 | 84.0 |
| Msa0920400 | MtrunA17_Chr6g0452491 | 35.000 | 140 | 81 | 6 | 9 | 146 | 11 | 142 | 5.45e-19 | 83.2 |
| Msa0920400 | MtrunA17_Chr6g0452491 | 36.552 | 145 | 74 | 7 | 148 | 282 | 67 | 203 | 1.53e-13 | 68.2 |
| Msa0920400 | MtrunA17_Chr6g0477741 | 35.971 | 139 | 81 | 5 | 7 | 144 | 9 | 140 | 3.94e-18 | 80.9 |
| Msa0920400 | MtrunA17_Chr6g0477741 | 36.986 | 146 | 74 | 7 | 145 | 280 | 64 | 201 | 5.28e-15 | 72.4 |
| Msa0920400 | MtrunA17_Chr6g0476831 | 39.007 | 141 | 72 | 7 | 148 | 280 | 69 | 203 | 1.17e-16 | 77.4 |
| Msa0920400 | MtrunA17_Chr6g0476831 | 38.298 | 141 | 83 | 4 | 7 | 146 | 9 | 146 | 5.01e-12 | 64.3 |
| Msa0920400 | MtrunA17_Chr6g0452521 | 32.857 | 140 | 84 | 6 | 9 | 146 | 44 | 175 | 1.95e-16 | 76.6 |
| Msa0920400 | MtrunA17_Chr6g0452521 | 35.811 | 148 | 77 | 7 | 145 | 282 | 97 | 236 | 5.93e-13 | 67.0 |
| Msa0920400 | MtrunA17_Chr6g0476791 | 36.170 | 141 | 77 | 4 | 7 | 141 | 12 | 145 | 2.56e-16 | 75.9 |
| Msa0920400 | MtrunA17_Chr6g0476791 | 36.601 | 153 | 69 | 9 | 144 | 278 | 66 | 208 | 6.97e-14 | 69.3 |
| Msa0920400 | MtrunA17_Chr6g0477751 | 31.288 | 163 | 103 | 6 | 7 | 167 | 9 | 164 | 3.65e-14 | 70.1 |
| Msa0920400 | MtrunA17_Chr1g0163381 | 37.324 | 142 | 80 | 8 | 9 | 145 | 11 | 148 | 2.62e-13 | 67.8 |
| Msa0920400 | MtrunA17_Chr6g0457121 | 43.333 | 90 | 44 | 4 | 7 | 94 | 34 | 118 | 6.23e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAATACAACTTGTCATTT+TGG | 0.186647 | 6_2:+55378883 | Msa0920400:CDS |
| ATATCAGATGTGCTTGTTTC+TGG | 0.235465 | 6_2:-55380890 | None:intergenic |
| CTAGTAAAAGATATTATATT+TGG | 0.239098 | 6_2:+55378815 | Msa0920400:CDS |
| TGGCCAAATTACTTCGAAAA+AGG | 0.247542 | 6_2:+55378835 | Msa0920400:CDS |
| CCTGGTACTTGTTTAGATAT+TGG | 0.264094 | 6_2:+55381121 | Msa0920400:CDS |
| GAGAAACATTGTGAACGTTT+TGG | 0.314355 | 6_2:+55381061 | Msa0920400:CDS |
| GGAAGAGCTGATGATGAAAA+TGG | 0.331706 | 6_2:+55381142 | Msa0920400:CDS |
| GAAATCGTGAAGGATGTAAA+TGG | 0.355711 | 6_2:+55378778 | Msa0920400:CDS |
| ATATTTATAACCATACAAAA+TGG | 0.355794 | 6_2:+55379073 | Msa0920400:CDS |
| CTACATTGGTTACCACCCTT+TGG | 0.414345 | 6_2:+55378700 | Msa0920400:CDS |
| GGATGATGGTAGATACAGTA+TGG | 0.421402 | 6_2:+55380981 | Msa0920400:CDS |
| ACAGTATGGATTGGTATTGT+TGG | 0.430045 | 6_2:+55380995 | Msa0920400:CDS |
| GAAGTAAGCCTTGGTAAAAC+AGG | 0.463629 | 6_2:+55378862 | Msa0920400:CDS |
| GACACTAGGCATATTGAAGA+TGG | 0.471700 | 6_2:+55381025 | Msa0920400:CDS |
| CCAGGTGGATAAATGTTGAA+TGG | 0.475739 | 6_2:-55381103 | None:intergenic |
| TTTCAAGACTATGATATCTC+TGG | 0.478293 | 6_2:+55378910 | Msa0920400:CDS |
| ACAAAATGGTTGGCTGTTGA+TGG | 0.493229 | 6_2:+55379087 | Msa0920400:CDS |
| TAATTTATTACCAGTAGAGA+TGG | 0.493482 | 6_2:-55378986 | None:intergenic |
| GATGGTGTCGAAAAGTACTA+TGG | 0.502247 | 6_2:+55379105 | Msa0920400:CDS |
| TTGGAGGATTCTGCACACTC+TGG | 0.503862 | 6_2:-55379030 | None:intergenic |
| TATGATATCTCTGGTGGTGT+TGG | 0.504084 | 6_2:+55378919 | Msa0920400:CDS |
| CAGGTGGATAAATGTTGAAT+GGG | 0.513796 | 6_2:-55381102 | None:intergenic |
| GCAACTTGTGTAAAGGCTGA+TGG | 0.522919 | 6_2:-55378754 | None:intergenic |
| CAAAGGGTGGTAACCAATGT+AGG | 0.525895 | 6_2:-55378699 | None:intergenic |
| TCAGATGTGCTTGTTTCTGG+TGG | 0.526516 | 6_2:-55380887 | None:intergenic |
| CCATTCAACATTTATCCACC+TGG | 0.530864 | 6_2:+55381103 | Msa0920400:CDS |
| TTTAACCACCACCCACTTGG+AGG | 0.539154 | 6_2:-55379046 | None:intergenic |
| TTATAACCATACAAAATGGT+TGG | 0.541840 | 6_2:+55379077 | Msa0920400:CDS |
| GATTTCAGCAACTTGTGTAA+AGG | 0.547026 | 6_2:-55378761 | None:intergenic |
| AGTAAGTGGTGAAGGCAAAG+AGG | 0.549633 | 6_2:-55378729 | None:intergenic |
| ATGGTAGATACAGTATGGAT+TGG | 0.549778 | 6_2:+55380986 | Msa0920400:CDS |
| ATTAAGAAATGCAACTTCAA+AGG | 0.554125 | 6_2:-55381200 | None:intergenic |
| CCAATATCTAAACAAGTACC+AGG | 0.559689 | 6_2:-55381121 | None:intergenic |
| TGATGAAAATGGAAAACGTC+TGG | 0.561721 | 6_2:+55381153 | Msa0920400:CDS |
| AATTACCATGAAGCCTACAT+TGG | 0.568926 | 6_2:+55378686 | None:intergenic |
| GCCGACGATCCCATCTCTAC+TGG | 0.575649 | 6_2:+55378976 | Msa0920400:CDS |
| AATTTATTACCAGTAGAGAT+GGG | 0.575873 | 6_2:-55378985 | None:intergenic |
| GCAAAGAGGAAGAAACCAAA+GGG | 0.580116 | 6_2:-55378715 | None:intergenic |
| TGTATCTACCATCATCCACT+TGG | 0.583496 | 6_2:-55380975 | None:intergenic |
| AGAATCCTCCAAGTGGGTGG+TGG | 0.584192 | 6_2:+55379041 | Msa0920400:CDS |
| TGATGGAAAGTAAGTGGTGA+AGG | 0.590153 | 6_2:-55378737 | None:intergenic |
| ACACTAGGCATATTGAAGAT+GGG | 0.591772 | 6_2:+55381026 | Msa0920400:CDS |
| AAAGGCGGTGAAGTAAGCCT+TGG | 0.593611 | 6_2:+55378853 | Msa0920400:CDS |
| TGATATGATCTACACAGGCA+TGG | 0.605903 | 6_2:+55380907 | Msa0920400:CDS |
| TGAATCTTCCAAGTGGATGA+TGG | 0.609146 | 6_2:+55380967 | Msa0920400:CDS |
| CAGATGTGCTTGTTTCTGGT+GGG | 0.616314 | 6_2:-55380886 | None:intergenic |
| CAAGACTATGATATCTCTGG+TGG | 0.621558 | 6_2:+55378913 | Msa0920400:CDS |
| ACCAGTAGAGATGGGATCGT+CGG | 0.626036 | 6_2:-55378977 | None:intergenic |
| TTGTTGGTATTAATGACACT+AGG | 0.632962 | 6_2:+55381011 | Msa0920400:CDS |
| TCGTCGGCGCTTGTATCTCG+TGG | 0.638925 | 6_2:-55378961 | None:intergenic |
| CTGCAAGAATATACTTACAC+CGG | 0.643039 | 6_2:+55380839 | Msa0920400:CDS |
| ACAAGTTGCTGAAATCGTGA+AGG | 0.644379 | 6_2:+55378768 | Msa0920400:CDS |
| GGCAAAGAGGAAGAAACCAA+AGG | 0.645828 | 6_2:-55378716 | None:intergenic |
| AAAGGCTGATGGAAAGTAAG+TGG | 0.647467 | 6_2:-55378743 | None:intergenic |
| ACATCTGATATGATCTACAC+AGG | 0.653057 | 6_2:+55380902 | Msa0920400:CDS |
| GTGTGCAGAATCCTCCAAGT+GGG | 0.661463 | 6_2:+55379035 | Msa0920400:CDS |
| TGCAGAATCCTCCAAGTGGG+TGG | 0.669247 | 6_2:+55379038 | Msa0920400:CDS |
| GGTGTCGAAAAGTACTATGG+AGG | 0.677727 | 6_2:+55379108 | Msa0920400:CDS |
| ATATCTAAACAAGTACCAGG+TGG | 0.709715 | 6_2:-55381118 | None:intergenic |
| AGTGTGCAGAATCCTCCAAG+TGG | 0.712837 | 6_2:+55379034 | Msa0920400:CDS |
| AGTGTGCTGAATCTTCCAAG+TGG | 0.718674 | 6_2:+55380960 | Msa0920400:CDS |
| AAGAGGAAGAAACCAAAGGG+TGG | 0.730920 | 6_2:-55378712 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATACATTAAATAATGT+CGG | + | chr6_2:55379192-55379211 | Msa0920400:intron | 10.0% |
| !!! | TTTTGATAAATAAAGTTTTA+TGG | + | chr6_2:55380310-55380329 | Msa0920400:intron | 10.0% |
| !!! | CAAATATAATATCTTTTACT+AGG | - | chr6_2:55378817-55378836 | None:intergenic | 15.0% |
| !! | CTAGTAAAAGATATTATATT+TGG | + | chr6_2:55378815-55378834 | Msa0920400:CDS | 15.0% |
| !! | ATATTTATAACCATACAAAA+TGG | + | chr6_2:55379073-55379092 | Msa0920400:CDS | 15.0% |
| !!! | TTTCTTGCTTTTTTTTTATA+TGG | + | chr6_2:55379411-55379430 | Msa0920400:intron | 15.0% |
| !!! | TTACCATTATTTTTTATACA+AGG | - | chr6_2:55380044-55380063 | None:intergenic | 15.0% |
| !! | AAGAAAATAATAAACTAAGT+TGG | - | chr6_2:55380448-55380467 | None:intergenic | 15.0% |
| !!! | TACCTCCATATTTTTTAAAT+GGG | + | chr6_2:55379450-55379469 | Msa0920400:intron | 20.0% |
| !! | ATTTGCCCATTTAAAAAATA+TGG | - | chr6_2:55379458-55379477 | None:intergenic | 20.0% |
| !! | AAATTATTAGGAAAAAGATG+AGG | - | chr6_2:55379728-55379747 | None:intergenic | 20.0% |
| !! | TCTTCTATGTGAAAATTATT+AGG | - | chr6_2:55379740-55379759 | None:intergenic | 20.0% |
| !!! | TCCTATATAGTTTGATTTAA+TGG | - | chr6_2:55379983-55380002 | None:intergenic | 20.0% |
| !! | TATACAAGGTTCAAATATAA+TGG | - | chr6_2:55380030-55380049 | None:intergenic | 20.0% |
| !! | GAACCTTGTATAAAAAATAA+TGG | + | chr6_2:55380038-55380057 | Msa0920400:intron | 20.0% |
| !!! | CTTTTTATATCCTTAGTTTT+GGG | - | chr6_2:55380288-55380307 | None:intergenic | 20.0% |
| !! | TTAATGTATGTTTATGTACT+TGG | - | chr6_2:55380584-55380603 | None:intergenic | 20.0% |
| !! | TATCTTTTACTAGGAACAAT+GGG | - | chr6_2:55378808-55378827 | None:intergenic | 25.0% |
| !! | ATATCTTTTACTAGGAACAA+TGG | - | chr6_2:55378809-55378828 | None:intergenic | 25.0% |
| !! | ATCTCGTGGTATAAATTTTA+CGG | - | chr6_2:55378950-55378969 | None:intergenic | 25.0% |
| ! | AATTTATTACCAGTAGAGAT+GGG | - | chr6_2:55378988-55379007 | None:intergenic | 25.0% |
| ! | TAATTTATTACCAGTAGAGA+TGG | - | chr6_2:55378989-55379008 | None:intergenic | 25.0% |
| ! | TTATAACCATACAAAATGGT+TGG | + | chr6_2:55379077-55379096 | Msa0920400:CDS | 25.0% |
| ! | TCAACAAATACCATTCTAAA+GGG | - | chr6_2:55379291-55379310 | None:intergenic | 25.0% |
| ! | ATCAACAAATACCATTCTAA+AGG | - | chr6_2:55379292-55379311 | None:intergenic | 25.0% |
| ! | AGAAAAAAAGCAAAAAGAAC+TGG | - | chr6_2:55379369-55379388 | None:intergenic | 25.0% |
| !! | TAAAAAATATGGAGGTACAA+AGG | - | chr6_2:55379447-55379466 | None:intergenic | 25.0% |
| !!! | GTACCTCCATATTTTTTAAA+TGG | + | chr6_2:55379449-55379468 | Msa0920400:intron | 25.0% |
| !! | TATTATTTCTCGAGAAACAA+AGG | - | chr6_2:55379558-55379577 | None:intergenic | 25.0% |
| ! | GCCATTAAATCAAACTATAT+AGG | + | chr6_2:55379979-55379998 | Msa0920400:intron | 25.0% |
| ! | AAAAAATGCGATGAATTGAA+CGG | + | chr6_2:55380170-55380189 | Msa0920400:intron | 25.0% |
| !! | GCTTTTTATATCCTTAGTTT+TGG | - | chr6_2:55380289-55380308 | None:intergenic | 25.0% |
| ! | TAGAACAAGTCTATAAGTAA+AGG | + | chr6_2:55380534-55380553 | Msa0920400:intron | 25.0% |
| ! | AAGTCTATAAGTAAAGGTTT+AGG | + | chr6_2:55380540-55380559 | Msa0920400:intron | 25.0% |
| ! | TTTATTTGGCCAAATTTCTT+CGG | + | chr6_2:55380755-55380774 | Msa0920400:intron | 25.0% |
| ! | ATTAAGAAATGCAACTTCAA+AGG | - | chr6_2:55381203-55381222 | None:intergenic | 25.0% |
| ! | ATCTTTTACTAGGAACAATG+GGG | - | chr6_2:55378807-55378826 | None:intergenic | 30.0% |
| ! | TTGTATTTCCTGTTTTACCA+AGG | - | chr6_2:55378873-55378892 | None:intergenic | 30.0% |
| !! | GGAAATACAACTTGTCATTT+TGG | + | chr6_2:55378883-55378902 | Msa0920400:CDS | 30.0% |
| TTTCAAGACTATGATATCTC+TGG | + | chr6_2:55378910-55378929 | Msa0920400:CDS | 30.0% | |
| ! | TCTCGTGGTATAAATTTTAC+GGG | - | chr6_2:55378949-55378968 | None:intergenic | 30.0% |
| GAGAGGAATAATGAAGAAAA+TGG | + | chr6_2:55379225-55379244 | Msa0920400:intron | 30.0% | |
| TGCCCATTTAAAAAATATGG+AGG | - | chr6_2:55379455-55379474 | None:intergenic | 30.0% | |
| TGTACAAATATAGAACACCA+AGG | + | chr6_2:55379594-55379613 | Msa0920400:intron | 30.0% | |
| GTACAAATATAGAACACCAA+GGG | + | chr6_2:55379595-55379614 | Msa0920400:intron | 30.0% | |
| TATTAGGAAAAAGATGAGGA+CGG | - | chr6_2:55379724-55379743 | None:intergenic | 30.0% | |
| !! | TCAAGGTGTAGATTGTTTTT+GGG | - | chr6_2:55380070-55380089 | None:intergenic | 30.0% |
| CGGTAAATAATCATACCAAT+AGG | + | chr6_2:55380190-55380209 | Msa0920400:intron | 30.0% | |
| !!! | TTTTGGGTACACTTTTTCAA+CGG | - | chr6_2:55380272-55380291 | None:intergenic | 30.0% |
| ! | AAAAAGTGTACCCAAAACTA+AGG | + | chr6_2:55380275-55380294 | Msa0920400:intron | 30.0% |
| !! | CTTGGTTTGCAATCAATATA+TGG | - | chr6_2:55380566-55380585 | None:intergenic | 30.0% |
| ! | CTGGCAGCAAATATTTTATT+TGG | + | chr6_2:55380741-55380760 | Msa0920400:intron | 30.0% |
| TTGTTGGTATTAATGACACT+AGG | + | chr6_2:55381011-55381030 | Msa0920400:CDS | 30.0% | |
| GATTTCAGCAACTTGTGTAA+AGG | - | chr6_2:55378764-55378783 | None:intergenic | 35.0% | |
| GAAATCGTGAAGGATGTAAA+TGG | + | chr6_2:55378778-55378797 | Msa0920400:CDS | 35.0% | |
| TGGCCAAATTACTTCGAAAA+AGG | + | chr6_2:55378835-55378854 | Msa0920400:CDS | 35.0% | |
| CCAAATTACTTCGAAAAAGG+CGG | + | chr6_2:55378838-55378857 | Msa0920400:CDS | 35.0% | |
| ! | GTGGTATAAATTTTACGGGT+AGG | - | chr6_2:55378945-55378964 | None:intergenic | 35.0% |
| ! | GAATTTTGGATACTTGACAC+TGG | + | chr6_2:55379156-55379175 | Msa0920400:intron | 35.0% |
| !! | ATGTCGGTTCTTATATTGAG+AGG | + | chr6_2:55379208-55379227 | Msa0920400:intron | 35.0% |
| TGAAGAAAATGGAATGCGTT+TGG | + | chr6_2:55379236-55379255 | Msa0920400:intron | 35.0% | |
| ! | ACGTCAATTACCCTTTAGAA+TGG | + | chr6_2:55379278-55379297 | Msa0920400:intron | 35.0% |
| ACATCTTGTATCTTGTGCTT+GGG | - | chr6_2:55379499-55379518 | None:intergenic | 35.0% | |
| TACATCTTGTATCTTGTGCT+TGG | - | chr6_2:55379500-55379519 | None:intergenic | 35.0% | |
| TTTATGAGCAAAATTGCCCT+TGG | - | chr6_2:55379614-55379633 | None:intergenic | 35.0% | |
| GGAAAGAAAGAGAGTAACAA+TGG | + | chr6_2:55379801-55379820 | Msa0920400:intron | 35.0% | |
| AAGAAAGAGAGTAACAATGG+TGG | + | chr6_2:55379804-55379823 | Msa0920400:intron | 35.0% | |
| AGAAAGAGAGTAACAATGGT+GGG | + | chr6_2:55379805-55379824 | Msa0920400:intron | 35.0% | |
| TGAGAGAAGAGAGAAAGAAA+AGG | + | chr6_2:55379835-55379854 | Msa0920400:intron | 35.0% | |
| ! | AAGAGAGAAAGAAAAGGTAC+TGG | + | chr6_2:55379841-55379860 | Msa0920400:intron | 35.0% |
| ! | CTCAAGGTGTAGATTGTTTT+TGG | - | chr6_2:55380071-55380090 | None:intergenic | 35.0% |
| !! | CTCTCTCTCTATTTTTCTCA+AGG | - | chr6_2:55380087-55380106 | None:intergenic | 35.0% |
| GTGATATGTTGATATGTCGT+TGG | + | chr6_2:55380120-55380139 | Msa0920400:intron | 35.0% | |
| CTATGTTAATCGTTGCCTAT+TGG | - | chr6_2:55380208-55380227 | None:intergenic | 35.0% | |
| ACCTGTGAATAACAATCATG+TGG | + | chr6_2:55380403-55380422 | Msa0920400:intron | 35.0% | |
| CCTGTGAATAACAATCATGT+GGG | + | chr6_2:55380404-55380423 | Msa0920400:intron | 35.0% | |
| CTGTGAATAACAATCATGTG+GGG | + | chr6_2:55380405-55380424 | Msa0920400:intron | 35.0% | |
| TGTGAATAACAATCATGTGG+GGG | + | chr6_2:55380406-55380425 | Msa0920400:intron | 35.0% | |
| AAAGAGTGGTAAGTAACGTA+GGG | - | chr6_2:55380631-55380650 | None:intergenic | 35.0% | |
| GCATCTTGTGTAAAGGATAT+TGG | - | chr6_2:55380683-55380702 | None:intergenic | 35.0% | |
| TTGTTCAGCATCTTGTGTAA+AGG | - | chr6_2:55380690-55380709 | None:intergenic | 35.0% | |
| ! | AATAGAAACCCTTTGTTGTC+TGG | + | chr6_2:55380722-55380741 | Msa0920400:intron | 35.0% |
| CTGCAAGAATATACTTACAC+CGG | + | chr6_2:55380839-55380858 | Msa0920400:CDS | 35.0% | |
| ATATCAGATGTGCTTGTTTC+TGG | - | chr6_2:55380893-55380912 | None:intergenic | 35.0% | |
| ACATCTGATATGATCTACAC+AGG | + | chr6_2:55380902-55380921 | Msa0920400:CDS | 35.0% | |
| ATGGTAGATACAGTATGGAT+TGG | + | chr6_2:55380986-55381005 | Msa0920400:CDS | 35.0% | |
| !! | ACAGTATGGATTGGTATTGT+TGG | + | chr6_2:55380995-55381014 | Msa0920400:CDS | 35.0% |
| ACACTAGGCATATTGAAGAT+GGG | + | chr6_2:55381026-55381045 | Msa0920400:CDS | 35.0% | |
| ! | GAGAAACATTGTGAACGTTT+TGG | + | chr6_2:55381061-55381080 | Msa0920400:CDS | 35.0% |
| CAGGTGGATAAATGTTGAAT+GGG | - | chr6_2:55381105-55381124 | None:intergenic | 35.0% | |
| ATATCTAAACAAGTACCAGG+TGG | - | chr6_2:55381121-55381140 | None:intergenic | 35.0% | |
| CCAATATCTAAACAAGTACC+AGG | - | chr6_2:55381124-55381143 | None:intergenic | 35.0% | |
| CCTGGTACTTGTTTAGATAT+TGG | + | chr6_2:55381121-55381140 | Msa0920400:CDS | 35.0% | |
| TGATGAAAATGGAAAACGTC+TGG | + | chr6_2:55381153-55381172 | Msa0920400:CDS | 35.0% | |
| GCAAAGAGGAAGAAACCAAA+GGG | - | chr6_2:55378718-55378737 | None:intergenic | 40.0% | |
| TGATGGAAAGTAAGTGGTGA+AGG | - | chr6_2:55378740-55378759 | None:intergenic | 40.0% | |
| AAAGGCTGATGGAAAGTAAG+TGG | - | chr6_2:55378746-55378765 | None:intergenic | 40.0% | |
| ACAAGTTGCTGAAATCGTGA+AGG | + | chr6_2:55378768-55378787 | Msa0920400:CDS | 40.0% | |
| !!! | CCGCCTTTTTCGAAGTAATT+TGG | - | chr6_2:55378841-55378860 | None:intergenic | 40.0% |
| GAAGTAAGCCTTGGTAAAAC+AGG | + | chr6_2:55378862-55378881 | Msa0920400:CDS | 40.0% | |
| CAAGACTATGATATCTCTGG+TGG | + | chr6_2:55378913-55378932 | Msa0920400:CDS | 40.0% | |
| ! | TATGATATCTCTGGTGGTGT+TGG | + | chr6_2:55378919-55378938 | Msa0920400:CDS | 40.0% |
| ! | ATTTTTAACCACCACCCACT+TGG | - | chr6_2:55379052-55379071 | None:intergenic | 40.0% |
| ! | CAACAGCCAACCATTTTGTA+TGG | - | chr6_2:55379086-55379105 | None:intergenic | 40.0% |
| ! | ACAAAATGGTTGGCTGTTGA+TGG | + | chr6_2:55379087-55379106 | Msa0920400:CDS | 40.0% |
| !! | GATGGTGTCGAAAAGTACTA+TGG | + | chr6_2:55379105-55379124 | Msa0920400:CDS | 40.0% |
| CTATGGAGGTCTGATGATTA+TGG | + | chr6_2:55379122-55379141 | Msa0920400:intron | 40.0% | |
| !!! | TGGACGGTTGGTTTGAATTT+TGG | + | chr6_2:55379142-55379161 | Msa0920400:intron | 40.0% |
| TGGATACTTGACACTGGATA+TGG | + | chr6_2:55379162-55379181 | Msa0920400:intron | 40.0% | |
| ! | ATGGAATGCGTTTGGTCTTT+AGG | + | chr6_2:55379244-55379263 | Msa0920400:intron | 40.0% |
| ! | TGGAATGCGTTTGGTCTTTA+GGG | + | chr6_2:55379245-55379264 | Msa0920400:intron | 40.0% |
| GATGTTGATGCAGTTAGAAC+TGG | + | chr6_2:55379309-55379328 | Msa0920400:intron | 40.0% | |
| GAGAAAGGTGACAAAATCAC+AGG | - | chr6_2:55379660-55379679 | None:intergenic | 40.0% | |
| !!! | GGTACACTTTTTCAACGGTT+GGG | - | chr6_2:55380267-55380286 | None:intergenic | 40.0% |
| ! | CCCACATGATTGTTATTCAC+AGG | - | chr6_2:55380407-55380426 | None:intergenic | 40.0% |
| GTGAATAACAATCATGTGGG+GGG | + | chr6_2:55380407-55380426 | Msa0920400:intron | 40.0% | |
| ! | TTAGGGTTCATGGTTTGTCA+AGG | - | chr6_2:55380608-55380627 | None:intergenic | 40.0% |
| TGGTAAGTAACGTAGGGTTA+GGG | - | chr6_2:55380625-55380644 | None:intergenic | 40.0% | |
| GAAAGAGTGGTAAGTAACGT+AGG | - | chr6_2:55380632-55380651 | None:intergenic | 40.0% | |
| AAAGAGGAGGAAAGAAAGAG+TGG | - | chr6_2:55380645-55380664 | None:intergenic | 40.0% | |
| ! | GGATATTGGAAAGTGTGTGA+AGG | - | chr6_2:55380669-55380688 | None:intergenic | 40.0% |
| ! | ATTTGCTGCCAGACAACAAA+GGG | - | chr6_2:55380733-55380752 | None:intergenic | 40.0% |
| ! | TATTTGCTGCCAGACAACAA+AGG | - | chr6_2:55380734-55380753 | None:intergenic | 40.0% |
| ! | TTTTACTGCAAGATCTCTGC+CGG | - | chr6_2:55380861-55380880 | None:intergenic | 40.0% |
| TGATATGATCTACACAGGCA+TGG | + | chr6_2:55380907-55380926 | Msa0920400:CDS | 40.0% | |
| TGAATCTTCCAAGTGGATGA+TGG | + | chr6_2:55380967-55380986 | Msa0920400:CDS | 40.0% | |
| TGTATCTACCATCATCCACT+TGG | - | chr6_2:55380978-55380997 | None:intergenic | 40.0% | |
| ! | GGATGATGGTAGATACAGTA+TGG | + | chr6_2:55380981-55381000 | Msa0920400:CDS | 40.0% |
| GACACTAGGCATATTGAAGA+TGG | + | chr6_2:55381025-55381044 | Msa0920400:CDS | 40.0% | |
| CCAGGTGGATAAATGTTGAA+TGG | - | chr6_2:55381106-55381125 | None:intergenic | 40.0% | |
| CCATTCAACATTTATCCACC+TGG | + | chr6_2:55381103-55381122 | Msa0920400:CDS | 40.0% | |
| ! | GGAAGAGCTGATGATGAAAA+TGG | + | chr6_2:55381142-55381161 | Msa0920400:CDS | 40.0% |
| ! | CTACATTGGTTACCACCCTT+TGG | + | chr6_2:55378700-55378719 | Msa0920400:CDS | 45.0% |
| AAGAGGAAGAAACCAAAGGG+TGG | - | chr6_2:55378715-55378734 | None:intergenic | 45.0% | |
| GGCAAAGAGGAAGAAACCAA+AGG | - | chr6_2:55378719-55378738 | None:intergenic | 45.0% | |
| AGTAAGTGGTGAAGGCAAAG+AGG | - | chr6_2:55378732-55378751 | None:intergenic | 45.0% | |
| GCAACTTGTGTAAAGGCTGA+TGG | - | chr6_2:55378757-55378776 | None:intergenic | 45.0% | |
| !! | GGTGTCGAAAAGTACTATGG+AGG | + | chr6_2:55379108-55379127 | Msa0920400:CDS | 45.0% |
| GGAGGTCTGATGATTATGGA+CGG | + | chr6_2:55379126-55379145 | Msa0920400:intron | 45.0% | |
| GTCTGATGATTATGGACGGT+TGG | + | chr6_2:55379130-55379149 | Msa0920400:intron | 45.0% | |
| AGGAAAAAGATGAGGACGGA+GGG | - | chr6_2:55379720-55379739 | None:intergenic | 45.0% | |
| TAGGAAAAAGATGAGGACGG+AGG | - | chr6_2:55379721-55379740 | None:intergenic | 45.0% | |
| TGGGAGAAGAGAGTTGCATA+TGG | + | chr6_2:55379779-55379798 | Msa0920400:intron | 45.0% | |
| GGGAGAAGAGAGTTGCATAT+GGG | + | chr6_2:55379780-55379799 | Msa0920400:intron | 45.0% | |
| !!! | GGGTACACTTTTTCAACGGT+TGG | - | chr6_2:55380268-55380287 | None:intergenic | 45.0% |
| TAACGTAGGGTTAGGGTTCA+TGG | - | chr6_2:55380618-55380637 | None:intergenic | 45.0% | |
| GTGGTAAGTAACGTAGGGTT+AGG | - | chr6_2:55380626-55380645 | None:intergenic | 45.0% | |
| ! | GAAAGTGTGTGAAGGCAAAG+AGG | - | chr6_2:55380661-55380680 | None:intergenic | 45.0% |
| ACAAGATGCTGAACAAGTGC+AGG | + | chr6_2:55380694-55380713 | Msa0920400:intron | 45.0% | |
| TGGCCAAATTTCTTCGGAAC+AGG | + | chr6_2:55380761-55380780 | Msa0920400:intron | 45.0% | |
| CCACCTGTTCCGAAGAAATT+TGG | - | chr6_2:55380767-55380786 | None:intergenic | 45.0% | |
| CCAAATTTCTTCGGAACAGG+TGG | + | chr6_2:55380764-55380783 | Msa0920400:intron | 45.0% | |
| ACAGGTGGTGAAGTAAGACT+TGG | + | chr6_2:55380779-55380798 | Msa0920400:intron | 45.0% | |
| !! | CAGATGTGCTTGTTTCTGGT+GGG | - | chr6_2:55380889-55380908 | None:intergenic | 45.0% |
| !! | TCAGATGTGCTTGTTTCTGG+TGG | - | chr6_2:55380890-55380909 | None:intergenic | 45.0% |
| AGTGTGCTGAATCTTCCAAG+TGG | + | chr6_2:55380960-55380979 | Msa0920400:CDS | 45.0% | |
| AAAGGCGGTGAAGTAAGCCT+TGG | + | chr6_2:55378853-55378872 | Msa0920400:CDS | 50.0% | |
| ACCAGTAGAGATGGGATCGT+CGG | - | chr6_2:55378980-55378999 | None:intergenic | 50.0% | |
| TTGGAGGATTCTGCACACTC+TGG | - | chr6_2:55379033-55379052 | None:intergenic | 50.0% | |
| AGTGTGCAGAATCCTCCAAG+TGG | + | chr6_2:55379034-55379053 | Msa0920400:CDS | 50.0% | |
| GTGTGCAGAATCCTCCAAGT+GGG | + | chr6_2:55379035-55379054 | Msa0920400:CDS | 50.0% | |
| TTTAACCACCACCCACTTGG+AGG | - | chr6_2:55379049-55379068 | None:intergenic | 50.0% | |
| ! | AGGTGACGGTCTAGAGAGAA+AGG | - | chr6_2:55379675-55379694 | None:intergenic | 50.0% |
| GAAGAAAGCGACGAGATCAG+CGG | + | chr6_2:55379755-55379774 | Msa0920400:intron | 50.0% | |
| GGTTGGGACGATAAAGAGCA+CGG | - | chr6_2:55380251-55380270 | None:intergenic | 50.0% | |
| ! | CATGTGGGGGGCATGAATAT+TGG | + | chr6_2:55380419-55380438 | Msa0920400:intron | 50.0% |
| AGTGTGTGAAGGCAAAGAGG+AGG | - | chr6_2:55380658-55380677 | None:intergenic | 50.0% | |
| TGCAGAATCCTCCAAGTGGG+TGG | + | chr6_2:55379038-55379057 | Msa0920400:CDS | 55.0% | |
| AGAATCCTCCAAGTGGGTGG+TGG | + | chr6_2:55379041-55379060 | Msa0920400:CDS | 55.0% | |
| AAAGCGACGAGATCAGCGGA+TGG | + | chr6_2:55379759-55379778 | Msa0920400:intron | 55.0% | |
| AAGCGACGAGATCAGCGGAT+GGG | + | chr6_2:55379760-55379779 | Msa0920400:intron | 55.0% | |
| ! | GGACGATAAAGAGCACGGTG+TGG | - | chr6_2:55380246-55380265 | None:intergenic | 55.0% |
| TCGTCGGCGCTTGTATCTCG+TGG | - | chr6_2:55378964-55378983 | None:intergenic | 60.0% | |
| GCCGACGATCCCATCTCTAC+TGG | + | chr6_2:55378976-55378995 | Msa0920400:CDS | 60.0% | |
| AGACCGTCACCTCTCTCCCT+CGG | + | chr6_2:55379683-55379702 | Msa0920400:intron | 60.0% | |
| AGACCGAGGGAGAGAGGTGA+CGG | - | chr6_2:55379689-55379708 | None:intergenic | 60.0% | |
| TGATGCAGACCGAGGGAGAG+AGG | - | chr6_2:55379695-55379714 | None:intergenic | 60.0% | |
| ! | GAGGGTGTGATGCAGACCGA+GGG | - | chr6_2:55379702-55379721 | None:intergenic | 60.0% |
| ! | GGAGGGTGTGATGCAGACCG+AGG | - | chr6_2:55379703-55379722 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 55378700 | 55381234 | 55378700 | ID=Msa0920400;Name=Msa0920400 |
| chr6_2 | mRNA | 55378700 | 55381234 | 55378700 | ID=Msa0920400-mRNA-1;Parent=Msa0920400;Name=Msa0920400-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|2|0|283 |
| chr6_2 | exon | 55378700 | 55379129 | 55378700 | ID=Msa0920400-mRNA-1:exon:8214;Parent=Msa0920400-mRNA-1 |
| chr6_2 | exon | 55380813 | 55381234 | 55380813 | ID=Msa0920400-mRNA-1:exon:8215;Parent=Msa0920400-mRNA-1 |
| chr6_2 | CDS | 55378700 | 55379129 | 55378700 | ID=Msa0920400-mRNA-1:cds;Parent=Msa0920400-mRNA-1 |
| chr6_2 | CDS | 55380813 | 55381234 | 55380813 | ID=Msa0920400-mRNA-1:cds;Parent=Msa0920400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
