AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1323120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323120 MtrunA17_Chr1g0178161 95.918 196 8 0 1 196 1 196 2.06e-120 338
Msa1323120 MtrunA17_Chr1g0178191 77.041 196 43 1 1 196 1 194 2.52e-93 270
Msa1323120 MtrunA17_Chr1g0178181 80.102 196 38 1 1 196 1 195 9.05e-92 266
Msa1323120 MtrunA17_Chr2g0321671 52.857 210 83 1 2 195 10 219 1.81e-59 185
Msa1323120 MtrunA17_Chr7g0217691 45.263 190 100 1 7 196 1 186 2.62e-52 166
Msa1323120 MtrunA17_Chr4g0042551 42.197 173 100 0 23 195 44 216 2.93e-47 154
Msa1323120 MtrunA17_Chr5g0417761 40.722 194 102 2 4 196 5 186 1.15e-41 139
Msa1323120 MtrunA17_Chr4g0021111 34.615 156 87 4 37 189 7 150 3.16e-18 77.8
Msa1323120 MtrunA17_Chr2g0303151 34.167 120 73 3 73 189 69 185 1.27e-12 63.9
Msa1323120 MtrunA17_Chr3g0109681 27.564 156 96 3 42 193 49 191 3.74e-11 60.1
Msa1323120 MtrunA17_Chr8g0381001 29.114 158 99 4 42 189 30 184 5.02e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1323120 AT2G36100.1 54.950 202 84 2 2 196 5 206 3.36e-68 207
Msa1323120 AT3G11550.1 60.500 200 74 1 2 196 5 204 2.83e-64 197
Msa1323120 AT2G27370.1 55.978 184 74 1 12 195 43 219 7.01e-64 197
Msa1323120 AT5G06200.1 58.586 198 77 2 2 195 5 201 1.07e-63 196
Msa1323120 AT5G15290.1 44.000 150 84 0 27 176 17 166 4.72e-44 145
Msa1323120 AT1G14160.1 40.000 165 99 0 32 196 45 209 8.61e-42 140
Msa1323120 AT1G03700.1 30.769 169 99 3 21 189 1 151 2.00e-17 76.3
Msa1323120 AT1G17200.1 26.984 189 125 5 9 193 2 181 2.42e-14 68.9
Msa1323120 AT4G03540.1 32.258 124 75 2 55 178 26 140 1.09e-13 66.2
Msa1323120 AT3G06390.1 27.820 133 91 2 38 165 37 169 5.83e-11 59.7

Find 42 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCCATTTGCAACCAATT+TGG 0.187527 8_4:-31111501 Msa1323120:CDS
GTTGGTTGTGATGTCTTCTT+TGG 0.281389 8_4:-31111412 Msa1323120:CDS
GTGATGTCTTCTTTGGCTCT+TGG 0.299534 8_4:-31111405 Msa1323120:CDS
TCTTAGAACAAAATCCATTA+TGG 0.318159 8_4:+31112568 None:intergenic
ATGATGGTTACTATGGAAAA+TGG 0.329026 8_4:+31112159 None:intergenic
TGATGTCTTCTTTGGCTCTT+GGG 0.348436 8_4:-31111404 Msa1323120:CDS
AGCAGCTGCCATGGTTTACT+TGG 0.359773 8_4:-31111553 Msa1323120:CDS
GGCATTTGTGGGTGGCTACC+TGG 0.401958 8_4:-31112193 Msa1323120:CDS
AATGTCAACCACTATTGATA+TGG 0.415102 8_4:-31112675 Msa1323120:CDS
AGGGCGAATGATGGTTACTA+TGG 0.422728 8_4:+31112152 None:intergenic
CATAACTAGCTTCAAATTGA+AGG 0.426220 8_4:+31112465 None:intergenic
ATTGGAGCCACTGCAAGGCC+TGG 0.429435 8_4:-31112611 Msa1323120:CDS
ATGGCAATCAAGACTCAAAC+TGG 0.433393 8_4:-31111524 Msa1323120:CDS
ATCTCCAAATTGGTTGCAAA+TGG 0.439108 8_4:+31111497 None:intergenic
TGTTATTGCAATGGCATTTG+TGG 0.446696 8_4:-31112205 Msa1323120:CDS
GTTATTGCAATGGCATTTGT+GGG 0.458726 8_4:-31112204 Msa1323120:CDS
ATCATTCGCCCTCATGCACC+TGG 0.484461 8_4:-31112141 Msa1323120:CDS
TGGTTACTATGGAAAATGGT+AGG 0.486275 8_4:+31112163 None:intergenic
TGGTGCTTCAGCAGCTGCCA+TGG 0.489524 8_4:-31111562 Msa1323120:CDS
TGAAGGAACTGAGTGAAGAA+AGG 0.493692 8_4:+31112482 None:intergenic
TGACTCTGCCATATCAATAG+TGG 0.510355 8_4:+31112667 None:intergenic
CCACTGCAAGGCCTGGAGGA+TGG 0.524990 8_4:-31112604 Msa1323120:CDS
TGCAGCAAGAGAAGCTGCTA+TGG 0.527344 8_4:+31112538 None:intergenic
CCATCCTCCAGGCCTTGCAG+TGG 0.532661 8_4:+31112604 None:intergenic
ATGAGGAAAAGCCTTGGTCC+AGG 0.542585 8_4:+31112123 None:intergenic
CTTTAATTGGAGCCACTGCA+AGG 0.554612 8_4:-31112616 Msa1323120:CDS
GGTTACTATGGAAAATGGTA+GGG 0.561081 8_4:+31112164 None:intergenic
AGCCTTGGTCCAGGTGCATG+AGG 0.573726 8_4:+31112132 None:intergenic
AGGTGCATGAGGGCGAATGA+TGG 0.573876 8_4:+31112143 None:intergenic
GCCCTCATGCACCTGGACCA+AGG 0.587519 8_4:-31112134 Msa1323120:CDS
TGCTGAAGCACCACTAGCAG+TGG 0.592321 8_4:+31111572 None:intergenic
AATCTGATCACTAGTTGCCA+TGG 0.596028 8_4:+31112508 None:intergenic
ATTGCAATGGCATTTGTGGG+TGG 0.596308 8_4:-31112201 Msa1323120:CDS
ATGACATTAGCCACTGCTAG+TGG 0.602800 8_4:-31111582 Msa1323120:CDS
ATGGTTTACTTGGCACACAA+TGG 0.608727 8_4:-31111543 Msa1323120:CDS
GCGATGATGAGGAAAAGCCT+TGG 0.613791 8_4:+31112117 None:intergenic
GCCTTGGTCCAGGTGCATGA+GGG 0.623258 8_4:+31112133 None:intergenic
GGAGCCACTGCAAGGCCTGG+AGG 0.665040 8_4:-31112608 Msa1323120:CDS
TTACTGTGTCTGCGATGATG+AGG 0.667059 8_4:+31112106 None:intergenic
TCTTGCTGCAACTATCACCA+TGG 0.694318 8_4:-31112525 Msa1323120:CDS
AAAATGGTAGGGATAAGACC+AGG 0.708096 8_4:+31112175 None:intergenic
ATTGTGTGCCAAGTAAACCA+TGG 0.791669 8_4:+31111545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTTGTTTAAGTTAG+AGG + chr8_4:31111665-31111684 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG + chr8_4:31111996-31112015 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG + chr8_4:31112004-31112023 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG + chr8_4:31112047-31112066 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG + chr8_4:31112048-31112067 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG + chr8_4:31112153-31112172 None:intergenic 15.0%
!!! AGAAACTATTATTTTAAAAG+TGG - chr8_4:31112377-31112396 Msa1323120:intron 15.0%
!!! AAATTATTTGTTTAAGTTAG+AGG + chr8_4:31111665-31111684 None:intergenic 15.0%
!! TAAGAATTAATTAGGAAATT+AGG + chr8_4:31111996-31112015 None:intergenic 15.0%
!! ACTCTAATTAAGAATTAATT+AGG + chr8_4:31112004-31112023 None:intergenic 15.0%
!! TCATGTAAAAAAAATTTGAA+GGG + chr8_4:31112047-31112066 None:intergenic 15.0%
!! TTCATGTAAAAAAAATTTGA+AGG + chr8_4:31112048-31112067 None:intergenic 15.0%
!! AAAAAAAATCAATAAAGCAA+TGG + chr8_4:31112153-31112172 None:intergenic 15.0%
!!! AGAAACTATTATTTTAAAAG+TGG - chr8_4:31112377-31112396 Msa1323120:intron 15.0%
!! AATGTTTATTGTAAATATGC+AGG - chr8_4:31111836-31111855 Msa1323120:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG - chr8_4:31112063-31112082 Msa1323120:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG - chr8_4:31112348-31112367 Msa1323120:intron 20.0%
!! AATGTTTATTGTAAATATGC+AGG - chr8_4:31111836-31111855 Msa1323120:intron 20.0%
!! ATGAACATATATATTCTAGT+AGG - chr8_4:31112063-31112082 Msa1323120:intron 20.0%
!!! GTTAAGTACTTTTAAAAAAC+TGG - chr8_4:31112348-31112367 Msa1323120:intron 20.0%
!! AATGAAAAAGCTGCTTTAAT+TGG - chr8_4:31111440-31111459 Msa1323120:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG + chr8_4:31111504-31111523 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG - chr8_4:31111506-31111525 Msa1323120:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG + chr8_4:31112132-31112151 None:intergenic 25.0%
! AATGAGGAAATGAACTATTA+AGG - chr8_4:31112263-31112282 Msa1323120:intron 25.0%
!! AATGAAAAAGCTGCTTTAAT+TGG - chr8_4:31111440-31111459 Msa1323120:CDS 25.0%
! TCTTAGAACAAAATCCATTA+TGG + chr8_4:31111504-31111523 None:intergenic 25.0%
!!! ATGGATTTTGTTCTAAGATT+AGG - chr8_4:31111506-31111525 Msa1323120:CDS 25.0%
! GGTCATTTGAAAATAAATAG+AGG + chr8_4:31112132-31112151 None:intergenic 25.0%
! AATGAGGAAATGAACTATTA+AGG - chr8_4:31112263-31112282 Msa1323120:intron 25.0%
! CATAACTAGCTTCAAATTGA+AGG + chr8_4:31111607-31111626 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG + chr8_4:31111699-31111718 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG + chr8_4:31111710-31111729 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG + chr8_4:31111730-31111749 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG - chr8_4:31111855-31111874 Msa1323120:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG + chr8_4:31111913-31111932 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG - chr8_4:31112106-31112125 Msa1323120:intron 30.0%
GAAGATAAATTGCTACAATG+AGG - chr8_4:31112247-31112266 Msa1323120:intron 30.0%
TAATGTCATAAACACCTACA+CGG + chr8_4:31112476-31112495 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG - chr8_4:31112633-31112652 Msa1323120:CDS 30.0%
! CATAACTAGCTTCAAATTGA+AGG + chr8_4:31111607-31111626 None:intergenic 30.0%
! AATACACCTAGGTTTTACAA+TGG + chr8_4:31111699-31111718 None:intergenic 30.0%
TGGACTAAATAAATACACCT+AGG + chr8_4:31111710-31111729 None:intergenic 30.0%
! GTGTAGTTCAAATTTTGTGT+TGG + chr8_4:31111730-31111749 None:intergenic 30.0%
!!! CAGGTTTTTTGTTATTGCAA+TGG - chr8_4:31111855-31111874 Msa1323120:intron 30.0%
ATGATGGTTACTATGGAAAA+TGG + chr8_4:31111913-31111932 None:intergenic 30.0%
ATTACTCCTTGTGTTTCTTT+CGG - chr8_4:31112106-31112125 Msa1323120:intron 30.0%
GAAGATAAATTGCTACAATG+AGG - chr8_4:31112247-31112266 Msa1323120:intron 30.0%
TAATGTCATAAACACCTACA+CGG + chr8_4:31112476-31112495 None:intergenic 30.0%
!!! TATTGCTGTGGTTGTTTTAA+TGG - chr8_4:31112633-31112652 Msa1323120:CDS 30.0%
! GAAAAAAGGCATAGCCATAA+TGG - chr8_4:31111487-31111506 Msa1323120:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG + chr8_4:31111646-31111665 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG - chr8_4:31111864-31111883 Msa1323120:intron 35.0%
GTTATTGCAATGGCATTTGT+GGG - chr8_4:31111865-31111884 Msa1323120:intron 35.0%
GGTTACTATGGAAAATGGTA+GGG + chr8_4:31111908-31111927 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG + chr8_4:31111909-31111928 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG - chr8_4:31112459-31112478 Msa1323120:CDS 35.0%
ATCTCCAAATTGGTTGCAAA+TGG + chr8_4:31112575-31112594 None:intergenic 35.0%
GAGCACAAAAATCTCCAAAT+TGG + chr8_4:31112585-31112604 None:intergenic 35.0%
! GATTTTTGTGCTCAAACAAG+TGG - chr8_4:31112592-31112611 Msa1323120:CDS 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG - chr8_4:31112621-31112640 Msa1323120:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG - chr8_4:31112639-31112658 Msa1323120:CDS 35.0%
! GAAAAAAGGCATAGCCATAA+TGG - chr8_4:31111487-31111506 Msa1323120:CDS 35.0%
GAGGTTTAAATGTGACATAC+TGG + chr8_4:31111646-31111665 None:intergenic 35.0%
TGTTATTGCAATGGCATTTG+TGG - chr8_4:31111864-31111883 Msa1323120:intron 35.0%
GTTATTGCAATGGCATTTGT+GGG - chr8_4:31111865-31111884 Msa1323120:intron 35.0%
GGTTACTATGGAAAATGGTA+GGG + chr8_4:31111908-31111927 None:intergenic 35.0%
TGGTTACTATGGAAAATGGT+AGG + chr8_4:31111909-31111928 None:intergenic 35.0%
! AAACTCAAACTTTTCCGTGT+AGG - chr8_4:31112459-31112478 Msa1323120:CDS 35.0%
ATCTCCAAATTGGTTGCAAA+TGG + chr8_4:31112575-31112594 None:intergenic 35.0%
GAGCACAAAAATCTCCAAAT+TGG + chr8_4:31112585-31112604 None:intergenic 35.0%
! GATTTTTGTGCTCAAACAAG+TGG - chr8_4:31112592-31112611 Msa1323120:CDS 35.0%
!! TGTGTCATGTTTTATTGCTG+TGG - chr8_4:31112621-31112640 Msa1323120:CDS 35.0%
!!! TGTGGTTGTTTTAATGGTGT+TGG - chr8_4:31112639-31112658 Msa1323120:CDS 35.0%
TGACTCTGCCATATCAATAG+TGG + chr8_4:31111405-31111424 None:intergenic 40.0%
AATCTGATCACTAGTTGCCA+TGG + chr8_4:31111564-31111583 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG + chr8_4:31111590-31111609 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG + chr8_4:31111695-31111714 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG + chr8_4:31111696-31111715 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG + chr8_4:31111897-31111916 None:intergenic 40.0%
ATTGTGTGCCAAGTAAACCA+TGG + chr8_4:31112527-31112546 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+TGG - chr8_4:31112526-31112545 Msa1323120:CDS 40.0%
ATGGCAATCAAGACTCAAAC+TGG - chr8_4:31112545-31112564 Msa1323120:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG - chr8_4:31112568-31112587 Msa1323120:CDS 40.0%
GTTGGTTGTGATGTCTTCTT+TGG - chr8_4:31112657-31112676 Msa1323120:CDS 40.0%
!! TGATGTCTTCTTTGGCTCTT+GGG - chr8_4:31112665-31112684 Msa1323120:CDS 40.0%
TGACTCTGCCATATCAATAG+TGG + chr8_4:31111405-31111424 None:intergenic 40.0%
AATCTGATCACTAGTTGCCA+TGG + chr8_4:31111564-31111583 None:intergenic 40.0%
TGAAGGAACTGAGTGAAGAA+AGG + chr8_4:31111590-31111609 None:intergenic 40.0%
! CACCTAGGTTTTACAATGGA+GGG + chr8_4:31111695-31111714 None:intergenic 40.0%
! ACACCTAGGTTTTACAATGG+AGG + chr8_4:31111696-31111715 None:intergenic 40.0%
AAAATGGTAGGGATAAGACC+AGG + chr8_4:31111897-31111916 None:intergenic 40.0%
ATTGTGTGCCAAGTAAACCA+TGG + chr8_4:31112527-31112546 None:intergenic 40.0%
ATGGTTTACTTGGCACACAA+TGG - chr8_4:31112526-31112545 Msa1323120:CDS 40.0%
ATGGCAATCAAGACTCAAAC+TGG - chr8_4:31112545-31112564 Msa1323120:CDS 40.0%
! CTTGCCATTTGCAACCAATT+TGG - chr8_4:31112568-31112587 Msa1323120:CDS 40.0%
GTTGGTTGTGATGTCTTCTT+TGG - chr8_4:31112657-31112676 Msa1323120:CDS 40.0%
!! TGATGTCTTCTTTGGCTCTT+GGG - chr8_4:31112665-31112684 Msa1323120:CDS 40.0%
CTTTAATTGGAGCCACTGCA+AGG - chr8_4:31111453-31111472 Msa1323120:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG + chr8_4:31111479-31111498 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG - chr8_4:31111544-31111563 Msa1323120:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG - chr8_4:31111690-31111709 Msa1323120:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG - chr8_4:31111868-31111887 Msa1323120:intron 45.0%
AGGGCGAATGATGGTTACTA+TGG + chr8_4:31111920-31111939 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG + chr8_4:31111966-31111985 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG + chr8_4:31112115-31112134 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG - chr8_4:31112487-31112506 Msa1323120:CDS 45.0%
!! GTGATGTCTTCTTTGGCTCT+TGG - chr8_4:31112664-31112683 Msa1323120:CDS 45.0%
CTTTAATTGGAGCCACTGCA+AGG - chr8_4:31111453-31111472 Msa1323120:CDS 45.0%
!!! ATGCCTTTTTTCCATCCTCC+AGG + chr8_4:31111479-31111498 None:intergenic 45.0%
TCTTGCTGCAACTATCACCA+TGG - chr8_4:31111544-31111563 Msa1323120:CDS 45.0%
CTCCCTCCATTGTAAAACCT+AGG - chr8_4:31111690-31111709 Msa1323120:intron 45.0%
ATTGCAATGGCATTTGTGGG+TGG - chr8_4:31111868-31111887 Msa1323120:intron 45.0%
AGGGCGAATGATGGTTACTA+TGG + chr8_4:31111920-31111939 None:intergenic 45.0%
TTACTGTGTCTGCGATGATG+AGG + chr8_4:31111966-31111985 None:intergenic 45.0%
TAGAGGCCGAAAGAAACACA+AGG + chr8_4:31112115-31112134 None:intergenic 45.0%
ATGACATTAGCCACTGCTAG+TGG - chr8_4:31112487-31112506 Msa1323120:CDS 45.0%
!! GTGATGTCTTCTTTGGCTCT+TGG - chr8_4:31112664-31112683 Msa1323120:CDS 45.0%
AGGCCTGGAGGATGGAAAAA+AGG - chr8_4:31111473-31111492 Msa1323120:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG + chr8_4:31111534-31111553 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG + chr8_4:31111949-31111968 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG + chr8_4:31111955-31111974 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG - chr8_4:31112516-31112535 Msa1323120:CDS 50.0%
AGGCCTGGAGGATGGAAAAA+AGG - chr8_4:31111473-31111492 Msa1323120:CDS 50.0%
TGCAGCAAGAGAAGCTGCTA+TGG + chr8_4:31111534-31111553 None:intergenic 50.0%
ATGAGGAAAAGCCTTGGTCC+AGG + chr8_4:31111949-31111968 None:intergenic 50.0%
GCGATGATGAGGAAAAGCCT+TGG + chr8_4:31111955-31111974 None:intergenic 50.0%
AGCAGCTGCCATGGTTTACT+TGG - chr8_4:31112516-31112535 Msa1323120:CDS 50.0%
AGGTGCATGAGGGCGAATGA+TGG + chr8_4:31111929-31111948 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG - chr8_4:31111928-31111947 Msa1323120:intron 55.0%
! TGCTGAAGCACCACTAGCAG+TGG + chr8_4:31112500-31112519 None:intergenic 55.0%
AGGTGCATGAGGGCGAATGA+TGG + chr8_4:31111929-31111948 None:intergenic 55.0%
ATCATTCGCCCTCATGCACC+TGG - chr8_4:31111928-31111947 Msa1323120:intron 55.0%
! TGCTGAAGCACCACTAGCAG+TGG + chr8_4:31112500-31112519 None:intergenic 55.0%
ATTGGAGCCACTGCAAGGCC+TGG - chr8_4:31111458-31111477 Msa1323120:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG - chr8_4:31111876-31111895 Msa1323120:intron 60.0%
GCCTTGGTCCAGGTGCATGA+GGG + chr8_4:31111939-31111958 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG + chr8_4:31111940-31111959 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG - chr8_4:31112507-31112526 Msa1323120:CDS 60.0%
ATTGGAGCCACTGCAAGGCC+TGG - chr8_4:31111458-31111477 Msa1323120:CDS 60.0%
GGCATTTGTGGGTGGCTACC+TGG - chr8_4:31111876-31111895 Msa1323120:intron 60.0%
GCCTTGGTCCAGGTGCATGA+GGG + chr8_4:31111939-31111958 None:intergenic 60.0%
AGCCTTGGTCCAGGTGCATG+AGG + chr8_4:31111940-31111959 None:intergenic 60.0%
TGGTGCTTCAGCAGCTGCCA+TGG - chr8_4:31112507-31112526 Msa1323120:CDS 60.0%
CCATCCTCCAGGCCTTGCAG+TGG + chr8_4:31111468-31111487 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG - chr8_4:31111465-31111484 Msa1323120:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG - chr8_4:31111935-31111954 Msa1323120:intron 65.0%
CCATCCTCCAGGCCTTGCAG+TGG + chr8_4:31111468-31111487 None:intergenic 65.0%
CCACTGCAAGGCCTGGAGGA+TGG - chr8_4:31111465-31111484 Msa1323120:CDS 65.0%
GCCCTCATGCACCTGGACCA+AGG - chr8_4:31111935-31111954 Msa1323120:intron 65.0%
GGAGCCACTGCAAGGCCTGG+AGG - chr8_4:31111461-31111480 Msa1323120:CDS 70.0%
GGAGCCACTGCAAGGCCTGG+AGG - chr8_4:31111461-31111480 Msa1323120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 31111395 31112696 31111395 ID=Msa1323120;Name=Msa1323120
chr8_4 mRNA 31111395 31112696 31111395 ID=Msa1323120-mRNA-1;Parent=Msa1323120;Name=Msa1323120-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|196
chr8_4 exon 31112446 31112696 31112446 ID=Msa1323120-mRNA-1:exon:10178;Parent=Msa1323120-mRNA-1
chr8_4 exon 31112110 31112233 31112110 ID=Msa1323120-mRNA-1:exon:10177;Parent=Msa1323120-mRNA-1
chr8_4 exon 31111395 31111610 31111395 ID=Msa1323120-mRNA-1:exon:10176;Parent=Msa1323120-mRNA-1
chr8_4 CDS 31112446 31112696 31112446 ID=Msa1323120-mRNA-1:cds;Parent=Msa1323120-mRNA-1
chr8_4 CDS 31112110 31112233 31112110 ID=Msa1323120-mRNA-1:cds;Parent=Msa1323120-mRNA-1
chr8_4 CDS 31111395 31111610 31111395 ID=Msa1323120-mRNA-1:cds;Parent=Msa1323120-mRNA-1
Gene Sequence

>Msa1323120

ATGTCAACCACTATTGATATGGCAGAGTCAAGCAACGCTCATGTTAATGAAAAAGCTGCTTTAATTGGAGCCACTGCAAGGCCTGGAGGATGGAAAAAAGGCATAGCCATAATGGATTTTGTTCTAAGATTAGGTGCCATAGCAGCTTCTCTTGCTGCAACTATCACCATGGCAACTAGTGATCAGATTCTTCCTTTCTTCACTCAGTTCCTTCAATTTGAAGCTAGTTATGATAGCTTTTCAACTTTCCAGTTTTTTGTTATTGCAATGGCATTTGTGGGTGGCTACCTGGTCTTATCCCTACCATTTTCCATAGTAACCATCATTCGCCCTCATGCACCTGGACCAAGGCTTTTCCTCATCATCGCAGACACAGTGTTTATGACATTAGCCACTGCTAGTGGTGCTTCAGCAGCTGCCATGGTTTACTTGGCACACAATGGCAATCAAGACTCAAACTGGCTTGCCATTTGCAACCAATTTGGAGATTTTTGTGCTCAAACAAGTGGAGCAGTTGTGTCATGTTTTATTGCTGTGGTTGTTTTAATGGTGTTGGTTGTGATGTCTTCTTTGGCTCTTGGGAAGCATTGA

Protein sequence

>Msa1323120

MSTTIDMAESSNAHVNEKAALIGATARPGGWKKGIAIMDFVLRLGAIAASLAATITMATSDQILPFFTQFLQFEASYDSFSTFQFFVIAMAFVGGYLVLSLPFSIVTIIRPHAPGPRLFLIIADTVFMTLATASGASAAAMVYLAHNGNQDSNWLAICNQFGDFCAQTSGAVVSCFIAVVVLMVLVVMSSLALGKH*