Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417840 | sp|P42044|HEMH_CUCSA | 64.403 | 486 | 112 | 7 | 17 | 471 | 33 | 488 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417840 | G7J7L6 | 88.129 | 497 | 9 | 4 | 1 | 473 | 1 | 471 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029020 | Msa1417840 | 0.801532 | 8.613277e-49 | -8.615850e-47 |
| Msa1417840 | Msa1445430 | 0.983483 | 7.226397e-158 | -8.615850e-47 |
| Msa0725480 | Msa1417840 | 0.800006 | 1.764671e-48 | -8.615850e-47 |
| Msa0381630 | Msa1417840 | 0.967983 | 4.909444e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417840 | MtrunA17_Chr3g0135611 | 88.129 | 497 | 9 | 4 | 1 | 473 | 1 | 471 | 0.0 | 854 |
| Msa1417840 | MtrunA17_Chr4g0008821 | 80.242 | 496 | 40 | 4 | 2 | 473 | 13 | 474 | 0.0 | 756 |
| Msa1417840 | MtrunA17_Chr3g0131031 | 55.432 | 451 | 146 | 5 | 4 | 427 | 22 | 444 | 1.86e-164 | 474 |
| Msa1417840 | MtrunA17_Chr8g0385271 | 55.079 | 443 | 145 | 4 | 10 | 427 | 31 | 444 | 1.40e-163 | 472 |
| Msa1417840 | MtrunA17_Chr7g0235891 | 55.224 | 67 | 28 | 1 | 361 | 427 | 75 | 139 | 1.65e-13 | 67.8 |
| Msa1417840 | MtrunA17_Chr4g0045871 | 64.444 | 45 | 14 | 1 | 390 | 432 | 5 | 49 | 7.59e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417840 | AT5G26030.1 | 60.879 | 478 | 128 | 8 | 21 | 470 | 19 | 465 | 0.0 | 558 |
| Msa1417840 | AT5G26030.2 | 60.879 | 478 | 128 | 8 | 21 | 470 | 19 | 465 | 0.0 | 558 |
| Msa1417840 | AT2G30390.1 | 63.277 | 354 | 83 | 2 | 98 | 427 | 100 | 430 | 1.04e-157 | 457 |
| Msa1417840 | AT2G30390.2 | 61.538 | 364 | 83 | 2 | 98 | 427 | 100 | 440 | 8.09e-156 | 452 |
Find 145 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACTCTTCACACCTTTC+TGG | 0.158781 | tig0024530:+31537 | None:intergenic |
| CCTGAACGCAGTTATCATTT+TGG | 0.188485 | tig0024530:+31130 | None:intergenic |
| GCATATGCTTCCTTGGATTT+AGG | 0.213761 | tig0024530:+33208 | None:intergenic |
| TGAGCACGCTCTTGCTTATC+AGG | 0.255136 | tig0024530:-31780 | Msa1417840:CDS |
| GAACATATTCGTTCGTGATT+TGG | 0.259393 | tig0024530:-35168 | Msa1417840:five_prime_UTR |
| ATCTTGGCGAAGTATTTAAC+TGG | 0.311532 | tig0024530:+31194 | None:intergenic |
| ACTAGGACTTCATCTGTATA+TGG | 0.311851 | tig0024530:+31569 | None:intergenic |
| TGAGCGAGAAACTAAGTTTC+TGG | 0.314149 | tig0024530:+34558 | None:intergenic |
| TGGGTCAAGCATCAGTGTTC+TGG | 0.320253 | tig0024530:-32429 | Msa1417840:CDS |
| TTGAATCTGGCATCAAGAAT+TGG | 0.321498 | tig0024530:-31346 | Msa1417840:CDS |
| TTGATACCAAGAGTTTATAA+TGG | 0.330575 | tig0024530:+32248 | None:intergenic |
| ACATCTATGAAATCAAATTC+AGG | 0.348405 | tig0024530:+31082 | None:intergenic |
| AGTACAAGTGGTAAACTGTT+TGG | 0.352485 | tig0024530:+30900 | None:intergenic |
| TGGGCACGTGTCCCGGCTCT+TGG | 0.364586 | tig0024530:-31326 | Msa1417840:CDS |
| TCTGGTGCCAATTCTTGTAT+TGG | 0.377066 | tig0024530:+34576 | None:intergenic |
| ATCAAAGAGAAGGTTATATT+AGG | 0.378881 | tig0024530:-32230 | Msa1417840:intron |
| GGCTCGACCAATACAAGAAT+TGG | 0.380637 | tig0024530:-34583 | Msa1417840:CDS |
| GGGTGAGGAAGGAAGGAATA+TGG | 0.385660 | tig0024530:+35094 | None:intergenic |
| TACCAGCACCTCTGAAGATA+TGG | 0.387408 | tig0024530:-31225 | Msa1417840:CDS |
| GCAACACACCAACTTTATCT+TGG | 0.387419 | tig0024530:+34470 | None:intergenic |
| TTCGGCTCCCAAGATTGTTT+CGG | 0.387788 | tig0024530:-33276 | Msa1417840:CDS |
| AGGGAATTGGCTCTTGAATC+TGG | 0.388268 | tig0024530:-31359 | Msa1417840:CDS |
| CAGTAGTGGATATAGAAAAC+TGG | 0.391052 | tig0024530:+32450 | None:intergenic |
| AAGGAAGCATATGCTTCTAT+TGG | 0.393699 | tig0024530:-33199 | Msa1417840:CDS |
| GATTTGAGCTTGAGCAGAGC+TGG | 0.405773 | tig0024530:-31716 | Msa1417840:CDS |
| GTACAAGTGGTAAACTGTTT+GGG | 0.408812 | tig0024530:+30901 | None:intergenic |
| AATAGAAGCATATGCTTCCT+TGG | 0.409366 | tig0024530:+33201 | None:intergenic |
| TGGAGAAACCGAAACAATCT+TGG | 0.415074 | tig0024530:+33268 | None:intergenic |
| CAAGAGTTTATAATGGAAAC+AGG | 0.416911 | tig0024530:+32255 | None:intergenic |
| TGAATCTGGCATCAAGAATT+GGG | 0.420289 | tig0024530:-31345 | Msa1417840:CDS |
| TGCAGGCACTTGCACTTAAG+AGG | 0.422306 | tig0024530:-32783 | Msa1417840:intron |
| TGAACATCGTCCAGCGTCTC+TGG | 0.424583 | tig0024530:+34430 | None:intergenic |
| CCAAAATGATAACTGCGTTC+AGG | 0.426212 | tig0024530:-31130 | Msa1417840:CDS |
| TTGAAAATCTGCGGCGATGA+AGG | 0.429694 | tig0024530:+34974 | None:intergenic |
| TGACATGGAGTACAGGGAAT+TGG | 0.432816 | tig0024530:-31372 | Msa1417840:CDS |
| GTGTTCTGGAGCAAACGTTC+AGG | 0.435038 | tig0024530:-32415 | Msa1417840:intron |
| CTGTTTCCATTATAAACTCT+TGG | 0.436093 | tig0024530:-32254 | Msa1417840:CDS |
| TCTATGTTGGGATGCGGTAC+TGG | 0.440002 | tig0024530:-32729 | Msa1417840:CDS |
| ATCCATATCTTCAGAGGTGC+TGG | 0.440328 | tig0024530:+31223 | None:intergenic |
| CTCTCTTCAAATATCTATGT+TGG | 0.442020 | tig0024530:-32742 | Msa1417840:CDS |
| CAAGAATTGGGCACGTGTCC+CGG | 0.442821 | tig0024530:-31333 | Msa1417840:CDS |
| GTCAGTTATGTTGAGAATGC+TGG | 0.450633 | tig0024530:-31878 | Msa1417840:CDS |
| ACTTGCACTTAAGAGGGCTT+TGG | 0.451923 | tig0024530:-32776 | Msa1417840:CDS |
| GAGTGCGTTCATAACTGAAA+TGG | 0.452304 | tig0024530:+35035 | None:intergenic |
| TCTCACCCCTTCCTTCATCA+TGG | 0.453039 | tig0024530:-31303 | Msa1417840:CDS |
| CAACACACCAACTTTATCTT+GGG | 0.457672 | tig0024530:+34471 | None:intergenic |
| AAGAAATTGACATGGAGTAC+AGG | 0.459008 | tig0024530:-31379 | Msa1417840:CDS |
| TATGGTTTCAACCACTGTAC+AGG | 0.463537 | tig0024530:+31587 | None:intergenic |
| TCTCTTCAAATATCTATGTT+GGG | 0.463786 | tig0024530:-32741 | Msa1417840:CDS |
| TGAATTGCTTCTTCAGTGAA+TGG | 0.469168 | tig0024530:+32703 | None:intergenic |
| GGGAAGATGCTTATTTGTCT+AGG | 0.470752 | tig0024530:-32281 | Msa1417840:CDS |
| AAGGGGTGAGACCAAGAGCC+GGG | 0.475278 | tig0024530:+31315 | None:intergenic |
| GCATTTATTGCTGCTGCTGA+TGG | 0.484929 | tig0024530:+31251 | None:intergenic |
| TATTGATATAGGATATCATT+CGG | 0.487615 | tig0024530:-33294 | Msa1417840:intron |
| ATTCTTGTATTGGTCGAGCC+AGG | 0.487791 | tig0024530:+34586 | None:intergenic |
| AGAGTTGGTCGGCGTGGGTG+AGG | 0.491302 | tig0024530:+35079 | None:intergenic |
| TATCTTCAGAGGTGCTGGTA+GGG | 0.493651 | tig0024530:+31228 | None:intergenic |
| GGATCCATACCGAGATCAAA+TGG | 0.499443 | tig0024530:-31855 | Msa1417840:CDS |
| CTGCGGCGATGAAGGGATTG+AGG | 0.499797 | tig0024530:+34982 | None:intergenic |
| CTCAAGCTCAAATCAGAAGA+TGG | 0.505920 | tig0024530:+31725 | None:intergenic |
| TTGTAACAAGTCTACATCTC+AGG | 0.507679 | tig0024530:-34626 | Msa1417840:CDS |
| GAAGGGGTGAGACCAAGAGC+CGG | 0.510828 | tig0024530:+31314 | None:intergenic |
| CTTTCTGGCCAAGCTCAACT+AGG | 0.513801 | tig0024530:+31552 | None:intergenic |
| GAAGCATATGCTTCTATTGG+AGG | 0.515453 | tig0024530:-33196 | Msa1417840:CDS |
| TCCTCCATTTGATCTCGGTA+TGG | 0.518447 | tig0024530:+31851 | None:intergenic |
| TTGGTCGGCGTGGGTGAGGA+AGG | 0.519954 | tig0024530:+35083 | None:intergenic |
| GGAGAAACCGAAACAATCTT+GGG | 0.521215 | tig0024530:+33269 | None:intergenic |
| TACCCGTGTTACTTGCTACT+CGG | 0.521616 | tig0024530:-34650 | Msa1417840:CDS |
| CAAAACTGATATCTACGCTC+CGG | 0.521810 | tig0024530:-33234 | Msa1417840:CDS |
| ATCTTCAGAGGTGCTGGTAG+GGG | 0.525267 | tig0024530:+31229 | None:intergenic |
| AGGGATTGAGGGTATCGGTT+GGG | 0.525449 | tig0024530:+34994 | None:intergenic |
| CGTATGTATTATATCTGTAA+AGG | 0.526845 | tig0024530:+31006 | None:intergenic |
| ATAGAAAACTGGGGATAAAG+AGG | 0.527953 | tig0024530:+32461 | None:intergenic |
| TTGGAAAGAGTTGGTCGGCG+TGG | 0.532518 | tig0024530:+35073 | None:intergenic |
| TCAGTTATGTTGAGAATGCT+GGG | 0.533403 | tig0024530:-31877 | Msa1417840:CDS |
| TAAGAGGGCTTTGGAAGCAA+AGG | 0.534948 | tig0024530:-32767 | Msa1417840:CDS |
| TGAAAATCTGCGGCGATGAA+GGG | 0.539351 | tig0024530:+34975 | None:intergenic |
| GTCTTTATCCATATCTTCAG+AGG | 0.540172 | tig0024530:+31217 | None:intergenic |
| GTTGTATAGATTAGTACAAG+TGG | 0.541939 | tig0024530:+30888 | None:intergenic |
| AAAACTGATATCTACGCTCC+GGG | 0.542299 | tig0024530:-33233 | Msa1417840:CDS |
| AAGAGGGCTTTGGAAGCAAA+GGG | 0.543258 | tig0024530:-32766 | Msa1417840:CDS |
| GGTGTGTTGCTTCTCAACCT+AGG | 0.543801 | tig0024530:-34457 | Msa1417840:CDS |
| TCTGTAAAGGAGTAAAACCC+AGG | 0.545654 | tig0024530:+31019 | None:intergenic |
| AGTAAGCTGCTCATTATAAG+TGG | 0.545992 | tig0024530:+34516 | None:intergenic |
| TCGGCGTGGGTGAGGAAGGA+AGG | 0.546098 | tig0024530:+35087 | None:intergenic |
| CTAGTTGAGCTTGGCCAGAA+AGG | 0.546122 | tig0024530:-31551 | Msa1417840:CDS |
| TGCGGCGATGAAGGGATTGA+GGG | 0.547203 | tig0024530:+34983 | None:intergenic |
| GAATTGCTTCTTCAGTGAAT+GGG | 0.548173 | tig0024530:+32704 | None:intergenic |
| GCAAGATCCATGATGAAGGA+AGG | 0.554278 | tig0024530:+31296 | None:intergenic |
| TGGAAAGAGTTGGTCGGCGT+GGG | 0.554554 | tig0024530:+35074 | None:intergenic |
| AACTCTTGGTATCAAAGAGA+AGG | 0.555055 | tig0024530:-32240 | Msa1417840:CDS |
| TGCACTCCTCCATTTGATCT+CGG | 0.555763 | tig0024530:+31846 | None:intergenic |
| AGTAGTGGATATAGAAAACT+GGG | 0.558376 | tig0024530:+32451 | None:intergenic |
| GTGTGATAGATTAAGAAGGA+TGG | 0.561861 | tig0024530:-32506 | Msa1417840:intron |
| ATCTGCAAGATCCATGATGA+AGG | 0.564670 | tig0024530:+31292 | None:intergenic |
| TTATCTTGGGCAGCGTGAGT+AGG | 0.565197 | tig0024530:+34484 | None:intergenic |
| CAAGATCCATGATGAAGGAA+GGG | 0.567383 | tig0024530:+31297 | None:intergenic |
| AAGGGATTGAGGGTATCGGT+TGG | 0.567491 | tig0024530:+34993 | None:intergenic |
| GATGAAGTCCTAGTTGAGCT+TGG | 0.570100 | tig0024530:-31560 | Msa1417840:CDS |
| CAAATATCTATGTTGGGATG+CGG | 0.570330 | tig0024530:-32735 | Msa1417840:CDS |
| CTTCCTTGGATTTAGGAGCC+CGG | 0.570429 | tig0024530:+33215 | None:intergenic |
| GCAGGCACTTGCACTTAAGA+GGG | 0.572079 | tig0024530:-32782 | Msa1417840:intron |
| GCGAAAAGATTAAAGAGGAA+AGG | 0.572094 | tig0024530:+34406 | None:intergenic |
| GCATATGCTTCTATTGGAGG+TGG | 0.572738 | tig0024530:-33193 | Msa1417840:CDS |
| CCTAGGTGGACCAGAGACGC+TGG | 0.572902 | tig0024530:-34440 | Msa1417840:CDS |
| CTAATGATAGTGTACCTCAC+TGG | 0.572939 | tig0024530:+31506 | None:intergenic |
| CCAGCGTCTCTGGTCCACCT+AGG | 0.573383 | tig0024530:+34440 | None:intergenic |
| CACGCTGCCCAAGATAAAGT+TGG | 0.577159 | tig0024530:-34478 | Msa1417840:CDS |
| AGAAATTGACATGGAGTACA+GGG | 0.578767 | tig0024530:-31378 | Msa1417840:CDS |
| CATCATGGATCTTGCAGATG+CGG | 0.579000 | tig0024530:-31288 | Msa1417840:CDS |
| GTGCATCTTCTTGATCATGC+AGG | 0.580701 | tig0024530:-31828 | Msa1417840:CDS |
| ATATCTTCAGAGGTGCTGGT+AGG | 0.580852 | tig0024530:+31227 | None:intergenic |
| AAGATCCATGATGAAGGAAG+GGG | 0.588954 | tig0024530:+31298 | None:intergenic |
| GCATTCTCAACATAACTGAC+AGG | 0.591932 | tig0024530:+31881 | None:intergenic |
| TCTTGTGTGATAGATTAAGA+AGG | 0.597670 | tig0024530:-32510 | Msa1417840:intron |
| ATGCAGGAATTGAAAGCTAG+AGG | 0.599634 | tig0024530:-31812 | Msa1417840:CDS |
| CAACATAGATATTTGAAGAG+AGG | 0.602336 | tig0024530:+32743 | None:intergenic |
| GACTCTTGAAGAAATTGACA+TGG | 0.603916 | tig0024530:-31387 | Msa1417840:CDS |
| ACGACGACGTTGGAAAGAGT+TGG | 0.607940 | tig0024530:+35064 | None:intergenic |
| ACTGATGCTTGACCCAGTAG+TGG | 0.613715 | tig0024530:+32436 | None:intergenic |
| GTCGAGTGGGCCCTGTACAG+TGG | 0.613972 | tig0024530:-31598 | Msa1417840:CDS |
| GCTCCGGGCTCCTAAATCCA+AGG | 0.618946 | tig0024530:-33218 | Msa1417840:CDS |
| GAGGAAGGAAGGAATATGGT+TGG | 0.620321 | tig0024530:+35098 | None:intergenic |
| ACGCAAAATTACAGATGACC+AGG | 0.621225 | tig0024530:-33161 | Msa1417840:intron |
| ATGGATTGCCAGAGTCGAGT+GGG | 0.621399 | tig0024530:-31611 | Msa1417840:intron |
| ATGGTTTCAACCACTGTACA+GGG | 0.624392 | tig0024530:+31588 | None:intergenic |
| GATCTGCGAAAAGATTAAAG+AGG | 0.632933 | tig0024530:+34401 | None:intergenic |
| CATAACTGACAGGAACACCA+TGG | 0.639549 | tig0024530:+31891 | None:intergenic |
| GATGGATTGCCAGAGTCGAG+TGG | 0.639812 | tig0024530:-31612 | Msa1417840:intron |
| CTGTAAAGGAGTAAAACCCA+GGG | 0.640643 | tig0024530:+31020 | None:intergenic |
| GTTGGCGTGTACGTCAAAGA+TGG | 0.646233 | tig0024530:+35116 | None:intergenic |
| TCTTGGCGAAGTATTTAACT+GGG | 0.647791 | tig0024530:+31195 | None:intergenic |
| ATAACTGACAGGAACACCAT+GGG | 0.647820 | tig0024530:+31892 | None:intergenic |
| GATGAAGGGATTGAGGGTAT+CGG | 0.652118 | tig0024530:+34989 | None:intergenic |
| GTGTTGCTTCTCAACCTAGG+TGG | 0.663732 | tig0024530:-34454 | Msa1417840:CDS |
| TCTATGAAATCAAATTCAGG+TGG | 0.664584 | tig0024530:+31085 | None:intergenic |
| GGATGGAATAACAAGGCTCG+TGG | 0.666352 | tig0024530:-32489 | Msa1417840:CDS |
| CGACGTTGGAAAGAGTTGGT+CGG | 0.676199 | tig0024530:+35068 | None:intergenic |
| ATCCGAGTAGCAAGTAACAC+GGG | 0.692447 | tig0024530:+34648 | None:intergenic |
| ATGCTTACATTGAAAATCTG+CGG | 0.701447 | tig0024530:+34965 | None:intergenic |
| AATCCGAGTAGCAAGTAACA+CGG | 0.705787 | tig0024530:+34647 | None:intergenic |
| TTAAGAAGGATGGAATAACA+AGG | 0.706239 | tig0024530:-32496 | Msa1417840:CDS |
| CAGTTATGTTGAGAATGCTG+GGG | 0.717752 | tig0024530:-31876 | Msa1417840:CDS |
| TCCATACCGAGATCAAATGG+AGG | 0.721527 | tig0024530:-31852 | Msa1417840:CDS |
| GTAGTGGATATAGAAAACTG+GGG | 0.817706 | tig0024530:+32452 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | + | tig0024530:32155-32174 | None:intergenic | 0.0% |
| !!! | ATATTTTACATATATTAGAA+TGG | + | tig0024530:31330-31349 | None:intergenic | 10.0% |
| !! | TCTAATATATGTAAAATATT+TGG | - | tig0024530:31331-31350 | Msa1417840:CDS | 10.0% |
| !!! | ATTTATTGTATTTTATTGAT+TGG | - | tig0024530:32579-32598 | Msa1417840:intron | 10.0% |
| !!! | CTGATAATTATTTTTAAAAA+TGG | + | tig0024530:33053-33072 | None:intergenic | 10.0% |
| !!! | TTTATTTTATAGAAAATAAC+AGG | + | tig0024530:33178-33197 | None:intergenic | 10.0% |
| !! | AAAAATAGAAAGAAAAAAAT+TGG | + | tig0024530:34114-34133 | None:intergenic | 10.0% |
| !! | AGAAAAGTAAAAATGAAATA+GGG | + | tig0024530:31168-31187 | None:intergenic | 15.0% |
| !! | AAGAAAAGTAAAAATGAAAT+AGG | + | tig0024530:31169-31188 | None:intergenic | 15.0% |
| !! | TTGAAAATTGTTAAAAATTC+TGG | - | tig0024530:32340-32359 | Msa1417840:intron | 15.0% |
| !! | ACATTTGATATAAAATGTAT+AGG | + | tig0024530:33381-33400 | None:intergenic | 15.0% |
| !! | GTATCAATAACTTAAATAAA+TGG | + | tig0024530:33439-33458 | None:intergenic | 15.0% |
| !!! | TTTATTTAAGTTATTGATAC+AGG | - | tig0024530:33439-33458 | Msa1417840:intron | 15.0% |
| !!! | ACTGATATTATTTAATTTTC+AGG | - | tig0024530:33746-33765 | Msa1417840:intron | 15.0% |
| !!! | CTGATATTATTTAATTTTCA+GGG | - | tig0024530:33747-33766 | Msa1417840:intron | 15.0% |
| !!! | TTTTTTTCTTTCTATTTTTC+AGG | - | tig0024530:34115-34134 | Msa1417840:intron | 15.0% |
| !!! | TGGTATTGACTTTTTTATTT+TGG | - | tig0024530:30900-30919 | Msa1417840:three_prime_UTR | 20.0% |
| !!! | TCATTTTTATGCTAATTGTT+TGG | - | tig0024530:31724-31743 | Msa1417840:CDS | 20.0% |
| !!! | TGTTTACTTAAATTGTTTTC+CGG | + | tig0024530:31960-31979 | None:intergenic | 20.0% |
| !!! | ATATTGTATAATGGAATACA+TGG | - | tig0024530:32416-32435 | Msa1417840:CDS | 20.0% |
| !! | TATTGATATAGGATATCATT+CGG | - | tig0024530:32754-32773 | Msa1417840:CDS | 20.0% |
| !!! | AATGGAAATAACATCTTTTA+TGG | - | tig0024530:33229-33248 | Msa1417840:CDS | 20.0% |
| !!! | ATGGAAATAACATCTTTTAT+GGG | - | tig0024530:33230-33249 | Msa1417840:CDS | 20.0% |
| !! | TAACAATAAACCCAAATTTA+AGG | + | tig0024530:33510-33529 | None:intergenic | 20.0% |
| ! | AGTAAAAATGAAATAGGGTT+TGG | + | tig0024530:31163-31182 | None:intergenic | 25.0% |
| ! | TGAGATTTATTGAGAGAATT+TGG | + | tig0024530:31196-31215 | None:intergenic | 25.0% |
| ! | AATTCTCTCAATAAATCTCA+TGG | - | tig0024530:31196-31215 | Msa1417840:CDS | 25.0% |
| ! | TGCAAAAAAAAGTAACATAC+AGG | + | tig0024530:31672-31691 | None:intergenic | 25.0% |
| !! | GTTTACTTAAATTGTTTTCC+GGG | + | tig0024530:31959-31978 | None:intergenic | 25.0% |
| !! | TAAATGTCAATCATGAGTTT+TGG | - | tig0024530:32017-32036 | Msa1417840:intron | 25.0% |
| ! | TGAATTATTCAATTCCAAAG+TGG | - | tig0024530:32284-32303 | Msa1417840:intron | 25.0% |
| !! | AATTTTCAATGAAGATTCCA+AGG | + | tig0024530:32329-32348 | None:intergenic | 25.0% |
| ! | ATTATACAATATTCTAGTGC+AGG | + | tig0024530:32408-32427 | None:intergenic | 25.0% |
| ! | TGCACTAGAATATTGTATAA+TGG | - | tig0024530:32407-32426 | Msa1417840:intron | 25.0% |
| !!! | TTGTATTTTATTGATTGGTG+TGG | - | tig0024530:32584-32603 | Msa1417840:intron | 25.0% |
| !!! | TGTATTTTATTGATTGGTGT+GGG | - | tig0024530:32585-32604 | Msa1417840:intron | 25.0% |
| ! | TCTGTTTATGTTTGATGTAA+TGG | - | tig0024530:32608-32627 | Msa1417840:intron | 25.0% |
| !! | TATGTCTCTTGTATTGATAT+AGG | - | tig0024530:32743-32762 | Msa1417840:CDS | 25.0% |
| ! | GGGGAAAATAAAAATAAGAA+AGG | + | tig0024530:32938-32957 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATGTATGT+CGG | + | tig0024530:33024-33043 | None:intergenic | 25.0% |
| ! | TCTCTTCAAATATCTATGTT+GGG | - | tig0024530:33307-33326 | Msa1417840:intron | 25.0% |
| !! | CATTTTGTCACCTTAAATTT+GGG | - | tig0024530:33497-33516 | Msa1417840:intron | 25.0% |
| ! | AAATTCTCTAAATCATGCAA+GGG | + | tig0024530:33685-33704 | None:intergenic | 25.0% |
| ! | AAAATTCTCTAAATCATGCA+AGG | + | tig0024530:33686-33705 | None:intergenic | 25.0% |
| ! | TTGATACCAAGAGTTTATAA+TGG | + | tig0024530:33803-33822 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAAGGTTATATT+AGG | - | tig0024530:33818-33837 | Msa1417840:intron | 25.0% |
| ! | AGGTTCAGAAAAAAAATCAT+AGG | + | tig0024530:34025-34044 | None:intergenic | 25.0% |
| ! | TTTGTATTCTTGCTTTCTTT+GGG | - | tig0024530:34381-34400 | Msa1417840:intron | 25.0% |
| ! | CAATAAAAATGTCAGATACA+GGG | + | tig0024530:34416-34435 | None:intergenic | 25.0% |
| !! | TATCTGACATTTTTATTGGA+TGG | - | tig0024530:34418-34437 | Msa1417840:CDS | 25.0% |
| ! | AATTGAACCAAAAAACATCT+TGG | + | tig0024530:34873-34892 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTGGTTCAATTT+TGG | - | tig0024530:34874-34893 | Msa1417840:intron | 25.0% |
| ! | ACATCTATGAAATCAAATTC+AGG | + | tig0024530:34969-34988 | None:intergenic | 25.0% |
| !!! | TATACTTCATTTTTTTCCCT+GGG | - | tig0024530:35012-35031 | Msa1417840:CDS | 25.0% |
| ! | CGTATGTATTATATCTGTAA+AGG | + | tig0024530:35045-35064 | None:intergenic | 25.0% |
| ! | TAAAAACTTGAATGTTAGCT+TGG | - | tig0024530:35103-35122 | Msa1417840:five_prime_UTR | 25.0% |
| ATGCTTACATTGAAAATCTG+CGG | + | tig0024530:31086-31105 | None:intergenic | 30.0% | |
| TAGGGTTTGGAAATAATTGA+AGG | + | tig0024530:31150-31169 | None:intergenic | 30.0% | |
| GAATGGTCAATTGAAAAGAA+GGG | + | tig0024530:31313-31332 | None:intergenic | 30.0% | |
| AGAATGGTCAATTGAAAAGA+AGG | + | tig0024530:31314-31333 | None:intergenic | 30.0% | |
| !!! | ATATTTGGTTTGTGCTTTTC+AGG | - | tig0024530:31346-31365 | Msa1417840:CDS | 30.0% |
| TTTATGCTAATTGTTTGGAG+CGG | - | tig0024530:31729-31748 | Msa1417840:CDS | 30.0% | |
| GTGATCAAATCTCAATAGAT+AGG | + | tig0024530:31805-31824 | None:intergenic | 30.0% | |
| GGACTTAATGACTCTAATAT+TGG | - | tig0024530:31926-31945 | Msa1417840:intron | 30.0% | |
| ATGTTATACAGGAAGGAATA+AGG | - | tig0024530:32237-32256 | Msa1417840:CDS | 30.0% | |
| TGTTATACAGGAAGGAATAA+GGG | - | tig0024530:32238-32257 | Msa1417840:CDS | 30.0% | |
| GTCATGTGATTTCAATTTCT+TGG | - | tig0024530:32472-32491 | Msa1417840:CDS | 30.0% | |
| ATGTGATTTCAATTTCTTGG+TGG | - | tig0024530:32475-32494 | Msa1417840:CDS | 30.0% | |
| TGTGATTTCAATTTCTTGGT+GGG | - | tig0024530:32476-32495 | Msa1417840:CDS | 30.0% | |
| AACTGTTGTATATTGATCAC+TGG | - | tig0024530:32635-32654 | Msa1417840:intron | 30.0% | |
| ACTGTTGTATATTGATCACT+GGG | - | tig0024530:32636-32655 | Msa1417840:intron | 30.0% | |
| ! | GTAGATATCAGTTTTGCTAA+TGG | + | tig0024530:32810-32829 | None:intergenic | 30.0% |
| ! | TCATCTGTAATTTTGCGTAA+AGG | + | tig0024530:32885-32904 | None:intergenic | 30.0% |
| ! | TTTTCCCCTTATATGTTGTT+TGG | - | tig0024530:32950-32969 | Msa1417840:intron | 30.0% |
| ATAGCCAAACAACATATAAG+GGG | + | tig0024530:32957-32976 | None:intergenic | 30.0% | |
| CATAGCCAAACAACATATAA+GGG | + | tig0024530:32958-32977 | None:intergenic | 30.0% | |
| ACATAGCCAAACAACATATA+AGG | + | tig0024530:32959-32978 | None:intergenic | 30.0% | |
| AACAGTGTTACAGTTTAGAA+TGG | - | tig0024530:33211-33230 | Msa1417840:CDS | 30.0% | |
| CAACATAGATATTTGAAGAG+AGG | + | tig0024530:33308-33327 | None:intergenic | 30.0% | |
| CTCTCTTCAAATATCTATGT+TGG | - | tig0024530:33306-33325 | Msa1417840:intron | 30.0% | |
| ! | CCAAATTTAAGGTGACAAAA+TGG | + | tig0024530:33499-33518 | None:intergenic | 30.0% |
| ! | CCATTTTGTCACCTTAAATT+TGG | - | tig0024530:33496-33515 | Msa1417840:intron | 30.0% |
| TCTTGTGTGATAGATTAAGA+AGG | - | tig0024530:33538-33557 | Msa1417840:intron | 30.0% | |
| TTAAGAAGGATGGAATAACA+AGG | - | tig0024530:33552-33571 | Msa1417840:intron | 30.0% | |
| !! | AGTAGTGGATATAGAAAACT+GGG | + | tig0024530:33600-33619 | None:intergenic | 30.0% |
| ! | AGTTTTCTATATCCACTACT+GGG | - | tig0024530:33600-33619 | Msa1417840:intron | 30.0% |
| ! | CAAGAGTTTATAATGGAAAC+AGG | + | tig0024530:33796-33815 | None:intergenic | 30.0% |
| CTGTTTCCATTATAAACTCT+TGG | - | tig0024530:33794-33813 | Msa1417840:intron | 30.0% | |
| AGAAGGTTATATTAGGTCAA+TGG | - | tig0024530:33825-33844 | Msa1417840:intron | 30.0% | |
| AATACGCTTTCCTTAAAACT+CGG | - | tig0024530:33916-33935 | Msa1417840:intron | 30.0% | |
| !!! | TTTTTTCTGAACCTGTTAGT+AGG | - | tig0024530:34031-34050 | Msa1417840:intron | 30.0% |
| ! | TTTTTCTGAACCTGTTAGTA+GGG | - | tig0024530:34032-34051 | Msa1417840:intron | 30.0% |
| AGAAAAAAATTGGTATGCCA+CGG | + | tig0024530:34104-34123 | None:intergenic | 30.0% | |
| !!! | ATGATATTTTTTAGTGCCCA+TGG | - | tig0024530:34140-34159 | Msa1417840:intron | 30.0% |
| TGTACTGTTCAATTAATAGC+TGG | - | tig0024530:34358-34377 | Msa1417840:intron | 30.0% | |
| GTTTGTATTCTTGCTTTCTT+TGG | - | tig0024530:34380-34399 | Msa1417840:intron | 30.0% | |
| CCAATAAAAATGTCAGATAC+AGG | + | tig0024530:34417-34436 | None:intergenic | 30.0% | |
| ! | CCTGTATCTGACATTTTTAT+TGG | - | tig0024530:34414-34433 | Msa1417840:CDS | 30.0% |
| CAATAAGCTATCGTAGTAAA+AGG | + | tig0024530:34568-34587 | None:intergenic | 30.0% | |
| ! | CTTTTACTACGATAGCTTAT+TGG | - | tig0024530:34566-34585 | Msa1417840:CDS | 30.0% |
| TCTATGAAATCAAATTCAGG+TGG | + | tig0024530:34966-34985 | None:intergenic | 30.0% | |
| !!! | GTATACTTCATTTTTTTCCC+TGG | - | tig0024530:35011-35030 | Msa1417840:CDS | 30.0% |
| GTTGTATAGATTAGTACAAG+TGG | + | tig0024530:35163-35182 | None:intergenic | 30.0% | |
| GAACATATTCGTTCGTGATT+TGG | - | tig0024530:30880-30899 | Msa1417840:three_prime_UTR | 35.0% | |
| TTGTAACAAGTCTACATCTC+AGG | - | tig0024530:31422-31441 | Msa1417840:intron | 35.0% | |
| AGTAAGCTGCTCATTATAAG+TGG | + | tig0024530:31535-31554 | None:intergenic | 35.0% | |
| CAACACACCAACTTTATCTT+GGG | + | tig0024530:31580-31599 | None:intergenic | 35.0% | |
| GCGAAAAGATTAAAGAGGAA+AGG | + | tig0024530:31645-31664 | None:intergenic | 35.0% | |
| GATCTGCGAAAAGATTAAAG+AGG | + | tig0024530:31650-31669 | None:intergenic | 35.0% | |
| TAGATAGGCTCCTACTAATT+AGG | + | tig0024530:31790-31809 | None:intergenic | 35.0% | |
| !! | CATCTGGATTCTTAGTTTGT+TGG | - | tig0024530:31847-31866 | Msa1417840:CDS | 35.0% |
| !! | TCTAATATTGGCTTAGATCC+CGG | - | tig0024530:31938-31957 | Msa1417840:intron | 35.0% |
| !! | TGTCAATCATGAGTTTTGGT+AGG | - | tig0024530:32021-32040 | Msa1417840:intron | 35.0% |
| TAAGAATTGCTTCTCATGTG+AGG | - | tig0024530:32079-32098 | Msa1417840:intron | 35.0% | |
| GTTATACAGGAAGGAATAAG+GGG | - | tig0024530:32239-32258 | Msa1417840:CDS | 35.0% | |
| TTATACAGGAAGGAATAAGG+GGG | - | tig0024530:32240-32259 | Msa1417840:CDS | 35.0% | |
| GAAATGCTAGAGATATGTCT+TGG | - | tig0024530:32362-32381 | Msa1417840:intron | 35.0% | |
| ! | AATAGAAGCATATGCTTCCT+TGG | + | tig0024530:32850-32869 | None:intergenic | 35.0% |
| ! | AAGGAAGCATATGCTTCTAT+TGG | - | tig0024530:32849-32868 | Msa1417840:intron | 35.0% |
| CAAAAAAATTGAACTGCACC+TGG | + | tig0024530:32908-32927 | None:intergenic | 35.0% | |
| TTACGTGTTAGTGTCATATC+TGG | - | tig0024530:33076-33095 | Msa1417840:intron | 35.0% | |
| CTCTTCAAGAGAATACTTTG+TGG | - | tig0024530:33145-33164 | Msa1417840:intron | 35.0% | |
| CAAATATCTATGTTGGGATG+CGG | - | tig0024530:33313-33332 | Msa1417840:intron | 35.0% | |
| GAATTGCTTCTTCAGTGAAT+GGG | + | tig0024530:33347-33366 | None:intergenic | 35.0% | |
| TGAATTGCTTCTTCAGTGAA+TGG | + | tig0024530:33348-33367 | None:intergenic | 35.0% | |
| GTGTGATAGATTAAGAAGGA+TGG | - | tig0024530:33542-33561 | Msa1417840:intron | 35.0% | |
| ATAGAAAACTGGGGATAAAG+AGG | + | tig0024530:33590-33609 | None:intergenic | 35.0% | |
| !! | GTAGTGGATATAGAAAACTG+GGG | + | tig0024530:33599-33618 | None:intergenic | 35.0% |
| !! | CAGTAGTGGATATAGAAAAC+TGG | + | tig0024530:33601-33620 | None:intergenic | 35.0% |
| ! | CAGTTTTCTATATCCACTAC+TGG | - | tig0024530:33599-33618 | Msa1417840:intron | 35.0% |
| AACTCTTGGTATCAAAGAGA+AGG | - | tig0024530:33808-33827 | Msa1417840:intron | 35.0% | |
| TTTCCTTAAAACTCGGTATC+CGG | - | tig0024530:33923-33942 | Msa1417840:intron | 35.0% | |
| ATTCAATACAAGTGGATGGT+GGG | + | tig0024530:33980-33999 | None:intergenic | 35.0% | |
| TATTCAATACAAGTGGATGG+TGG | + | tig0024530:33981-34000 | None:intergenic | 35.0% | |
| ACGTATTCAATACAAGTGGA+TGG | + | tig0024530:33984-34003 | None:intergenic | 35.0% | |
| TCCACTTGTATTGAATACGT+TGG | - | tig0024530:33984-34003 | Msa1417840:intron | 35.0% | |
| TCCAACGTATTCAATACAAG+TGG | + | tig0024530:33988-34007 | None:intergenic | 35.0% | |
| TGTATTGAATACGTTGGACA+TGG | - | tig0024530:33990-34009 | Msa1417840:intron | 35.0% | |
| ! | ATTTTGTAAGCCCTACTAAC+AGG | + | tig0024530:34045-34064 | None:intergenic | 35.0% |
| GTAGGGCTTACAAAATTCAA+AGG | - | tig0024530:34049-34068 | Msa1417840:intron | 35.0% | |
| TCAGTTATGTTGAGAATGCT+GGG | - | tig0024530:34171-34190 | Msa1417840:intron | 35.0% | |
| ACTAGGACTTCATCTGTATA+TGG | + | tig0024530:34482-34501 | None:intergenic | 35.0% | |
| GACTCTTGAAGAAATTGACA+TGG | - | tig0024530:34661-34680 | Msa1417840:CDS | 35.0% | |
| AAGAAATTGACATGGAGTAC+AGG | - | tig0024530:34669-34688 | Msa1417840:CDS | 35.0% | |
| AGAAATTGACATGGAGTACA+GGG | - | tig0024530:34670-34689 | Msa1417840:CDS | 35.0% | |
| TTGAATCTGGCATCAAGAAT+TGG | - | tig0024530:34702-34721 | Msa1417840:intron | 35.0% | |
| TGAATCTGGCATCAAGAATT+GGG | - | tig0024530:34703-34722 | Msa1417840:intron | 35.0% | |
| GTCTTTATCCATATCTTCAG+AGG | + | tig0024530:34834-34853 | None:intergenic | 35.0% | |
| ! | TCTTGGCGAAGTATTTAACT+GGG | + | tig0024530:34856-34875 | None:intergenic | 35.0% |
| ! | ATCTTGGCGAAGTATTTAAC+TGG | + | tig0024530:34857-34876 | None:intergenic | 35.0% |
| !!! | TACTTCGCCAAGATGTTTTT+TGG | - | tig0024530:34863-34882 | Msa1417840:intron | 35.0% |
| ! | CTGAACGCAGTTATCATTTT+GGG | + | tig0024530:34920-34939 | None:intergenic | 35.0% |
| GTACAAGTGGTAAACTGTTT+GGG | + | tig0024530:35150-35169 | None:intergenic | 35.0% | |
| AGTACAAGTGGTAAACTGTT+TGG | + | tig0024530:35151-35170 | None:intergenic | 35.0% | |
| GAGTGCGTTCATAACTGAAA+TGG | + | tig0024530:31016-31035 | None:intergenic | 40.0% | |
| AATCCGAGTAGCAAGTAACA+CGG | + | tig0024530:31404-31423 | None:intergenic | 40.0% | |
| ! | TCTGGTGCCAATTCTTGTAT+TGG | + | tig0024530:31475-31494 | None:intergenic | 40.0% |
| TGAGCGAGAAACTAAGTTTC+TGG | + | tig0024530:31493-31512 | None:intergenic | 40.0% | |
| GCAACACACCAACTTTATCT+TGG | + | tig0024530:31581-31600 | None:intergenic | 40.0% | |
| AGGCTCCTACTAATTAGGAA+GGG | + | tig0024530:31785-31804 | None:intergenic | 40.0% | |
| TAGGCTCCTACTAATTAGGA+AGG | + | tig0024530:31786-31805 | None:intergenic | 40.0% | |
| TTGAGATTTGATCACTCAGC+TGG | - | tig0024530:31810-31829 | Msa1417840:CDS | 40.0% | |
| TGTGCCTAGATTCCTAATTG+AGG | - | tig0024530:31879-31898 | Msa1417840:CDS | 40.0% | |
| TGAGCCTCAATTAGGAATCT+AGG | + | tig0024530:31886-31905 | None:intergenic | 40.0% | |
| AGATTGTGTGAGCCTCAATT+AGG | + | tig0024530:31894-31913 | None:intergenic | 40.0% | |
| ACACAATCTTGTGTTTGTGC+TGG | - | tig0024530:31905-31924 | Msa1417840:intron | 40.0% | |
| !! | ACAAGAGTGCTGCCATAATT+TGG | - | tig0024530:31977-31996 | Msa1417840:intron | 40.0% |
| CTGCCATAATTTGGTAGGAT+GGG | - | tig0024530:31986-32005 | Msa1417840:intron | 40.0% | |
| AATTGCTTCTCATGTGAGGA+TGG | - | tig0024530:32083-32102 | Msa1417840:intron | 40.0% | |
| ATTGCTTCTCATGTGAGGAT+GGG | - | tig0024530:32084-32103 | Msa1417840:intron | 40.0% | |
| !! | AACTAGTTCTGCAAGATGCT+TGG | - | tig0024530:32112-32131 | Msa1417840:intron | 40.0% |
| !! | ACTAGTTCTGCAAGATGCTT+GGG | - | tig0024530:32113-32132 | Msa1417840:intron | 40.0% |
| GTGTGTGTGTGATGTTATAC+AGG | - | tig0024530:32226-32245 | Msa1417840:intron | 40.0% | |
| GTGTGTGATGTTATACAGGA+AGG | - | tig0024530:32230-32249 | Msa1417840:intron | 40.0% | |
| TATACAGGAAGGAATAAGGG+GGG | - | tig0024530:32241-32260 | Msa1417840:CDS | 40.0% | |
| ! | GGGTTTGCTTGCTTTATATG+TGG | - | tig0024530:32261-32280 | Msa1417840:CDS | 40.0% |
| TAGTGTGTTCTACACCACTT+TGG | + | tig0024530:32301-32320 | None:intergenic | 40.0% | |
| AAAGTGGTGTAGAACACACT+AGG | - | tig0024530:32300-32319 | Msa1417840:intron | 40.0% | |
| AGGCAGAATAGCAACAAACT+TGG | + | tig0024530:32388-32407 | None:intergenic | 40.0% | |
| ATGGAATACATGGTTGTGCT+AGG | - | tig0024530:32426-32445 | Msa1417840:CDS | 40.0% | |
| ! | GTGGGTGCTGCAAATTATTT+GGG | - | tig0024530:32494-32513 | Msa1417840:CDS | 40.0% |
| !!! | TTGTGACGTTTTGGAGAGAT+TGG | - | tig0024530:32549-32568 | Msa1417840:intron | 40.0% |
| !!! | TGTGACGTTTTGGAGAGATT+GGG | - | tig0024530:32550-32569 | Msa1417840:intron | 40.0% |
| GGAGAAACCGAAACAATCTT+GGG | + | tig0024530:32782-32801 | None:intergenic | 40.0% | |
| TGGAGAAACCGAAACAATCT+TGG | + | tig0024530:32783-32802 | None:intergenic | 40.0% | |
| ! | TCAGTTTTGCTAATGGTTGC+TGG | + | tig0024530:32803-32822 | None:intergenic | 40.0% |
| CAAAACTGATATCTACGCTC+CGG | - | tig0024530:32814-32833 | Msa1417840:intron | 40.0% | |
| AAAACTGATATCTACGCTCC+GGG | - | tig0024530:32815-32834 | Msa1417840:intron | 40.0% | |
| GCATATGCTTCCTTGGATTT+AGG | + | tig0024530:32843-32862 | None:intergenic | 40.0% | |
| GAAGCATATGCTTCTATTGG+AGG | - | tig0024530:32852-32871 | Msa1417840:intron | 40.0% | |
| ACGCAAAATTACAGATGACC+AGG | - | tig0024530:32887-32906 | Msa1417840:intron | 40.0% | |
| CTCTAGATTGAAGACATGTC+CGG | - | tig0024530:32989-33008 | Msa1417840:intron | 40.0% | |
| !! | TGTATGTCGGTGTCAAATAC+CGG | + | tig0024530:33011-33030 | None:intergenic | 40.0% |
| GTTAGTGTCATATCTGGTGT+AGG | - | tig0024530:33082-33101 | Msa1417840:intron | 40.0% | |
| AACGTTCAGGTACTATGTAG+TGG | - | tig0024530:33646-33665 | Msa1417840:intron | 40.0% | |
| !! | CATGCAAGGGTATTCATGAA+GGG | + | tig0024530:33672-33691 | None:intergenic | 40.0% |
| !! | TCATGCAAGGGTATTCATGA+AGG | + | tig0024530:33673-33692 | None:intergenic | 40.0% |
| GGGAAGATGCTTATTTGTCT+AGG | - | tig0024530:33767-33786 | Msa1417840:intron | 40.0% | |
| AGAATAAAACTCACCTCCCT+TGG | + | tig0024530:33889-33908 | None:intergenic | 40.0% | |
| ! | TTTTACTCCAATCTGAACCG+TGG | - | tig0024530:34084-34103 | Msa1417840:intron | 40.0% |
| ATAACTGACAGGAACACCAT+GGG | + | tig0024530:34159-34178 | None:intergenic | 40.0% | |
| GCATTCTCAACATAACTGAC+AGG | + | tig0024530:34170-34189 | None:intergenic | 40.0% | |
| GTCAGTTATGTTGAGAATGC+TGG | - | tig0024530:34170-34189 | Msa1417840:intron | 40.0% | |
| CAGTTATGTTGAGAATGCTG+GGG | - | tig0024530:34172-34191 | Msa1417840:intron | 40.0% | |
| ATGCAGGAATTGAAAGCTAG+AGG | - | tig0024530:34236-34255 | Msa1417840:intron | 40.0% | |
| CTCAAGCTCAAATCAGAAGA+TGG | + | tig0024530:34326-34345 | None:intergenic | 40.0% | |
| ATGGTTTCAACCACTGTACA+GGG | + | tig0024530:34463-34482 | None:intergenic | 40.0% | |
| TATGGTTTCAACCACTGTAC+AGG | + | tig0024530:34464-34483 | None:intergenic | 40.0% | |
| AAAGACTCTTCACACCTTTC+TGG | + | tig0024530:34514-34533 | None:intergenic | 40.0% | |
| ! | CTAATGATAGTGTACCTCAC+TGG | + | tig0024530:34545-34564 | None:intergenic | 40.0% |
| AAGATCCATGATGAAGGAAG+GGG | + | tig0024530:34753-34772 | None:intergenic | 40.0% | |
| CAAGATCCATGATGAAGGAA+GGG | + | tig0024530:34754-34773 | None:intergenic | 40.0% | |
| ATCTGCAAGATCCATGATGA+AGG | + | tig0024530:34759-34778 | None:intergenic | 40.0% | |
| ! | CCTGAACGCAGTTATCATTT+TGG | + | tig0024530:34921-34940 | None:intergenic | 40.0% |
| CCAAAATGATAACTGCGTTC+AGG | - | tig0024530:34918-34937 | Msa1417840:intron | 40.0% | |
| CTGTAAAGGAGTAAAACCCA+GGG | + | tig0024530:35031-35050 | None:intergenic | 40.0% | |
| TCTGTAAAGGAGTAAAACCC+AGG | + | tig0024530:35032-35051 | None:intergenic | 40.0% | |
| GAGGAAGGAAGGAATATGGT+TGG | + | tig0024530:30953-30972 | None:intergenic | 45.0% | |
| ! | GATGAAGGGATTGAGGGTAT+CGG | + | tig0024530:31062-31081 | None:intergenic | 45.0% |
| TGAAAATCTGCGGCGATGAA+GGG | + | tig0024530:31076-31095 | None:intergenic | 45.0% | |
| TTGAAAATCTGCGGCGATGA+AGG | + | tig0024530:31077-31096 | None:intergenic | 45.0% | |
| ! | GTTTGTTGAATTGCTGCTGC+TGG | + | tig0024530:31291-31310 | None:intergenic | 45.0% |
| !! | TACCCGTGTTACTTGCTACT+CGG | - | tig0024530:31398-31417 | Msa1417840:CDS | 45.0% |
| ATCCGAGTAGCAAGTAACAC+GGG | + | tig0024530:31403-31422 | None:intergenic | 45.0% | |
| !!! | GCATCCTTGTTTTTGTGTCC+TGG | - | tig0024530:31444-31463 | Msa1417840:intron | 45.0% |
| ! | ATTCTTGTATTGGTCGAGCC+AGG | + | tig0024530:31465-31484 | None:intergenic | 45.0% |
| GGCTCGACCAATACAAGAAT+TGG | - | tig0024530:31465-31484 | Msa1417840:intron | 45.0% | |
| ! | ATGCTAATTGTTTGGAGCGG+AGG | - | tig0024530:31732-31751 | Msa1417840:CDS | 45.0% |
| CTACTAATTAGGAAGGGGGT+AGG | + | tig0024530:31779-31798 | None:intergenic | 45.0% | |
| CTACCCCCTTCCTAATTAGT+AGG | - | tig0024530:31777-31796 | Msa1417840:CDS | 45.0% | |
| GCTCCTACTAATTAGGAAGG+GGG | + | tig0024530:31783-31802 | None:intergenic | 45.0% | |
| GGCTCCTACTAATTAGGAAG+GGG | + | tig0024530:31784-31803 | None:intergenic | 45.0% | |
| GGCTGATCTGATATTGCATC+TGG | - | tig0024530:31831-31850 | Msa1417840:CDS | 45.0% | |
| ! | GAGTGCTGCCATAATTTGGT+AGG | - | tig0024530:31981-32000 | Msa1417840:intron | 45.0% |
| GCTGCCATAATTTGGTAGGA+TGG | - | tig0024530:31985-32004 | Msa1417840:intron | 45.0% | |
| TCGCCCATCCTACCAAATTA+TGG | + | tig0024530:31992-32011 | None:intergenic | 45.0% | |
| ATAATTTGGTAGGATGGGCG+AGG | - | tig0024530:31991-32010 | Msa1417840:intron | 45.0% | |
| !! | TCATGAGTTTTGGTAGGTCG+TGG | - | tig0024530:32027-32046 | Msa1417840:intron | 45.0% |
| TAGAACACACTAGGATGCCT+TGG | - | tig0024530:32309-32328 | Msa1417840:intron | 45.0% | |
| ! | GGTGGGTGCTGCAAATTATT+TGG | - | tig0024530:32493-32512 | Msa1417840:CDS | 45.0% |
| ! | TGGGTTCTAACAGTAGAACC+TGG | - | tig0024530:32513-32532 | Msa1417840:intron | 45.0% |
| ! | GGGTTCTAACAGTAGAACCT+GGG | - | tig0024530:32514-32533 | Msa1417840:intron | 45.0% |
| ! | GGTTCTAACAGTAGAACCTG+GGG | - | tig0024530:32515-32534 | Msa1417840:intron | 45.0% |
| GTTCTAACAGTAGAACCTGG+GGG | - | tig0024530:32516-32535 | Msa1417840:intron | 45.0% | |
| ! | TGGGCATGTTTGTGACGTTT+TGG | - | tig0024530:32540-32559 | Msa1417840:intron | 45.0% |
| !!! | GTGACGTTTTGGAGAGATTG+GGG | - | tig0024530:32551-32570 | Msa1417840:intron | 45.0% |
| CCAAAGAGAAGATAGACCAC+TGG | + | tig0024530:32673-32692 | None:intergenic | 45.0% | |
| CCAGTGGTCTATCTTCTCTT+TGG | - | tig0024530:32670-32689 | Msa1417840:intron | 45.0% | |
| TTCGGCTCCCAAGATTGTTT+CGG | - | tig0024530:32772-32791 | Msa1417840:CDS | 45.0% | |
| GCATATGCTTCTATTGGAGG+TGG | - | tig0024530:32855-32874 | Msa1417840:intron | 45.0% | |
| GTTGTTTGGCTATGTAGCAC+TGG | - | tig0024530:32964-32983 | Msa1417840:intron | 45.0% | |
| ! | ATGGGTTCTGATGATCATGC+AGG | - | tig0024530:33248-33267 | Msa1417840:CDS | 45.0% |
| ACTTGCACTTAAGAGGGCTT+TGG | - | tig0024530:33272-33291 | Msa1417840:CDS | 45.0% | |
| !! | TAAGAGGGCTTTGGAAGCAA+AGG | - | tig0024530:33281-33300 | Msa1417840:CDS | 45.0% |
| !! | AAGAGGGCTTTGGAAGCAAA+GGG | - | tig0024530:33282-33301 | Msa1417840:CDS | 45.0% |
| ! | TCGAGAGTTTTTCTGAGCCA+AGG | - | tig0024530:33869-33888 | Msa1417840:intron | 45.0% |
| ! | CGAGAGTTTTTCTGAGCCAA+GGG | - | tig0024530:33870-33889 | Msa1417840:intron | 45.0% |
| ! | CCTCGGAATAATCGGTTCTT+GGG | + | tig0024530:33949-33968 | None:intergenic | 45.0% |
| CCAAGAACCGATTATTCCGA+GGG | - | tig0024530:33947-33966 | Msa1417840:intron | 45.0% | |
| CAAGAACCGATTATTCCGAG+GGG | - | tig0024530:33948-33967 | Msa1417840:intron | 45.0% | |
| ATTGGACCCCTCGGAATAAT+CGG | + | tig0024530:33957-33976 | None:intergenic | 45.0% | |
| !! | ATACAAGTGGATGGTGGGAT+TGG | + | tig0024530:33975-33994 | None:intergenic | 45.0% |
| CATAACTGACAGGAACACCA+TGG | + | tig0024530:34160-34179 | None:intergenic | 45.0% | |
| GGATCCATACCGAGATCAAA+TGG | - | tig0024530:34193-34212 | Msa1417840:intron | 45.0% | |
| TCCATACCGAGATCAAATGG+AGG | - | tig0024530:34196-34215 | Msa1417840:intron | 45.0% | |
| TCCTCCATTTGATCTCGGTA+TGG | + | tig0024530:34200-34219 | None:intergenic | 45.0% | |
| TGCACTCCTCCATTTGATCT+CGG | + | tig0024530:34205-34224 | None:intergenic | 45.0% | |
| GTGCATCTTCTTGATCATGC+AGG | - | tig0024530:34220-34239 | Msa1417840:intron | 45.0% | |
| GATGAAGTCCTAGTTGAGCT+TGG | - | tig0024530:34488-34507 | Msa1417840:CDS | 45.0% | |
| !! | GTCTTTTAGCTGTTCCAGTG+AGG | - | tig0024530:34528-34547 | Msa1417840:CDS | 45.0% |
| TGACATGGAGTACAGGGAAT+TGG | - | tig0024530:34676-34695 | Msa1417840:CDS | 45.0% | |
| ! | AGGGAATTGGCTCTTGAATC+TGG | - | tig0024530:34689-34708 | Msa1417840:intron | 45.0% |
| GCAAGATCCATGATGAAGGA+AGG | + | tig0024530:34755-34774 | None:intergenic | 45.0% | |
| CATCATGGATCTTGCAGATG+CGG | - | tig0024530:34760-34779 | Msa1417840:intron | 45.0% | |
| GCATTTATTGCTGCTGCTGA+TGG | + | tig0024530:34800-34819 | None:intergenic | 45.0% | |
| !! | TATCTTCAGAGGTGCTGGTA+GGG | + | tig0024530:34823-34842 | None:intergenic | 45.0% |
| !! | ATATCTTCAGAGGTGCTGGT+AGG | + | tig0024530:34824-34843 | None:intergenic | 45.0% |
| ! | TACCAGCACCTCTGAAGATA+TGG | - | tig0024530:34823-34842 | Msa1417840:intron | 45.0% |
| ! | ATCCATATCTTCAGAGGTGC+TGG | + | tig0024530:34828-34847 | None:intergenic | 45.0% |
| GTTGGCGTGTACGTCAAAGA+TGG | + | tig0024530:30935-30954 | None:intergenic | 50.0% | |
| GGGTGAGGAAGGAAGGAATA+TGG | + | tig0024530:30957-30976 | None:intergenic | 50.0% | |
| ! | CGACGTTGGAAAGAGTTGGT+CGG | + | tig0024530:30983-31002 | None:intergenic | 50.0% |
| ACGACGACGTTGGAAAGAGT+TGG | + | tig0024530:30987-31006 | None:intergenic | 50.0% | |
| !! | AGGGATTGAGGGTATCGGTT+GGG | + | tig0024530:31057-31076 | None:intergenic | 50.0% |
| !! | AAGGGATTGAGGGTATCGGT+TGG | + | tig0024530:31058-31077 | None:intergenic | 50.0% |
| CGAGCCAGGACACAAAAACA+AGG | + | tig0024530:31451-31470 | None:intergenic | 50.0% | |
| TTATCTTGGGCAGCGTGAGT+AGG | + | tig0024530:31567-31586 | None:intergenic | 50.0% | |
| CACGCTGCCCAAGATAAAGT+TGG | - | tig0024530:31570-31589 | Msa1417840:CDS | 50.0% | |
| !! | GGTGTGTTGCTTCTCAACCT+AGG | - | tig0024530:31591-31610 | Msa1417840:CDS | 50.0% |
| !! | GTGTTGCTTCTCAACCTAGG+TGG | - | tig0024530:31594-31613 | Msa1417840:CDS | 50.0% |
| !! | AGTTTTGGTAGGTCGTGGCA+AGG | - | tig0024530:32032-32051 | Msa1417840:intron | 50.0% |
| TAACAGTAGAACCTGGGGGT+TGG | - | tig0024530:32520-32539 | Msa1417840:intron | 50.0% | |
| AACAGTAGAACCTGGGGGTT+GGG | - | tig0024530:32521-32540 | Msa1417840:intron | 50.0% | |
| CTTCCTTGGATTTAGGAGCC+CGG | + | tig0024530:32836-32855 | None:intergenic | 50.0% | |
| TGCAGGCACTTGCACTTAAG+AGG | - | tig0024530:33265-33284 | Msa1417840:CDS | 50.0% | |
| GCAGGCACTTGCACTTAAGA+GGG | - | tig0024530:33266-33285 | Msa1417840:CDS | 50.0% | |
| TCTATGTTGGGATGCGGTAC+TGG | - | tig0024530:33319-33338 | Msa1417840:intron | 50.0% | |
| GGATGGAATAACAAGGCTCG+TGG | - | tig0024530:33559-33578 | Msa1417840:intron | 50.0% | |
| ACTGATGCTTGACCCAGTAG+TGG | + | tig0024530:33615-33634 | None:intergenic | 50.0% | |
| TGGGTCAAGCATCAGTGTTC+TGG | - | tig0024530:33619-33638 | Msa1417840:intron | 50.0% | |
| !! | GTGTTCTGGAGCAAACGTTC+AGG | - | tig0024530:33633-33652 | Msa1417840:intron | 50.0% |
| ! | GAGTTTTTCTGAGCCAAGGG+AGG | - | tig0024530:33873-33892 | Msa1417840:intron | 50.0% |
| ! | GGAATAATCGGTTCTTGGGC+CGG | + | tig0024530:33945-33964 | None:intergenic | 50.0% |
| CCCAAGAACCGATTATTCCG+AGG | - | tig0024530:33946-33965 | Msa1417840:intron | 50.0% | |
| ! | CCCTCGGAATAATCGGTTCT+TGG | + | tig0024530:33950-33969 | None:intergenic | 50.0% |
| TGGTATGCCACGGTTCAGAT+TGG | + | tig0024530:34094-34113 | None:intergenic | 50.0% | |
| TGAGCACGCTCTTGCTTATC+AGG | - | tig0024530:34268-34287 | Msa1417840:intron | 50.0% | |
| GATTTGAGCTTGAGCAGAGC+TGG | - | tig0024530:34332-34351 | Msa1417840:intron | 50.0% | |
| ! | ATGGATTGCCAGAGTCGAGT+GGG | - | tig0024530:34437-34456 | Msa1417840:CDS | 50.0% |
| ! | CTTTCTGGCCAAGCTCAACT+AGG | + | tig0024530:34499-34518 | None:intergenic | 50.0% |
| CTAGTTGAGCTTGGCCAGAA+AGG | - | tig0024530:34497-34516 | Msa1417840:CDS | 50.0% | |
| TCTCACCCCTTCCTTCATCA+TGG | - | tig0024530:34745-34764 | Msa1417840:intron | 50.0% | |
| !! | ATCTTCAGAGGTGCTGGTAG+GGG | + | tig0024530:34822-34841 | None:intergenic | 50.0% |
| ! | TGGAAAGAGTTGGTCGGCGT+GGG | + | tig0024530:30977-30996 | None:intergenic | 55.0% |
| ! | TTGGAAAGAGTTGGTCGGCG+TGG | + | tig0024530:30978-30997 | None:intergenic | 55.0% |
| TGCGGCGATGAAGGGATTGA+GGG | + | tig0024530:31068-31087 | None:intergenic | 55.0% | |
| TGAACATCGTCCAGCGTCTC+TGG | + | tig0024530:31621-31640 | None:intergenic | 55.0% | |
| CTGGGTACATCTTGTGCCAG+TGG | - | tig0024530:32654-32673 | Msa1417840:intron | 55.0% | |
| ! | GGGCCGGATACCGAGTTTTA+AGG | + | tig0024530:33929-33948 | None:intergenic | 55.0% |
| !! | GATGGATTGCCAGAGTCGAG+TGG | - | tig0024530:34436-34455 | Msa1417840:CDS | 55.0% |
| CAAGAATTGGGCACGTGTCC+CGG | - | tig0024530:34715-34734 | Msa1417840:intron | 55.0% | |
| ATGGACGACGACGACGACGT+TGG | + | tig0024530:30997-31016 | None:intergenic | 60.0% | |
| CTGCGGCGATGAAGGGATTG+AGG | + | tig0024530:31069-31088 | None:intergenic | 60.0% | |
| TTGGTAGGTCGTGGCAAGGC+TGG | - | tig0024530:32036-32055 | Msa1417840:intron | 60.0% | |
| CACAAACATGCCCAACCCCC+AGG | + | tig0024530:32534-32553 | None:intergenic | 60.0% | |
| GCTCCGGGCTCCTAAATCCA+AGG | - | tig0024530:32830-32849 | Msa1417840:intron | 60.0% | |
| !! | GATGGTGGGATTGGACCCCT+CGG | + | tig0024530:33966-33985 | None:intergenic | 60.0% |
| AAGGGGTGAGACCAAGAGCC+GGG | + | tig0024530:34736-34755 | None:intergenic | 60.0% | |
| GAAGGGGTGAGACCAAGAGC+CGG | + | tig0024530:34737-34756 | None:intergenic | 60.0% | |
| TCGGCGTGGGTGAGGAAGGA+AGG | + | tig0024530:30964-30983 | None:intergenic | 65.0% | |
| TTGGTCGGCGTGGGTGAGGA+AGG | + | tig0024530:30968-30987 | None:intergenic | 65.0% | |
| ! | AGAGTTGGTCGGCGTGGGTG+AGG | + | tig0024530:30972-30991 | None:intergenic | 65.0% |
| CCAGCGTCTCTGGTCCACCT+AGG | + | tig0024530:31611-31630 | None:intergenic | 65.0% | |
| CCTAGGTGGACCAGAGACGC+TGG | - | tig0024530:31608-31627 | Msa1417840:intron | 65.0% | |
| GTACAGGGCCCACTCGACTC+TGG | + | tig0024530:34448-34467 | None:intergenic | 65.0% | |
| GTCGAGTGGGCCCTGTACAG+TGG | - | tig0024530:34450-34469 | Msa1417840:CDS | 65.0% | |
| GGTCGTGGCAAGGCTGGAGC+AGG | - | tig0024530:32042-32061 | Msa1417840:intron | 70.0% | |
| TGGGCACGTGTCCCGGCTCT+TGG | - | tig0024530:34722-34741 | Msa1417840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024530 | gene | 30877 | 35193 | 30877 | ID=Msa1417840;Name=Msa1417840 |
| tig0024530 | mRNA | 30877 | 35193 | 30877 | ID=Msa1417840-mRNA-1;Parent=Msa1417840;Name=Msa1417840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=147|0.75|0.77|1|1|1|9|238|473 |
| tig0024530 | exon | 30877 | 31430 | 30877 | ID=Msa1417840-mRNA-1:exon:105;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 31521 | 31621 | 31521 | ID=Msa1417840-mRNA-1:exon:104;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 31712 | 31916 | 31712 | ID=Msa1417840-mRNA-1:exon:103;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 32231 | 32302 | 32231 | ID=Msa1417840-mRNA-1:exon:102;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 32416 | 32519 | 32416 | ID=Msa1417840-mRNA-1:exon:101;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 32699 | 32800 | 32699 | ID=Msa1417840-mRNA-1:exon:100;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 33162 | 33305 | 33162 | ID=Msa1417840-mRNA-1:exon:99;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 34399 | 34702 | 34399 | ID=Msa1417840-mRNA-1:exon:98;Parent=Msa1417840-mRNA-1 |
| tig0024530 | exon | 34973 | 35193 | 34973 | ID=Msa1417840-mRNA-1:exon:97;Parent=Msa1417840-mRNA-1 |
| tig0024530 | five_prime_UTR | 35047 | 35193 | 35047 | ID=Msa1417840-mRNA-1:five_prime_utr;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 34973 | 35046 | 34973 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 34399 | 34702 | 34399 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 33162 | 33305 | 33162 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 32699 | 32800 | 32699 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 32416 | 32519 | 32416 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 32231 | 32302 | 32231 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 31712 | 31916 | 31712 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 31521 | 31621 | 31521 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | CDS | 31115 | 31430 | 31115 | ID=Msa1417840-mRNA-1:cds;Parent=Msa1417840-mRNA-1 |
| tig0024530 | three_prime_UTR | 30877 | 31114 | 30877 | ID=Msa1417840-mRNA-1:three_prime_utr;Parent=Msa1417840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
