AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725480 MtrunA17_Chr5g0417141 96.907 291 3 3 1 286 1 290 0.0 561
Msa0725480 MtrunA17_Chr8g0361661 74.138 290 65 8 1 286 1 284 1.02e-121 349
Msa0725480 MtrunA17_Chr1g0208551 44.681 188 98 4 62 247 55 238 1.41e-55 180
Msa0725480 MtrunA17_Chr7g0251421 37.981 208 118 6 64 269 14 212 3.29e-44 149
Msa0725480 MtrunA17_Chr7g0269921 40.642 187 93 8 66 246 20 194 9.98e-38 132
Msa0725480 MtrunA17_Chr1g0194751 40.571 175 96 5 55 224 9 180 2.53e-30 114
Msa0725480 MtrunA17_Chr7g0217321 31.073 177 108 6 62 237 31 194 2.17e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725480 AT2G02960.3 76.471 221 48 3 56 275 33 250 1.57e-105 308
Msa0725480 AT2G02960.2 76.471 221 48 3 56 275 33 250 1.57e-105 308
Msa0725480 AT2G02960.6 76.471 221 48 3 56 275 33 250 1.57e-105 308
Msa0725480 AT2G02960.4 76.471 221 48 3 56 275 33 250 1.57e-105 308
Msa0725480 AT2G02960.1 76.471 221 48 3 56 275 33 250 1.57e-105 308
Msa0725480 AT3G47550.3 65.157 287 91 5 1 281 1 284 1.08e-104 306
Msa0725480 AT3G47550.6 65.157 287 91 5 1 281 1 284 1.08e-104 306
Msa0725480 AT1G14260.2 62.879 264 84 5 4 266 5 255 9.86e-90 268
Msa0725480 AT1G14260.1 62.879 264 84 5 4 266 5 255 9.86e-90 268
Msa0725480 AT1G14260.3 62.879 264 84 5 4 266 5 255 9.86e-90 268
Msa0725480 AT5G62460.3 74.561 228 48 4 55 274 80 305 1.01e-88 267
Msa0725480 AT5G62460.1 74.123 228 49 4 55 274 67 292 1.11e-88 266
Msa0725480 AT5G62460.2 74.123 228 49 4 55 274 67 292 1.11e-88 266
Msa0725480 AT3G47550.2 64.609 243 79 4 1 239 1 240 2.84e-87 261
Msa0725480 AT3G47550.1 61.086 221 79 4 1 217 1 218 1.75e-69 215
Msa0725480 AT2G02960.5 78.082 146 30 1 56 201 33 176 6.14e-69 215
Msa0725480 AT2G01275.2 39.344 244 126 7 1 241 1 225 2.22e-50 167
Msa0725480 AT2G01275.4 39.344 244 126 7 1 241 1 225 2.22e-50 167
Msa0725480 AT2G01275.1 39.344 244 126 7 1 241 1 225 2.22e-50 167
Msa0725480 AT2G01275.3 39.344 244 126 7 1 241 27 251 2.84e-50 167
Msa0725480 AT2G01275.5 39.344 244 126 7 1 241 27 251 2.84e-50 167
Msa0725480 AT5G38070.1 36.290 248 138 6 1 248 1 228 1.32e-40 142
Msa0725480 AT4G02075.3 37.629 194 103 4 55 246 9 186 1.01e-38 135
Msa0725480 AT4G02075.1 37.629 194 103 4 55 246 9 186 1.36e-38 135
Msa0725480 AT1G02610.1 36.066 183 106 4 66 246 20 193 8.91e-33 120
Msa0725480 AT1G02610.2 36.066 183 106 4 66 246 20 193 1.29e-32 119
Msa0725480 AT4G02075.2 38.596 171 84 5 55 220 9 163 1.97e-31 115

Find 123 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAACCACTATTGAAAT+AGG 0.204032 5_1:-25200404 Msa0725480:CDS
TTAACTCATTCAATTAAATT+AGG 0.210262 5_1:+25202954 None:intergenic
GGAAGACAGTGTTTCCAATT+TGG 0.230598 5_1:-25202358 Msa0725480:CDS
GTGCATGCCGCAAAAGTAAA+AGG 0.236416 5_1:+25199750 None:intergenic
ATTTAATTGAATGAGTTAAT+TGG 0.242052 5_1:-25202950 Msa0725480:five_prime_UTR
CTTGCGTGATCCTCGACTTT+TGG 0.256892 5_1:-25200181 Msa0725480:CDS
CAAGATCCAAACAATAAATA+TGG 0.283315 5_1:-25202987 None:intergenic
ATGATATAAGTATCATTAAA+AGG 0.308254 5_1:+25198836 None:intergenic
ACTAAACCATATTTATTGTT+TGG 0.323947 5_1:+25202981 None:intergenic
ATAGTGGTTTCTTCAGGAAT+AGG 0.347604 5_1:+25200413 None:intergenic
AATATTCAGCCTTATCAATC+TGG 0.348621 5_1:-25200458 Msa0725480:intron
ATTTCAATAGTGGTTTCTTC+AGG 0.350976 5_1:+25200407 None:intergenic
CGTTATCTAAGAAAGAAAAT+TGG 0.352231 5_1:+25202786 None:intergenic
ATCTTACCCTATTTCAATAG+TGG 0.355747 5_1:+25200397 None:intergenic
AGAGGAGGCTGGACATTATC+TGG 0.364653 5_1:-25200216 Msa0725480:CDS
TACCTTGCTATATTATGGCT+TGG 0.367363 5_1:-25199542 Msa0725480:CDS
TCAGGAATAGGGCGAGGTGG+TGG 0.373410 5_1:+25200425 None:intergenic
ACCGCCGATGCTGGATCATC+TGG 0.376709 5_1:-25202459 Msa0725480:CDS
ACCTTGCTATATTATGGCTT+GGG 0.376940 5_1:-25199541 Msa0725480:CDS
GGTTGTTGGTCAGGAACAAC+TGG 0.382007 5_1:+25202528 None:intergenic
GGCACAGGGAGTCTCCAAAT+TGG 0.387742 5_1:+25202344 None:intergenic
GATAAATTGAATGGATAGTA+AGG 0.394054 5_1:+25199036 None:intergenic
TAGTGGTTTCTTCAGGAATA+GGG 0.397798 5_1:+25200414 None:intergenic
CTTTCTCATTGCACCAATGC+TGG 0.404082 5_1:+25201272 None:intergenic
TGGTGGGCAGGTTGTTGGTC+AGG 0.404240 5_1:+25202519 None:intergenic
TCTCCGACCACCGCCGATGC+TGG 0.411796 5_1:-25202468 Msa0725480:CDS
ATCTGGATCTGGCTCGGCGG+TGG 0.414945 5_1:-25202442 Msa0725480:CDS
GAAGGTGGTGGGCAGGTTGT+TGG 0.414952 5_1:+25202514 None:intergenic
CACTTGGTTGATTCTACAAA+AGG 0.417150 5_1:-25198885 Msa0725480:three_prime_UTR
GACATTATCTGGCTCACCCT+TGG 0.418122 5_1:-25200205 Msa0725480:CDS
AACTTTCTTGCAGAGGAGGC+TGG 0.424560 5_1:-25200227 Msa0725480:intron
AGAAAGAAAATTGGATAAAG+AGG 0.426835 5_1:+25202795 None:intergenic
ATTGGTGGGTAGTAATAAAC+TGG 0.427361 5_1:-25202932 Msa0725480:five_prime_UTR
CGGTGGTCGGAGATGGCGAT+GGG 0.427989 5_1:+25202478 None:intergenic
AGAGGCAGAACGTCAATTCC+TGG 0.431011 5_1:-25200151 Msa0725480:CDS
CTACCAAGTGATCGCTCATT+GGG 0.436993 5_1:+25202574 None:intergenic
AAGAAACCACTATTGAAATA+GGG 0.437347 5_1:-25200403 Msa0725480:intron
TTCTACAAAAGGATTGCAAA+TGG 0.440259 5_1:-25198874 Msa0725480:three_prime_UTR
ACTGTAGGTCCTGGAGGTCC+TGG 0.440890 5_1:+25199220 None:intergenic
AAATCAAGATTAACAATAGA+TGG 0.445471 5_1:+25199114 None:intergenic
AATGATCGGAAGGAAGGTGG+TGG 0.456132 5_1:+25202502 None:intergenic
ACTACCAAGTGATCGCTCAT+TGG 0.456166 5_1:+25202573 None:intergenic
CAGGAATAGGGCGAGGTGGT+GGG 0.456864 5_1:+25200426 None:intergenic
GATGCTGGATCATCTGGATC+TGG 0.456987 5_1:-25202453 Msa0725480:CDS
GAGGAAAGTGTCGCGTGGAA+TGG 0.469624 5_1:+25202814 None:intergenic
AGGAAAGTGTCGCGTGGAAT+GGG 0.471327 5_1:+25202815 None:intergenic
GAACACTGACTTGTCTTTGT+CGG 0.478778 5_1:+25199496 None:intergenic
AATTTAGAACAAAAGCAACT+TGG 0.479789 5_1:+25199278 None:intergenic
CTCAACAAGCCTTCTTCGTA+TGG 0.480204 5_1:+25199140 None:intergenic
TCCTGCTGTACTGTAGGTCC+TGG 0.480306 5_1:+25199211 None:intergenic
AGATACGGCACTCAACCATC+TGG 0.480714 5_1:+25202388 None:intergenic
CTTGTCGATACACGTGCGAC+TGG 0.481611 5_1:+25202898 None:intergenic
GGTTGAGTGCCGTATCTGTC+AGG 0.494067 5_1:-25202382 Msa0725480:CDS
TCCTGGAGGTCCTGGTGCTA+TGG 0.494451 5_1:+25199228 None:intergenic
GCGGTGGTCGGAGATGGCGA+TGG 0.495396 5_1:+25202477 None:intergenic
GCATCGGCGGTGGTCGGAGA+TGG 0.496661 5_1:+25202471 None:intergenic
TCACAGATCGATAAATTGAA+TGG 0.499500 5_1:+25199027 None:intergenic
TCGGAAGGAAGGTGGTGGGC+AGG 0.502664 5_1:+25202507 None:intergenic
GAGACTACCGCTACAGGCAC+AGG 0.503593 5_1:+25202329 None:intergenic
AACTTGTGAGATATGTCATC+AGG 0.505014 5_1:-25201242 Msa0725480:intron
TACCTTGAGACTACCGCTAC+AGG 0.507838 5_1:+25202323 None:intergenic
CAGCATTGGTGCAATGAGAA+AGG 0.519925 5_1:-25201271 Msa0725480:CDS
ATTTAGAACAAAAGCAACTT+GGG 0.519948 5_1:+25199279 None:intergenic
GCCATAGCACCAGGACCTCC+AGG 0.524360 5_1:-25199229 Msa0725480:CDS
GGGAATGATCGGAAGGAAGG+TGG 0.530407 5_1:+25202499 None:intergenic
TCGAGGATCACGCAAGTCCA+AGG 0.531123 5_1:+25200188 None:intergenic
TCCAGGACCTACAGTACAGC+AGG 0.533517 5_1:-25199212 Msa0725480:CDS
ACAGAAAGTGTGTCCAGCAT+TGG 0.533571 5_1:-25201285 Msa0725480:CDS
ACTTGTTCCTGCTGTACTGT+AGG 0.533667 5_1:+25199205 None:intergenic
TAATTGAATGAGTTAATTGG+TGG 0.533702 5_1:-25202947 Msa0725480:five_prime_UTR
GAACAACTGGGTGGTCGAGT+TGG 0.537838 5_1:+25202541 None:intergenic
TTTCCCAATGAGCGATCACT+TGG 0.540113 5_1:-25202577 Msa0725480:exon
GCAGTATACCCAGATTGATA+AGG 0.540164 5_1:+25200449 None:intergenic
TGCATGCCGCAAAAGTAAAA+GGG 0.544452 5_1:+25199751 None:intergenic
ATGGGGAATGATCGGAAGGA+AGG 0.548616 5_1:+25202496 None:intergenic
CTACACTTCGCCATAGCACC+AGG 0.550759 5_1:-25199238 Msa0725480:CDS
ATATTCAGCCTTATCAATCT+GGG 0.551118 5_1:-25200457 Msa0725480:intron
ACTCATCATATTCAGCATCC+AGG 0.551789 5_1:+25200133 None:intergenic
TTCGTATGGCATACATGCCA+TGG 0.552444 5_1:+25199154 None:intergenic
ACATGCAGATTTACCGCCGC+TGG 0.557830 5_1:+25199062 None:intergenic
GCATGTATGCCATACGAAGA+AGG 0.560468 5_1:-25199149 Msa0725480:three_prime_UTR
CGCGTGGAATGGGTATGGTA+TGG 0.561321 5_1:+25202825 None:intergenic
TGCTGTACTGTAGGTCCTGG+AGG 0.564156 5_1:+25199214 None:intergenic
AGATGGCGATGGGGAATGAT+CGG 0.565732 5_1:+25202488 None:intergenic
AGGAATAGGGCGAGGTGGTG+GGG 0.566322 5_1:+25200427 None:intergenic
TGTCTTCCTCCTGACAGATA+CGG 0.567028 5_1:+25202373 None:intergenic
TGCCTGTAGCGGTAGTCTCA+AGG 0.574911 5_1:-25202325 Msa0725480:intron
AGTGTCGCGTGGAATGGGTA+TGG 0.580718 5_1:+25202820 None:intergenic
GTTTCTTCAGGAATAGGGCG+AGG 0.582205 5_1:+25200419 None:intergenic
GGCGATGGGGAATGATCGGA+AGG 0.583505 5_1:+25202492 None:intergenic
GGCTCGGCGGTGGATCGTGA+TGG 0.587661 5_1:-25202432 Msa0725480:CDS
AGATGATCCAGCATCGGCGG+TGG 0.592577 5_1:+25202461 None:intergenic
CACTCAACCATCTGGATCAG+TGG 0.593877 5_1:+25202396 None:intergenic
CATGCACTCTCTGTAACAGA+TGG 0.596020 5_1:-25199734 Msa0725480:CDS
ATAAATTGAATGGATAGTAA+GGG 0.598520 5_1:+25199037 None:intergenic
GATCCAGCATCGGCGGTGGT+CGG 0.599580 5_1:+25202465 None:intergenic
ATGATCGGAAGGAAGGTGGT+GGG 0.601522 5_1:+25202503 None:intergenic
TGGATCATCTGGATCTGGCT+CGG 0.605051 5_1:-25202448 Msa0725480:CDS
TAAATCACTAGTTATATAAG+CGG 0.605524 5_1:+25198968 None:intergenic
TATGCTGCTTCTAATGCTAG+TGG 0.606341 5_1:-25200111 Msa0725480:CDS
CTAAATTCTGGGCAGCGTAG+AGG 0.608192 5_1:-25199262 Msa0725480:CDS
TCCAGATGATCCAGCATCGG+CGG 0.608773 5_1:+25202458 None:intergenic
CACTGACTTGTCTTTGTCGG+CGG 0.613302 5_1:+25199499 None:intergenic
GGATCGTGATGGCGATGAGG+AGG 0.616205 5_1:-25202421 Msa0725480:CDS
GCCCAAGCCATAATATAGCA+AGG 0.617032 5_1:+25199540 None:intergenic
AATTGAATGAGTTAATTGGT+GGG 0.618931 5_1:-25202946 Msa0725480:five_prime_UTR
CGAGGATCACGCAAGTCCAA+GGG 0.619797 5_1:+25200189 None:intergenic
AGATCCAGATGATCCAGCAT+CGG 0.626452 5_1:+25202455 None:intergenic
AGACTACCGCTACAGGCACA+GGG 0.636998 5_1:+25202330 None:intergenic
GAGACTCCCTGTGCCTGTAG+CGG 0.639323 5_1:-25202336 Msa0725480:CDS
ATCATCTGGATCTGGCTCGG+CGG 0.641368 5_1:-25202445 Msa0725480:CDS
TCTTCAGGAATAGGGCGAGG+TGG 0.642080 5_1:+25200422 None:intergenic
TCTGCAATCGCCAAAAGTCG+AGG 0.642761 5_1:+25200171 None:intergenic
GGAGGAGCCACTGATCCAGA+TGG 0.656675 5_1:-25202403 Msa0725480:CDS
GGTGGTCGGAGATGGCGATG+GGG 0.673400 5_1:+25202479 None:intergenic
TACTTATGTACATATACCAG+CGG 0.677786 5_1:-25199078 Msa0725480:three_prime_UTR
GGTGGATCGTGATGGCGATG+AGG 0.679783 5_1:-25202424 Msa0725480:CDS
TGAGTGCCGTATCTGTCAGG+AGG 0.681591 5_1:-25202379 Msa0725480:CDS
GTTGTTGGTCAGGAACAACT+GGG 0.683593 5_1:+25202529 None:intergenic
ATAAAGAGGAAAGTGTCGCG+TGG 0.716144 5_1:+25202809 None:intergenic
TTATGTACATATACCAGCGG+CGG 0.721932 5_1:-25199075 Msa0725480:three_prime_UTR
GTTGGTCAGGAACAACTGGG+TGG 0.729451 5_1:+25202532 None:intergenic
TTACAATTAGAGCAGCTGAG+CGG 0.741254 5_1:+25200076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTTTAATTTGAATTTTT+AGG - chr5_1:25199199-25199218 Msa0725480:exon 10.0%
!!! ATCTTTAATTTGAATTTTTA+GGG - chr5_1:25199200-25199219 Msa0725480:exon 10.0%
!! TTAACTCATTCAATTAAATT+AGG + chr5_1:25198866-25198885 None:intergenic 15.0%
!! ATTTAATTGAATGAGTTAAT+TGG - chr5_1:25198867-25198886 Msa0725480:three_prime_UTR 15.0%
!!! CGTTATTTTTTAATTTTTGT+AGG - chr5_1:25199542-25199561 Msa0725480:CDS 15.0%
!! TTCATAAAAAATGTGAATAA+TGG - chr5_1:25199998-25200017 Msa0725480:intron 15.0%
!!! TTTTGTCTATGAAAAAAATA+TGG - chr5_1:25201116-25201135 Msa0725480:intron 15.0%
!! TTTGTCTATGAAAAAAATAT+GGG - chr5_1:25201117-25201136 Msa0725480:intron 15.0%
!! ATGATATAAGTATCATTAAA+AGG + chr5_1:25202984-25203003 None:intergenic 15.0%
!! ACTAAACCATATTTATTGTT+TGG + chr5_1:25198839-25198858 None:intergenic 20.0%
!!! TCTTCTAACTTTTCAAATTT+CGG - chr5_1:25199114-25199133 Msa0725480:three_prime_UTR 20.0%
!! TATTATGAATGAGATAGAAA+AGG + chr5_1:25199144-25199163 None:intergenic 20.0%
!! AATCAATAATCATGTATGAT+TGG - chr5_1:25199673-25199692 Msa0725480:intron 20.0%
!! ATCAATAATCATGTATGATT+GGG - chr5_1:25199674-25199693 Msa0725480:intron 20.0%
!! AAAATTCCACACAAAAATAT+CGG + chr5_1:25200024-25200043 None:intergenic 20.0%
!! AAGCAAAAAATAATTTCTCA+CGG + chr5_1:25200373-25200392 None:intergenic 20.0%
!!! ATGTGAATGTTTTTTTAAAG+TGG - chr5_1:25200664-25200683 Msa0725480:intron 20.0%
!! ATATGTTATATACATGACTT+GGG + chr5_1:25200850-25200869 None:intergenic 20.0%
!! TATATGTTATATACATGACT+TGG + chr5_1:25200851-25200870 None:intergenic 20.0%
!! AAGTCATGTATATAACATAT+AGG - chr5_1:25200850-25200869 Msa0725480:intron 20.0%
!!! TTTTCAATTTTGTTAGGAAA+TGG - chr5_1:25201048-25201067 Msa0725480:intron 20.0%
!!! TTTCAATTTTGTTAGGAAAT+GGG - chr5_1:25201049-25201068 Msa0725480:intron 20.0%
!! TTGTCTATGAAAAAAATATG+GGG - chr5_1:25201118-25201137 Msa0725480:intron 20.0%
!!! TTATACAGAGTTTTGTAAAA+TGG + chr5_1:25201787-25201806 None:intergenic 20.0%
!! TTACAAAACTCTGTATAATT+TGG - chr5_1:25201789-25201808 Msa0725480:intron 20.0%
!!! TAACCCAATTTTTTATTGTT+TGG - chr5_1:25202031-25202050 Msa0725480:intron 20.0%
!! GTACCAAACAATAAAAAATT+GGG + chr5_1:25202037-25202056 None:intergenic 20.0%
!! TGTACCAAACAATAAAAAAT+TGG + chr5_1:25202038-25202057 None:intergenic 20.0%
!! ACATAAATCAATATAACAGT+CGG + chr5_1:25202186-25202205 None:intergenic 20.0%
!! AAATCAAGATTAACAATAGA+TGG + chr5_1:25202706-25202725 None:intergenic 20.0%
!! ATAAATTGAATGGATAGTAA+GGG + chr5_1:25202783-25202802 None:intergenic 20.0%
!! TAAATCACTAGTTATATAAG+CGG + chr5_1:25202852-25202871 None:intergenic 20.0%
! TAATTGAATGAGTTAATTGG+TGG - chr5_1:25198870-25198889 Msa0725480:three_prime_UTR 25.0%
! AATTGAATGAGTTAATTGGT+GGG - chr5_1:25198871-25198890 Msa0725480:three_prime_UTR 25.0%
! AGAAAGAAAATTGGATAAAG+AGG + chr5_1:25199025-25199044 None:intergenic 25.0%
! CGTTATCTAAGAAAGAAAAT+TGG + chr5_1:25199034-25199053 None:intergenic 25.0%
! TCAATAATCATGTATGATTG+GGG - chr5_1:25199675-25199694 Msa0725480:intron 25.0%
!! ATTGATCGATCATATCATTT+TGG + chr5_1:25199892-25199911 None:intergenic 25.0%
! TGATCGATCAATTTGAAAAA+TGG - chr5_1:25199900-25199919 Msa0725480:intron 25.0%
! TATGAAGCTAATTCAGATTA+GGG + chr5_1:25199984-25200003 None:intergenic 25.0%
! TTATGAAGCTAATTCAGATT+AGG + chr5_1:25199985-25200004 None:intergenic 25.0%
! GAGTTTATGAAATATTGTGT+TGG - chr5_1:25200279-25200298 Msa0725480:intron 25.0%
! AGCAAAAAATAATTTCTCAC+GGG + chr5_1:25200372-25200391 None:intergenic 25.0%
! TGATTAATGCATTAATGTGA+TGG - chr5_1:25200406-25200425 Msa0725480:CDS 25.0%
!! ATTTTTGAACTGTTGGTATT+TGG - chr5_1:25200492-25200511 Msa0725480:intron 25.0%
!! CTAATAAGTTGTCTTTTTGT+CGG - chr5_1:25200629-25200648 Msa0725480:intron 25.0%
!! TCCTGATTTTCAATTTTGTT+AGG - chr5_1:25201042-25201061 Msa0725480:intron 25.0%
! TCCTAACAAAATTGAAAATC+AGG + chr5_1:25201046-25201065 None:intergenic 25.0%
! TGTCTATGAAAAAAATATGG+GGG - chr5_1:25201119-25201138 Msa0725480:intron 25.0%
! CACAACTAAATTATACTTCA+AGG - chr5_1:25201167-25201186 Msa0725480:intron 25.0%
!! TTGTAACTTTGTATTTTGTG+TGG - chr5_1:25201215-25201234 Msa0725480:intron 25.0%
! CACAAATGATATTAAGCATT+GGG + chr5_1:25201266-25201285 None:intergenic 25.0%
! ACACAAATGATATTAAGCAT+TGG + chr5_1:25201267-25201286 None:intergenic 25.0%
! AAGAAACCACTATTGAAATA+GGG - chr5_1:25201414-25201433 Msa0725480:intron 25.0%
!!! GTTATATTGATTTATGTGAC+CGG - chr5_1:25202189-25202208 Msa0725480:intron 25.0%
!!! TCTTTTACCTTGCTATATTA+TGG - chr5_1:25202270-25202289 Msa0725480:intron 25.0%
!!! ACTGTTTTTGTATTTTGAAC+AGG - chr5_1:25202494-25202513 Msa0725480:CDS 25.0%
!! ATTTAGAACAAAAGCAACTT+GGG + chr5_1:25202541-25202560 None:intergenic 25.0%
!! AATTTAGAACAAAAGCAACT+TGG + chr5_1:25202542-25202561 None:intergenic 25.0%
!!! TTGCTTTTGTTCTAAATTCT+GGG - chr5_1:25202544-25202563 Msa0725480:CDS 25.0%
! GATAAATTGAATGGATAGTA+AGG + chr5_1:25202784-25202803 None:intergenic 25.0%
!!! TTCTTATTTTCGTTCAATTG+AGG - chr5_1:25202896-25202915 Msa0725480:five_prime_UTR 25.0%
CAATAATCATGTATGATTGG+GGG - chr5_1:25199676-25199695 Msa0725480:intron 30.0%
AAAAATAAGCCAATCCAAAC+AGG + chr5_1:25199702-25199721 None:intergenic 30.0%
TGTATAAGCTGCTAAAAGTA+AGG + chr5_1:25199728-25199747 None:intergenic 30.0%
GCAGCTTATACAAATAAGTA+AGG - chr5_1:25199736-25199755 Msa0725480:CDS 30.0%
TATCATTCATAAGCTTGTCA+AGG - chr5_1:25199767-25199786 Msa0725480:intron 30.0%
CGATCAATTTGAAAAATGGT+TGG - chr5_1:25199904-25199923 Msa0725480:intron 30.0%
ATGAAGCTAATTCAGATTAG+GGG + chr5_1:25199983-25200002 None:intergenic 30.0%
! TGCATGATAATTTAAGACAC+CGG - chr5_1:25200094-25200113 Msa0725480:CDS 30.0%
! TGTTTAAGAGTATGTGTTGA+TGG - chr5_1:25200157-25200176 Msa0725480:CDS 30.0%
TCCACATCAATGTAGAAAAT+GGG + chr5_1:25200258-25200277 None:intergenic 30.0%
ATCCACATCAATGTAGAAAA+TGG + chr5_1:25200259-25200278 None:intergenic 30.0%
! AAGTGATCTAATTTGCAACT+AGG + chr5_1:25200328-25200347 None:intergenic 30.0%
ATACCAACAGTTCAAAAATC+AGG + chr5_1:25200491-25200510 None:intergenic 30.0%
CGACAAAAAGACAACTTATT+AGG + chr5_1:25200631-25200650 None:intergenic 30.0%
!! ATGATTGTTCTGAAATCAGT+AGG + chr5_1:25200780-25200799 None:intergenic 30.0%
! ACTGATTTCAGAACAATCAT+TGG - chr5_1:25200780-25200799 Msa0725480:intron 30.0%
AAAGCTCTATTGTTAGTAGA+AGG + chr5_1:25200810-25200829 None:intergenic 30.0%
TACAGTAGTGTAACATATGT+TGG - chr5_1:25200874-25200893 Msa0725480:intron 30.0%
TCACATTTCAAAACCACTTT+AGG - chr5_1:25200970-25200989 Msa0725480:intron 30.0%
TTGTTAGGAAATGGGATTTA+AGG - chr5_1:25201057-25201076 Msa0725480:intron 30.0%
GTCTATGAAAAAAATATGGG+GGG - chr5_1:25201120-25201139 Msa0725480:intron 30.0%
! AGCATTGGGTTTAATTCAAA+AGG + chr5_1:25201252-25201271 None:intergenic 30.0%
! AATATTCAGCCTTATCAATC+TGG - chr5_1:25201359-25201378 Msa0725480:intron 30.0%
! ATATTCAGCCTTATCAATCT+GGG - chr5_1:25201360-25201379 Msa0725480:intron 30.0%
ATTTCAATAGTGGTTTCTTC+AGG + chr5_1:25201413-25201432 None:intergenic 30.0%
GAAGAAACCACTATTGAAAT+AGG - chr5_1:25201413-25201432 Msa0725480:intron 30.0%
ATCTTACCCTATTTCAATAG+TGG + chr5_1:25201423-25201442 None:intergenic 30.0%
!! ACAGAGTTTTGTAAAATGGA+AGG + chr5_1:25201783-25201802 None:intergenic 30.0%
TTATTGTTTGGTACAGTTGA+TGG - chr5_1:25202043-25202062 Msa0725480:intron 30.0%
ATCACTTACGGAGAAAAAAT+TGG + chr5_1:25202132-25202151 None:intergenic 30.0%
ATAGAGACTCAAATCACTTA+CGG + chr5_1:25202144-25202163 None:intergenic 30.0%
!!! GTTAGTTTTGTTTAGTCTGT+TGG - chr5_1:25202366-25202385 Msa0725480:CDS 30.0%
!! GTTTTTGTATTTTGAACAGG+AGG - chr5_1:25202497-25202516 Msa0725480:CDS 30.0%
!!! GTTGCTTTTGTTCTAAATTC+TGG - chr5_1:25202543-25202562 Msa0725480:CDS 30.0%
TACTTATGTACATATACCAG+CGG - chr5_1:25202739-25202758 Msa0725480:five_prime_UTR 30.0%
TCACAGATCGATAAATTGAA+TGG + chr5_1:25202793-25202812 None:intergenic 30.0%
!!! AGGATTATTTTGATAGCACT+TGG - chr5_1:25202916-25202935 Msa0725480:five_prime_UTR 30.0%
TTCTACAAAAGGATTGCAAA+TGG - chr5_1:25202943-25202962 Msa0725480:five_prime_UTR 30.0%
! ATTGGTGGGTAGTAATAAAC+TGG - chr5_1:25198885-25198904 Msa0725480:three_prime_UTR 35.0%
!! TAATGGCCGATATTTTTGTG+TGG - chr5_1:25200015-25200034 Msa0725480:intron 35.0%
TAATTTAACACTGACACCTC+AGG + chr5_1:25200132-25200151 None:intergenic 35.0%
! ACCCATTTTCTACATTGATG+TGG - chr5_1:25200254-25200273 Msa0725480:intron 35.0%
! CTTCCTGATTTTTGAACTGT+TGG - chr5_1:25200485-25200504 Msa0725480:intron 35.0%
AACTTGTGAGATATGTCATC+AGG - chr5_1:25200575-25200594 Msa0725480:intron 35.0%
!! ATTGTTCTGAAATCAGTAGG+CGG + chr5_1:25200777-25200796 None:intergenic 35.0%
TGCAATAGAGCTCTTATATG+TGG + chr5_1:25200927-25200946 None:intergenic 35.0%
TCGTAGACTTGTGTGATTTA+TGG - chr5_1:25200994-25201013 Msa0725480:intron 35.0%
AAAAAAATATGGGGGGAACA+AGG - chr5_1:25201127-25201146 Msa0725480:intron 35.0%
CTGAATATTACATGCACAGA+AGG + chr5_1:25201348-25201367 None:intergenic 35.0%
TAGTGGTTTCTTCAGGAATA+GGG + chr5_1:25201406-25201425 None:intergenic 35.0%
ATAGTGGTTTCTTCAGGAAT+AGG + chr5_1:25201407-25201426 None:intergenic 35.0%
TGTGTTGCATTAGTTAGCTA+TGG - chr5_1:25201521-25201540 Msa0725480:intron 35.0%
TGTTATGAACTTTCTTGCAG+AGG - chr5_1:25201583-25201602 Msa0725480:intron 35.0%
! GTTTTGTAAAATGGAAGGCA+AGG + chr5_1:25201778-25201797 None:intergenic 35.0%
GCTACTTGACAAAAGGTTAT+AGG - chr5_1:25201852-25201871 Msa0725480:intron 35.0%
CATTTGTTCAGTGTTTGTGT+TGG - chr5_1:25201970-25201989 Msa0725480:intron 35.0%
CTTACGGAGAAAAAATTGGA+TGG + chr5_1:25202128-25202147 None:intergenic 35.0%
AGATAGTAGGCTAATTAGGT+TGG + chr5_1:25202217-25202236 None:intergenic 35.0%
CAGAAGATAGTAGGCTAATT+AGG + chr5_1:25202221-25202240 None:intergenic 35.0%
! TACCTTGCTATATTATGGCT+TGG - chr5_1:25202275-25202294 Msa0725480:intron 35.0%
! ACCTTGCTATATTATGGCTT+GGG - chr5_1:25202276-25202295 Msa0725480:intron 35.0%
! CACTTGGTTGATTCTACAAA+AGG - chr5_1:25202932-25202951 Msa0725480:five_prime_UTR 35.0%
GGAAGACAGTGTTTCCAATT+TGG - chr5_1:25199459-25199478 Msa0725480:intron 40.0%
GGAGTTGACACAAATGAGAT+CGG - chr5_1:25199925-25199944 Msa0725480:intron 40.0%
! AGTTGTCTTTTTGTCGGTGA+TGG - chr5_1:25200635-25200654 Msa0725480:intron 40.0%
! GTTGTCTTTTTGTCGGTGAT+GGG - chr5_1:25200636-25200655 Msa0725480:intron 40.0%
TATGTGGACACAACATCACA+TGG + chr5_1:25200911-25200930 None:intergenic 40.0%
ATGCCAAAGACAAGGACAAT+TGG + chr5_1:25200951-25200970 None:intergenic 40.0%
GAAATGTGATGCCAAAGACA+AGG + chr5_1:25200959-25200978 None:intergenic 40.0%
ACAAGTCTACGAACCTAAAG+TGG + chr5_1:25200986-25201005 None:intergenic 40.0%
ACATGCACAGAAGGAAAAAG+AGG + chr5_1:25201339-25201358 None:intergenic 40.0%
GCAGTATACCCAGATTGATA+AGG + chr5_1:25201371-25201390 None:intergenic 40.0%
TATGAACTTTCTTGCAGAGG+AGG - chr5_1:25201586-25201605 Msa0725480:intron 40.0%
ACTCATCATATTCAGCATCC+AGG + chr5_1:25201687-25201706 None:intergenic 40.0%
! TATGCTGCTTCTAATGCTAG+TGG - chr5_1:25201706-25201725 Msa0725480:intron 40.0%
TTACAATTAGAGCAGCTGAG+CGG + chr5_1:25201744-25201763 None:intergenic 40.0%
GTAGCATTTCCCACAACATA+AGG + chr5_1:25201837-25201856 None:intergenic 40.0%
! GGGAAATGCTACTTGACAAA+AGG - chr5_1:25201845-25201864 Msa0725480:intron 40.0%
! ACAAATGCAGTGAAGCATCA+GGG + chr5_1:25201957-25201976 None:intergenic 40.0%
! AACAAATGCAGTGAAGCATC+AGG + chr5_1:25201958-25201977 None:intergenic 40.0%
!! TGATGGCCCTTTTACTTTTG+CGG - chr5_1:25202060-25202079 Msa0725480:intron 40.0%
TGCATGCCGCAAAAGTAAAA+GGG + chr5_1:25202069-25202088 None:intergenic 40.0%
GAAAAGCTGCAGAAGATAGT+AGG + chr5_1:25202230-25202249 None:intergenic 40.0%
!! GAACACTGACTTGTCTTTGT+CGG + chr5_1:25202324-25202343 None:intergenic 40.0%
AAGCTGCATACAATGAGTTC+TGG - chr5_1:25202428-25202447 Msa0725480:CDS 40.0%
AGCTGCATACAATGAGTTCT+GGG - chr5_1:25202429-25202448 Msa0725480:CDS 40.0%
!! CAGTTTTATGTGAGACACCA+TGG - chr5_1:25202646-25202665 Msa0725480:intron 40.0%
TTATGTACATATACCAGCGG+CGG - chr5_1:25202742-25202761 Msa0725480:five_prime_UTR 40.0%
!! ATAAAGAGGAAAGTGTCGCG+TGG + chr5_1:25199011-25199030 None:intergenic 45.0%
TTTCCCAATGAGCGATCACT+TGG - chr5_1:25199240-25199259 Msa0725480:CDS 45.0%
CTACCAAGTGATCGCTCATT+GGG + chr5_1:25199246-25199265 None:intergenic 45.0%
ACTACCAAGTGATCGCTCAT+TGG + chr5_1:25199247-25199266 None:intergenic 45.0%
GTTGTTGGTCAGGAACAACT+GGG + chr5_1:25199291-25199310 None:intergenic 45.0%
AGATCCAGATGATCCAGCAT+CGG + chr5_1:25199365-25199384 None:intergenic 45.0%
TGTCTTCCTCCTGACAGATA+CGG + chr5_1:25199447-25199466 None:intergenic 45.0%
GTTGACACAAATGAGATCGG+TGG - chr5_1:25199928-25199947 Msa0725480:intron 45.0%
GTCTATGTGTCAGTGTCATC+TGG + chr5_1:25200073-25200092 None:intergenic 45.0%
TAAGACACCGGATACACCTT+CGG - chr5_1:25200106-25200125 Msa0725480:CDS 45.0%
GTCAAATGCAAGACGAGCAA+TGG + chr5_1:25200435-25200454 None:intergenic 45.0%
! ACAGAAAGTGTGTCCAGCAT+TGG - chr5_1:25200532-25200551 Msa0725480:intron 45.0%
CTTTCTCATTGCACCAATGC+TGG + chr5_1:25200548-25200567 None:intergenic 45.0%
!! CAGCATTGGTGCAATGAGAA+AGG - chr5_1:25200546-25200565 Msa0725480:intron 45.0%
! TGTTTAAGACCCTCCTTCCT+TGG - chr5_1:25200711-25200730 Msa0725480:intron 45.0%
TATGCATACGATGCCAAGGA+AGG + chr5_1:25200727-25200746 None:intergenic 45.0%
!! CGTGCAGGCATCTAAGATTT+TGG - chr5_1:25200747-25200766 Msa0725480:intron 45.0%
!! TTCTGAAATCAGTAGGCGGT+GGG + chr5_1:25200773-25200792 None:intergenic 45.0%
CAGCCAATTGTCCTTGTCTT+TGG - chr5_1:25200945-25200964 Msa0725480:intron 45.0%
GGGGGAACAAGGAAATTCTT+AGG - chr5_1:25201138-25201157 Msa0725480:intron 45.0%
GCTCAGCTGCTCTAATTGTA+AGG - chr5_1:25201743-25201762 Msa0725480:intron 45.0%
CACCAGCATCCTTATGTTGT+GGG - chr5_1:25201825-25201844 Msa0725480:intron 45.0%
TTCCCACAACATAAGGATGC+TGG + chr5_1:25201830-25201849 None:intergenic 45.0%
GTGCATGCCGCAAAAGTAAA+AGG + chr5_1:25202070-25202089 None:intergenic 45.0%
CATGCACTCTCTGTAACAGA+TGG - chr5_1:25202083-25202102 Msa0725480:intron 45.0%
!! TAGGCTAATTAGGTTGGCTC+CGG + chr5_1:25202211-25202230 None:intergenic 45.0%
GCCCAAGCCATAATATAGCA+AGG + chr5_1:25202280-25202299 None:intergenic 45.0%
ACTTGTTCCTGCTGTACTGT+AGG + chr5_1:25202615-25202634 None:intergenic 45.0%
TTCGTATGGCATACATGCCA+TGG + chr5_1:25202666-25202685 None:intergenic 45.0%
GCATGTATGCCATACGAAGA+AGG - chr5_1:25202668-25202687 Msa0725480:intron 45.0%
CTCAACAAGCCTTCTTCGTA+TGG + chr5_1:25202680-25202699 None:intergenic 45.0%
!!! TTGTTTTTTTTTTTTTTTTA+TGG - chr5_1:25199567-25199586 Msa0725480:CDS 5.0%
!! CAAAATAATATAATATAATT+AGG + chr5_1:25201298-25201317 None:intergenic 5.0%
!! AGGAAAGTGTCGCGTGGAAT+GGG + chr5_1:25199005-25199024 None:intergenic 50.0%
GGTTGTTGGTCAGGAACAAC+TGG + chr5_1:25199292-25199311 None:intergenic 50.0%
ATGATCGGAAGGAAGGTGGT+GGG + chr5_1:25199317-25199336 None:intergenic 50.0%
AATGATCGGAAGGAAGGTGG+TGG + chr5_1:25199318-25199337 None:intergenic 50.0%
ATGGGGAATGATCGGAAGGA+AGG + chr5_1:25199324-25199343 None:intergenic 50.0%
AGATGGCGATGGGGAATGAT+CGG + chr5_1:25199332-25199351 None:intergenic 50.0%
GATGCTGGATCATCTGGATC+TGG - chr5_1:25199364-25199383 Msa0725480:intron 50.0%
TGGATCATCTGGATCTGGCT+CGG - chr5_1:25199369-25199388 Msa0725480:intron 50.0%
CACTCAACCATCTGGATCAG+TGG + chr5_1:25199424-25199443 None:intergenic 50.0%
AGATACGGCACTCAACCATC+TGG + chr5_1:25199432-25199451 None:intergenic 50.0%
TACCTTGAGACTACCGCTAC+AGG + chr5_1:25199497-25199516 None:intergenic 50.0%
TGTATGATTGGGGGCCTGTT+TGG - chr5_1:25199685-25199704 Msa0725480:intron 50.0%
GGTTCGCTCTGACCTTGTAT+AGG - chr5_1:25199949-25199968 Msa0725480:intron 50.0%
GGGGAGTCACAACCTATACA+AGG + chr5_1:25199964-25199983 None:intergenic 50.0%
CATACGATGCCAAGGAAGGA+GGG + chr5_1:25200723-25200742 None:intergenic 50.0%
CACGTATGCATACGATGCCA+AGG + chr5_1:25200731-25200750 None:intergenic 50.0%
!! GTTCTGAAATCAGTAGGCGG+TGG + chr5_1:25200774-25200793 None:intergenic 50.0%
GTTTCTTCAGGAATAGGGCG+AGG + chr5_1:25201401-25201420 None:intergenic 50.0%
AACTTTCTTGCAGAGGAGGC+TGG - chr5_1:25201590-25201609 Msa0725480:intron 50.0%
AGAGGAGGCTGGACATTATC+TGG - chr5_1:25201601-25201620 Msa0725480:intron 50.0%
! GACATTATCTGGCTCACCCT+TGG - chr5_1:25201612-25201631 Msa0725480:intron 50.0%
! CTTGCGTGATCCTCGACTTT+TGG - chr5_1:25201636-25201655 Msa0725480:intron 50.0%
TCTGCAATCGCCAAAAGTCG+AGG + chr5_1:25201649-25201668 None:intergenic 50.0%
! TCGACTTTTGGCGATTGCAG+AGG - chr5_1:25201648-25201667 Msa0725480:intron 50.0%
AGAGGCAGAACGTCAATTCC+TGG - chr5_1:25201666-25201685 Msa0725480:intron 50.0%
GCACCAGCATCCTTATGTTG+TGG - chr5_1:25201824-25201843 Msa0725480:intron 50.0%
! CTTTTCTTGCTTCGAGCTGC+TGG - chr5_1:25202244-25202263 Msa0725480:intron 50.0%
!! CACTGACTTGTCTTTGTCGG+CGG + chr5_1:25202321-25202340 None:intergenic 50.0%
CTAAATTCTGGGCAGCGTAG+AGG - chr5_1:25202555-25202574 Msa0725480:CDS 50.0%
CTTGTCGATACACGTGCGAC+TGG + chr5_1:25198922-25198941 None:intergenic 55.0%
CGCGTGGAATGGGTATGGTA+TGG + chr5_1:25198995-25199014 None:intergenic 55.0%
AGTGTCGCGTGGAATGGGTA+TGG + chr5_1:25199000-25199019 None:intergenic 55.0%
!! GAGGAAAGTGTCGCGTGGAA+TGG + chr5_1:25199006-25199025 None:intergenic 55.0%
GAACAACTGGGTGGTCGAGT+TGG + chr5_1:25199279-25199298 None:intergenic 55.0%
GTTGGTCAGGAACAACTGGG+TGG + chr5_1:25199288-25199307 None:intergenic 55.0%
GGGAATGATCGGAAGGAAGG+TGG + chr5_1:25199321-25199340 None:intergenic 55.0%
! TCCAGATGATCCAGCATCGG+CGG + chr5_1:25199362-25199381 None:intergenic 55.0%
!! ATCATCTGGATCTGGCTCGG+CGG - chr5_1:25199372-25199391 Msa0725480:intron 55.0%
! GGTTGAGTGCCGTATCTGTC+AGG - chr5_1:25199435-25199454 Msa0725480:intron 55.0%
! TGAGTGCCGTATCTGTCAGG+AGG - chr5_1:25199438-25199457 Msa0725480:intron 55.0%
GGCACAGGGAGTCTCCAAAT+TGG + chr5_1:25199476-25199495 None:intergenic 55.0%
AGACTACCGCTACAGGCACA+GGG + chr5_1:25199490-25199509 None:intergenic 55.0%
TGCCTGTAGCGGTAGTCTCA+AGG - chr5_1:25199492-25199511 Msa0725480:intron 55.0%
GATTGGGGGCCTGTTTGGAT+TGG - chr5_1:25199690-25199709 Msa0725480:intron 55.0%
GCATACGATGCCAAGGAAGG+AGG + chr5_1:25200724-25200743 None:intergenic 55.0%
GGCATCGTATGCATACGTGC+AGG - chr5_1:25200732-25200751 Msa0725480:intron 55.0%
TCTTCAGGAATAGGGCGAGG+TGG + chr5_1:25201398-25201417 None:intergenic 55.0%
CGAGGATCACGCAAGTCCAA+GGG + chr5_1:25201631-25201650 None:intergenic 55.0%
TCGAGGATCACGCAAGTCCA+AGG + chr5_1:25201632-25201651 None:intergenic 55.0%
CTACACTTCGCCATAGCACC+AGG - chr5_1:25202579-25202598 Msa0725480:exon 55.0%
TGCTGTACTGTAGGTCCTGG+AGG + chr5_1:25202606-25202625 None:intergenic 55.0%
TCCAGGACCTACAGTACAGC+AGG - chr5_1:25202605-25202624 Msa0725480:intron 55.0%
TCCTGCTGTACTGTAGGTCC+TGG + chr5_1:25202609-25202628 None:intergenic 55.0%
ACATGCAGATTTACCGCCGC+TGG + chr5_1:25202758-25202777 None:intergenic 55.0%
! TGGTGGGCAGGTTGTTGGTC+AGG + chr5_1:25199301-25199320 None:intergenic 60.0%
!! GAAGGTGGTGGGCAGGTTGT+TGG + chr5_1:25199306-25199325 None:intergenic 60.0%
GGCGATGGGGAATGATCGGA+AGG + chr5_1:25199328-25199347 None:intergenic 60.0%
!! AGATGATCCAGCATCGGCGG+TGG + chr5_1:25199359-25199378 None:intergenic 60.0%
ACCGCCGATGCTGGATCATC+TGG - chr5_1:25199358-25199377 Msa0725480:intron 60.0%
! GGTGGATCGTGATGGCGATG+AGG - chr5_1:25199393-25199412 Msa0725480:intron 60.0%
! GGATCGTGATGGCGATGAGG+AGG - chr5_1:25199396-25199415 Msa0725480:intron 60.0%
GGAGGAGCCACTGATCCAGA+TGG - chr5_1:25199414-25199433 Msa0725480:intron 60.0%
GAGACTCCCTGTGCCTGTAG+CGG - chr5_1:25199481-25199500 Msa0725480:intron 60.0%
GAGACTACCGCTACAGGCAC+AGG + chr5_1:25199491-25199510 None:intergenic 60.0%
! CCTCAGGCCGAAGGTGTATC+CGG + chr5_1:25200116-25200135 None:intergenic 60.0%
ACACTGACACCTCAGGCCGA+AGG + chr5_1:25200125-25200144 None:intergenic 60.0%
AGGAATAGGGCGAGGTGGTG+GGG + chr5_1:25201393-25201412 None:intergenic 60.0%
CAGGAATAGGGCGAGGTGGT+GGG + chr5_1:25201394-25201413 None:intergenic 60.0%
TCAGGAATAGGGCGAGGTGG+TGG + chr5_1:25201395-25201414 None:intergenic 60.0%
! TCCTGGAGGTCCTGGTGCTA+TGG + chr5_1:25202592-25202611 None:intergenic 60.0%
ACTGTAGGTCCTGGAGGTCC+TGG + chr5_1:25202600-25202619 None:intergenic 60.0%
!! TCGGAAGGAAGGTGGTGGGC+AGG + chr5_1:25199313-25199332 None:intergenic 65.0%
GGTGGTCGGAGATGGCGATG+GGG + chr5_1:25199341-25199360 None:intergenic 65.0%
CGGTGGTCGGAGATGGCGAT+GGG + chr5_1:25199342-25199361 None:intergenic 65.0%
!! GATCCAGCATCGGCGGTGGT+CGG + chr5_1:25199355-25199374 None:intergenic 65.0%
!! ATCTGGATCTGGCTCGGCGG+TGG - chr5_1:25199375-25199394 Msa0725480:intron 65.0%
CCGGATACACCTTCGGCCTG+AGG - chr5_1:25200113-25200132 Msa0725480:CDS 65.0%
GCCATAGCACCAGGACCTCC+AGG - chr5_1:25202588-25202607 Msa0725480:exon 65.0%
GCGGTGGTCGGAGATGGCGA+TGG + chr5_1:25199343-25199362 None:intergenic 70.0%
! GCATCGGCGGTGGTCGGAGA+TGG + chr5_1:25199349-25199368 None:intergenic 70.0%
TCTCCGACCACCGCCGATGC+TGG - chr5_1:25199349-25199368 Msa0725480:intron 70.0%
GGCTCGGCGGTGGATCGTGA+TGG - chr5_1:25199385-25199404 Msa0725480:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 25198834 25203005 25198834 ID=Msa0725480;Name=Msa0725480
chr5_1 mRNA 25198834 25203005 25198834 ID=Msa0725480-mRNA-1;Parent=Msa0725480;Name=Msa0725480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=328|1|1|1|0.85|0.75|8|367|286
chr5_1 exon 25198834 25199323 25198834 ID=Msa0725480-mRNA-1:exon:9155;Parent=Msa0725480-mRNA-1
chr5_1 exon 25199506 25199595 25199506 ID=Msa0725480-mRNA-1:exon:9154;Parent=Msa0725480-mRNA-1
chr5_1 exon 25199697 25199780 25199697 ID=Msa0725480-mRNA-1:exon:9153;Parent=Msa0725480-mRNA-1
chr5_1 exon 25200080 25200236 25200080 ID=Msa0725480-mRNA-1:exon:9152;Parent=Msa0725480-mRNA-1
chr5_1 exon 25200404 25200471 25200404 ID=Msa0725480-mRNA-1:exon:9151;Parent=Msa0725480-mRNA-1
chr5_1 exon 25201243 25201314 25201243 ID=Msa0725480-mRNA-1:exon:9150;Parent=Msa0725480-mRNA-1
chr5_1 exon 25202326 25202618 25202326 ID=Msa0725480-mRNA-1:exon:9149;Parent=Msa0725480-mRNA-1
chr5_1 exon 25202704 25203005 25202704 ID=Msa0725480-mRNA-1:exon:9148;Parent=Msa0725480-mRNA-1
chr5_1 five_prime_UTR 25202704 25203005 25202704 ID=Msa0725480-mRNA-1:five_prime_utr;Parent=Msa0725480-mRNA-1
chr5_1 five_prime_UTR 25202593 25202618 25202593 ID=Msa0725480-mRNA-1:five_prime_utr;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25202326 25202592 25202326 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25201243 25201314 25201243 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25200404 25200471 25200404 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25200080 25200236 25200080 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25199697 25199780 25199697 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25199506 25199595 25199506 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 CDS 25199201 25199323 25199201 ID=Msa0725480-mRNA-1:cds;Parent=Msa0725480-mRNA-1
chr5_1 three_prime_UTR 25198834 25199200 25198834 ID=Msa0725480-mRNA-1:three_prime_utr;Parent=Msa0725480-mRNA-1
Gene Sequence

>Msa0725480

ATGAGCGATCACTTGGTAGTCATCGTTGACCAACTCGACCACCCAGTTGTTCCTGACCAACAACCTGCCCACCACCTTCCTTCCGATCATTCCCCATCGCCATCTCCGACCACCGCCGATGCTGGATCATCTGGATCTGGCTCGGCGGTGGATCGTGATGGCGATGAGGAGGAGCCACTGATCCAGATGGTTGAGTGCCGTATCTGTCAGGAGGAAGACAGTGTTTCCAATTTGGAGACTCCCTGTGCCTGTAGCGGTAGTCTCAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAATCTGGGTATACTGCCCCACCACCTCGCCCTATTCCTGAAGAAACCACTATTGAAATAGGAGGAGGCTGGACATTATCTGGCTCACCCTTGGACTTGCGTGATCCTCGACTTTTGGCGATTGCAGAGGCAGAACGTCAATTCCTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCTAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTTTTGCGGCATGCACTCTCTGTAACAGATGGTGATTCTTCTGATGATGATCCATCCAATTTTTTCTCCCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGCCGACAAAGACAAGAGGCAGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTAAATTCTGGGCAGCGTAGAGGTCTACACTTCGCCATAGCACCAGGACCTCCAGGACCTACAGTACAGCAGGAACAAGTGTAG

Protein sequence

>Msa0725480

MSDHLVVIVDQLDHPVVPDQQPAHHLPSDHSPSPSPTTADAGSSGSGSAVDRDGDEEEPLIQMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRPIPEETTIEIGGGWTLSGSPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLNSGQRRGLHFAIAPGPPGPTVQQEQV*