Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445430 | sp|P42044|HEMH_CUCSA | 67.284 | 486 | 122 | 6 | 17 | 495 | 33 | 488 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445430 | G7J7L6 | 92.555 | 497 | 11 | 3 | 1 | 497 | 1 | 471 | 0.0 | 933 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029020 | Msa1445430 | 0.820253 | 7.564408e-53 | -8.615850e-47 |
| Msa0076650 | Msa1445430 | 0.804991 | 1.656122e-49 | -8.615850e-47 |
| Msa1371080 | Msa1445430 | 0.814049 | 1.877910e-51 | -8.615850e-47 |
| Msa1417840 | Msa1445430 | 0.983483 | 7.226397e-158 | -8.615850e-47 |
| Msa0659800 | Msa1445430 | 0.811724 | 6.067832e-51 | -8.615850e-47 |
| Msa0694690 | Msa1445430 | 0.804529 | 2.068316e-49 | -8.615850e-47 |
| Msa0725480 | Msa1445430 | 0.818458 | 1.939689e-52 | -8.615850e-47 |
| Msa0766100 | Msa1445430 | 0.817759 | 2.791310e-52 | -8.615850e-47 |
| Msa0198170 | Msa1445430 | 0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa0381630 | Msa1445430 | 0.981604 | 5.371737e-153 | -8.615850e-47 |
| Msa0428510 | Msa1445430 | 0.804068 | 2.580012e-49 | -8.615850e-47 |
| Msa0535020 | Msa1445430 | -0.804274 | 2.336588e-49 | -8.615850e-47 |
| Msa0535050 | Msa1445430 | -0.806369 | 8.506764e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445430 | MtrunA17_Chr3g0135611 | 92.555 | 497 | 11 | 3 | 1 | 497 | 1 | 471 | 0.0 | 933 |
| Msa1445430 | MtrunA17_Chr4g0008821 | 84.476 | 496 | 43 | 3 | 2 | 497 | 13 | 474 | 0.0 | 814 |
| Msa1445430 | MtrunA17_Chr3g0131031 | 58.758 | 451 | 155 | 4 | 4 | 451 | 22 | 444 | 0.0 | 520 |
| Msa1445430 | MtrunA17_Chr8g0385271 | 58.239 | 443 | 155 | 3 | 10 | 451 | 31 | 444 | 2.16e-180 | 516 |
| Msa1445430 | MtrunA17_Chr7g0235891 | 61.538 | 52 | 20 | 0 | 400 | 451 | 88 | 139 | 1.72e-13 | 67.8 |
| Msa1445430 | MtrunA17_Chr4g0045871 | 64.444 | 45 | 14 | 1 | 414 | 456 | 5 | 49 | 7.71e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445430 | AT5G26030.1 | 64.644 | 478 | 134 | 7 | 21 | 494 | 19 | 465 | 0.0 | 611 |
| Msa1445430 | AT5G26030.2 | 64.644 | 478 | 134 | 7 | 21 | 494 | 19 | 465 | 0.0 | 611 |
| Msa1445430 | AT2G30390.1 | 66.384 | 354 | 96 | 1 | 98 | 451 | 100 | 430 | 2.25e-172 | 495 |
| Msa1445430 | AT2G30390.2 | 64.560 | 364 | 96 | 2 | 98 | 451 | 100 | 440 | 6.66e-169 | 487 |
Find 145 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGACTCTTCACACCTTTC+TGG | 0.158781 | tig0031099:+34955 | None:intergenic |
| CCTGAACGCAGTTATCATTT+TGG | 0.188485 | tig0031099:+34548 | None:intergenic |
| GCATATGCTTCCTTGGATTT+AGG | 0.213761 | tig0031099:+36626 | None:intergenic |
| TGAGCACGCTCTTGCTTATC+AGG | 0.255136 | tig0031099:-35198 | Msa1445430:CDS |
| GAACATATTCGTTCGTGATT+TGG | 0.259393 | tig0031099:-38600 | Msa1445430:five_prime_UTR |
| AGATGTTATTAAAAGGAAAA+TGG | 0.299797 | tig0031099:+38526 | None:intergenic |
| ATCTTGGCGAAGTATTTAAC+TGG | 0.311532 | tig0031099:+34612 | None:intergenic |
| ACTAGGACTTCATCTGTATA+TGG | 0.311851 | tig0031099:+34987 | None:intergenic |
| TGAGCGAGAAACTAAGTTTC+TGG | 0.314149 | tig0031099:+37971 | None:intergenic |
| TGGGTCAAGCATCAGTGTTC+TGG | 0.320253 | tig0031099:-35847 | Msa1445430:CDS |
| TTGAATCTGGCATCAAGAAT+TGG | 0.321498 | tig0031099:-34764 | Msa1445430:CDS |
| TTGATACCAAGAGTTTATAA+TGG | 0.330575 | tig0031099:+35666 | None:intergenic |
| ACATCTATGAAATCAAATTC+AGG | 0.348405 | tig0031099:+34500 | None:intergenic |
| AGTACAAGTGGTAAACTGTT+TGG | 0.352485 | tig0031099:+34318 | None:intergenic |
| TGGGCACGTGTCCCGGCTCT+TGG | 0.364586 | tig0031099:-34744 | Msa1445430:CDS |
| TCTGGTGCCAATTCTTGTAT+TGG | 0.377066 | tig0031099:+37989 | None:intergenic |
| ATCAAAGAGAAGGTTATATT+AGG | 0.378881 | tig0031099:-35648 | Msa1445430:CDS |
| GGCTCGACCAATACAAGAAT+TGG | 0.380637 | tig0031099:-37996 | Msa1445430:CDS |
| TACCAGCACCTCTGAAGATA+TGG | 0.387408 | tig0031099:-34643 | Msa1445430:CDS |
| GCAACACACCAACTTTATCT+TGG | 0.387419 | tig0031099:+37883 | None:intergenic |
| TTCGGCTCCCAAGATTGTTT+CGG | 0.387788 | tig0031099:-36694 | Msa1445430:CDS |
| AGGGAATTGGCTCTTGAATC+TGG | 0.388268 | tig0031099:-34777 | Msa1445430:CDS |
| CAGTAGTGGATATAGAAAAC+TGG | 0.391052 | tig0031099:+35868 | None:intergenic |
| AAGGAAGCATATGCTTCTAT+TGG | 0.393699 | tig0031099:-36617 | Msa1445430:CDS |
| GATTTGAGCTTGAGCAGAGC+TGG | 0.405773 | tig0031099:-35134 | Msa1445430:CDS |
| GTACAAGTGGTAAACTGTTT+GGG | 0.408812 | tig0031099:+34319 | None:intergenic |
| AATAGAAGCATATGCTTCCT+TGG | 0.409366 | tig0031099:+36619 | None:intergenic |
| TGGAGAAACCGAAACAATCT+TGG | 0.415074 | tig0031099:+36686 | None:intergenic |
| CAAGAGTTTATAATGGAAAC+AGG | 0.416911 | tig0031099:+35673 | None:intergenic |
| TGAATCTGGCATCAAGAATT+GGG | 0.420289 | tig0031099:-34763 | Msa1445430:CDS |
| TGCAGGCACTTGCACTTAAG+AGG | 0.422306 | tig0031099:-36201 | Msa1445430:intron |
| TGAACATCGTCCAGCGTCTC+TGG | 0.424583 | tig0031099:+37843 | None:intergenic |
| CCAAAATGATAACTGCGTTC+AGG | 0.426212 | tig0031099:-34548 | Msa1445430:CDS |
| TTGAAAATCTGCGGCGATGA+AGG | 0.429694 | tig0031099:+38386 | None:intergenic |
| TGACATGGAGTACAGGGAAT+TGG | 0.432816 | tig0031099:-34790 | Msa1445430:CDS |
| GTGTTCTGGAGCAAACGTTC+AGG | 0.435038 | tig0031099:-35833 | Msa1445430:intron |
| CTGTTTCCATTATAAACTCT+TGG | 0.436093 | tig0031099:-35672 | Msa1445430:CDS |
| TCTATGTTGGGATGCGGTAC+TGG | 0.440002 | tig0031099:-36147 | Msa1445430:CDS |
| ATCCATATCTTCAGAGGTGC+TGG | 0.440328 | tig0031099:+34641 | None:intergenic |
| CTCTCTTCAAATATCTATGT+TGG | 0.442020 | tig0031099:-36160 | Msa1445430:CDS |
| CAAGAATTGGGCACGTGTCC+CGG | 0.442821 | tig0031099:-34751 | Msa1445430:CDS |
| GTCAGTTATGTTGAGAATGC+TGG | 0.450633 | tig0031099:-35296 | Msa1445430:CDS |
| ACTTGCACTTAAGAGGGCTT+TGG | 0.451923 | tig0031099:-36194 | Msa1445430:CDS |
| GAGTGCGTTCATAACTGAAA+TGG | 0.452304 | tig0031099:+38447 | None:intergenic |
| TCTCACCCCTTCCTTCATCA+TGG | 0.453039 | tig0031099:-34721 | Msa1445430:CDS |
| CAACACACCAACTTTATCTT+GGG | 0.457672 | tig0031099:+37884 | None:intergenic |
| AAGAAATTGACATGGAGTAC+AGG | 0.459008 | tig0031099:-34797 | Msa1445430:CDS |
| TATGGTTTCAACCACTGTAC+AGG | 0.463537 | tig0031099:+35005 | None:intergenic |
| TCTCTTCAAATATCTATGTT+GGG | 0.463786 | tig0031099:-36159 | Msa1445430:CDS |
| TGAATTGCTTCTTCAGTGAA+TGG | 0.469168 | tig0031099:+36121 | None:intergenic |
| GGGAAGATGCTTATTTGTCT+AGG | 0.470752 | tig0031099:-35699 | Msa1445430:CDS |
| AAGGGGTGAGACCAAGAGCC+GGG | 0.475278 | tig0031099:+34733 | None:intergenic |
| GCATTTATTGCTGCTGCTGA+TGG | 0.484929 | tig0031099:+34669 | None:intergenic |
| TATTGATATAGGATATCATT+CGG | 0.487615 | tig0031099:-36712 | Msa1445430:intron |
| ATTCTTGTATTGGTCGAGCC+AGG | 0.487791 | tig0031099:+37999 | None:intergenic |
| AGAGTTGGTCGGCGTGGGTG+AGG | 0.491302 | tig0031099:+38494 | None:intergenic |
| TATCTTCAGAGGTGCTGGTA+GGG | 0.493651 | tig0031099:+34646 | None:intergenic |
| GGATCCATACCGAGATCAAA+TGG | 0.499443 | tig0031099:-35273 | Msa1445430:CDS |
| CTGCGGCGATGAAGGGATTG+AGG | 0.499797 | tig0031099:+38394 | None:intergenic |
| AGAATAAAACTCACCTCCCT+TGG | 0.499931 | tig0031099:+35580 | None:intergenic |
| CTCAAGCTCAAATCAGAAGA+TGG | 0.505920 | tig0031099:+35143 | None:intergenic |
| TTGTAACAAGTCTACATCTC+AGG | 0.507679 | tig0031099:-38039 | Msa1445430:CDS |
| AGAAGGTTATATTAGGTCAA+TGG | 0.510506 | tig0031099:-35641 | Msa1445430:CDS |
| GAAGGGGTGAGACCAAGAGC+CGG | 0.510828 | tig0031099:+34732 | None:intergenic |
| CTTTCTGGCCAAGCTCAACT+AGG | 0.513801 | tig0031099:+34970 | None:intergenic |
| GAAGCATATGCTTCTATTGG+AGG | 0.515453 | tig0031099:-36614 | Msa1445430:CDS |
| TCCTCCATTTGATCTCGGTA+TGG | 0.518447 | tig0031099:+35269 | None:intergenic |
| GGAGAAACCGAAACAATCTT+GGG | 0.521215 | tig0031099:+36687 | None:intergenic |
| TACCCGTGTTACTTGCTACT+CGG | 0.521616 | tig0031099:-38063 | Msa1445430:CDS |
| CAAAACTGATATCTACGCTC+CGG | 0.521810 | tig0031099:-36652 | Msa1445430:CDS |
| ATCTTCAGAGGTGCTGGTAG+GGG | 0.525267 | tig0031099:+34647 | None:intergenic |
| AGGGATTGAGGGTATCGGTT+GGG | 0.525449 | tig0031099:+38406 | None:intergenic |
| CGTATGTATTATATCTGTAA+AGG | 0.526845 | tig0031099:+34424 | None:intergenic |
| ATAGAAAACTGGGGATAAAG+AGG | 0.527953 | tig0031099:+35879 | None:intergenic |
| TTGGAAAGAGTTGGTCGGCG+TGG | 0.532518 | tig0031099:+38488 | None:intergenic |
| TCAGTTATGTTGAGAATGCT+GGG | 0.533403 | tig0031099:-35295 | Msa1445430:CDS |
| TAAGAGGGCTTTGGAAGCAA+AGG | 0.534948 | tig0031099:-36185 | Msa1445430:CDS |
| GTTATTAAAAGGAAAATGGT+TGG | 0.536432 | tig0031099:+38530 | None:intergenic |
| TGAAAATCTGCGGCGATGAA+GGG | 0.539351 | tig0031099:+38387 | None:intergenic |
| GTCTTTATCCATATCTTCAG+AGG | 0.540172 | tig0031099:+34635 | None:intergenic |
| GTTGTATAGATTAGTACAAG+TGG | 0.541939 | tig0031099:+34306 | None:intergenic |
| AAAACTGATATCTACGCTCC+GGG | 0.542299 | tig0031099:-36651 | Msa1445430:CDS |
| AAGAGGGCTTTGGAAGCAAA+GGG | 0.543258 | tig0031099:-36184 | Msa1445430:CDS |
| GGTGTGTTGCTTCTCAACCT+AGG | 0.543801 | tig0031099:-37870 | Msa1445430:CDS |
| TCTGTAAAGGAGTAAAACCC+AGG | 0.545654 | tig0031099:+34437 | None:intergenic |
| AGTAAGCTGCTCATTATAAG+TGG | 0.545992 | tig0031099:+37929 | None:intergenic |
| CTAGTTGAGCTTGGCCAGAA+AGG | 0.546122 | tig0031099:-34969 | Msa1445430:CDS |
| TGCGGCGATGAAGGGATTGA+GGG | 0.547203 | tig0031099:+38395 | None:intergenic |
| GAATTGCTTCTTCAGTGAAT+GGG | 0.548173 | tig0031099:+36122 | None:intergenic |
| GCAAGATCCATGATGAAGGA+AGG | 0.554278 | tig0031099:+34714 | None:intergenic |
| TGGAAAGAGTTGGTCGGCGT+GGG | 0.554554 | tig0031099:+38489 | None:intergenic |
| AACTCTTGGTATCAAAGAGA+AGG | 0.555055 | tig0031099:-35658 | Msa1445430:CDS |
| TGCACTCCTCCATTTGATCT+CGG | 0.555763 | tig0031099:+35264 | None:intergenic |
| AGTAGTGGATATAGAAAACT+GGG | 0.558376 | tig0031099:+35869 | None:intergenic |
| GTGTGATAGATTAAGAAGGA+TGG | 0.561861 | tig0031099:-35924 | Msa1445430:intron |
| ATCTGCAAGATCCATGATGA+AGG | 0.564670 | tig0031099:+34710 | None:intergenic |
| TTATCTTGGGCAGCGTGAGT+AGG | 0.565197 | tig0031099:+37897 | None:intergenic |
| CAAGATCCATGATGAAGGAA+GGG | 0.567383 | tig0031099:+34715 | None:intergenic |
| AAGGGATTGAGGGTATCGGT+TGG | 0.567491 | tig0031099:+38405 | None:intergenic |
| GATGAAGTCCTAGTTGAGCT+TGG | 0.570100 | tig0031099:-34978 | Msa1445430:CDS |
| CAAATATCTATGTTGGGATG+CGG | 0.570330 | tig0031099:-36153 | Msa1445430:CDS |
| CTTCCTTGGATTTAGGAGCC+CGG | 0.570429 | tig0031099:+36633 | None:intergenic |
| GCAGGCACTTGCACTTAAGA+GGG | 0.572079 | tig0031099:-36200 | Msa1445430:intron |
| GCGAAAAGATTAAAGAGGAA+AGG | 0.572094 | tig0031099:+37819 | None:intergenic |
| GCATATGCTTCTATTGGAGG+TGG | 0.572738 | tig0031099:-36611 | Msa1445430:CDS |
| CCTAGGTGGACCAGAGACGC+TGG | 0.572902 | tig0031099:-37853 | Msa1445430:CDS |
| CTAATGATAGTGTACCTCAC+TGG | 0.572939 | tig0031099:+34924 | None:intergenic |
| CCAGCGTCTCTGGTCCACCT+AGG | 0.573383 | tig0031099:+37853 | None:intergenic |
| CACGCTGCCCAAGATAAAGT+TGG | 0.577159 | tig0031099:-37891 | Msa1445430:CDS |
| AGAAATTGACATGGAGTACA+GGG | 0.578767 | tig0031099:-34796 | Msa1445430:CDS |
| CATCATGGATCTTGCAGATG+CGG | 0.579000 | tig0031099:-34706 | Msa1445430:CDS |
| GTGCATCTTCTTGATCATGC+AGG | 0.580701 | tig0031099:-35246 | Msa1445430:CDS |
| ATATCTTCAGAGGTGCTGGT+AGG | 0.580852 | tig0031099:+34645 | None:intergenic |
| AAGATCCATGATGAAGGAAG+GGG | 0.588954 | tig0031099:+34716 | None:intergenic |
| GCATTCTCAACATAACTGAC+AGG | 0.591932 | tig0031099:+35299 | None:intergenic |
| TCTTGTGTGATAGATTAAGA+AGG | 0.597670 | tig0031099:-35928 | Msa1445430:intron |
| ATGCAGGAATTGAAAGCTAG+AGG | 0.599634 | tig0031099:-35230 | Msa1445430:CDS |
| CAACATAGATATTTGAAGAG+AGG | 0.602336 | tig0031099:+36161 | None:intergenic |
| GACTCTTGAAGAAATTGACA+TGG | 0.603916 | tig0031099:-34805 | Msa1445430:CDS |
| ACGACGACGTTGGAAAGAGT+TGG | 0.607940 | tig0031099:+38479 | None:intergenic |
| ACTGATGCTTGACCCAGTAG+TGG | 0.613715 | tig0031099:+35854 | None:intergenic |
| GTCGAGTGGGCCCTGTACAG+TGG | 0.613972 | tig0031099:-35016 | Msa1445430:CDS |
| GCTCCGGGCTCCTAAATCCA+AGG | 0.618946 | tig0031099:-36636 | Msa1445430:CDS |
| ACGCAAAATTACAGATGACC+AGG | 0.621225 | tig0031099:-36579 | Msa1445430:intron |
| ATGGATTGCCAGAGTCGAGT+GGG | 0.621399 | tig0031099:-35029 | Msa1445430:intron |
| ATGGTTTCAACCACTGTACA+GGG | 0.624392 | tig0031099:+35006 | None:intergenic |
| GATCTGCGAAAAGATTAAAG+AGG | 0.632933 | tig0031099:+37814 | None:intergenic |
| CATAACTGACAGGAACACCA+TGG | 0.639549 | tig0031099:+35309 | None:intergenic |
| GATGGATTGCCAGAGTCGAG+TGG | 0.639812 | tig0031099:-35030 | Msa1445430:intron |
| CTGTAAAGGAGTAAAACCCA+GGG | 0.640643 | tig0031099:+34438 | None:intergenic |
| GTTGGCGTGTACGTCAAAGA+TGG | 0.646233 | tig0031099:+38548 | None:intergenic |
| TCTTGGCGAAGTATTTAACT+GGG | 0.647791 | tig0031099:+34613 | None:intergenic |
| ATAACTGACAGGAACACCAT+GGG | 0.647820 | tig0031099:+35310 | None:intergenic |
| GATGAAGGGATTGAGGGTAT+CGG | 0.652118 | tig0031099:+38401 | None:intergenic |
| GTGTTGCTTCTCAACCTAGG+TGG | 0.663732 | tig0031099:-37867 | Msa1445430:CDS |
| TCTATGAAATCAAATTCAGG+TGG | 0.664584 | tig0031099:+34503 | None:intergenic |
| GGATGGAATAACAAGGCTCG+TGG | 0.666352 | tig0031099:-35907 | Msa1445430:CDS |
| CGACGTTGGAAAGAGTTGGT+CGG | 0.676199 | tig0031099:+38483 | None:intergenic |
| ATCCGAGTAGCAAGTAACAC+GGG | 0.692447 | tig0031099:+38061 | None:intergenic |
| ATGCTTACATTGAAAATCTG+CGG | 0.701447 | tig0031099:+38377 | None:intergenic |
| AATCCGAGTAGCAAGTAACA+CGG | 0.705787 | tig0031099:+38060 | None:intergenic |
| TTAAGAAGGATGGAATAACA+AGG | 0.706239 | tig0031099:-35914 | Msa1445430:CDS |
| CAGTTATGTTGAGAATGCTG+GGG | 0.717752 | tig0031099:-35294 | Msa1445430:CDS |
| TCCATACCGAGATCAAATGG+AGG | 0.721527 | tig0031099:-35270 | Msa1445430:CDS |
| GTAGTGGATATAGAAAACTG+GGG | 0.817706 | tig0031099:+35870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+TGG | + | tig0031099:35592-35611 | None:intergenic | 0.0% |
| !!! | ATATTTTACATATATTAGAA+TGG | + | tig0031099:34767-34786 | None:intergenic | 10.0% |
| !! | TCTAATATATGTAAAATATT+TGG | - | tig0031099:34768-34787 | Msa1445430:CDS | 10.0% |
| !!! | ATTTATTGTATTTTATTGAT+TGG | - | tig0031099:36011-36030 | Msa1445430:intron | 10.0% |
| !!! | CTGATAATTATTTTTAAAAA+TGG | + | tig0031099:36485-36504 | None:intergenic | 10.0% |
| !!! | TTTATTTTATAGAAAATAAC+AGG | + | tig0031099:36610-36629 | None:intergenic | 10.0% |
| !! | AAAAATAGAAAGAAAAAAAT+TGG | + | tig0031099:37546-37565 | None:intergenic | 10.0% |
| !! | AGAAAAGTAAAAATGAAATA+GGG | + | tig0031099:34606-34625 | None:intergenic | 15.0% |
| !! | AAGAAAAGTAAAAATGAAAT+AGG | + | tig0031099:34607-34626 | None:intergenic | 15.0% |
| !! | TTGAAAATTGTTAAAAATTC+TGG | - | tig0031099:35772-35791 | Msa1445430:intron | 15.0% |
| !! | ACATTTGATATAAAATGTAT+AGG | + | tig0031099:36813-36832 | None:intergenic | 15.0% |
| !! | GTATCAATAACTTAAATAAA+TGG | + | tig0031099:36871-36890 | None:intergenic | 15.0% |
| !!! | TTTATTTAAGTTATTGATAC+AGG | - | tig0031099:36871-36890 | Msa1445430:intron | 15.0% |
| !!! | ACTGATATTATTTAATTTTC+AGG | - | tig0031099:37178-37197 | Msa1445430:intron | 15.0% |
| !!! | CTGATATTATTTAATTTTCA+GGG | - | tig0031099:37179-37198 | Msa1445430:intron | 15.0% |
| !!! | TTTTTTTCTTTCTATTTTTC+AGG | - | tig0031099:37547-37566 | Msa1445430:intron | 15.0% |
| !!! | TGGTATTGACTTTTTTATTT+TGG | - | tig0031099:34318-34337 | Msa1445430:three_prime_UTR | 20.0% |
| !! | AGATGTTATTAAAAGGAAAA+TGG | + | tig0031099:34375-34394 | None:intergenic | 20.0% |
| !!! | TCATTTTTATGCTAATTGTT+TGG | - | tig0031099:35161-35180 | Msa1445430:CDS | 20.0% |
| !!! | TGTTTACTTAAATTGTTTTC+CGG | + | tig0031099:35397-35416 | None:intergenic | 20.0% |
| !!! | ATATTGTATAATGGAATACA+TGG | - | tig0031099:35848-35867 | Msa1445430:CDS | 20.0% |
| !! | TATTGATATAGGATATCATT+CGG | - | tig0031099:36186-36205 | Msa1445430:CDS | 20.0% |
| !!! | AATGGAAATAACATCTTTTA+TGG | - | tig0031099:36661-36680 | Msa1445430:CDS | 20.0% |
| !!! | ATGGAAATAACATCTTTTAT+GGG | - | tig0031099:36662-36681 | Msa1445430:CDS | 20.0% |
| !! | TAACAATAAACCCAAATTTA+AGG | + | tig0031099:36942-36961 | None:intergenic | 20.0% |
| ! | GTTATTAAAAGGAAAATGGT+TGG | + | tig0031099:34371-34390 | None:intergenic | 25.0% |
| ! | AGTAAAAATGAAATAGGGTT+TGG | + | tig0031099:34601-34620 | None:intergenic | 25.0% |
| ! | TGAGATTTATTGAGAGAATT+TGG | + | tig0031099:34634-34653 | None:intergenic | 25.0% |
| ! | AATTCTCTCAATAAATCTCA+TGG | - | tig0031099:34634-34653 | Msa1445430:CDS | 25.0% |
| ! | TGCAAAAAAAAGTAACATAC+AGG | + | tig0031099:35109-35128 | None:intergenic | 25.0% |
| !! | GTTTACTTAAATTGTTTTCC+GGG | + | tig0031099:35396-35415 | None:intergenic | 25.0% |
| !! | TAAATGTCAATCATGAGTTT+TGG | - | tig0031099:35454-35473 | Msa1445430:intron | 25.0% |
| ! | TGAATTATTCAATTCCAAAG+TGG | - | tig0031099:35716-35735 | Msa1445430:intron | 25.0% |
| !! | AATTTTCAATGAAGATTCCA+AGG | + | tig0031099:35761-35780 | None:intergenic | 25.0% |
| ! | ATTATACAATATTCTAGTGC+AGG | + | tig0031099:35840-35859 | None:intergenic | 25.0% |
| ! | TGCACTAGAATATTGTATAA+TGG | - | tig0031099:35839-35858 | Msa1445430:CDS | 25.0% |
| !!! | TTGTATTTTATTGATTGGTG+TGG | - | tig0031099:36016-36035 | Msa1445430:intron | 25.0% |
| !!! | TGTATTTTATTGATTGGTGT+GGG | - | tig0031099:36017-36036 | Msa1445430:intron | 25.0% |
| ! | TCTGTTTATGTTTGATGTAA+TGG | - | tig0031099:36040-36059 | Msa1445430:intron | 25.0% |
| !! | TATGTCTCTTGTATTGATAT+AGG | - | tig0031099:36175-36194 | Msa1445430:CDS | 25.0% |
| ! | GGGGAAAATAAAAATAAGAA+AGG | + | tig0031099:36370-36389 | None:intergenic | 25.0% |
| ! | TTGAATGTAATCATGTATGT+CGG | + | tig0031099:36456-36475 | None:intergenic | 25.0% |
| ! | TCTCTTCAAATATCTATGTT+GGG | - | tig0031099:36739-36758 | Msa1445430:intron | 25.0% |
| !! | CATTTTGTCACCTTAAATTT+GGG | - | tig0031099:36929-36948 | Msa1445430:intron | 25.0% |
| ! | AAATTCTCTAAATCATGCAA+GGG | + | tig0031099:37117-37136 | None:intergenic | 25.0% |
| ! | AAAATTCTCTAAATCATGCA+AGG | + | tig0031099:37118-37137 | None:intergenic | 25.0% |
| ! | TTGATACCAAGAGTTTATAA+TGG | + | tig0031099:37235-37254 | None:intergenic | 25.0% |
| ! | ATCAAAGAGAAGGTTATATT+AGG | - | tig0031099:37250-37269 | Msa1445430:intron | 25.0% |
| ! | AGGTTCAGAAAAAAAATCAT+AGG | + | tig0031099:37457-37476 | None:intergenic | 25.0% |
| ! | TTTGTATTCTTGCTTTCTTT+GGG | - | tig0031099:37813-37832 | Msa1445430:CDS | 25.0% |
| ! | CAATAAAAATGTCAGATACA+GGG | + | tig0031099:37848-37867 | None:intergenic | 25.0% |
| !! | TATCTGACATTTTTATTGGA+TGG | - | tig0031099:37850-37869 | Msa1445430:CDS | 25.0% |
| ! | AATTGAACCAAAAAACATCT+TGG | + | tig0031099:38305-38324 | None:intergenic | 25.0% |
| !!! | GATGTTTTTTGGTTCAATTT+TGG | - | tig0031099:38306-38325 | Msa1445430:intron | 25.0% |
| ! | ACATCTATGAAATCAAATTC+AGG | + | tig0031099:38401-38420 | None:intergenic | 25.0% |
| !!! | TATACTTCATTTTTTTCCCT+GGG | - | tig0031099:38444-38463 | Msa1445430:exon | 25.0% |
| ! | CGTATGTATTATATCTGTAA+AGG | + | tig0031099:38477-38496 | None:intergenic | 25.0% |
| ! | TAAAAACTTGAATGTTAGCT+TGG | - | tig0031099:38535-38554 | Msa1445430:intron | 25.0% |
| GGAAGGAAGATGTTATTAAA+AGG | + | tig0031099:34382-34401 | None:intergenic | 30.0% | |
| ATGCTTACATTGAAAATCTG+CGG | + | tig0031099:34524-34543 | None:intergenic | 30.0% | |
| TAGGGTTTGGAAATAATTGA+AGG | + | tig0031099:34588-34607 | None:intergenic | 30.0% | |
| GAATGGTCAATTGAAAAGAA+GGG | + | tig0031099:34750-34769 | None:intergenic | 30.0% | |
| AGAATGGTCAATTGAAAAGA+AGG | + | tig0031099:34751-34770 | None:intergenic | 30.0% | |
| !!! | ATATTTGGTTTGTGCTTTTC+AGG | - | tig0031099:34783-34802 | Msa1445430:CDS | 30.0% |
| TTTATGCTAATTGTTTGGAG+CGG | - | tig0031099:35166-35185 | Msa1445430:CDS | 30.0% | |
| GTGATCAAATCTCAATAGAT+AGG | + | tig0031099:35242-35261 | None:intergenic | 30.0% | |
| GGACTTAATGACTCTAATAT+TGG | - | tig0031099:35363-35382 | Msa1445430:intron | 30.0% | |
| ATGTTATACAGGAAGGAATA+AGG | - | tig0031099:35669-35688 | Msa1445430:CDS | 30.0% | |
| TGTTATACAGGAAGGAATAA+GGG | - | tig0031099:35670-35689 | Msa1445430:CDS | 30.0% | |
| GTCATGTGATTTCAATTTCT+TGG | - | tig0031099:35904-35923 | Msa1445430:CDS | 30.0% | |
| ATGTGATTTCAATTTCTTGG+TGG | - | tig0031099:35907-35926 | Msa1445430:CDS | 30.0% | |
| TGTGATTTCAATTTCTTGGT+GGG | - | tig0031099:35908-35927 | Msa1445430:CDS | 30.0% | |
| AACTGTTGTATATTGATCAC+TGG | - | tig0031099:36067-36086 | Msa1445430:intron | 30.0% | |
| ACTGTTGTATATTGATCACT+GGG | - | tig0031099:36068-36087 | Msa1445430:intron | 30.0% | |
| ! | GTAGATATCAGTTTTGCTAA+TGG | + | tig0031099:36242-36261 | None:intergenic | 30.0% |
| ! | TCATCTGTAATTTTGCGTAA+AGG | + | tig0031099:36317-36336 | None:intergenic | 30.0% |
| ! | TTTTCCCCTTATATGTTGTT+TGG | - | tig0031099:36382-36401 | Msa1445430:intron | 30.0% |
| ATAGCCAAACAACATATAAG+GGG | + | tig0031099:36389-36408 | None:intergenic | 30.0% | |
| CATAGCCAAACAACATATAA+GGG | + | tig0031099:36390-36409 | None:intergenic | 30.0% | |
| ACATAGCCAAACAACATATA+AGG | + | tig0031099:36391-36410 | None:intergenic | 30.0% | |
| AACAGTGTTACAGTTTAGAA+TGG | - | tig0031099:36643-36662 | Msa1445430:CDS | 30.0% | |
| CAACATAGATATTTGAAGAG+AGG | + | tig0031099:36740-36759 | None:intergenic | 30.0% | |
| CTCTCTTCAAATATCTATGT+TGG | - | tig0031099:36738-36757 | Msa1445430:intron | 30.0% | |
| ! | CCAAATTTAAGGTGACAAAA+TGG | + | tig0031099:36931-36950 | None:intergenic | 30.0% |
| ! | CCATTTTGTCACCTTAAATT+TGG | - | tig0031099:36928-36947 | Msa1445430:intron | 30.0% |
| TCTTGTGTGATAGATTAAGA+AGG | - | tig0031099:36970-36989 | Msa1445430:intron | 30.0% | |
| TTAAGAAGGATGGAATAACA+AGG | - | tig0031099:36984-37003 | Msa1445430:intron | 30.0% | |
| !! | AGTAGTGGATATAGAAAACT+GGG | + | tig0031099:37032-37051 | None:intergenic | 30.0% |
| ! | AGTTTTCTATATCCACTACT+GGG | - | tig0031099:37032-37051 | Msa1445430:intron | 30.0% |
| ! | CAAGAGTTTATAATGGAAAC+AGG | + | tig0031099:37228-37247 | None:intergenic | 30.0% |
| CTGTTTCCATTATAAACTCT+TGG | - | tig0031099:37226-37245 | Msa1445430:intron | 30.0% | |
| AGAAGGTTATATTAGGTCAA+TGG | - | tig0031099:37257-37276 | Msa1445430:intron | 30.0% | |
| AATACGCTTTCCTTAAAACT+CGG | - | tig0031099:37348-37367 | Msa1445430:intron | 30.0% | |
| !!! | TTTTTTCTGAACCTGTTAGT+AGG | - | tig0031099:37463-37482 | Msa1445430:intron | 30.0% |
| ! | TTTTTCTGAACCTGTTAGTA+GGG | - | tig0031099:37464-37483 | Msa1445430:intron | 30.0% |
| AGAAAAAAATTGGTATGCCA+CGG | + | tig0031099:37536-37555 | None:intergenic | 30.0% | |
| !!! | ATGATATTTTTTAGTGCCCA+TGG | - | tig0031099:37572-37591 | Msa1445430:intron | 30.0% |
| TGTACTGTTCAATTAATAGC+TGG | - | tig0031099:37790-37809 | Msa1445430:intron | 30.0% | |
| GTTTGTATTCTTGCTTTCTT+TGG | - | tig0031099:37812-37831 | Msa1445430:CDS | 30.0% | |
| CCAATAAAAATGTCAGATAC+AGG | + | tig0031099:37849-37868 | None:intergenic | 30.0% | |
| ! | CCTGTATCTGACATTTTTAT+TGG | - | tig0031099:37846-37865 | Msa1445430:CDS | 30.0% |
| CAATAAGCTATCGTAGTAAA+AGG | + | tig0031099:38000-38019 | None:intergenic | 30.0% | |
| ! | CTTTTACTACGATAGCTTAT+TGG | - | tig0031099:37998-38017 | Msa1445430:CDS | 30.0% |
| TCTATGAAATCAAATTCAGG+TGG | + | tig0031099:38398-38417 | None:intergenic | 30.0% | |
| !!! | GTATACTTCATTTTTTTCCC+TGG | - | tig0031099:38443-38462 | Msa1445430:exon | 30.0% |
| GTTGTATAGATTAGTACAAG+TGG | + | tig0031099:38595-38614 | None:intergenic | 30.0% | |
| GAACATATTCGTTCGTGATT+TGG | - | tig0031099:34298-34317 | Msa1445430:three_prime_UTR | 35.0% | |
| TTGTAACAAGTCTACATCTC+AGG | - | tig0031099:34859-34878 | Msa1445430:intron | 35.0% | |
| AGTAAGCTGCTCATTATAAG+TGG | + | tig0031099:34972-34991 | None:intergenic | 35.0% | |
| CAACACACCAACTTTATCTT+GGG | + | tig0031099:35017-35036 | None:intergenic | 35.0% | |
| GCGAAAAGATTAAAGAGGAA+AGG | + | tig0031099:35082-35101 | None:intergenic | 35.0% | |
| GATCTGCGAAAAGATTAAAG+AGG | + | tig0031099:35087-35106 | None:intergenic | 35.0% | |
| TAGATAGGCTCCTACTAATT+AGG | + | tig0031099:35227-35246 | None:intergenic | 35.0% | |
| !! | CATCTGGATTCTTAGTTTGT+TGG | - | tig0031099:35284-35303 | Msa1445430:CDS | 35.0% |
| !! | TCTAATATTGGCTTAGATCC+CGG | - | tig0031099:35375-35394 | Msa1445430:intron | 35.0% |
| !! | TGTCAATCATGAGTTTTGGT+AGG | - | tig0031099:35458-35477 | Msa1445430:intron | 35.0% |
| TAAGAATTGCTTCTCATGTG+AGG | - | tig0031099:35516-35535 | Msa1445430:intron | 35.0% | |
| GTTATACAGGAAGGAATAAG+GGG | - | tig0031099:35671-35690 | Msa1445430:CDS | 35.0% | |
| TTATACAGGAAGGAATAAGG+GGG | - | tig0031099:35672-35691 | Msa1445430:CDS | 35.0% | |
| !!! | GGGTTTGCTTGTTTTATATG+TGG | - | tig0031099:35693-35712 | Msa1445430:CDS | 35.0% |
| GAAATGCTAGAGATATGTCT+TGG | - | tig0031099:35794-35813 | Msa1445430:intron | 35.0% | |
| ! | AATAGAAGCATATGCTTCCT+TGG | + | tig0031099:36282-36301 | None:intergenic | 35.0% |
| ! | AAGGAAGCATATGCTTCTAT+TGG | - | tig0031099:36281-36300 | Msa1445430:intron | 35.0% |
| CAAAAAAATTGAACTGCACC+TGG | + | tig0031099:36340-36359 | None:intergenic | 35.0% | |
| TTACGTGTTAGTGTCATATC+TGG | - | tig0031099:36508-36527 | Msa1445430:intron | 35.0% | |
| CTCTTCAAGAGAATACTTTG+TGG | - | tig0031099:36577-36596 | Msa1445430:intron | 35.0% | |
| CAAATATCTATGTTGGGATG+CGG | - | tig0031099:36745-36764 | Msa1445430:intron | 35.0% | |
| GAATTGCTTCTTCAGTGAAT+GGG | + | tig0031099:36779-36798 | None:intergenic | 35.0% | |
| TGAATTGCTTCTTCAGTGAA+TGG | + | tig0031099:36780-36799 | None:intergenic | 35.0% | |
| GTGTGATAGATTAAGAAGGA+TGG | - | tig0031099:36974-36993 | Msa1445430:intron | 35.0% | |
| ATAGAAAACTGGGGATAAAG+AGG | + | tig0031099:37022-37041 | None:intergenic | 35.0% | |
| !! | GTAGTGGATATAGAAAACTG+GGG | + | tig0031099:37031-37050 | None:intergenic | 35.0% |
| !! | CAGTAGTGGATATAGAAAAC+TGG | + | tig0031099:37033-37052 | None:intergenic | 35.0% |
| ! | CAGTTTTCTATATCCACTAC+TGG | - | tig0031099:37031-37050 | Msa1445430:intron | 35.0% |
| AACTCTTGGTATCAAAGAGA+AGG | - | tig0031099:37240-37259 | Msa1445430:intron | 35.0% | |
| TTTCCTTAAAACTCGGTATC+CGG | - | tig0031099:37355-37374 | Msa1445430:intron | 35.0% | |
| ATTCAATACAAGTGGATGGT+GGG | + | tig0031099:37412-37431 | None:intergenic | 35.0% | |
| TATTCAATACAAGTGGATGG+TGG | + | tig0031099:37413-37432 | None:intergenic | 35.0% | |
| ACGTATTCAATACAAGTGGA+TGG | + | tig0031099:37416-37435 | None:intergenic | 35.0% | |
| TCCACTTGTATTGAATACGT+TGG | - | tig0031099:37416-37435 | Msa1445430:intron | 35.0% | |
| TCCAACGTATTCAATACAAG+TGG | + | tig0031099:37420-37439 | None:intergenic | 35.0% | |
| TGTATTGAATACGTTGGACA+TGG | - | tig0031099:37422-37441 | Msa1445430:intron | 35.0% | |
| ! | ATTTTGTAAGCCCTACTAAC+AGG | + | tig0031099:37477-37496 | None:intergenic | 35.0% |
| GTAGGGCTTACAAAATTCAA+AGG | - | tig0031099:37481-37500 | Msa1445430:intron | 35.0% | |
| TCAGTTATGTTGAGAATGCT+GGG | - | tig0031099:37603-37622 | Msa1445430:intron | 35.0% | |
| ACTAGGACTTCATCTGTATA+TGG | + | tig0031099:37914-37933 | None:intergenic | 35.0% | |
| GACTCTTGAAGAAATTGACA+TGG | - | tig0031099:38093-38112 | Msa1445430:CDS | 35.0% | |
| AAGAAATTGACATGGAGTAC+AGG | - | tig0031099:38101-38120 | Msa1445430:intron | 35.0% | |
| AGAAATTGACATGGAGTACA+GGG | - | tig0031099:38102-38121 | Msa1445430:intron | 35.0% | |
| TTGAATCTGGCATCAAGAAT+TGG | - | tig0031099:38134-38153 | Msa1445430:intron | 35.0% | |
| TGAATCTGGCATCAAGAATT+GGG | - | tig0031099:38135-38154 | Msa1445430:intron | 35.0% | |
| GTCTTTATCCATATCTTCAG+AGG | + | tig0031099:38266-38285 | None:intergenic | 35.0% | |
| ! | TCTTGGCGAAGTATTTAACT+GGG | + | tig0031099:38288-38307 | None:intergenic | 35.0% |
| ! | ATCTTGGCGAAGTATTTAAC+TGG | + | tig0031099:38289-38308 | None:intergenic | 35.0% |
| !!! | TACTTCGCCAAGATGTTTTT+TGG | - | tig0031099:38295-38314 | Msa1445430:intron | 35.0% |
| ! | CTGAACGCAGTTATCATTTT+GGG | + | tig0031099:38352-38371 | None:intergenic | 35.0% |
| GTACAAGTGGTAAACTGTTT+GGG | + | tig0031099:38582-38601 | None:intergenic | 35.0% | |
| AGTACAAGTGGTAAACTGTT+TGG | + | tig0031099:38583-38602 | None:intergenic | 35.0% | |
| GAGTGCGTTCATAACTGAAA+TGG | + | tig0031099:34454-34473 | None:intergenic | 40.0% | |
| AATCCGAGTAGCAAGTAACA+CGG | + | tig0031099:34841-34860 | None:intergenic | 40.0% | |
| ! | TCTGGTGCCAATTCTTGTAT+TGG | + | tig0031099:34912-34931 | None:intergenic | 40.0% |
| TGAGCGAGAAACTAAGTTTC+TGG | + | tig0031099:34930-34949 | None:intergenic | 40.0% | |
| GCAACACACCAACTTTATCT+TGG | + | tig0031099:35018-35037 | None:intergenic | 40.0% | |
| AGGCTCCTACTAATTAGGAA+GGG | + | tig0031099:35222-35241 | None:intergenic | 40.0% | |
| TAGGCTCCTACTAATTAGGA+AGG | + | tig0031099:35223-35242 | None:intergenic | 40.0% | |
| TTGAGATTTGATCACTCAGC+TGG | - | tig0031099:35247-35266 | Msa1445430:CDS | 40.0% | |
| TGTGCCTAGATTCCTAATTG+AGG | - | tig0031099:35316-35335 | Msa1445430:CDS | 40.0% | |
| TGAGCCTCAATTAGGAATCT+AGG | + | tig0031099:35323-35342 | None:intergenic | 40.0% | |
| AGATTGTGTGAGCCTCAATT+AGG | + | tig0031099:35331-35350 | None:intergenic | 40.0% | |
| ACACAATCTTGTGTTTGTGC+TGG | - | tig0031099:35342-35361 | Msa1445430:intron | 40.0% | |
| !! | ACAAGAGTGCTGCCATAATT+TGG | - | tig0031099:35414-35433 | Msa1445430:intron | 40.0% |
| CTGCCATAATTTGGTAGGAT+GGG | - | tig0031099:35423-35442 | Msa1445430:intron | 40.0% | |
| AATTGCTTCTCATGTGAGGA+TGG | - | tig0031099:35520-35539 | Msa1445430:intron | 40.0% | |
| ATTGCTTCTCATGTGAGGAT+GGG | - | tig0031099:35521-35540 | Msa1445430:intron | 40.0% | |
| !! | AACTAGTTCTGCAAGATGCT+TGG | - | tig0031099:35549-35568 | Msa1445430:intron | 40.0% |
| !! | ACTAGTTCTGCAAGATGCTT+GGG | - | tig0031099:35550-35569 | Msa1445430:intron | 40.0% |
| GTGTGTGTGTGATGTTATAC+AGG | - | tig0031099:35658-35677 | Msa1445430:CDS | 40.0% | |
| GTGTGTGATGTTATACAGGA+AGG | - | tig0031099:35662-35681 | Msa1445430:CDS | 40.0% | |
| TATACAGGAAGGAATAAGGG+GGG | - | tig0031099:35673-35692 | Msa1445430:CDS | 40.0% | |
| TAGTGTGTTCTACACCACTT+TGG | + | tig0031099:35733-35752 | None:intergenic | 40.0% | |
| AAAGTGGTGTAGAACACACT+AGG | - | tig0031099:35732-35751 | Msa1445430:intron | 40.0% | |
| AGGCAGAATAGCAACAAACT+TGG | + | tig0031099:35820-35839 | None:intergenic | 40.0% | |
| ATGGAATACATGGTTGTGCT+AGG | - | tig0031099:35858-35877 | Msa1445430:CDS | 40.0% | |
| ! | GTGGGTGCTGCAAATTATTT+GGG | - | tig0031099:35926-35945 | Msa1445430:intron | 40.0% |
| !!! | TTGTGACGTTTTGGAGAGAT+TGG | - | tig0031099:35981-36000 | Msa1445430:intron | 40.0% |
| !!! | TGTGACGTTTTGGAGAGATT+GGG | - | tig0031099:35982-36001 | Msa1445430:intron | 40.0% |
| GGAGAAACCGAAACAATCTT+GGG | + | tig0031099:36214-36233 | None:intergenic | 40.0% | |
| TGGAGAAACCGAAACAATCT+TGG | + | tig0031099:36215-36234 | None:intergenic | 40.0% | |
| ! | TCAGTTTTGCTAATGGTTGC+TGG | + | tig0031099:36235-36254 | None:intergenic | 40.0% |
| CAAAACTGATATCTACGCTC+CGG | - | tig0031099:36246-36265 | Msa1445430:intron | 40.0% | |
| AAAACTGATATCTACGCTCC+GGG | - | tig0031099:36247-36266 | Msa1445430:intron | 40.0% | |
| GCATATGCTTCCTTGGATTT+AGG | + | tig0031099:36275-36294 | None:intergenic | 40.0% | |
| GAAGCATATGCTTCTATTGG+AGG | - | tig0031099:36284-36303 | Msa1445430:intron | 40.0% | |
| ACGCAAAATTACAGATGACC+AGG | - | tig0031099:36319-36338 | Msa1445430:intron | 40.0% | |
| CTCTAGATTGAAGACATGTC+CGG | - | tig0031099:36421-36440 | Msa1445430:intron | 40.0% | |
| !! | TGTATGTCGGTGTCAAATAC+CGG | + | tig0031099:36443-36462 | None:intergenic | 40.0% |
| GTTAGTGTCATATCTGGTGT+AGG | - | tig0031099:36514-36533 | Msa1445430:intron | 40.0% | |
| AACGTTCAGGTACTATGTAG+TGG | - | tig0031099:37078-37097 | Msa1445430:intron | 40.0% | |
| !! | CATGCAAGGGTATTCATGAA+GGG | + | tig0031099:37104-37123 | None:intergenic | 40.0% |
| !! | TCATGCAAGGGTATTCATGA+AGG | + | tig0031099:37105-37124 | None:intergenic | 40.0% |
| GGGAAGATGCTTATTTGTCT+AGG | - | tig0031099:37199-37218 | Msa1445430:intron | 40.0% | |
| AGAATAAAACTCACCTCCCT+TGG | + | tig0031099:37321-37340 | None:intergenic | 40.0% | |
| ! | TTTTACTCCAATCTGAACCG+TGG | - | tig0031099:37516-37535 | Msa1445430:intron | 40.0% |
| ATAACTGACAGGAACACCAT+GGG | + | tig0031099:37591-37610 | None:intergenic | 40.0% | |
| GCATTCTCAACATAACTGAC+AGG | + | tig0031099:37602-37621 | None:intergenic | 40.0% | |
| GTCAGTTATGTTGAGAATGC+TGG | - | tig0031099:37602-37621 | Msa1445430:intron | 40.0% | |
| CAGTTATGTTGAGAATGCTG+GGG | - | tig0031099:37604-37623 | Msa1445430:intron | 40.0% | |
| ATGCAGGAATTGAAAGCTAG+AGG | - | tig0031099:37668-37687 | Msa1445430:intron | 40.0% | |
| CTCAAGCTCAAATCAGAAGA+TGG | + | tig0031099:37758-37777 | None:intergenic | 40.0% | |
| ATGGTTTCAACCACTGTACA+GGG | + | tig0031099:37895-37914 | None:intergenic | 40.0% | |
| TATGGTTTCAACCACTGTAC+AGG | + | tig0031099:37896-37915 | None:intergenic | 40.0% | |
| AAAGACTCTTCACACCTTTC+TGG | + | tig0031099:37946-37965 | None:intergenic | 40.0% | |
| ! | CTAATGATAGTGTACCTCAC+TGG | + | tig0031099:37977-37996 | None:intergenic | 40.0% |
| AAGATCCATGATGAAGGAAG+GGG | + | tig0031099:38185-38204 | None:intergenic | 40.0% | |
| CAAGATCCATGATGAAGGAA+GGG | + | tig0031099:38186-38205 | None:intergenic | 40.0% | |
| ATCTGCAAGATCCATGATGA+AGG | + | tig0031099:38191-38210 | None:intergenic | 40.0% | |
| ! | CCTGAACGCAGTTATCATTT+TGG | + | tig0031099:38353-38372 | None:intergenic | 40.0% |
| CCAAAATGATAACTGCGTTC+AGG | - | tig0031099:38350-38369 | Msa1445430:intron | 40.0% | |
| CTGTAAAGGAGTAAAACCCA+GGG | + | tig0031099:38463-38482 | None:intergenic | 40.0% | |
| TCTGTAAAGGAGTAAAACCC+AGG | + | tig0031099:38464-38483 | None:intergenic | 40.0% | |
| ! | GATGAAGGGATTGAGGGTAT+CGG | + | tig0031099:34500-34519 | None:intergenic | 45.0% |
| TGAAAATCTGCGGCGATGAA+GGG | + | tig0031099:34514-34533 | None:intergenic | 45.0% | |
| TTGAAAATCTGCGGCGATGA+AGG | + | tig0031099:34515-34534 | None:intergenic | 45.0% | |
| ! | GTTTGTTGAATTGCTGCTGC+TGG | + | tig0031099:34728-34747 | None:intergenic | 45.0% |
| !! | TACCCGTGTTACTTGCTACT+CGG | - | tig0031099:34835-34854 | Msa1445430:intron | 45.0% |
| ATCCGAGTAGCAAGTAACAC+GGG | + | tig0031099:34840-34859 | None:intergenic | 45.0% | |
| !!! | GCATCCTTGTTTTTGTGTCC+TGG | - | tig0031099:34881-34900 | Msa1445430:intron | 45.0% |
| ! | ATTCTTGTATTGGTCGAGCC+AGG | + | tig0031099:34902-34921 | None:intergenic | 45.0% |
| GGCTCGACCAATACAAGAAT+TGG | - | tig0031099:34902-34921 | Msa1445430:intron | 45.0% | |
| ! | ATGCTAATTGTTTGGAGCGG+AGG | - | tig0031099:35169-35188 | Msa1445430:CDS | 45.0% |
| CTACTAATTAGGAAGGGGGT+AGG | + | tig0031099:35216-35235 | None:intergenic | 45.0% | |
| CTACCCCCTTCCTAATTAGT+AGG | - | tig0031099:35214-35233 | Msa1445430:CDS | 45.0% | |
| GCTCCTACTAATTAGGAAGG+GGG | + | tig0031099:35220-35239 | None:intergenic | 45.0% | |
| GGCTCCTACTAATTAGGAAG+GGG | + | tig0031099:35221-35240 | None:intergenic | 45.0% | |
| GGCTGATCTGATATTGCATC+TGG | - | tig0031099:35268-35287 | Msa1445430:CDS | 45.0% | |
| ! | GAGTGCTGCCATAATTTGGT+AGG | - | tig0031099:35418-35437 | Msa1445430:intron | 45.0% |
| GCTGCCATAATTTGGTAGGA+TGG | - | tig0031099:35422-35441 | Msa1445430:intron | 45.0% | |
| TCGCCCATCCTACCAAATTA+TGG | + | tig0031099:35429-35448 | None:intergenic | 45.0% | |
| ATAATTTGGTAGGATGGGCG+AGG | - | tig0031099:35428-35447 | Msa1445430:intron | 45.0% | |
| !! | TCATGAGTTTTGGTAGGTCG+TGG | - | tig0031099:35464-35483 | Msa1445430:intron | 45.0% |
| TAGAACACACTAGGATGCCT+TGG | - | tig0031099:35741-35760 | Msa1445430:intron | 45.0% | |
| ! | GGTGGGTGCTGCAAATTATT+TGG | - | tig0031099:35925-35944 | Msa1445430:intron | 45.0% |
| ! | TGGGTTCTAACAGTAGAACC+TGG | - | tig0031099:35945-35964 | Msa1445430:intron | 45.0% |
| ! | GGGTTCTAACAGTAGAACCT+GGG | - | tig0031099:35946-35965 | Msa1445430:intron | 45.0% |
| ! | GGTTCTAACAGTAGAACCTG+GGG | - | tig0031099:35947-35966 | Msa1445430:intron | 45.0% |
| GTTCTAACAGTAGAACCTGG+GGG | - | tig0031099:35948-35967 | Msa1445430:intron | 45.0% | |
| ! | TGGGCATGTTTGTGACGTTT+TGG | - | tig0031099:35972-35991 | Msa1445430:intron | 45.0% |
| !!! | GTGACGTTTTGGAGAGATTG+GGG | - | tig0031099:35983-36002 | Msa1445430:intron | 45.0% |
| CCAAAGAGAAGATAGACCAC+TGG | + | tig0031099:36105-36124 | None:intergenic | 45.0% | |
| CCAGTGGTCTATCTTCTCTT+TGG | - | tig0031099:36102-36121 | Msa1445430:intron | 45.0% | |
| TTCGGCTCCCAAGATTGTTT+CGG | - | tig0031099:36204-36223 | Msa1445430:intron | 45.0% | |
| GCATATGCTTCTATTGGAGG+TGG | - | tig0031099:36287-36306 | Msa1445430:intron | 45.0% | |
| GTTGTTTGGCTATGTAGCAC+TGG | - | tig0031099:36396-36415 | Msa1445430:intron | 45.0% | |
| ! | ATGGGTTCTGATGATCATGC+AGG | - | tig0031099:36680-36699 | Msa1445430:CDS | 45.0% |
| ACTTGCACTTAAGAGGGCTT+TGG | - | tig0031099:36704-36723 | Msa1445430:CDS | 45.0% | |
| !! | TAAGAGGGCTTTGGAAGCAA+AGG | - | tig0031099:36713-36732 | Msa1445430:intron | 45.0% |
| !! | AAGAGGGCTTTGGAAGCAAA+GGG | - | tig0031099:36714-36733 | Msa1445430:intron | 45.0% |
| ! | TCGAGAGTTTTTCTGAGCCA+AGG | - | tig0031099:37301-37320 | Msa1445430:intron | 45.0% |
| ! | CGAGAGTTTTTCTGAGCCAA+GGG | - | tig0031099:37302-37321 | Msa1445430:intron | 45.0% |
| ! | CCTCGGAATAATCGGTTCTT+GGG | + | tig0031099:37381-37400 | None:intergenic | 45.0% |
| CCAAGAACCGATTATTCCGA+GGG | - | tig0031099:37379-37398 | Msa1445430:intron | 45.0% | |
| CAAGAACCGATTATTCCGAG+GGG | - | tig0031099:37380-37399 | Msa1445430:intron | 45.0% | |
| ATTGGACCCCTCGGAATAAT+CGG | + | tig0031099:37389-37408 | None:intergenic | 45.0% | |
| !! | ATACAAGTGGATGGTGGGAT+TGG | + | tig0031099:37407-37426 | None:intergenic | 45.0% |
| CATAACTGACAGGAACACCA+TGG | + | tig0031099:37592-37611 | None:intergenic | 45.0% | |
| GGATCCATACCGAGATCAAA+TGG | - | tig0031099:37625-37644 | Msa1445430:intron | 45.0% | |
| TCCATACCGAGATCAAATGG+AGG | - | tig0031099:37628-37647 | Msa1445430:intron | 45.0% | |
| TCCTCCATTTGATCTCGGTA+TGG | + | tig0031099:37632-37651 | None:intergenic | 45.0% | |
| TGCACTCCTCCATTTGATCT+CGG | + | tig0031099:37637-37656 | None:intergenic | 45.0% | |
| GTGCATCTTCTTGATCATGC+AGG | - | tig0031099:37652-37671 | Msa1445430:intron | 45.0% | |
| GATGAAGTCCTAGTTGAGCT+TGG | - | tig0031099:37920-37939 | Msa1445430:CDS | 45.0% | |
| !! | GTCTTTTAGCTGTTCCAGTG+AGG | - | tig0031099:37960-37979 | Msa1445430:CDS | 45.0% |
| TGACATGGAGTACAGGGAAT+TGG | - | tig0031099:38108-38127 | Msa1445430:intron | 45.0% | |
| ! | AGGGAATTGGCTCTTGAATC+TGG | - | tig0031099:38121-38140 | Msa1445430:intron | 45.0% |
| GCAAGATCCATGATGAAGGA+AGG | + | tig0031099:38187-38206 | None:intergenic | 45.0% | |
| CATCATGGATCTTGCAGATG+CGG | - | tig0031099:38192-38211 | Msa1445430:intron | 45.0% | |
| GCATTTATTGCTGCTGCTGA+TGG | + | tig0031099:38232-38251 | None:intergenic | 45.0% | |
| !! | TATCTTCAGAGGTGCTGGTA+GGG | + | tig0031099:38255-38274 | None:intergenic | 45.0% |
| !! | ATATCTTCAGAGGTGCTGGT+AGG | + | tig0031099:38256-38275 | None:intergenic | 45.0% |
| ! | TACCAGCACCTCTGAAGATA+TGG | - | tig0031099:38255-38274 | Msa1445430:intron | 45.0% |
| ! | ATCCATATCTTCAGAGGTGC+TGG | + | tig0031099:38260-38279 | None:intergenic | 45.0% |
| GTTGGCGTGTACGTCAAAGA+TGG | + | tig0031099:34353-34372 | None:intergenic | 50.0% | |
| ! | CGACGTTGGAAAGAGTTGGT+CGG | + | tig0031099:34418-34437 | None:intergenic | 50.0% |
| ACGACGACGTTGGAAAGAGT+TGG | + | tig0031099:34422-34441 | None:intergenic | 50.0% | |
| !! | AGGGATTGAGGGTATCGGTT+GGG | + | tig0031099:34495-34514 | None:intergenic | 50.0% |
| !! | AAGGGATTGAGGGTATCGGT+TGG | + | tig0031099:34496-34515 | None:intergenic | 50.0% |
| CGAGCCAGGACACAAAAACA+AGG | + | tig0031099:34888-34907 | None:intergenic | 50.0% | |
| TTATCTTGGGCAGCGTGAGT+AGG | + | tig0031099:35004-35023 | None:intergenic | 50.0% | |
| CACGCTGCCCAAGATAAAGT+TGG | - | tig0031099:35007-35026 | Msa1445430:CDS | 50.0% | |
| !! | GGTGTGTTGCTTCTCAACCT+AGG | - | tig0031099:35028-35047 | Msa1445430:intron | 50.0% |
| !! | GTGTTGCTTCTCAACCTAGG+TGG | - | tig0031099:35031-35050 | Msa1445430:intron | 50.0% |
| !! | AGTTTTGGTAGGTCGTGGCA+AGG | - | tig0031099:35469-35488 | Msa1445430:intron | 50.0% |
| TAACAGTAGAACCTGGGGGT+TGG | - | tig0031099:35952-35971 | Msa1445430:intron | 50.0% | |
| AACAGTAGAACCTGGGGGTT+GGG | - | tig0031099:35953-35972 | Msa1445430:intron | 50.0% | |
| CTTCCTTGGATTTAGGAGCC+CGG | + | tig0031099:36268-36287 | None:intergenic | 50.0% | |
| TGCAGGCACTTGCACTTAAG+AGG | - | tig0031099:36697-36716 | Msa1445430:CDS | 50.0% | |
| GCAGGCACTTGCACTTAAGA+GGG | - | tig0031099:36698-36717 | Msa1445430:CDS | 50.0% | |
| TCTATGTTGGGATGCGGTAC+TGG | - | tig0031099:36751-36770 | Msa1445430:intron | 50.0% | |
| GGATGGAATAACAAGGCTCG+TGG | - | tig0031099:36991-37010 | Msa1445430:intron | 50.0% | |
| ACTGATGCTTGACCCAGTAG+TGG | + | tig0031099:37047-37066 | None:intergenic | 50.0% | |
| TGGGTCAAGCATCAGTGTTC+TGG | - | tig0031099:37051-37070 | Msa1445430:intron | 50.0% | |
| !! | GTGTTCTGGAGCAAACGTTC+AGG | - | tig0031099:37065-37084 | Msa1445430:intron | 50.0% |
| ! | GAGTTTTTCTGAGCCAAGGG+AGG | - | tig0031099:37305-37324 | Msa1445430:intron | 50.0% |
| ! | GGAATAATCGGTTCTTGGGC+CGG | + | tig0031099:37377-37396 | None:intergenic | 50.0% |
| CCCAAGAACCGATTATTCCG+AGG | - | tig0031099:37378-37397 | Msa1445430:intron | 50.0% | |
| ! | CCCTCGGAATAATCGGTTCT+TGG | + | tig0031099:37382-37401 | None:intergenic | 50.0% |
| TGGTATGCCACGGTTCAGAT+TGG | + | tig0031099:37526-37545 | None:intergenic | 50.0% | |
| TGAGCACGCTCTTGCTTATC+AGG | - | tig0031099:37700-37719 | Msa1445430:intron | 50.0% | |
| GATTTGAGCTTGAGCAGAGC+TGG | - | tig0031099:37764-37783 | Msa1445430:intron | 50.0% | |
| ! | ATGGATTGCCAGAGTCGAGT+GGG | - | tig0031099:37869-37888 | Msa1445430:CDS | 50.0% |
| ! | CTTTCTGGCCAAGCTCAACT+AGG | + | tig0031099:37931-37950 | None:intergenic | 50.0% |
| CTAGTTGAGCTTGGCCAGAA+AGG | - | tig0031099:37929-37948 | Msa1445430:CDS | 50.0% | |
| TCTCACCCCTTCCTTCATCA+TGG | - | tig0031099:38177-38196 | Msa1445430:intron | 50.0% | |
| !! | ATCTTCAGAGGTGCTGGTAG+GGG | + | tig0031099:38254-38273 | None:intergenic | 50.0% |
| ! | TGGAAAGAGTTGGTCGGCGT+GGG | + | tig0031099:34412-34431 | None:intergenic | 55.0% |
| ! | TTGGAAAGAGTTGGTCGGCG+TGG | + | tig0031099:34413-34432 | None:intergenic | 55.0% |
| TGCGGCGATGAAGGGATTGA+GGG | + | tig0031099:34506-34525 | None:intergenic | 55.0% | |
| TGAACATCGTCCAGCGTCTC+TGG | + | tig0031099:35058-35077 | None:intergenic | 55.0% | |
| CTGGGTACATCTTGTGCCAG+TGG | - | tig0031099:36086-36105 | Msa1445430:intron | 55.0% | |
| ! | GGGCCGGATACCGAGTTTTA+AGG | + | tig0031099:37361-37380 | None:intergenic | 55.0% |
| !! | GATGGATTGCCAGAGTCGAG+TGG | - | tig0031099:37868-37887 | Msa1445430:CDS | 55.0% |
| CAAGAATTGGGCACGTGTCC+CGG | - | tig0031099:38147-38166 | Msa1445430:intron | 55.0% | |
| CTGCGGCGATGAAGGGATTG+AGG | + | tig0031099:34507-34526 | None:intergenic | 60.0% | |
| TTGGTAGGTCGTGGCAAGGC+TGG | - | tig0031099:35473-35492 | Msa1445430:intron | 60.0% | |
| CACAAACATGCCCAACCCCC+AGG | + | tig0031099:35966-35985 | None:intergenic | 60.0% | |
| GCTCCGGGCTCCTAAATCCA+AGG | - | tig0031099:36262-36281 | Msa1445430:intron | 60.0% | |
| !! | GATGGTGGGATTGGACCCCT+CGG | + | tig0031099:37398-37417 | None:intergenic | 60.0% |
| AAGGGGTGAGACCAAGAGCC+GGG | + | tig0031099:38168-38187 | None:intergenic | 60.0% | |
| GAAGGGGTGAGACCAAGAGC+CGG | + | tig0031099:38169-38188 | None:intergenic | 60.0% | |
| TCGGCGTGGGTGAGGAAGGA+AGG | + | tig0031099:34399-34418 | None:intergenic | 65.0% | |
| TTGGTCGGCGTGGGTGAGGA+AGG | + | tig0031099:34403-34422 | None:intergenic | 65.0% | |
| ! | AGAGTTGGTCGGCGTGGGTG+AGG | + | tig0031099:34407-34426 | None:intergenic | 65.0% |
| GACGACGACGACGACGACGT+TGG | + | tig0031099:34432-34451 | None:intergenic | 65.0% | |
| CCAGCGTCTCTGGTCCACCT+AGG | + | tig0031099:35048-35067 | None:intergenic | 65.0% | |
| CCTAGGTGGACCAGAGACGC+TGG | - | tig0031099:35045-35064 | Msa1445430:intron | 65.0% | |
| GTACAGGGCCCACTCGACTC+TGG | + | tig0031099:37880-37899 | None:intergenic | 65.0% | |
| GTCGAGTGGGCCCTGTACAG+TGG | - | tig0031099:37882-37901 | Msa1445430:CDS | 65.0% | |
| GGTCGTGGCAAGGCTGGAGC+AGG | - | tig0031099:35479-35498 | Msa1445430:intron | 70.0% | |
| TGGGCACGTGTCCCGGCTCT+TGG | - | tig0031099:38154-38173 | Msa1445430:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031099 | gene | 34295 | 38625 | 34295 | ID=Msa1445430;Name=Msa1445430 |
| tig0031099 | mRNA | 34295 | 38625 | 34295 | ID=Msa1445430-mRNA-1;Parent=Msa1445430;Name=Msa1445430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|0.88|0.9|1|0.88|0.8|10|238|497 |
| tig0031099 | exon | 34295 | 34848 | 34295 | ID=Msa1445430-mRNA-1:exon:14992;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 34939 | 35039 | 34939 | ID=Msa1445430-mRNA-1:exon:14991;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 35130 | 35351 | 35130 | ID=Msa1445430-mRNA-1:exon:14990;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 35594 | 35720 | 35594 | ID=Msa1445430-mRNA-1:exon:14989;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 35834 | 35937 | 35834 | ID=Msa1445430-mRNA-1:exon:14988;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 36117 | 36218 | 36117 | ID=Msa1445430-mRNA-1:exon:14987;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 36580 | 36723 | 36580 | ID=Msa1445430-mRNA-1:exon:14986;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 37812 | 38115 | 37812 | ID=Msa1445430-mRNA-1:exon:14985;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 38385 | 38516 | 38385 | ID=Msa1445430-mRNA-1:exon:14984;Parent=Msa1445430-mRNA-1 |
| tig0031099 | exon | 38538 | 38625 | 38538 | ID=Msa1445430-mRNA-1:exon:14983;Parent=Msa1445430-mRNA-1 |
| tig0031099 | five_prime_UTR | 38538 | 38625 | 38538 | ID=Msa1445430-mRNA-1:five_prime_utr;Parent=Msa1445430-mRNA-1 |
| tig0031099 | five_prime_UTR | 38459 | 38516 | 38459 | ID=Msa1445430-mRNA-1:five_prime_utr;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 38385 | 38458 | 38385 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 37812 | 38115 | 37812 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 36580 | 36723 | 36580 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 36117 | 36218 | 36117 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 35834 | 35937 | 35834 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 35594 | 35720 | 35594 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 35130 | 35351 | 35130 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 34939 | 35039 | 34939 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | CDS | 34533 | 34848 | 34533 | ID=Msa1445430-mRNA-1:cds;Parent=Msa1445430-mRNA-1 |
| tig0031099 | three_prime_UTR | 34295 | 34532 | 34295 | ID=Msa1445430-mRNA-1:three_prime_utr;Parent=Msa1445430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
