Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381630 | XP_003603135.1 | 92.354 | 497 | 12 | 3 | 1 | 497 | 1 | 471 | 0.0 | 932 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381630 | sp|P42044|HEMH_CUCSA | 67.078 | 486 | 123 | 6 | 17 | 495 | 33 | 488 | 0.0 | 635 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381630 | G7J7L6 | 92.354 | 497 | 12 | 3 | 1 | 497 | 1 | 471 | 0.0 | 932 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029020 | Msa0381630 | 0.816467 | 5.448880e-52 | -8.615850e-47 |
Msa0076650 | Msa0381630 | 0.801178 | 1.017631e-48 | -8.615850e-47 |
Msa0198170 | Msa0381630 | 0.810720 | 1.001762e-50 | -8.615850e-47 |
Msa0381630 | Msa0659800 | 0.802719 | 4.910118e-49 | -8.615850e-47 |
Msa0381630 | Msa0725480 | 0.810608 | 1.059249e-50 | -8.615850e-47 |
Msa0381630 | Msa0766100 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
Msa0381630 | Msa1332110 | 0.804812 | 1.804972e-49 | -8.615850e-47 |
Msa0381630 | Msa1332140 | 0.802056 | 6.722901e-49 | -8.615850e-47 |
Msa0381630 | Msa1371080 | 0.814821 | 1.267502e-51 | -8.615850e-47 |
Msa0381630 | Msa1417840 | 0.967983 | 4.909444e-128 | -8.615850e-47 |
Msa0381630 | Msa1445430 | 0.981604 | 5.371737e-153 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381630 | MtrunA17_Chr3g0135611 | 92.354 | 497 | 12 | 3 | 1 | 497 | 1 | 471 | 0.0 | 932 |
Msa0381630 | MtrunA17_Chr4g0008821 | 84.274 | 496 | 44 | 3 | 2 | 497 | 13 | 474 | 0.0 | 812 |
Msa0381630 | MtrunA17_Chr3g0131031 | 58.980 | 451 | 154 | 4 | 4 | 451 | 22 | 444 | 0.0 | 521 |
Msa0381630 | MtrunA17_Chr8g0385271 | 58.465 | 443 | 154 | 3 | 10 | 451 | 31 | 444 | 0.0 | 517 |
Msa0381630 | MtrunA17_Chr7g0235891 | 61.538 | 52 | 20 | 0 | 400 | 451 | 88 | 139 | 1.77e-13 | 67.8 |
Msa0381630 | MtrunA17_Chr4g0045871 | 64.444 | 45 | 14 | 1 | 414 | 456 | 5 | 49 | 8.02e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0381630 | AT5G26030.1 | 64.435 | 478 | 135 | 7 | 21 | 494 | 19 | 465 | 0.0 | 610 |
Msa0381630 | AT5G26030.2 | 64.435 | 478 | 135 | 7 | 21 | 494 | 19 | 465 | 0.0 | 610 |
Msa0381630 | AT2G30390.1 | 66.667 | 354 | 95 | 1 | 98 | 451 | 100 | 430 | 1.43e-172 | 496 |
Msa0381630 | AT2G30390.2 | 64.835 | 364 | 95 | 2 | 98 | 451 | 100 | 440 | 2.29e-169 | 488 |
Find 145 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGACTCTTCACACCTTTC+TGG | 0.158781 | 3_1:+83846783 | None:intergenic |
CCTGAACGCAGTTATCATTT+TGG | 0.188485 | 3_1:+83846376 | None:intergenic |
GCATATGCTTCCTTGGATTT+AGG | 0.213761 | 3_1:+83848454 | None:intergenic |
TGAGCACGCTCTTGCTTATC+AGG | 0.255136 | 3_1:-83847026 | Msa0381630:CDS |
GAACATATTCGTTCGTGATT+TGG | 0.259393 | 3_1:-83850426 | Msa0381630:five_prime_UTR |
AGATGTTATTAAAAGGAAAA+TGG | 0.299797 | 3_1:+83850352 | None:intergenic |
ATCTTGGCGAAGTATTTAAC+TGG | 0.311532 | 3_1:+83846440 | None:intergenic |
ACTAGGACTTCATCTGTATA+TGG | 0.311851 | 3_1:+83846815 | None:intergenic |
TGAGCGAGAAACTAAGTTTC+TGG | 0.314149 | 3_1:+83849798 | None:intergenic |
TGGGTCAAGCATCAGTGTTC+TGG | 0.320253 | 3_1:-83847675 | Msa0381630:CDS |
TTGAATCTGGCATCAAGAAT+TGG | 0.321498 | 3_1:-83846592 | Msa0381630:CDS |
TTGATACCAAGAGTTTATAA+TGG | 0.330575 | 3_1:+83847494 | None:intergenic |
ACATCTATGAAATCAAATTC+AGG | 0.348405 | 3_1:+83846328 | None:intergenic |
AGTACAAGTGGTAAACTGTT+TGG | 0.352485 | 3_1:+83846146 | None:intergenic |
TGGGCACGTGTCCCGGCTCT+TGG | 0.364586 | 3_1:-83846572 | Msa0381630:CDS |
TCTGGTGCCAATTCTTGTAT+TGG | 0.377066 | 3_1:+83849816 | None:intergenic |
ATCAAAGAGAAGGTTATATT+AGG | 0.378881 | 3_1:-83847476 | Msa0381630:CDS |
GGCTCGACCAATACAAGAAT+TGG | 0.380637 | 3_1:-83849823 | Msa0381630:CDS |
TACCAGCACCTCTGAAGATA+TGG | 0.387408 | 3_1:-83846471 | Msa0381630:CDS |
GCAACACACCAACTTTATCT+TGG | 0.387419 | 3_1:+83849710 | None:intergenic |
TTCGGCTCCCAAGATTGTTT+CGG | 0.387788 | 3_1:-83848522 | Msa0381630:CDS |
AGGGAATTGGCTCTTGAATC+TGG | 0.388268 | 3_1:-83846605 | Msa0381630:CDS |
CAGTAGTGGATATAGAAAAC+TGG | 0.391052 | 3_1:+83847696 | None:intergenic |
AAGGAAGCATATGCTTCTAT+TGG | 0.393699 | 3_1:-83848445 | Msa0381630:CDS |
GATTTGAGCTTGAGCAGAGC+TGG | 0.405773 | 3_1:-83846962 | Msa0381630:CDS |
GTACAAGTGGTAAACTGTTT+GGG | 0.408812 | 3_1:+83846147 | None:intergenic |
AATAGAAGCATATGCTTCCT+TGG | 0.409366 | 3_1:+83848447 | None:intergenic |
TGGAGAAACCGAAACAATCT+TGG | 0.415074 | 3_1:+83848514 | None:intergenic |
CAAGAGTTTATAATGGAAAC+AGG | 0.416911 | 3_1:+83847501 | None:intergenic |
TGAATCTGGCATCAAGAATT+GGG | 0.420289 | 3_1:-83846591 | Msa0381630:CDS |
TGCAGGCACTTGCACTTAAG+AGG | 0.422306 | 3_1:-83848029 | Msa0381630:intron |
TGAACATCGTCCAGCGTCTC+TGG | 0.424583 | 3_1:+83849670 | None:intergenic |
CCAAAATGATAACTGCGTTC+AGG | 0.426212 | 3_1:-83846376 | Msa0381630:CDS |
TTGAAAATCTGCGGCGATGA+AGG | 0.429694 | 3_1:+83850212 | None:intergenic |
TGACATGGAGTACAGGGAAT+TGG | 0.432816 | 3_1:-83846618 | Msa0381630:CDS |
GTGTTCTGGAGCAAACGTTC+AGG | 0.435038 | 3_1:-83847661 | Msa0381630:intron |
CTGTTTCCATTATAAACTCT+TGG | 0.436093 | 3_1:-83847500 | Msa0381630:CDS |
TCTATGTTGGGATGCGGTAC+TGG | 0.440002 | 3_1:-83847975 | Msa0381630:CDS |
ATCCATATCTTCAGAGGTGC+TGG | 0.440328 | 3_1:+83846469 | None:intergenic |
CTCTCTTCAAATATCTATGT+TGG | 0.442020 | 3_1:-83847988 | Msa0381630:CDS |
CAAGAATTGGGCACGTGTCC+CGG | 0.442821 | 3_1:-83846579 | Msa0381630:CDS |
TATGGTTTCAACCACTCTAC+AGG | 0.443522 | 3_1:+83846833 | None:intergenic |
GTCAGTTATGTTGAGAATGC+TGG | 0.450633 | 3_1:-83847124 | Msa0381630:CDS |
ACTTGCACTTAAGAGGGCTT+TGG | 0.451923 | 3_1:-83848022 | Msa0381630:CDS |
GAGTGCGTTCATAACTGAAA+TGG | 0.452304 | 3_1:+83850273 | None:intergenic |
TCTCACCCCTTCCTTCATCA+TGG | 0.453039 | 3_1:-83846549 | Msa0381630:CDS |
CAACACACCAACTTTATCTT+GGG | 0.457672 | 3_1:+83849711 | None:intergenic |
AAGAAATTGACATGGAGTAC+AGG | 0.459008 | 3_1:-83846625 | Msa0381630:CDS |
TCTCTTCAAATATCTATGTT+GGG | 0.463786 | 3_1:-83847987 | Msa0381630:CDS |
TGAATTGCTTCTTCAGTGAA+TGG | 0.469168 | 3_1:+83847949 | None:intergenic |
GGGAAGATGCTTATTTGTCT+AGG | 0.470752 | 3_1:-83847527 | Msa0381630:CDS |
AAGGGGTGAGACCAAGAGCC+GGG | 0.475278 | 3_1:+83846561 | None:intergenic |
GCATTTATTGCTGCTGCTGA+TGG | 0.484929 | 3_1:+83846497 | None:intergenic |
TATTGATATAGGATATCATT+CGG | 0.487615 | 3_1:-83848540 | Msa0381630:intron |
ATTCTTGTATTGGTCGAGCC+AGG | 0.487791 | 3_1:+83849826 | None:intergenic |
AGAGTTGGTCGGCGTGGGTG+AGG | 0.491302 | 3_1:+83850320 | None:intergenic |
TATCTTCAGAGGTGCTGGTA+GGG | 0.493651 | 3_1:+83846474 | None:intergenic |
GGATCCATACCGAGATCAAA+TGG | 0.499443 | 3_1:-83847101 | Msa0381630:CDS |
CTGCGGCGATGAAGGGATTG+AGG | 0.499797 | 3_1:+83850220 | None:intergenic |
AGAATAAAACTCACCTCCCT+TGG | 0.499931 | 3_1:+83847408 | None:intergenic |
CTCAAGCTCAAATCAGAAGA+TGG | 0.505920 | 3_1:+83846971 | None:intergenic |
TTGTAACAAGTCTACATCTC+AGG | 0.507679 | 3_1:-83849866 | Msa0381630:CDS |
AGAAGGTTATATTAGGTCAA+TGG | 0.510506 | 3_1:-83847469 | Msa0381630:CDS |
GAAGGGGTGAGACCAAGAGC+CGG | 0.510828 | 3_1:+83846560 | None:intergenic |
CTTTCTGGCCAAGCTCAACT+AGG | 0.513801 | 3_1:+83846798 | None:intergenic |
GAAGCATATGCTTCTATTGG+AGG | 0.515453 | 3_1:-83848442 | Msa0381630:CDS |
TCCTCCATTTGATCTCGGTA+TGG | 0.518447 | 3_1:+83847097 | None:intergenic |
GGAGAAACCGAAACAATCTT+GGG | 0.521215 | 3_1:+83848515 | None:intergenic |
TACCCGTGTTACTTGCTACT+CGG | 0.521616 | 3_1:-83849890 | Msa0381630:CDS |
CAAAACTGATATCTACGCTC+CGG | 0.521810 | 3_1:-83848480 | Msa0381630:CDS |
ATCTTCAGAGGTGCTGGTAG+GGG | 0.525267 | 3_1:+83846475 | None:intergenic |
AGGGATTGAGGGTATCGGTT+GGG | 0.525449 | 3_1:+83850232 | None:intergenic |
CGTATGTATTATATCTGTAA+AGG | 0.526845 | 3_1:+83846252 | None:intergenic |
ATAGAAAACTGGGGATAAAG+AGG | 0.527953 | 3_1:+83847707 | None:intergenic |
TTGGAAAGAGTTGGTCGGCG+TGG | 0.532518 | 3_1:+83850314 | None:intergenic |
TCAGTTATGTTGAGAATGCT+GGG | 0.533403 | 3_1:-83847123 | Msa0381630:CDS |
TAAGAGGGCTTTGGAAGCAA+AGG | 0.534948 | 3_1:-83848013 | Msa0381630:CDS |
GTTATTAAAAGGAAAATGGT+TGG | 0.536432 | 3_1:+83850356 | None:intergenic |
TGAAAATCTGCGGCGATGAA+GGG | 0.539351 | 3_1:+83850213 | None:intergenic |
GTCTTTATCCATATCTTCAG+AGG | 0.540172 | 3_1:+83846463 | None:intergenic |
GTTGTATAGATTAGTACAAG+TGG | 0.541939 | 3_1:+83846134 | None:intergenic |
AAAACTGATATCTACGCTCC+GGG | 0.542299 | 3_1:-83848479 | Msa0381630:CDS |
AAGAGGGCTTTGGAAGCAAA+GGG | 0.543258 | 3_1:-83848012 | Msa0381630:CDS |
GGTGTGTTGCTTCTCAACCT+AGG | 0.543801 | 3_1:-83849697 | Msa0381630:CDS |
TCTGTAAAGGAGTAAAACCC+AGG | 0.545654 | 3_1:+83846265 | None:intergenic |
AGTAAGCTGCTCATTATAAG+TGG | 0.545992 | 3_1:+83849756 | None:intergenic |
CTAGTTGAGCTTGGCCAGAA+AGG | 0.546122 | 3_1:-83846797 | Msa0381630:CDS |
TGCGGCGATGAAGGGATTGA+GGG | 0.547203 | 3_1:+83850221 | None:intergenic |
GAATTGCTTCTTCAGTGAAT+GGG | 0.548173 | 3_1:+83847950 | None:intergenic |
GCAAGATCCATGATGAAGGA+AGG | 0.554278 | 3_1:+83846542 | None:intergenic |
TGGAAAGAGTTGGTCGGCGT+GGG | 0.554554 | 3_1:+83850315 | None:intergenic |
AACTCTTGGTATCAAAGAGA+AGG | 0.555055 | 3_1:-83847486 | Msa0381630:CDS |
TGCACTCCTCCATTTGATCT+CGG | 0.555763 | 3_1:+83847092 | None:intergenic |
AGTAGTGGATATAGAAAACT+GGG | 0.558376 | 3_1:+83847697 | None:intergenic |
GTGTGATAGATTAAGAAGGA+TGG | 0.561861 | 3_1:-83847752 | Msa0381630:intron |
ATCTGCAAGATCCATGATGA+AGG | 0.564670 | 3_1:+83846538 | None:intergenic |
TTATCTTGGGCAGCGTGAGT+AGG | 0.565197 | 3_1:+83849724 | None:intergenic |
CAAGATCCATGATGAAGGAA+GGG | 0.567383 | 3_1:+83846543 | None:intergenic |
AAGGGATTGAGGGTATCGGT+TGG | 0.567491 | 3_1:+83850231 | None:intergenic |
GATGAAGTCCTAGTTGAGCT+TGG | 0.570100 | 3_1:-83846806 | Msa0381630:CDS |
CAAATATCTATGTTGGGATG+CGG | 0.570330 | 3_1:-83847981 | Msa0381630:CDS |
CTTCCTTGGATTTAGGAGCC+CGG | 0.570429 | 3_1:+83848461 | None:intergenic |
GCAGGCACTTGCACTTAAGA+GGG | 0.572079 | 3_1:-83848028 | Msa0381630:intron |
GCGAAAAGATTAAAGAGGAA+AGG | 0.572094 | 3_1:+83849646 | None:intergenic |
GCATATGCTTCTATTGGAGG+TGG | 0.572738 | 3_1:-83848439 | Msa0381630:CDS |
CCTAGGTGGACCAGAGACGC+TGG | 0.572902 | 3_1:-83849680 | Msa0381630:CDS |
CTAATGATAGTGTACCTCAC+TGG | 0.572939 | 3_1:+83846752 | None:intergenic |
CCAGCGTCTCTGGTCCACCT+AGG | 0.573383 | 3_1:+83849680 | None:intergenic |
GTCGAGTGGGCCCTGTAGAG+TGG | 0.575306 | 3_1:-83846844 | Msa0381630:CDS |
CACGCTGCCCAAGATAAAGT+TGG | 0.577159 | 3_1:-83849718 | Msa0381630:CDS |
AGAAATTGACATGGAGTACA+GGG | 0.578767 | 3_1:-83846624 | Msa0381630:CDS |
CATCATGGATCTTGCAGATG+CGG | 0.579000 | 3_1:-83846534 | Msa0381630:CDS |
GTGCATCTTCTTGATCATGC+AGG | 0.580701 | 3_1:-83847074 | Msa0381630:CDS |
ATATCTTCAGAGGTGCTGGT+AGG | 0.580852 | 3_1:+83846473 | None:intergenic |
AAGATCCATGATGAAGGAAG+GGG | 0.588954 | 3_1:+83846544 | None:intergenic |
GCATTCTCAACATAACTGAC+AGG | 0.591932 | 3_1:+83847127 | None:intergenic |
TCTTGTGTGATAGATTAAGA+AGG | 0.597670 | 3_1:-83847756 | Msa0381630:intron |
ATGCAGGAATTGAAAGCTAG+AGG | 0.599634 | 3_1:-83847058 | Msa0381630:CDS |
CAACATAGATATTTGAAGAG+AGG | 0.602336 | 3_1:+83847989 | None:intergenic |
GACTCTTGAAGAAATTGACA+TGG | 0.603916 | 3_1:-83846633 | Msa0381630:CDS |
ACGACGACGTTGGAAAGAGT+TGG | 0.607940 | 3_1:+83850305 | None:intergenic |
ACTGATGCTTGACCCAGTAG+TGG | 0.613715 | 3_1:+83847682 | None:intergenic |
GCTCCGGGCTCCTAAATCCA+AGG | 0.618946 | 3_1:-83848464 | Msa0381630:CDS |
ACGCAAAATTACAGATGACC+AGG | 0.621225 | 3_1:-83848407 | Msa0381630:intron |
ATGGATTGCCAGAGTCGAGT+GGG | 0.621399 | 3_1:-83846857 | Msa0381630:intron |
GATCTGCGAAAAGATTAAAG+AGG | 0.632933 | 3_1:+83849641 | None:intergenic |
CATAACTGACAGGAACACCA+TGG | 0.639549 | 3_1:+83847137 | None:intergenic |
GATGGATTGCCAGAGTCGAG+TGG | 0.639812 | 3_1:-83846858 | Msa0381630:intron |
CTGTAAAGGAGTAAAACCCA+GGG | 0.640643 | 3_1:+83846266 | None:intergenic |
ATGGTTTCAACCACTCTACA+GGG | 0.643663 | 3_1:+83846834 | None:intergenic |
GTTGGCGTGTACGTCAAAGA+TGG | 0.646233 | 3_1:+83850374 | None:intergenic |
TCTTGGCGAAGTATTTAACT+GGG | 0.647791 | 3_1:+83846441 | None:intergenic |
ATAACTGACAGGAACACCAT+GGG | 0.647820 | 3_1:+83847138 | None:intergenic |
GATGAAGGGATTGAGGGTAT+CGG | 0.652118 | 3_1:+83850227 | None:intergenic |
GTGTTGCTTCTCAACCTAGG+TGG | 0.663732 | 3_1:-83849694 | Msa0381630:CDS |
TCTATGAAATCAAATTCAGG+TGG | 0.664584 | 3_1:+83846331 | None:intergenic |
GGATGGAATAACAAGGCTCG+TGG | 0.666352 | 3_1:-83847735 | Msa0381630:CDS |
CGACGTTGGAAAGAGTTGGT+CGG | 0.676199 | 3_1:+83850309 | None:intergenic |
ATCCGAGTAGCAAGTAACAC+GGG | 0.692447 | 3_1:+83849888 | None:intergenic |
ATGCTTACATTGAAAATCTG+CGG | 0.701447 | 3_1:+83850203 | None:intergenic |
AATCCGAGTAGCAAGTAACA+CGG | 0.705787 | 3_1:+83849887 | None:intergenic |
TTAAGAAGGATGGAATAACA+AGG | 0.706239 | 3_1:-83847742 | Msa0381630:CDS |
CAGTTATGTTGAGAATGCTG+GGG | 0.717752 | 3_1:-83847122 | Msa0381630:CDS |
TCCATACCGAGATCAAATGG+AGG | 0.721527 | 3_1:-83847098 | Msa0381630:CDS |
GTAGTGGATATAGAAAACTG+GGG | 0.817706 | 3_1:+83847698 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATT+TGG | + | chr3_1:83847419-83847438 | None:intergenic | 0.0% |
!!! | ATATTTTACATATATTAGAA+TGG | + | chr3_1:83846594-83846613 | None:intergenic | 10.0% |
!! | TCTAATATATGTAAAATATT+TGG | - | chr3_1:83846595-83846614 | Msa0381630:CDS | 10.0% |
!!! | ATTTATTGTATTTTATTGAT+TGG | - | chr3_1:83847837-83847856 | Msa0381630:intron | 10.0% |
!!! | CTGATAATTATTTTTAAAAA+TGG | + | chr3_1:83848311-83848330 | None:intergenic | 10.0% |
!!! | TTTATTTTATAGAAAATAAC+AGG | + | chr3_1:83848436-83848455 | None:intergenic | 10.0% |
!! | AAAAATAGAAAGAAAAAAAT+TGG | + | chr3_1:83849372-83849391 | None:intergenic | 10.0% |
!! | AGAAAAGTAAAAATGAAATA+GGG | + | chr3_1:83846434-83846453 | None:intergenic | 15.0% |
!! | AAGAAAAGTAAAAATGAAAT+AGG | + | chr3_1:83846435-83846454 | None:intergenic | 15.0% |
!! | TTGAAAATTGTTAAAAATTC+TGG | - | chr3_1:83847598-83847617 | Msa0381630:intron | 15.0% |
!! | ACATTTGATATAAAATGTAT+AGG | + | chr3_1:83848639-83848658 | None:intergenic | 15.0% |
!! | GTATCAATAACTTAAATAAA+TGG | + | chr3_1:83848697-83848716 | None:intergenic | 15.0% |
!!! | TTTATTTAAGTTATTGATAC+AGG | - | chr3_1:83848697-83848716 | Msa0381630:intron | 15.0% |
!!! | ACTGATATTATTTAATTTTC+AGG | - | chr3_1:83849004-83849023 | Msa0381630:intron | 15.0% |
!!! | CTGATATTATTTAATTTTCA+GGG | - | chr3_1:83849005-83849024 | Msa0381630:intron | 15.0% |
!!! | TTTTTTTCTTTCTATTTTTC+AGG | - | chr3_1:83849373-83849392 | Msa0381630:intron | 15.0% |
!!! | TGGTATTGACTTTTTTATTT+TGG | - | chr3_1:83846146-83846165 | Msa0381630:three_prime_UTR | 20.0% |
!! | AGATGTTATTAAAAGGAAAA+TGG | + | chr3_1:83846203-83846222 | None:intergenic | 20.0% |
!!! | TCATTTTTATGCTAATTGTT+TGG | - | chr3_1:83846988-83847007 | Msa0381630:CDS | 20.0% |
!!! | TGTTTACTTAAATTGTTTTC+CGG | + | chr3_1:83847224-83847243 | None:intergenic | 20.0% |
!!! | ATATTGTATAATGGAATACA+TGG | - | chr3_1:83847674-83847693 | Msa0381630:CDS | 20.0% |
!! | TATTGATATAGGATATCATT+CGG | - | chr3_1:83848012-83848031 | Msa0381630:CDS | 20.0% |
!!! | AATGGAAATAACATCTTTTA+TGG | - | chr3_1:83848487-83848506 | Msa0381630:CDS | 20.0% |
!!! | ATGGAAATAACATCTTTTAT+GGG | - | chr3_1:83848488-83848507 | Msa0381630:CDS | 20.0% |
!! | TAACAATAAACCCAAATTTA+AGG | + | chr3_1:83848768-83848787 | None:intergenic | 20.0% |
! | GTTATTAAAAGGAAAATGGT+TGG | + | chr3_1:83846199-83846218 | None:intergenic | 25.0% |
! | AGTAAAAATGAAATAGGGTT+TGG | + | chr3_1:83846429-83846448 | None:intergenic | 25.0% |
! | TGAGATTTATTGAGAGAATT+TGG | + | chr3_1:83846462-83846481 | None:intergenic | 25.0% |
! | AATTCTCTCAATAAATCTCA+TGG | - | chr3_1:83846462-83846481 | Msa0381630:CDS | 25.0% |
! | TGCAAAAAAAAGTAACATAC+AGG | + | chr3_1:83846936-83846955 | None:intergenic | 25.0% |
!! | GTTTACTTAAATTGTTTTCC+GGG | + | chr3_1:83847223-83847242 | None:intergenic | 25.0% |
!! | TAAATGTCAATCATGAGTTT+TGG | - | chr3_1:83847281-83847300 | Msa0381630:intron | 25.0% |
! | TGAATTATTCAATTCCAAAG+TGG | - | chr3_1:83847542-83847561 | Msa0381630:intron | 25.0% |
!! | AATTTTCAATGAAGATTCCA+AGG | + | chr3_1:83847587-83847606 | None:intergenic | 25.0% |
! | ATTATACAATATTCTAGTGC+AGG | + | chr3_1:83847666-83847685 | None:intergenic | 25.0% |
! | TGCACTAGAATATTGTATAA+TGG | - | chr3_1:83847665-83847684 | Msa0381630:CDS | 25.0% |
!!! | TTGTATTTTATTGATTGGTG+TGG | - | chr3_1:83847842-83847861 | Msa0381630:intron | 25.0% |
!!! | TGTATTTTATTGATTGGTGT+GGG | - | chr3_1:83847843-83847862 | Msa0381630:intron | 25.0% |
! | TCTGTTTATGTTTGATGTAA+TGG | - | chr3_1:83847866-83847885 | Msa0381630:intron | 25.0% |
!! | TATGTCTCTTGTATTGATAT+AGG | - | chr3_1:83848001-83848020 | Msa0381630:CDS | 25.0% |
! | GGGGAAAATAAAAATAAGAA+AGG | + | chr3_1:83848196-83848215 | None:intergenic | 25.0% |
! | TTGAATGTAATCATGTATGT+CGG | + | chr3_1:83848282-83848301 | None:intergenic | 25.0% |
! | TCTCTTCAAATATCTATGTT+GGG | - | chr3_1:83848565-83848584 | Msa0381630:intron | 25.0% |
!! | CATTTTGTCACCTTAAATTT+GGG | - | chr3_1:83848755-83848774 | Msa0381630:intron | 25.0% |
! | AAATTCTCTAAATCATGCAA+GGG | + | chr3_1:83848943-83848962 | None:intergenic | 25.0% |
! | AAAATTCTCTAAATCATGCA+AGG | + | chr3_1:83848944-83848963 | None:intergenic | 25.0% |
! | TTGATACCAAGAGTTTATAA+TGG | + | chr3_1:83849061-83849080 | None:intergenic | 25.0% |
! | ATCAAAGAGAAGGTTATATT+AGG | - | chr3_1:83849076-83849095 | Msa0381630:intron | 25.0% |
! | AGGTTCAGAAAAAAAATCAT+AGG | + | chr3_1:83849283-83849302 | None:intergenic | 25.0% |
! | TTTGTATTCTTGCTTTCTTT+GGG | - | chr3_1:83849639-83849658 | Msa0381630:CDS | 25.0% |
! | CAATAAAAATGTCAGATACA+GGG | + | chr3_1:83849674-83849693 | None:intergenic | 25.0% |
!! | TATCTGACATTTTTATTGGA+TGG | - | chr3_1:83849676-83849695 | Msa0381630:CDS | 25.0% |
! | AATTGAACCAAAAAACATCT+TGG | + | chr3_1:83850131-83850150 | None:intergenic | 25.0% |
!!! | GATGTTTTTTGGTTCAATTT+TGG | - | chr3_1:83850132-83850151 | Msa0381630:intron | 25.0% |
! | ACATCTATGAAATCAAATTC+AGG | + | chr3_1:83850227-83850246 | None:intergenic | 25.0% |
!!! | TATACTTCATTTTTTTCCCT+GGG | - | chr3_1:83850270-83850289 | Msa0381630:exon | 25.0% |
! | CGTATGTATTATATCTGTAA+AGG | + | chr3_1:83850303-83850322 | None:intergenic | 25.0% |
! | TAAAAACTTGAATGTTAGCT+TGG | - | chr3_1:83850361-83850380 | Msa0381630:intron | 25.0% |
GGAAGGAAGATGTTATTAAA+AGG | + | chr3_1:83846210-83846229 | None:intergenic | 30.0% | |
ATGCTTACATTGAAAATCTG+CGG | + | chr3_1:83846352-83846371 | None:intergenic | 30.0% | |
TAGGGTTTGGAAATAATTGA+AGG | + | chr3_1:83846416-83846435 | None:intergenic | 30.0% | |
GAATGGTCAATTGAAAAGAA+GGG | + | chr3_1:83846577-83846596 | None:intergenic | 30.0% | |
AGAATGGTCAATTGAAAAGA+AGG | + | chr3_1:83846578-83846597 | None:intergenic | 30.0% | |
!!! | ATATTTGGTTTGTGCTTTTC+AGG | - | chr3_1:83846610-83846629 | Msa0381630:CDS | 30.0% |
TTTATGCTAATTGTTTGGAG+CGG | - | chr3_1:83846993-83847012 | Msa0381630:CDS | 30.0% | |
GTGATCAAATCTCAATAGAT+AGG | + | chr3_1:83847069-83847088 | None:intergenic | 30.0% | |
GGACTTAATGACTCTAATAT+TGG | - | chr3_1:83847190-83847209 | Msa0381630:intron | 30.0% | |
ATGTTATACAGGAAGGAATA+AGG | - | chr3_1:83847495-83847514 | Msa0381630:CDS | 30.0% | |
TGTTATACAGGAAGGAATAA+GGG | - | chr3_1:83847496-83847515 | Msa0381630:CDS | 30.0% | |
GTCATGTGATTTCAATTTCT+TGG | - | chr3_1:83847730-83847749 | Msa0381630:CDS | 30.0% | |
ATGTGATTTCAATTTCTTGG+TGG | - | chr3_1:83847733-83847752 | Msa0381630:CDS | 30.0% | |
TGTGATTTCAATTTCTTGGT+GGG | - | chr3_1:83847734-83847753 | Msa0381630:CDS | 30.0% | |
AACTGTTGTATATTGATCAC+TGG | - | chr3_1:83847893-83847912 | Msa0381630:intron | 30.0% | |
ACTGTTGTATATTGATCACT+GGG | - | chr3_1:83847894-83847913 | Msa0381630:intron | 30.0% | |
! | GTAGATATCAGTTTTGCTAA+TGG | + | chr3_1:83848068-83848087 | None:intergenic | 30.0% |
! | TCATCTGTAATTTTGCGTAA+AGG | + | chr3_1:83848143-83848162 | None:intergenic | 30.0% |
! | TTTTCCCCTTATATGTTGTT+TGG | - | chr3_1:83848208-83848227 | Msa0381630:intron | 30.0% |
ATAGCCAAACAACATATAAG+GGG | + | chr3_1:83848215-83848234 | None:intergenic | 30.0% | |
CATAGCCAAACAACATATAA+GGG | + | chr3_1:83848216-83848235 | None:intergenic | 30.0% | |
ACATAGCCAAACAACATATA+AGG | + | chr3_1:83848217-83848236 | None:intergenic | 30.0% | |
AACAGTGTTACAGTTTAGAA+TGG | - | chr3_1:83848469-83848488 | Msa0381630:CDS | 30.0% | |
CAACATAGATATTTGAAGAG+AGG | + | chr3_1:83848566-83848585 | None:intergenic | 30.0% | |
CTCTCTTCAAATATCTATGT+TGG | - | chr3_1:83848564-83848583 | Msa0381630:intron | 30.0% | |
! | CCAAATTTAAGGTGACAAAA+TGG | + | chr3_1:83848757-83848776 | None:intergenic | 30.0% |
! | CCATTTTGTCACCTTAAATT+TGG | - | chr3_1:83848754-83848773 | Msa0381630:intron | 30.0% |
TCTTGTGTGATAGATTAAGA+AGG | - | chr3_1:83848796-83848815 | Msa0381630:intron | 30.0% | |
TTAAGAAGGATGGAATAACA+AGG | - | chr3_1:83848810-83848829 | Msa0381630:intron | 30.0% | |
!! | AGTAGTGGATATAGAAAACT+GGG | + | chr3_1:83848858-83848877 | None:intergenic | 30.0% |
! | AGTTTTCTATATCCACTACT+GGG | - | chr3_1:83848858-83848877 | Msa0381630:intron | 30.0% |
! | CAAGAGTTTATAATGGAAAC+AGG | + | chr3_1:83849054-83849073 | None:intergenic | 30.0% |
CTGTTTCCATTATAAACTCT+TGG | - | chr3_1:83849052-83849071 | Msa0381630:intron | 30.0% | |
AGAAGGTTATATTAGGTCAA+TGG | - | chr3_1:83849083-83849102 | Msa0381630:intron | 30.0% | |
AATACGCTTTCCTTAAAACT+CGG | - | chr3_1:83849174-83849193 | Msa0381630:intron | 30.0% | |
!!! | TTTTTTCTGAACCTGTTAGT+AGG | - | chr3_1:83849289-83849308 | Msa0381630:intron | 30.0% |
! | TTTTTCTGAACCTGTTAGTA+GGG | - | chr3_1:83849290-83849309 | Msa0381630:intron | 30.0% |
AGAAAAAAATTGGTATGCCA+CGG | + | chr3_1:83849362-83849381 | None:intergenic | 30.0% | |
!!! | ATGATATTTTTTAGTGCCCA+TGG | - | chr3_1:83849398-83849417 | Msa0381630:intron | 30.0% |
TGTACTGTTCAATTAATAGC+TGG | - | chr3_1:83849616-83849635 | Msa0381630:intron | 30.0% | |
GTTTGTATTCTTGCTTTCTT+TGG | - | chr3_1:83849638-83849657 | Msa0381630:intron | 30.0% | |
CCAATAAAAATGTCAGATAC+AGG | + | chr3_1:83849675-83849694 | None:intergenic | 30.0% | |
! | CCTGTATCTGACATTTTTAT+TGG | - | chr3_1:83849672-83849691 | Msa0381630:CDS | 30.0% |
CAATAAGCTATCGTAGTAAA+AGG | + | chr3_1:83849826-83849845 | None:intergenic | 30.0% | |
! | CTTTTACTACGATAGCTTAT+TGG | - | chr3_1:83849824-83849843 | Msa0381630:CDS | 30.0% |
TCTATGAAATCAAATTCAGG+TGG | + | chr3_1:83850224-83850243 | None:intergenic | 30.0% | |
!!! | GTATACTTCATTTTTTTCCC+TGG | - | chr3_1:83850269-83850288 | Msa0381630:exon | 30.0% |
GTTGTATAGATTAGTACAAG+TGG | + | chr3_1:83850421-83850440 | None:intergenic | 30.0% | |
GAACATATTCGTTCGTGATT+TGG | - | chr3_1:83846126-83846145 | Msa0381630:three_prime_UTR | 35.0% | |
TTGTAACAAGTCTACATCTC+AGG | - | chr3_1:83846686-83846705 | Msa0381630:intron | 35.0% | |
AGTAAGCTGCTCATTATAAG+TGG | + | chr3_1:83846799-83846818 | None:intergenic | 35.0% | |
CAACACACCAACTTTATCTT+GGG | + | chr3_1:83846844-83846863 | None:intergenic | 35.0% | |
GCGAAAAGATTAAAGAGGAA+AGG | + | chr3_1:83846909-83846928 | None:intergenic | 35.0% | |
GATCTGCGAAAAGATTAAAG+AGG | + | chr3_1:83846914-83846933 | None:intergenic | 35.0% | |
TAGATAGGCTCCTACTAATT+AGG | + | chr3_1:83847054-83847073 | None:intergenic | 35.0% | |
!! | CATCTGGATTCTTAGTTTGT+TGG | - | chr3_1:83847111-83847130 | Msa0381630:CDS | 35.0% |
!! | TCTAATATTGGCTTAGATCC+CGG | - | chr3_1:83847202-83847221 | Msa0381630:intron | 35.0% |
!! | TGTCAATCATGAGTTTTGGT+AGG | - | chr3_1:83847285-83847304 | Msa0381630:intron | 35.0% |
TAAGAATTGCTTCTCATGTG+AGG | - | chr3_1:83847343-83847362 | Msa0381630:intron | 35.0% | |
GTTATACAGGAAGGAATAAG+GGG | - | chr3_1:83847497-83847516 | Msa0381630:CDS | 35.0% | |
TTATACAGGAAGGAATAAGG+GGG | - | chr3_1:83847498-83847517 | Msa0381630:CDS | 35.0% | |
!!! | GGGTTTGCTTGTTTTATATG+TGG | - | chr3_1:83847519-83847538 | Msa0381630:CDS | 35.0% |
GAAATGCTAGAGATATGTCT+TGG | - | chr3_1:83847620-83847639 | Msa0381630:intron | 35.0% | |
! | AATAGAAGCATATGCTTCCT+TGG | + | chr3_1:83848108-83848127 | None:intergenic | 35.0% |
! | AAGGAAGCATATGCTTCTAT+TGG | - | chr3_1:83848107-83848126 | Msa0381630:intron | 35.0% |
CAAAAAAATTGAACTGCACC+TGG | + | chr3_1:83848166-83848185 | None:intergenic | 35.0% | |
TTACGTGTTAGTGTCATATC+TGG | - | chr3_1:83848334-83848353 | Msa0381630:intron | 35.0% | |
CTCTTCAAGAGAATACTTTG+TGG | - | chr3_1:83848403-83848422 | Msa0381630:intron | 35.0% | |
CAAATATCTATGTTGGGATG+CGG | - | chr3_1:83848571-83848590 | Msa0381630:intron | 35.0% | |
GAATTGCTTCTTCAGTGAAT+GGG | + | chr3_1:83848605-83848624 | None:intergenic | 35.0% | |
TGAATTGCTTCTTCAGTGAA+TGG | + | chr3_1:83848606-83848625 | None:intergenic | 35.0% | |
GTGTGATAGATTAAGAAGGA+TGG | - | chr3_1:83848800-83848819 | Msa0381630:intron | 35.0% | |
ATAGAAAACTGGGGATAAAG+AGG | + | chr3_1:83848848-83848867 | None:intergenic | 35.0% | |
!! | GTAGTGGATATAGAAAACTG+GGG | + | chr3_1:83848857-83848876 | None:intergenic | 35.0% |
!! | CAGTAGTGGATATAGAAAAC+TGG | + | chr3_1:83848859-83848878 | None:intergenic | 35.0% |
! | CAGTTTTCTATATCCACTAC+TGG | - | chr3_1:83848857-83848876 | Msa0381630:intron | 35.0% |
AACTCTTGGTATCAAAGAGA+AGG | - | chr3_1:83849066-83849085 | Msa0381630:intron | 35.0% | |
TTTCCTTAAAACTCGGTATC+CGG | - | chr3_1:83849181-83849200 | Msa0381630:intron | 35.0% | |
ATTCAATACAAGTGGATGGT+GGG | + | chr3_1:83849238-83849257 | None:intergenic | 35.0% | |
TATTCAATACAAGTGGATGG+TGG | + | chr3_1:83849239-83849258 | None:intergenic | 35.0% | |
ACGTATTCAATACAAGTGGA+TGG | + | chr3_1:83849242-83849261 | None:intergenic | 35.0% | |
TCCACTTGTATTGAATACGT+TGG | - | chr3_1:83849242-83849261 | Msa0381630:intron | 35.0% | |
TCCAACGTATTCAATACAAG+TGG | + | chr3_1:83849246-83849265 | None:intergenic | 35.0% | |
TGTATTGAATACGTTGGACA+TGG | - | chr3_1:83849248-83849267 | Msa0381630:intron | 35.0% | |
! | ATTTTGTAAGCCCTACTAAC+AGG | + | chr3_1:83849303-83849322 | None:intergenic | 35.0% |
GTAGGGCTTACAAAATTCAA+AGG | - | chr3_1:83849307-83849326 | Msa0381630:intron | 35.0% | |
TCAGTTATGTTGAGAATGCT+GGG | - | chr3_1:83849429-83849448 | Msa0381630:intron | 35.0% | |
ACTAGGACTTCATCTGTATA+TGG | + | chr3_1:83849740-83849759 | None:intergenic | 35.0% | |
GACTCTTGAAGAAATTGACA+TGG | - | chr3_1:83849919-83849938 | Msa0381630:CDS | 35.0% | |
AAGAAATTGACATGGAGTAC+AGG | - | chr3_1:83849927-83849946 | Msa0381630:intron | 35.0% | |
AGAAATTGACATGGAGTACA+GGG | - | chr3_1:83849928-83849947 | Msa0381630:intron | 35.0% | |
TTGAATCTGGCATCAAGAAT+TGG | - | chr3_1:83849960-83849979 | Msa0381630:intron | 35.0% | |
TGAATCTGGCATCAAGAATT+GGG | - | chr3_1:83849961-83849980 | Msa0381630:intron | 35.0% | |
GTCTTTATCCATATCTTCAG+AGG | + | chr3_1:83850092-83850111 | None:intergenic | 35.0% | |
! | TCTTGGCGAAGTATTTAACT+GGG | + | chr3_1:83850114-83850133 | None:intergenic | 35.0% |
! | ATCTTGGCGAAGTATTTAAC+TGG | + | chr3_1:83850115-83850134 | None:intergenic | 35.0% |
!!! | TACTTCGCCAAGATGTTTTT+TGG | - | chr3_1:83850121-83850140 | Msa0381630:intron | 35.0% |
! | CTGAACGCAGTTATCATTTT+GGG | + | chr3_1:83850178-83850197 | None:intergenic | 35.0% |
GTACAAGTGGTAAACTGTTT+GGG | + | chr3_1:83850408-83850427 | None:intergenic | 35.0% | |
AGTACAAGTGGTAAACTGTT+TGG | + | chr3_1:83850409-83850428 | None:intergenic | 35.0% | |
GAGTGCGTTCATAACTGAAA+TGG | + | chr3_1:83846282-83846301 | None:intergenic | 40.0% | |
AATCCGAGTAGCAAGTAACA+CGG | + | chr3_1:83846668-83846687 | None:intergenic | 40.0% | |
! | TCTGGTGCCAATTCTTGTAT+TGG | + | chr3_1:83846739-83846758 | None:intergenic | 40.0% |
TGAGCGAGAAACTAAGTTTC+TGG | + | chr3_1:83846757-83846776 | None:intergenic | 40.0% | |
GCAACACACCAACTTTATCT+TGG | + | chr3_1:83846845-83846864 | None:intergenic | 40.0% | |
AGGCTCCTACTAATTAGGAA+GGG | + | chr3_1:83847049-83847068 | None:intergenic | 40.0% | |
TAGGCTCCTACTAATTAGGA+AGG | + | chr3_1:83847050-83847069 | None:intergenic | 40.0% | |
TTGAGATTTGATCACTCAGC+TGG | - | chr3_1:83847074-83847093 | Msa0381630:CDS | 40.0% | |
TGTGCCTAGATTCCTAATTG+AGG | - | chr3_1:83847143-83847162 | Msa0381630:CDS | 40.0% | |
TGAGCCTCAATTAGGAATCT+AGG | + | chr3_1:83847150-83847169 | None:intergenic | 40.0% | |
AGATTGTGTGAGCCTCAATT+AGG | + | chr3_1:83847158-83847177 | None:intergenic | 40.0% | |
ACACAATCTTGTGTTTGTGC+TGG | - | chr3_1:83847169-83847188 | Msa0381630:intron | 40.0% | |
!! | ACAAGAGTGCTGCCATAATT+TGG | - | chr3_1:83847241-83847260 | Msa0381630:intron | 40.0% |
CTGCCATAATTTGGTAGGAT+GGG | - | chr3_1:83847250-83847269 | Msa0381630:intron | 40.0% | |
AATTGCTTCTCATGTGAGGA+TGG | - | chr3_1:83847347-83847366 | Msa0381630:intron | 40.0% | |
ATTGCTTCTCATGTGAGGAT+GGG | - | chr3_1:83847348-83847367 | Msa0381630:intron | 40.0% | |
!! | AACTAGTTCTGCAAGATGCT+TGG | - | chr3_1:83847376-83847395 | Msa0381630:intron | 40.0% |
!! | ACTAGTTCTGCAAGATGCTT+GGG | - | chr3_1:83847377-83847396 | Msa0381630:intron | 40.0% |
GTGTGTGTGTGATGTTATAC+AGG | - | chr3_1:83847484-83847503 | Msa0381630:CDS | 40.0% | |
GTGTGTGATGTTATACAGGA+AGG | - | chr3_1:83847488-83847507 | Msa0381630:CDS | 40.0% | |
TATACAGGAAGGAATAAGGG+GGG | - | chr3_1:83847499-83847518 | Msa0381630:CDS | 40.0% | |
TAGTGTGTTCTACACCACTT+TGG | + | chr3_1:83847559-83847578 | None:intergenic | 40.0% | |
AAAGTGGTGTAGAACACACT+AGG | - | chr3_1:83847558-83847577 | Msa0381630:intron | 40.0% | |
AGGCAGAATAGCAACAAACT+TGG | + | chr3_1:83847646-83847665 | None:intergenic | 40.0% | |
ATGGAATACATGGTTGTGCT+AGG | - | chr3_1:83847684-83847703 | Msa0381630:CDS | 40.0% | |
! | GTGGGTGCTGCAAATTATTT+GGG | - | chr3_1:83847752-83847771 | Msa0381630:intron | 40.0% |
!!! | TTGTGACGTTTTGGAGAGAT+TGG | - | chr3_1:83847807-83847826 | Msa0381630:intron | 40.0% |
!!! | TGTGACGTTTTGGAGAGATT+GGG | - | chr3_1:83847808-83847827 | Msa0381630:intron | 40.0% |
GGAGAAACCGAAACAATCTT+GGG | + | chr3_1:83848040-83848059 | None:intergenic | 40.0% | |
TGGAGAAACCGAAACAATCT+TGG | + | chr3_1:83848041-83848060 | None:intergenic | 40.0% | |
! | TCAGTTTTGCTAATGGTTGC+TGG | + | chr3_1:83848061-83848080 | None:intergenic | 40.0% |
CAAAACTGATATCTACGCTC+CGG | - | chr3_1:83848072-83848091 | Msa0381630:intron | 40.0% | |
AAAACTGATATCTACGCTCC+GGG | - | chr3_1:83848073-83848092 | Msa0381630:intron | 40.0% | |
GCATATGCTTCCTTGGATTT+AGG | + | chr3_1:83848101-83848120 | None:intergenic | 40.0% | |
GAAGCATATGCTTCTATTGG+AGG | - | chr3_1:83848110-83848129 | Msa0381630:intron | 40.0% | |
ACGCAAAATTACAGATGACC+AGG | - | chr3_1:83848145-83848164 | Msa0381630:intron | 40.0% | |
CTCTAGATTGAAGACATGTC+CGG | - | chr3_1:83848247-83848266 | Msa0381630:intron | 40.0% | |
!! | TGTATGTCGGTGTCAAATAC+CGG | + | chr3_1:83848269-83848288 | None:intergenic | 40.0% |
GTTAGTGTCATATCTGGTGT+AGG | - | chr3_1:83848340-83848359 | Msa0381630:intron | 40.0% | |
AACGTTCAGGTACTATGTAG+TGG | - | chr3_1:83848904-83848923 | Msa0381630:intron | 40.0% | |
!! | CATGCAAGGGTATTCATGAA+GGG | + | chr3_1:83848930-83848949 | None:intergenic | 40.0% |
!! | TCATGCAAGGGTATTCATGA+AGG | + | chr3_1:83848931-83848950 | None:intergenic | 40.0% |
GGGAAGATGCTTATTTGTCT+AGG | - | chr3_1:83849025-83849044 | Msa0381630:intron | 40.0% | |
AGAATAAAACTCACCTCCCT+TGG | + | chr3_1:83849147-83849166 | None:intergenic | 40.0% | |
! | TTTTACTCCAATCTGAACCG+TGG | - | chr3_1:83849342-83849361 | Msa0381630:intron | 40.0% |
ATAACTGACAGGAACACCAT+GGG | + | chr3_1:83849417-83849436 | None:intergenic | 40.0% | |
GCATTCTCAACATAACTGAC+AGG | + | chr3_1:83849428-83849447 | None:intergenic | 40.0% | |
GTCAGTTATGTTGAGAATGC+TGG | - | chr3_1:83849428-83849447 | Msa0381630:intron | 40.0% | |
CAGTTATGTTGAGAATGCTG+GGG | - | chr3_1:83849430-83849449 | Msa0381630:intron | 40.0% | |
ATGCAGGAATTGAAAGCTAG+AGG | - | chr3_1:83849494-83849513 | Msa0381630:intron | 40.0% | |
CTCAAGCTCAAATCAGAAGA+TGG | + | chr3_1:83849584-83849603 | None:intergenic | 40.0% | |
ATGGTTTCAACCACTCTACA+GGG | + | chr3_1:83849721-83849740 | None:intergenic | 40.0% | |
TATGGTTTCAACCACTCTAC+AGG | + | chr3_1:83849722-83849741 | None:intergenic | 40.0% | |
AAAGACTCTTCACACCTTTC+TGG | + | chr3_1:83849772-83849791 | None:intergenic | 40.0% | |
! | CTAATGATAGTGTACCTCAC+TGG | + | chr3_1:83849803-83849822 | None:intergenic | 40.0% |
AAGATCCATGATGAAGGAAG+GGG | + | chr3_1:83850011-83850030 | None:intergenic | 40.0% | |
CAAGATCCATGATGAAGGAA+GGG | + | chr3_1:83850012-83850031 | None:intergenic | 40.0% | |
ATCTGCAAGATCCATGATGA+AGG | + | chr3_1:83850017-83850036 | None:intergenic | 40.0% | |
! | CCTGAACGCAGTTATCATTT+TGG | + | chr3_1:83850179-83850198 | None:intergenic | 40.0% |
CCAAAATGATAACTGCGTTC+AGG | - | chr3_1:83850176-83850195 | Msa0381630:intron | 40.0% | |
CTGTAAAGGAGTAAAACCCA+GGG | + | chr3_1:83850289-83850308 | None:intergenic | 40.0% | |
TCTGTAAAGGAGTAAAACCC+AGG | + | chr3_1:83850290-83850309 | None:intergenic | 40.0% | |
! | GATGAAGGGATTGAGGGTAT+CGG | + | chr3_1:83846328-83846347 | None:intergenic | 45.0% |
TGAAAATCTGCGGCGATGAA+GGG | + | chr3_1:83846342-83846361 | None:intergenic | 45.0% | |
TTGAAAATCTGCGGCGATGA+AGG | + | chr3_1:83846343-83846362 | None:intergenic | 45.0% | |
! | GTTTGTTGAATTGCTGCTGC+TGG | + | chr3_1:83846555-83846574 | None:intergenic | 45.0% |
!! | TACCCGTGTTACTTGCTACT+CGG | - | chr3_1:83846662-83846681 | Msa0381630:intron | 45.0% |
ATCCGAGTAGCAAGTAACAC+GGG | + | chr3_1:83846667-83846686 | None:intergenic | 45.0% | |
!!! | GCATCCTTGTTTTTGTGTCC+TGG | - | chr3_1:83846708-83846727 | Msa0381630:intron | 45.0% |
! | ATTCTTGTATTGGTCGAGCC+AGG | + | chr3_1:83846729-83846748 | None:intergenic | 45.0% |
GGCTCGACCAATACAAGAAT+TGG | - | chr3_1:83846729-83846748 | Msa0381630:intron | 45.0% | |
! | ATGCTAATTGTTTGGAGCGG+AGG | - | chr3_1:83846996-83847015 | Msa0381630:CDS | 45.0% |
CTACTAATTAGGAAGGGGGT+AGG | + | chr3_1:83847043-83847062 | None:intergenic | 45.0% | |
CTACCCCCTTCCTAATTAGT+AGG | - | chr3_1:83847041-83847060 | Msa0381630:CDS | 45.0% | |
GCTCCTACTAATTAGGAAGG+GGG | + | chr3_1:83847047-83847066 | None:intergenic | 45.0% | |
GGCTCCTACTAATTAGGAAG+GGG | + | chr3_1:83847048-83847067 | None:intergenic | 45.0% | |
GGCTGATCTGATATTGCATC+TGG | - | chr3_1:83847095-83847114 | Msa0381630:CDS | 45.0% | |
! | GAGTGCTGCCATAATTTGGT+AGG | - | chr3_1:83847245-83847264 | Msa0381630:intron | 45.0% |
GCTGCCATAATTTGGTAGGA+TGG | - | chr3_1:83847249-83847268 | Msa0381630:intron | 45.0% | |
TCGCCCATCCTACCAAATTA+TGG | + | chr3_1:83847256-83847275 | None:intergenic | 45.0% | |
ATAATTTGGTAGGATGGGCG+AGG | - | chr3_1:83847255-83847274 | Msa0381630:intron | 45.0% | |
!! | TCATGAGTTTTGGTAGGTCG+TGG | - | chr3_1:83847291-83847310 | Msa0381630:intron | 45.0% |
TAGAACACACTAGGATGCCT+TGG | - | chr3_1:83847567-83847586 | Msa0381630:intron | 45.0% | |
! | GGTGGGTGCTGCAAATTATT+TGG | - | chr3_1:83847751-83847770 | Msa0381630:intron | 45.0% |
! | TGGGTTCTAACAGTAGAACC+TGG | - | chr3_1:83847771-83847790 | Msa0381630:intron | 45.0% |
! | GGGTTCTAACAGTAGAACCT+GGG | - | chr3_1:83847772-83847791 | Msa0381630:intron | 45.0% |
! | GGTTCTAACAGTAGAACCTG+GGG | - | chr3_1:83847773-83847792 | Msa0381630:intron | 45.0% |
GTTCTAACAGTAGAACCTGG+GGG | - | chr3_1:83847774-83847793 | Msa0381630:intron | 45.0% | |
! | TGGGCATGTTTGTGACGTTT+TGG | - | chr3_1:83847798-83847817 | Msa0381630:intron | 45.0% |
!!! | GTGACGTTTTGGAGAGATTG+GGG | - | chr3_1:83847809-83847828 | Msa0381630:intron | 45.0% |
CCAAAGAGAAGATAGACCAC+TGG | + | chr3_1:83847931-83847950 | None:intergenic | 45.0% | |
CCAGTGGTCTATCTTCTCTT+TGG | - | chr3_1:83847928-83847947 | Msa0381630:intron | 45.0% | |
TTCGGCTCCCAAGATTGTTT+CGG | - | chr3_1:83848030-83848049 | Msa0381630:intron | 45.0% | |
GCATATGCTTCTATTGGAGG+TGG | - | chr3_1:83848113-83848132 | Msa0381630:intron | 45.0% | |
GTTGTTTGGCTATGTAGCAC+TGG | - | chr3_1:83848222-83848241 | Msa0381630:intron | 45.0% | |
! | ATGGGTTCTGATGATCATGC+AGG | - | chr3_1:83848506-83848525 | Msa0381630:CDS | 45.0% |
ACTTGCACTTAAGAGGGCTT+TGG | - | chr3_1:83848530-83848549 | Msa0381630:CDS | 45.0% | |
!! | TAAGAGGGCTTTGGAAGCAA+AGG | - | chr3_1:83848539-83848558 | Msa0381630:intron | 45.0% |
!! | AAGAGGGCTTTGGAAGCAAA+GGG | - | chr3_1:83848540-83848559 | Msa0381630:intron | 45.0% |
! | TCGAGAGTTTTTCTGAGCCA+AGG | - | chr3_1:83849127-83849146 | Msa0381630:intron | 45.0% |
! | CGAGAGTTTTTCTGAGCCAA+GGG | - | chr3_1:83849128-83849147 | Msa0381630:intron | 45.0% |
! | CCTCGGAATAATCGGTTCTT+GGG | + | chr3_1:83849207-83849226 | None:intergenic | 45.0% |
CCAAGAACCGATTATTCCGA+GGG | - | chr3_1:83849205-83849224 | Msa0381630:intron | 45.0% | |
CAAGAACCGATTATTCCGAG+GGG | - | chr3_1:83849206-83849225 | Msa0381630:intron | 45.0% | |
ATTGGACCCCTCGGAATAAT+CGG | + | chr3_1:83849215-83849234 | None:intergenic | 45.0% | |
!! | ATACAAGTGGATGGTGGGAT+TGG | + | chr3_1:83849233-83849252 | None:intergenic | 45.0% |
CATAACTGACAGGAACACCA+TGG | + | chr3_1:83849418-83849437 | None:intergenic | 45.0% | |
GGATCCATACCGAGATCAAA+TGG | - | chr3_1:83849451-83849470 | Msa0381630:intron | 45.0% | |
TCCATACCGAGATCAAATGG+AGG | - | chr3_1:83849454-83849473 | Msa0381630:intron | 45.0% | |
TCCTCCATTTGATCTCGGTA+TGG | + | chr3_1:83849458-83849477 | None:intergenic | 45.0% | |
TGCACTCCTCCATTTGATCT+CGG | + | chr3_1:83849463-83849482 | None:intergenic | 45.0% | |
GTGCATCTTCTTGATCATGC+AGG | - | chr3_1:83849478-83849497 | Msa0381630:intron | 45.0% | |
GATGAAGTCCTAGTTGAGCT+TGG | - | chr3_1:83849746-83849765 | Msa0381630:CDS | 45.0% | |
!! | GTCTTTTAGCTGTTCCAGTG+AGG | - | chr3_1:83849786-83849805 | Msa0381630:CDS | 45.0% |
TGACATGGAGTACAGGGAAT+TGG | - | chr3_1:83849934-83849953 | Msa0381630:intron | 45.0% | |
! | AGGGAATTGGCTCTTGAATC+TGG | - | chr3_1:83849947-83849966 | Msa0381630:intron | 45.0% |
GCAAGATCCATGATGAAGGA+AGG | + | chr3_1:83850013-83850032 | None:intergenic | 45.0% | |
CATCATGGATCTTGCAGATG+CGG | - | chr3_1:83850018-83850037 | Msa0381630:intron | 45.0% | |
GCATTTATTGCTGCTGCTGA+TGG | + | chr3_1:83850058-83850077 | None:intergenic | 45.0% | |
!! | TATCTTCAGAGGTGCTGGTA+GGG | + | chr3_1:83850081-83850100 | None:intergenic | 45.0% |
!! | ATATCTTCAGAGGTGCTGGT+AGG | + | chr3_1:83850082-83850101 | None:intergenic | 45.0% |
! | TACCAGCACCTCTGAAGATA+TGG | - | chr3_1:83850081-83850100 | Msa0381630:intron | 45.0% |
! | ATCCATATCTTCAGAGGTGC+TGG | + | chr3_1:83850086-83850105 | None:intergenic | 45.0% |
GTTGGCGTGTACGTCAAAGA+TGG | + | chr3_1:83846181-83846200 | None:intergenic | 50.0% | |
! | CGACGTTGGAAAGAGTTGGT+CGG | + | chr3_1:83846246-83846265 | None:intergenic | 50.0% |
ACGACGACGTTGGAAAGAGT+TGG | + | chr3_1:83846250-83846269 | None:intergenic | 50.0% | |
!! | AGGGATTGAGGGTATCGGTT+GGG | + | chr3_1:83846323-83846342 | None:intergenic | 50.0% |
!! | AAGGGATTGAGGGTATCGGT+TGG | + | chr3_1:83846324-83846343 | None:intergenic | 50.0% |
CGAGCCAGGACACAAAAACA+AGG | + | chr3_1:83846715-83846734 | None:intergenic | 50.0% | |
TTATCTTGGGCAGCGTGAGT+AGG | + | chr3_1:83846831-83846850 | None:intergenic | 50.0% | |
CACGCTGCCCAAGATAAAGT+TGG | - | chr3_1:83846834-83846853 | Msa0381630:CDS | 50.0% | |
!! | GGTGTGTTGCTTCTCAACCT+AGG | - | chr3_1:83846855-83846874 | Msa0381630:intron | 50.0% |
!! | GTGTTGCTTCTCAACCTAGG+TGG | - | chr3_1:83846858-83846877 | Msa0381630:intron | 50.0% |
!! | AGTTTTGGTAGGTCGTGGCA+AGG | - | chr3_1:83847296-83847315 | Msa0381630:intron | 50.0% |
TAACAGTAGAACCTGGGGGT+TGG | - | chr3_1:83847778-83847797 | Msa0381630:intron | 50.0% | |
AACAGTAGAACCTGGGGGTT+GGG | - | chr3_1:83847779-83847798 | Msa0381630:intron | 50.0% | |
CTTCCTTGGATTTAGGAGCC+CGG | + | chr3_1:83848094-83848113 | None:intergenic | 50.0% | |
TGCAGGCACTTGCACTTAAG+AGG | - | chr3_1:83848523-83848542 | Msa0381630:CDS | 50.0% | |
GCAGGCACTTGCACTTAAGA+GGG | - | chr3_1:83848524-83848543 | Msa0381630:CDS | 50.0% | |
TCTATGTTGGGATGCGGTAC+TGG | - | chr3_1:83848577-83848596 | Msa0381630:intron | 50.0% | |
GGATGGAATAACAAGGCTCG+TGG | - | chr3_1:83848817-83848836 | Msa0381630:intron | 50.0% | |
ACTGATGCTTGACCCAGTAG+TGG | + | chr3_1:83848873-83848892 | None:intergenic | 50.0% | |
TGGGTCAAGCATCAGTGTTC+TGG | - | chr3_1:83848877-83848896 | Msa0381630:intron | 50.0% | |
!! | GTGTTCTGGAGCAAACGTTC+AGG | - | chr3_1:83848891-83848910 | Msa0381630:intron | 50.0% |
! | GAGTTTTTCTGAGCCAAGGG+AGG | - | chr3_1:83849131-83849150 | Msa0381630:intron | 50.0% |
! | GGAATAATCGGTTCTTGGGC+CGG | + | chr3_1:83849203-83849222 | None:intergenic | 50.0% |
CCCAAGAACCGATTATTCCG+AGG | - | chr3_1:83849204-83849223 | Msa0381630:intron | 50.0% | |
! | CCCTCGGAATAATCGGTTCT+TGG | + | chr3_1:83849208-83849227 | None:intergenic | 50.0% |
TGGTATGCCACGGTTCAGAT+TGG | + | chr3_1:83849352-83849371 | None:intergenic | 50.0% | |
TGAGCACGCTCTTGCTTATC+AGG | - | chr3_1:83849526-83849545 | Msa0381630:intron | 50.0% | |
GATTTGAGCTTGAGCAGAGC+TGG | - | chr3_1:83849590-83849609 | Msa0381630:intron | 50.0% | |
! | ATGGATTGCCAGAGTCGAGT+GGG | - | chr3_1:83849695-83849714 | Msa0381630:CDS | 50.0% |
! | CTTTCTGGCCAAGCTCAACT+AGG | + | chr3_1:83849757-83849776 | None:intergenic | 50.0% |
CTAGTTGAGCTTGGCCAGAA+AGG | - | chr3_1:83849755-83849774 | Msa0381630:CDS | 50.0% | |
TCTCACCCCTTCCTTCATCA+TGG | - | chr3_1:83850003-83850022 | Msa0381630:intron | 50.0% | |
!! | ATCTTCAGAGGTGCTGGTAG+GGG | + | chr3_1:83850080-83850099 | None:intergenic | 50.0% |
! | TGGAAAGAGTTGGTCGGCGT+GGG | + | chr3_1:83846240-83846259 | None:intergenic | 55.0% |
! | TTGGAAAGAGTTGGTCGGCG+TGG | + | chr3_1:83846241-83846260 | None:intergenic | 55.0% |
TGCGGCGATGAAGGGATTGA+GGG | + | chr3_1:83846334-83846353 | None:intergenic | 55.0% | |
TGAACATCGTCCAGCGTCTC+TGG | + | chr3_1:83846885-83846904 | None:intergenic | 55.0% | |
CTGGGTACATCTTGTGCCAG+TGG | - | chr3_1:83847912-83847931 | Msa0381630:intron | 55.0% | |
! | GGGCCGGATACCGAGTTTTA+AGG | + | chr3_1:83849187-83849206 | None:intergenic | 55.0% |
!! | GATGGATTGCCAGAGTCGAG+TGG | - | chr3_1:83849694-83849713 | Msa0381630:CDS | 55.0% |
CAAGAATTGGGCACGTGTCC+CGG | - | chr3_1:83849973-83849992 | Msa0381630:intron | 55.0% | |
CTGCGGCGATGAAGGGATTG+AGG | + | chr3_1:83846335-83846354 | None:intergenic | 60.0% | |
TTGGTAGGTCGTGGCAAGGC+TGG | - | chr3_1:83847300-83847319 | Msa0381630:intron | 60.0% | |
CACAAACATGCCCAACCCCC+AGG | + | chr3_1:83847792-83847811 | None:intergenic | 60.0% | |
GCTCCGGGCTCCTAAATCCA+AGG | - | chr3_1:83848088-83848107 | Msa0381630:intron | 60.0% | |
!! | GATGGTGGGATTGGACCCCT+CGG | + | chr3_1:83849224-83849243 | None:intergenic | 60.0% |
AAGGGGTGAGACCAAGAGCC+GGG | + | chr3_1:83849994-83850013 | None:intergenic | 60.0% | |
GAAGGGGTGAGACCAAGAGC+CGG | + | chr3_1:83849995-83850014 | None:intergenic | 60.0% | |
TCGGCGTGGGTGAGGAAGGA+AGG | + | chr3_1:83846227-83846246 | None:intergenic | 65.0% | |
TTGGTCGGCGTGGGTGAGGA+AGG | + | chr3_1:83846231-83846250 | None:intergenic | 65.0% | |
! | AGAGTTGGTCGGCGTGGGTG+AGG | + | chr3_1:83846235-83846254 | None:intergenic | 65.0% |
GACGACGACGACGACGACGT+TGG | + | chr3_1:83846260-83846279 | None:intergenic | 65.0% | |
CCAGCGTCTCTGGTCCACCT+AGG | + | chr3_1:83846875-83846894 | None:intergenic | 65.0% | |
CCTAGGTGGACCAGAGACGC+TGG | - | chr3_1:83846872-83846891 | Msa0381630:intron | 65.0% | |
CTACAGGGCCCACTCGACTC+TGG | + | chr3_1:83849706-83849725 | None:intergenic | 65.0% | |
GTCGAGTGGGCCCTGTAGAG+TGG | - | chr3_1:83849708-83849727 | Msa0381630:CDS | 65.0% | |
GGTCGTGGCAAGGCTGGAGC+AGG | - | chr3_1:83847306-83847325 | Msa0381630:intron | 70.0% | |
TGGGCACGTGTCCCGGCTCT+TGG | - | chr3_1:83849980-83849999 | Msa0381630:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 83846123 | 83850451 | 83846123 | ID=Msa0381630;Name=Msa0381630 |
chr3_1 | mRNA | 83846123 | 83850451 | 83846123 | ID=Msa0381630-mRNA-1;Parent=Msa0381630;Name=Msa0381630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|0.88|0.9|1|0.88|0.8|10|238|497 |
chr3_1 | exon | 83846123 | 83846676 | 83846123 | ID=Msa0381630-mRNA-1:exon:21704;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83846767 | 83846867 | 83846767 | ID=Msa0381630-mRNA-1:exon:21703;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83846958 | 83847179 | 83846958 | ID=Msa0381630-mRNA-1:exon:21702;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83847422 | 83847548 | 83847422 | ID=Msa0381630-mRNA-1:exon:21701;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83847662 | 83847765 | 83847662 | ID=Msa0381630-mRNA-1:exon:21700;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83847945 | 83848046 | 83847945 | ID=Msa0381630-mRNA-1:exon:21699;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83848408 | 83848551 | 83848408 | ID=Msa0381630-mRNA-1:exon:21698;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83849639 | 83849942 | 83849639 | ID=Msa0381630-mRNA-1:exon:21697;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83850211 | 83850342 | 83850211 | ID=Msa0381630-mRNA-1:exon:21696;Parent=Msa0381630-mRNA-1 |
chr3_1 | exon | 83850364 | 83850451 | 83850364 | ID=Msa0381630-mRNA-1:exon:21695;Parent=Msa0381630-mRNA-1 |
chr3_1 | five_prime_UTR | 83850364 | 83850451 | 83850364 | ID=Msa0381630-mRNA-1:five_prime_utr;Parent=Msa0381630-mRNA-1 |
chr3_1 | five_prime_UTR | 83850285 | 83850342 | 83850285 | ID=Msa0381630-mRNA-1:five_prime_utr;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83850211 | 83850284 | 83850211 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83849639 | 83849942 | 83849639 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83848408 | 83848551 | 83848408 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83847945 | 83848046 | 83847945 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83847662 | 83847765 | 83847662 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83847422 | 83847548 | 83847422 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83846958 | 83847179 | 83846958 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83846767 | 83846867 | 83846767 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | CDS | 83846361 | 83846676 | 83846361 | ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1 |
chr3_1 | three_prime_UTR | 83846123 | 83846360 | 83846123 | ID=Msa0381630-mRNA-1:three_prime_utr;Parent=Msa0381630-mRNA-1 |
Gene Sequence |
Protein sequence |