AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381630 MtrunA17_Chr3g0135611 92.354 497 12 3 1 497 1 471 0.0 932
Msa0381630 MtrunA17_Chr4g0008821 84.274 496 44 3 2 497 13 474 0.0 812
Msa0381630 MtrunA17_Chr3g0131031 58.980 451 154 4 4 451 22 444 0.0 521
Msa0381630 MtrunA17_Chr8g0385271 58.465 443 154 3 10 451 31 444 0.0 517
Msa0381630 MtrunA17_Chr7g0235891 61.538 52 20 0 400 451 88 139 1.77e-13 67.8
Msa0381630 MtrunA17_Chr4g0045871 64.444 45 14 1 414 456 5 49 8.02e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381630 AT5G26030.1 64.435 478 135 7 21 494 19 465 0.0 610
Msa0381630 AT5G26030.2 64.435 478 135 7 21 494 19 465 0.0 610
Msa0381630 AT2G30390.1 66.667 354 95 1 98 451 100 430 1.43e-172 496
Msa0381630 AT2G30390.2 64.835 364 95 2 98 451 100 440 2.29e-169 488

Find 145 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACTCTTCACACCTTTC+TGG 0.158781 3_1:+83846783 None:intergenic
CCTGAACGCAGTTATCATTT+TGG 0.188485 3_1:+83846376 None:intergenic
GCATATGCTTCCTTGGATTT+AGG 0.213761 3_1:+83848454 None:intergenic
TGAGCACGCTCTTGCTTATC+AGG 0.255136 3_1:-83847026 Msa0381630:CDS
GAACATATTCGTTCGTGATT+TGG 0.259393 3_1:-83850426 Msa0381630:five_prime_UTR
AGATGTTATTAAAAGGAAAA+TGG 0.299797 3_1:+83850352 None:intergenic
ATCTTGGCGAAGTATTTAAC+TGG 0.311532 3_1:+83846440 None:intergenic
ACTAGGACTTCATCTGTATA+TGG 0.311851 3_1:+83846815 None:intergenic
TGAGCGAGAAACTAAGTTTC+TGG 0.314149 3_1:+83849798 None:intergenic
TGGGTCAAGCATCAGTGTTC+TGG 0.320253 3_1:-83847675 Msa0381630:CDS
TTGAATCTGGCATCAAGAAT+TGG 0.321498 3_1:-83846592 Msa0381630:CDS
TTGATACCAAGAGTTTATAA+TGG 0.330575 3_1:+83847494 None:intergenic
ACATCTATGAAATCAAATTC+AGG 0.348405 3_1:+83846328 None:intergenic
AGTACAAGTGGTAAACTGTT+TGG 0.352485 3_1:+83846146 None:intergenic
TGGGCACGTGTCCCGGCTCT+TGG 0.364586 3_1:-83846572 Msa0381630:CDS
TCTGGTGCCAATTCTTGTAT+TGG 0.377066 3_1:+83849816 None:intergenic
ATCAAAGAGAAGGTTATATT+AGG 0.378881 3_1:-83847476 Msa0381630:CDS
GGCTCGACCAATACAAGAAT+TGG 0.380637 3_1:-83849823 Msa0381630:CDS
TACCAGCACCTCTGAAGATA+TGG 0.387408 3_1:-83846471 Msa0381630:CDS
GCAACACACCAACTTTATCT+TGG 0.387419 3_1:+83849710 None:intergenic
TTCGGCTCCCAAGATTGTTT+CGG 0.387788 3_1:-83848522 Msa0381630:CDS
AGGGAATTGGCTCTTGAATC+TGG 0.388268 3_1:-83846605 Msa0381630:CDS
CAGTAGTGGATATAGAAAAC+TGG 0.391052 3_1:+83847696 None:intergenic
AAGGAAGCATATGCTTCTAT+TGG 0.393699 3_1:-83848445 Msa0381630:CDS
GATTTGAGCTTGAGCAGAGC+TGG 0.405773 3_1:-83846962 Msa0381630:CDS
GTACAAGTGGTAAACTGTTT+GGG 0.408812 3_1:+83846147 None:intergenic
AATAGAAGCATATGCTTCCT+TGG 0.409366 3_1:+83848447 None:intergenic
TGGAGAAACCGAAACAATCT+TGG 0.415074 3_1:+83848514 None:intergenic
CAAGAGTTTATAATGGAAAC+AGG 0.416911 3_1:+83847501 None:intergenic
TGAATCTGGCATCAAGAATT+GGG 0.420289 3_1:-83846591 Msa0381630:CDS
TGCAGGCACTTGCACTTAAG+AGG 0.422306 3_1:-83848029 Msa0381630:intron
TGAACATCGTCCAGCGTCTC+TGG 0.424583 3_1:+83849670 None:intergenic
CCAAAATGATAACTGCGTTC+AGG 0.426212 3_1:-83846376 Msa0381630:CDS
TTGAAAATCTGCGGCGATGA+AGG 0.429694 3_1:+83850212 None:intergenic
TGACATGGAGTACAGGGAAT+TGG 0.432816 3_1:-83846618 Msa0381630:CDS
GTGTTCTGGAGCAAACGTTC+AGG 0.435038 3_1:-83847661 Msa0381630:intron
CTGTTTCCATTATAAACTCT+TGG 0.436093 3_1:-83847500 Msa0381630:CDS
TCTATGTTGGGATGCGGTAC+TGG 0.440002 3_1:-83847975 Msa0381630:CDS
ATCCATATCTTCAGAGGTGC+TGG 0.440328 3_1:+83846469 None:intergenic
CTCTCTTCAAATATCTATGT+TGG 0.442020 3_1:-83847988 Msa0381630:CDS
CAAGAATTGGGCACGTGTCC+CGG 0.442821 3_1:-83846579 Msa0381630:CDS
TATGGTTTCAACCACTCTAC+AGG 0.443522 3_1:+83846833 None:intergenic
GTCAGTTATGTTGAGAATGC+TGG 0.450633 3_1:-83847124 Msa0381630:CDS
ACTTGCACTTAAGAGGGCTT+TGG 0.451923 3_1:-83848022 Msa0381630:CDS
GAGTGCGTTCATAACTGAAA+TGG 0.452304 3_1:+83850273 None:intergenic
TCTCACCCCTTCCTTCATCA+TGG 0.453039 3_1:-83846549 Msa0381630:CDS
CAACACACCAACTTTATCTT+GGG 0.457672 3_1:+83849711 None:intergenic
AAGAAATTGACATGGAGTAC+AGG 0.459008 3_1:-83846625 Msa0381630:CDS
TCTCTTCAAATATCTATGTT+GGG 0.463786 3_1:-83847987 Msa0381630:CDS
TGAATTGCTTCTTCAGTGAA+TGG 0.469168 3_1:+83847949 None:intergenic
GGGAAGATGCTTATTTGTCT+AGG 0.470752 3_1:-83847527 Msa0381630:CDS
AAGGGGTGAGACCAAGAGCC+GGG 0.475278 3_1:+83846561 None:intergenic
GCATTTATTGCTGCTGCTGA+TGG 0.484929 3_1:+83846497 None:intergenic
TATTGATATAGGATATCATT+CGG 0.487615 3_1:-83848540 Msa0381630:intron
ATTCTTGTATTGGTCGAGCC+AGG 0.487791 3_1:+83849826 None:intergenic
AGAGTTGGTCGGCGTGGGTG+AGG 0.491302 3_1:+83850320 None:intergenic
TATCTTCAGAGGTGCTGGTA+GGG 0.493651 3_1:+83846474 None:intergenic
GGATCCATACCGAGATCAAA+TGG 0.499443 3_1:-83847101 Msa0381630:CDS
CTGCGGCGATGAAGGGATTG+AGG 0.499797 3_1:+83850220 None:intergenic
AGAATAAAACTCACCTCCCT+TGG 0.499931 3_1:+83847408 None:intergenic
CTCAAGCTCAAATCAGAAGA+TGG 0.505920 3_1:+83846971 None:intergenic
TTGTAACAAGTCTACATCTC+AGG 0.507679 3_1:-83849866 Msa0381630:CDS
AGAAGGTTATATTAGGTCAA+TGG 0.510506 3_1:-83847469 Msa0381630:CDS
GAAGGGGTGAGACCAAGAGC+CGG 0.510828 3_1:+83846560 None:intergenic
CTTTCTGGCCAAGCTCAACT+AGG 0.513801 3_1:+83846798 None:intergenic
GAAGCATATGCTTCTATTGG+AGG 0.515453 3_1:-83848442 Msa0381630:CDS
TCCTCCATTTGATCTCGGTA+TGG 0.518447 3_1:+83847097 None:intergenic
GGAGAAACCGAAACAATCTT+GGG 0.521215 3_1:+83848515 None:intergenic
TACCCGTGTTACTTGCTACT+CGG 0.521616 3_1:-83849890 Msa0381630:CDS
CAAAACTGATATCTACGCTC+CGG 0.521810 3_1:-83848480 Msa0381630:CDS
ATCTTCAGAGGTGCTGGTAG+GGG 0.525267 3_1:+83846475 None:intergenic
AGGGATTGAGGGTATCGGTT+GGG 0.525449 3_1:+83850232 None:intergenic
CGTATGTATTATATCTGTAA+AGG 0.526845 3_1:+83846252 None:intergenic
ATAGAAAACTGGGGATAAAG+AGG 0.527953 3_1:+83847707 None:intergenic
TTGGAAAGAGTTGGTCGGCG+TGG 0.532518 3_1:+83850314 None:intergenic
TCAGTTATGTTGAGAATGCT+GGG 0.533403 3_1:-83847123 Msa0381630:CDS
TAAGAGGGCTTTGGAAGCAA+AGG 0.534948 3_1:-83848013 Msa0381630:CDS
GTTATTAAAAGGAAAATGGT+TGG 0.536432 3_1:+83850356 None:intergenic
TGAAAATCTGCGGCGATGAA+GGG 0.539351 3_1:+83850213 None:intergenic
GTCTTTATCCATATCTTCAG+AGG 0.540172 3_1:+83846463 None:intergenic
GTTGTATAGATTAGTACAAG+TGG 0.541939 3_1:+83846134 None:intergenic
AAAACTGATATCTACGCTCC+GGG 0.542299 3_1:-83848479 Msa0381630:CDS
AAGAGGGCTTTGGAAGCAAA+GGG 0.543258 3_1:-83848012 Msa0381630:CDS
GGTGTGTTGCTTCTCAACCT+AGG 0.543801 3_1:-83849697 Msa0381630:CDS
TCTGTAAAGGAGTAAAACCC+AGG 0.545654 3_1:+83846265 None:intergenic
AGTAAGCTGCTCATTATAAG+TGG 0.545992 3_1:+83849756 None:intergenic
CTAGTTGAGCTTGGCCAGAA+AGG 0.546122 3_1:-83846797 Msa0381630:CDS
TGCGGCGATGAAGGGATTGA+GGG 0.547203 3_1:+83850221 None:intergenic
GAATTGCTTCTTCAGTGAAT+GGG 0.548173 3_1:+83847950 None:intergenic
GCAAGATCCATGATGAAGGA+AGG 0.554278 3_1:+83846542 None:intergenic
TGGAAAGAGTTGGTCGGCGT+GGG 0.554554 3_1:+83850315 None:intergenic
AACTCTTGGTATCAAAGAGA+AGG 0.555055 3_1:-83847486 Msa0381630:CDS
TGCACTCCTCCATTTGATCT+CGG 0.555763 3_1:+83847092 None:intergenic
AGTAGTGGATATAGAAAACT+GGG 0.558376 3_1:+83847697 None:intergenic
GTGTGATAGATTAAGAAGGA+TGG 0.561861 3_1:-83847752 Msa0381630:intron
ATCTGCAAGATCCATGATGA+AGG 0.564670 3_1:+83846538 None:intergenic
TTATCTTGGGCAGCGTGAGT+AGG 0.565197 3_1:+83849724 None:intergenic
CAAGATCCATGATGAAGGAA+GGG 0.567383 3_1:+83846543 None:intergenic
AAGGGATTGAGGGTATCGGT+TGG 0.567491 3_1:+83850231 None:intergenic
GATGAAGTCCTAGTTGAGCT+TGG 0.570100 3_1:-83846806 Msa0381630:CDS
CAAATATCTATGTTGGGATG+CGG 0.570330 3_1:-83847981 Msa0381630:CDS
CTTCCTTGGATTTAGGAGCC+CGG 0.570429 3_1:+83848461 None:intergenic
GCAGGCACTTGCACTTAAGA+GGG 0.572079 3_1:-83848028 Msa0381630:intron
GCGAAAAGATTAAAGAGGAA+AGG 0.572094 3_1:+83849646 None:intergenic
GCATATGCTTCTATTGGAGG+TGG 0.572738 3_1:-83848439 Msa0381630:CDS
CCTAGGTGGACCAGAGACGC+TGG 0.572902 3_1:-83849680 Msa0381630:CDS
CTAATGATAGTGTACCTCAC+TGG 0.572939 3_1:+83846752 None:intergenic
CCAGCGTCTCTGGTCCACCT+AGG 0.573383 3_1:+83849680 None:intergenic
GTCGAGTGGGCCCTGTAGAG+TGG 0.575306 3_1:-83846844 Msa0381630:CDS
CACGCTGCCCAAGATAAAGT+TGG 0.577159 3_1:-83849718 Msa0381630:CDS
AGAAATTGACATGGAGTACA+GGG 0.578767 3_1:-83846624 Msa0381630:CDS
CATCATGGATCTTGCAGATG+CGG 0.579000 3_1:-83846534 Msa0381630:CDS
GTGCATCTTCTTGATCATGC+AGG 0.580701 3_1:-83847074 Msa0381630:CDS
ATATCTTCAGAGGTGCTGGT+AGG 0.580852 3_1:+83846473 None:intergenic
AAGATCCATGATGAAGGAAG+GGG 0.588954 3_1:+83846544 None:intergenic
GCATTCTCAACATAACTGAC+AGG 0.591932 3_1:+83847127 None:intergenic
TCTTGTGTGATAGATTAAGA+AGG 0.597670 3_1:-83847756 Msa0381630:intron
ATGCAGGAATTGAAAGCTAG+AGG 0.599634 3_1:-83847058 Msa0381630:CDS
CAACATAGATATTTGAAGAG+AGG 0.602336 3_1:+83847989 None:intergenic
GACTCTTGAAGAAATTGACA+TGG 0.603916 3_1:-83846633 Msa0381630:CDS
ACGACGACGTTGGAAAGAGT+TGG 0.607940 3_1:+83850305 None:intergenic
ACTGATGCTTGACCCAGTAG+TGG 0.613715 3_1:+83847682 None:intergenic
GCTCCGGGCTCCTAAATCCA+AGG 0.618946 3_1:-83848464 Msa0381630:CDS
ACGCAAAATTACAGATGACC+AGG 0.621225 3_1:-83848407 Msa0381630:intron
ATGGATTGCCAGAGTCGAGT+GGG 0.621399 3_1:-83846857 Msa0381630:intron
GATCTGCGAAAAGATTAAAG+AGG 0.632933 3_1:+83849641 None:intergenic
CATAACTGACAGGAACACCA+TGG 0.639549 3_1:+83847137 None:intergenic
GATGGATTGCCAGAGTCGAG+TGG 0.639812 3_1:-83846858 Msa0381630:intron
CTGTAAAGGAGTAAAACCCA+GGG 0.640643 3_1:+83846266 None:intergenic
ATGGTTTCAACCACTCTACA+GGG 0.643663 3_1:+83846834 None:intergenic
GTTGGCGTGTACGTCAAAGA+TGG 0.646233 3_1:+83850374 None:intergenic
TCTTGGCGAAGTATTTAACT+GGG 0.647791 3_1:+83846441 None:intergenic
ATAACTGACAGGAACACCAT+GGG 0.647820 3_1:+83847138 None:intergenic
GATGAAGGGATTGAGGGTAT+CGG 0.652118 3_1:+83850227 None:intergenic
GTGTTGCTTCTCAACCTAGG+TGG 0.663732 3_1:-83849694 Msa0381630:CDS
TCTATGAAATCAAATTCAGG+TGG 0.664584 3_1:+83846331 None:intergenic
GGATGGAATAACAAGGCTCG+TGG 0.666352 3_1:-83847735 Msa0381630:CDS
CGACGTTGGAAAGAGTTGGT+CGG 0.676199 3_1:+83850309 None:intergenic
ATCCGAGTAGCAAGTAACAC+GGG 0.692447 3_1:+83849888 None:intergenic
ATGCTTACATTGAAAATCTG+CGG 0.701447 3_1:+83850203 None:intergenic
AATCCGAGTAGCAAGTAACA+CGG 0.705787 3_1:+83849887 None:intergenic
TTAAGAAGGATGGAATAACA+AGG 0.706239 3_1:-83847742 Msa0381630:CDS
CAGTTATGTTGAGAATGCTG+GGG 0.717752 3_1:-83847122 Msa0381630:CDS
TCCATACCGAGATCAAATGG+AGG 0.721527 3_1:-83847098 Msa0381630:CDS
GTAGTGGATATAGAAAACTG+GGG 0.817706 3_1:+83847698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATT+TGG + chr3_1:83847419-83847438 None:intergenic 0.0%
!!! ATATTTTACATATATTAGAA+TGG + chr3_1:83846594-83846613 None:intergenic 10.0%
!! TCTAATATATGTAAAATATT+TGG - chr3_1:83846595-83846614 Msa0381630:CDS 10.0%
!!! ATTTATTGTATTTTATTGAT+TGG - chr3_1:83847837-83847856 Msa0381630:intron 10.0%
!!! CTGATAATTATTTTTAAAAA+TGG + chr3_1:83848311-83848330 None:intergenic 10.0%
!!! TTTATTTTATAGAAAATAAC+AGG + chr3_1:83848436-83848455 None:intergenic 10.0%
!! AAAAATAGAAAGAAAAAAAT+TGG + chr3_1:83849372-83849391 None:intergenic 10.0%
!! AGAAAAGTAAAAATGAAATA+GGG + chr3_1:83846434-83846453 None:intergenic 15.0%
!! AAGAAAAGTAAAAATGAAAT+AGG + chr3_1:83846435-83846454 None:intergenic 15.0%
!! TTGAAAATTGTTAAAAATTC+TGG - chr3_1:83847598-83847617 Msa0381630:intron 15.0%
!! ACATTTGATATAAAATGTAT+AGG + chr3_1:83848639-83848658 None:intergenic 15.0%
!! GTATCAATAACTTAAATAAA+TGG + chr3_1:83848697-83848716 None:intergenic 15.0%
!!! TTTATTTAAGTTATTGATAC+AGG - chr3_1:83848697-83848716 Msa0381630:intron 15.0%
!!! ACTGATATTATTTAATTTTC+AGG - chr3_1:83849004-83849023 Msa0381630:intron 15.0%
!!! CTGATATTATTTAATTTTCA+GGG - chr3_1:83849005-83849024 Msa0381630:intron 15.0%
!!! TTTTTTTCTTTCTATTTTTC+AGG - chr3_1:83849373-83849392 Msa0381630:intron 15.0%
!!! TGGTATTGACTTTTTTATTT+TGG - chr3_1:83846146-83846165 Msa0381630:three_prime_UTR 20.0%
!! AGATGTTATTAAAAGGAAAA+TGG + chr3_1:83846203-83846222 None:intergenic 20.0%
!!! TCATTTTTATGCTAATTGTT+TGG - chr3_1:83846988-83847007 Msa0381630:CDS 20.0%
!!! TGTTTACTTAAATTGTTTTC+CGG + chr3_1:83847224-83847243 None:intergenic 20.0%
!!! ATATTGTATAATGGAATACA+TGG - chr3_1:83847674-83847693 Msa0381630:CDS 20.0%
!! TATTGATATAGGATATCATT+CGG - chr3_1:83848012-83848031 Msa0381630:CDS 20.0%
!!! AATGGAAATAACATCTTTTA+TGG - chr3_1:83848487-83848506 Msa0381630:CDS 20.0%
!!! ATGGAAATAACATCTTTTAT+GGG - chr3_1:83848488-83848507 Msa0381630:CDS 20.0%
!! TAACAATAAACCCAAATTTA+AGG + chr3_1:83848768-83848787 None:intergenic 20.0%
! GTTATTAAAAGGAAAATGGT+TGG + chr3_1:83846199-83846218 None:intergenic 25.0%
! AGTAAAAATGAAATAGGGTT+TGG + chr3_1:83846429-83846448 None:intergenic 25.0%
! TGAGATTTATTGAGAGAATT+TGG + chr3_1:83846462-83846481 None:intergenic 25.0%
! AATTCTCTCAATAAATCTCA+TGG - chr3_1:83846462-83846481 Msa0381630:CDS 25.0%
! TGCAAAAAAAAGTAACATAC+AGG + chr3_1:83846936-83846955 None:intergenic 25.0%
!! GTTTACTTAAATTGTTTTCC+GGG + chr3_1:83847223-83847242 None:intergenic 25.0%
!! TAAATGTCAATCATGAGTTT+TGG - chr3_1:83847281-83847300 Msa0381630:intron 25.0%
! TGAATTATTCAATTCCAAAG+TGG - chr3_1:83847542-83847561 Msa0381630:intron 25.0%
!! AATTTTCAATGAAGATTCCA+AGG + chr3_1:83847587-83847606 None:intergenic 25.0%
! ATTATACAATATTCTAGTGC+AGG + chr3_1:83847666-83847685 None:intergenic 25.0%
! TGCACTAGAATATTGTATAA+TGG - chr3_1:83847665-83847684 Msa0381630:CDS 25.0%
!!! TTGTATTTTATTGATTGGTG+TGG - chr3_1:83847842-83847861 Msa0381630:intron 25.0%
!!! TGTATTTTATTGATTGGTGT+GGG - chr3_1:83847843-83847862 Msa0381630:intron 25.0%
! TCTGTTTATGTTTGATGTAA+TGG - chr3_1:83847866-83847885 Msa0381630:intron 25.0%
!! TATGTCTCTTGTATTGATAT+AGG - chr3_1:83848001-83848020 Msa0381630:CDS 25.0%
! GGGGAAAATAAAAATAAGAA+AGG + chr3_1:83848196-83848215 None:intergenic 25.0%
! TTGAATGTAATCATGTATGT+CGG + chr3_1:83848282-83848301 None:intergenic 25.0%
! TCTCTTCAAATATCTATGTT+GGG - chr3_1:83848565-83848584 Msa0381630:intron 25.0%
!! CATTTTGTCACCTTAAATTT+GGG - chr3_1:83848755-83848774 Msa0381630:intron 25.0%
! AAATTCTCTAAATCATGCAA+GGG + chr3_1:83848943-83848962 None:intergenic 25.0%
! AAAATTCTCTAAATCATGCA+AGG + chr3_1:83848944-83848963 None:intergenic 25.0%
! TTGATACCAAGAGTTTATAA+TGG + chr3_1:83849061-83849080 None:intergenic 25.0%
! ATCAAAGAGAAGGTTATATT+AGG - chr3_1:83849076-83849095 Msa0381630:intron 25.0%
! AGGTTCAGAAAAAAAATCAT+AGG + chr3_1:83849283-83849302 None:intergenic 25.0%
! TTTGTATTCTTGCTTTCTTT+GGG - chr3_1:83849639-83849658 Msa0381630:CDS 25.0%
! CAATAAAAATGTCAGATACA+GGG + chr3_1:83849674-83849693 None:intergenic 25.0%
!! TATCTGACATTTTTATTGGA+TGG - chr3_1:83849676-83849695 Msa0381630:CDS 25.0%
! AATTGAACCAAAAAACATCT+TGG + chr3_1:83850131-83850150 None:intergenic 25.0%
!!! GATGTTTTTTGGTTCAATTT+TGG - chr3_1:83850132-83850151 Msa0381630:intron 25.0%
! ACATCTATGAAATCAAATTC+AGG + chr3_1:83850227-83850246 None:intergenic 25.0%
!!! TATACTTCATTTTTTTCCCT+GGG - chr3_1:83850270-83850289 Msa0381630:exon 25.0%
! CGTATGTATTATATCTGTAA+AGG + chr3_1:83850303-83850322 None:intergenic 25.0%
! TAAAAACTTGAATGTTAGCT+TGG - chr3_1:83850361-83850380 Msa0381630:intron 25.0%
GGAAGGAAGATGTTATTAAA+AGG + chr3_1:83846210-83846229 None:intergenic 30.0%
ATGCTTACATTGAAAATCTG+CGG + chr3_1:83846352-83846371 None:intergenic 30.0%
TAGGGTTTGGAAATAATTGA+AGG + chr3_1:83846416-83846435 None:intergenic 30.0%
GAATGGTCAATTGAAAAGAA+GGG + chr3_1:83846577-83846596 None:intergenic 30.0%
AGAATGGTCAATTGAAAAGA+AGG + chr3_1:83846578-83846597 None:intergenic 30.0%
!!! ATATTTGGTTTGTGCTTTTC+AGG - chr3_1:83846610-83846629 Msa0381630:CDS 30.0%
TTTATGCTAATTGTTTGGAG+CGG - chr3_1:83846993-83847012 Msa0381630:CDS 30.0%
GTGATCAAATCTCAATAGAT+AGG + chr3_1:83847069-83847088 None:intergenic 30.0%
GGACTTAATGACTCTAATAT+TGG - chr3_1:83847190-83847209 Msa0381630:intron 30.0%
ATGTTATACAGGAAGGAATA+AGG - chr3_1:83847495-83847514 Msa0381630:CDS 30.0%
TGTTATACAGGAAGGAATAA+GGG - chr3_1:83847496-83847515 Msa0381630:CDS 30.0%
GTCATGTGATTTCAATTTCT+TGG - chr3_1:83847730-83847749 Msa0381630:CDS 30.0%
ATGTGATTTCAATTTCTTGG+TGG - chr3_1:83847733-83847752 Msa0381630:CDS 30.0%
TGTGATTTCAATTTCTTGGT+GGG - chr3_1:83847734-83847753 Msa0381630:CDS 30.0%
AACTGTTGTATATTGATCAC+TGG - chr3_1:83847893-83847912 Msa0381630:intron 30.0%
ACTGTTGTATATTGATCACT+GGG - chr3_1:83847894-83847913 Msa0381630:intron 30.0%
! GTAGATATCAGTTTTGCTAA+TGG + chr3_1:83848068-83848087 None:intergenic 30.0%
! TCATCTGTAATTTTGCGTAA+AGG + chr3_1:83848143-83848162 None:intergenic 30.0%
! TTTTCCCCTTATATGTTGTT+TGG - chr3_1:83848208-83848227 Msa0381630:intron 30.0%
ATAGCCAAACAACATATAAG+GGG + chr3_1:83848215-83848234 None:intergenic 30.0%
CATAGCCAAACAACATATAA+GGG + chr3_1:83848216-83848235 None:intergenic 30.0%
ACATAGCCAAACAACATATA+AGG + chr3_1:83848217-83848236 None:intergenic 30.0%
AACAGTGTTACAGTTTAGAA+TGG - chr3_1:83848469-83848488 Msa0381630:CDS 30.0%
CAACATAGATATTTGAAGAG+AGG + chr3_1:83848566-83848585 None:intergenic 30.0%
CTCTCTTCAAATATCTATGT+TGG - chr3_1:83848564-83848583 Msa0381630:intron 30.0%
! CCAAATTTAAGGTGACAAAA+TGG + chr3_1:83848757-83848776 None:intergenic 30.0%
! CCATTTTGTCACCTTAAATT+TGG - chr3_1:83848754-83848773 Msa0381630:intron 30.0%
TCTTGTGTGATAGATTAAGA+AGG - chr3_1:83848796-83848815 Msa0381630:intron 30.0%
TTAAGAAGGATGGAATAACA+AGG - chr3_1:83848810-83848829 Msa0381630:intron 30.0%
!! AGTAGTGGATATAGAAAACT+GGG + chr3_1:83848858-83848877 None:intergenic 30.0%
! AGTTTTCTATATCCACTACT+GGG - chr3_1:83848858-83848877 Msa0381630:intron 30.0%
! CAAGAGTTTATAATGGAAAC+AGG + chr3_1:83849054-83849073 None:intergenic 30.0%
CTGTTTCCATTATAAACTCT+TGG - chr3_1:83849052-83849071 Msa0381630:intron 30.0%
AGAAGGTTATATTAGGTCAA+TGG - chr3_1:83849083-83849102 Msa0381630:intron 30.0%
AATACGCTTTCCTTAAAACT+CGG - chr3_1:83849174-83849193 Msa0381630:intron 30.0%
!!! TTTTTTCTGAACCTGTTAGT+AGG - chr3_1:83849289-83849308 Msa0381630:intron 30.0%
! TTTTTCTGAACCTGTTAGTA+GGG - chr3_1:83849290-83849309 Msa0381630:intron 30.0%
AGAAAAAAATTGGTATGCCA+CGG + chr3_1:83849362-83849381 None:intergenic 30.0%
!!! ATGATATTTTTTAGTGCCCA+TGG - chr3_1:83849398-83849417 Msa0381630:intron 30.0%
TGTACTGTTCAATTAATAGC+TGG - chr3_1:83849616-83849635 Msa0381630:intron 30.0%
GTTTGTATTCTTGCTTTCTT+TGG - chr3_1:83849638-83849657 Msa0381630:intron 30.0%
CCAATAAAAATGTCAGATAC+AGG + chr3_1:83849675-83849694 None:intergenic 30.0%
! CCTGTATCTGACATTTTTAT+TGG - chr3_1:83849672-83849691 Msa0381630:CDS 30.0%
CAATAAGCTATCGTAGTAAA+AGG + chr3_1:83849826-83849845 None:intergenic 30.0%
! CTTTTACTACGATAGCTTAT+TGG - chr3_1:83849824-83849843 Msa0381630:CDS 30.0%
TCTATGAAATCAAATTCAGG+TGG + chr3_1:83850224-83850243 None:intergenic 30.0%
!!! GTATACTTCATTTTTTTCCC+TGG - chr3_1:83850269-83850288 Msa0381630:exon 30.0%
GTTGTATAGATTAGTACAAG+TGG + chr3_1:83850421-83850440 None:intergenic 30.0%
GAACATATTCGTTCGTGATT+TGG - chr3_1:83846126-83846145 Msa0381630:three_prime_UTR 35.0%
TTGTAACAAGTCTACATCTC+AGG - chr3_1:83846686-83846705 Msa0381630:intron 35.0%
AGTAAGCTGCTCATTATAAG+TGG + chr3_1:83846799-83846818 None:intergenic 35.0%
CAACACACCAACTTTATCTT+GGG + chr3_1:83846844-83846863 None:intergenic 35.0%
GCGAAAAGATTAAAGAGGAA+AGG + chr3_1:83846909-83846928 None:intergenic 35.0%
GATCTGCGAAAAGATTAAAG+AGG + chr3_1:83846914-83846933 None:intergenic 35.0%
TAGATAGGCTCCTACTAATT+AGG + chr3_1:83847054-83847073 None:intergenic 35.0%
!! CATCTGGATTCTTAGTTTGT+TGG - chr3_1:83847111-83847130 Msa0381630:CDS 35.0%
!! TCTAATATTGGCTTAGATCC+CGG - chr3_1:83847202-83847221 Msa0381630:intron 35.0%
!! TGTCAATCATGAGTTTTGGT+AGG - chr3_1:83847285-83847304 Msa0381630:intron 35.0%
TAAGAATTGCTTCTCATGTG+AGG - chr3_1:83847343-83847362 Msa0381630:intron 35.0%
GTTATACAGGAAGGAATAAG+GGG - chr3_1:83847497-83847516 Msa0381630:CDS 35.0%
TTATACAGGAAGGAATAAGG+GGG - chr3_1:83847498-83847517 Msa0381630:CDS 35.0%
!!! GGGTTTGCTTGTTTTATATG+TGG - chr3_1:83847519-83847538 Msa0381630:CDS 35.0%
GAAATGCTAGAGATATGTCT+TGG - chr3_1:83847620-83847639 Msa0381630:intron 35.0%
! AATAGAAGCATATGCTTCCT+TGG + chr3_1:83848108-83848127 None:intergenic 35.0%
! AAGGAAGCATATGCTTCTAT+TGG - chr3_1:83848107-83848126 Msa0381630:intron 35.0%
CAAAAAAATTGAACTGCACC+TGG + chr3_1:83848166-83848185 None:intergenic 35.0%
TTACGTGTTAGTGTCATATC+TGG - chr3_1:83848334-83848353 Msa0381630:intron 35.0%
CTCTTCAAGAGAATACTTTG+TGG - chr3_1:83848403-83848422 Msa0381630:intron 35.0%
CAAATATCTATGTTGGGATG+CGG - chr3_1:83848571-83848590 Msa0381630:intron 35.0%
GAATTGCTTCTTCAGTGAAT+GGG + chr3_1:83848605-83848624 None:intergenic 35.0%
TGAATTGCTTCTTCAGTGAA+TGG + chr3_1:83848606-83848625 None:intergenic 35.0%
GTGTGATAGATTAAGAAGGA+TGG - chr3_1:83848800-83848819 Msa0381630:intron 35.0%
ATAGAAAACTGGGGATAAAG+AGG + chr3_1:83848848-83848867 None:intergenic 35.0%
!! GTAGTGGATATAGAAAACTG+GGG + chr3_1:83848857-83848876 None:intergenic 35.0%
!! CAGTAGTGGATATAGAAAAC+TGG + chr3_1:83848859-83848878 None:intergenic 35.0%
! CAGTTTTCTATATCCACTAC+TGG - chr3_1:83848857-83848876 Msa0381630:intron 35.0%
AACTCTTGGTATCAAAGAGA+AGG - chr3_1:83849066-83849085 Msa0381630:intron 35.0%
TTTCCTTAAAACTCGGTATC+CGG - chr3_1:83849181-83849200 Msa0381630:intron 35.0%
ATTCAATACAAGTGGATGGT+GGG + chr3_1:83849238-83849257 None:intergenic 35.0%
TATTCAATACAAGTGGATGG+TGG + chr3_1:83849239-83849258 None:intergenic 35.0%
ACGTATTCAATACAAGTGGA+TGG + chr3_1:83849242-83849261 None:intergenic 35.0%
TCCACTTGTATTGAATACGT+TGG - chr3_1:83849242-83849261 Msa0381630:intron 35.0%
TCCAACGTATTCAATACAAG+TGG + chr3_1:83849246-83849265 None:intergenic 35.0%
TGTATTGAATACGTTGGACA+TGG - chr3_1:83849248-83849267 Msa0381630:intron 35.0%
! ATTTTGTAAGCCCTACTAAC+AGG + chr3_1:83849303-83849322 None:intergenic 35.0%
GTAGGGCTTACAAAATTCAA+AGG - chr3_1:83849307-83849326 Msa0381630:intron 35.0%
TCAGTTATGTTGAGAATGCT+GGG - chr3_1:83849429-83849448 Msa0381630:intron 35.0%
ACTAGGACTTCATCTGTATA+TGG + chr3_1:83849740-83849759 None:intergenic 35.0%
GACTCTTGAAGAAATTGACA+TGG - chr3_1:83849919-83849938 Msa0381630:CDS 35.0%
AAGAAATTGACATGGAGTAC+AGG - chr3_1:83849927-83849946 Msa0381630:intron 35.0%
AGAAATTGACATGGAGTACA+GGG - chr3_1:83849928-83849947 Msa0381630:intron 35.0%
TTGAATCTGGCATCAAGAAT+TGG - chr3_1:83849960-83849979 Msa0381630:intron 35.0%
TGAATCTGGCATCAAGAATT+GGG - chr3_1:83849961-83849980 Msa0381630:intron 35.0%
GTCTTTATCCATATCTTCAG+AGG + chr3_1:83850092-83850111 None:intergenic 35.0%
! TCTTGGCGAAGTATTTAACT+GGG + chr3_1:83850114-83850133 None:intergenic 35.0%
! ATCTTGGCGAAGTATTTAAC+TGG + chr3_1:83850115-83850134 None:intergenic 35.0%
!!! TACTTCGCCAAGATGTTTTT+TGG - chr3_1:83850121-83850140 Msa0381630:intron 35.0%
! CTGAACGCAGTTATCATTTT+GGG + chr3_1:83850178-83850197 None:intergenic 35.0%
GTACAAGTGGTAAACTGTTT+GGG + chr3_1:83850408-83850427 None:intergenic 35.0%
AGTACAAGTGGTAAACTGTT+TGG + chr3_1:83850409-83850428 None:intergenic 35.0%
GAGTGCGTTCATAACTGAAA+TGG + chr3_1:83846282-83846301 None:intergenic 40.0%
AATCCGAGTAGCAAGTAACA+CGG + chr3_1:83846668-83846687 None:intergenic 40.0%
! TCTGGTGCCAATTCTTGTAT+TGG + chr3_1:83846739-83846758 None:intergenic 40.0%
TGAGCGAGAAACTAAGTTTC+TGG + chr3_1:83846757-83846776 None:intergenic 40.0%
GCAACACACCAACTTTATCT+TGG + chr3_1:83846845-83846864 None:intergenic 40.0%
AGGCTCCTACTAATTAGGAA+GGG + chr3_1:83847049-83847068 None:intergenic 40.0%
TAGGCTCCTACTAATTAGGA+AGG + chr3_1:83847050-83847069 None:intergenic 40.0%
TTGAGATTTGATCACTCAGC+TGG - chr3_1:83847074-83847093 Msa0381630:CDS 40.0%
TGTGCCTAGATTCCTAATTG+AGG - chr3_1:83847143-83847162 Msa0381630:CDS 40.0%
TGAGCCTCAATTAGGAATCT+AGG + chr3_1:83847150-83847169 None:intergenic 40.0%
AGATTGTGTGAGCCTCAATT+AGG + chr3_1:83847158-83847177 None:intergenic 40.0%
ACACAATCTTGTGTTTGTGC+TGG - chr3_1:83847169-83847188 Msa0381630:intron 40.0%
!! ACAAGAGTGCTGCCATAATT+TGG - chr3_1:83847241-83847260 Msa0381630:intron 40.0%
CTGCCATAATTTGGTAGGAT+GGG - chr3_1:83847250-83847269 Msa0381630:intron 40.0%
AATTGCTTCTCATGTGAGGA+TGG - chr3_1:83847347-83847366 Msa0381630:intron 40.0%
ATTGCTTCTCATGTGAGGAT+GGG - chr3_1:83847348-83847367 Msa0381630:intron 40.0%
!! AACTAGTTCTGCAAGATGCT+TGG - chr3_1:83847376-83847395 Msa0381630:intron 40.0%
!! ACTAGTTCTGCAAGATGCTT+GGG - chr3_1:83847377-83847396 Msa0381630:intron 40.0%
GTGTGTGTGTGATGTTATAC+AGG - chr3_1:83847484-83847503 Msa0381630:CDS 40.0%
GTGTGTGATGTTATACAGGA+AGG - chr3_1:83847488-83847507 Msa0381630:CDS 40.0%
TATACAGGAAGGAATAAGGG+GGG - chr3_1:83847499-83847518 Msa0381630:CDS 40.0%
TAGTGTGTTCTACACCACTT+TGG + chr3_1:83847559-83847578 None:intergenic 40.0%
AAAGTGGTGTAGAACACACT+AGG - chr3_1:83847558-83847577 Msa0381630:intron 40.0%
AGGCAGAATAGCAACAAACT+TGG + chr3_1:83847646-83847665 None:intergenic 40.0%
ATGGAATACATGGTTGTGCT+AGG - chr3_1:83847684-83847703 Msa0381630:CDS 40.0%
! GTGGGTGCTGCAAATTATTT+GGG - chr3_1:83847752-83847771 Msa0381630:intron 40.0%
!!! TTGTGACGTTTTGGAGAGAT+TGG - chr3_1:83847807-83847826 Msa0381630:intron 40.0%
!!! TGTGACGTTTTGGAGAGATT+GGG - chr3_1:83847808-83847827 Msa0381630:intron 40.0%
GGAGAAACCGAAACAATCTT+GGG + chr3_1:83848040-83848059 None:intergenic 40.0%
TGGAGAAACCGAAACAATCT+TGG + chr3_1:83848041-83848060 None:intergenic 40.0%
! TCAGTTTTGCTAATGGTTGC+TGG + chr3_1:83848061-83848080 None:intergenic 40.0%
CAAAACTGATATCTACGCTC+CGG - chr3_1:83848072-83848091 Msa0381630:intron 40.0%
AAAACTGATATCTACGCTCC+GGG - chr3_1:83848073-83848092 Msa0381630:intron 40.0%
GCATATGCTTCCTTGGATTT+AGG + chr3_1:83848101-83848120 None:intergenic 40.0%
GAAGCATATGCTTCTATTGG+AGG - chr3_1:83848110-83848129 Msa0381630:intron 40.0%
ACGCAAAATTACAGATGACC+AGG - chr3_1:83848145-83848164 Msa0381630:intron 40.0%
CTCTAGATTGAAGACATGTC+CGG - chr3_1:83848247-83848266 Msa0381630:intron 40.0%
!! TGTATGTCGGTGTCAAATAC+CGG + chr3_1:83848269-83848288 None:intergenic 40.0%
GTTAGTGTCATATCTGGTGT+AGG - chr3_1:83848340-83848359 Msa0381630:intron 40.0%
AACGTTCAGGTACTATGTAG+TGG - chr3_1:83848904-83848923 Msa0381630:intron 40.0%
!! CATGCAAGGGTATTCATGAA+GGG + chr3_1:83848930-83848949 None:intergenic 40.0%
!! TCATGCAAGGGTATTCATGA+AGG + chr3_1:83848931-83848950 None:intergenic 40.0%
GGGAAGATGCTTATTTGTCT+AGG - chr3_1:83849025-83849044 Msa0381630:intron 40.0%
AGAATAAAACTCACCTCCCT+TGG + chr3_1:83849147-83849166 None:intergenic 40.0%
! TTTTACTCCAATCTGAACCG+TGG - chr3_1:83849342-83849361 Msa0381630:intron 40.0%
ATAACTGACAGGAACACCAT+GGG + chr3_1:83849417-83849436 None:intergenic 40.0%
GCATTCTCAACATAACTGAC+AGG + chr3_1:83849428-83849447 None:intergenic 40.0%
GTCAGTTATGTTGAGAATGC+TGG - chr3_1:83849428-83849447 Msa0381630:intron 40.0%
CAGTTATGTTGAGAATGCTG+GGG - chr3_1:83849430-83849449 Msa0381630:intron 40.0%
ATGCAGGAATTGAAAGCTAG+AGG - chr3_1:83849494-83849513 Msa0381630:intron 40.0%
CTCAAGCTCAAATCAGAAGA+TGG + chr3_1:83849584-83849603 None:intergenic 40.0%
ATGGTTTCAACCACTCTACA+GGG + chr3_1:83849721-83849740 None:intergenic 40.0%
TATGGTTTCAACCACTCTAC+AGG + chr3_1:83849722-83849741 None:intergenic 40.0%
AAAGACTCTTCACACCTTTC+TGG + chr3_1:83849772-83849791 None:intergenic 40.0%
! CTAATGATAGTGTACCTCAC+TGG + chr3_1:83849803-83849822 None:intergenic 40.0%
AAGATCCATGATGAAGGAAG+GGG + chr3_1:83850011-83850030 None:intergenic 40.0%
CAAGATCCATGATGAAGGAA+GGG + chr3_1:83850012-83850031 None:intergenic 40.0%
ATCTGCAAGATCCATGATGA+AGG + chr3_1:83850017-83850036 None:intergenic 40.0%
! CCTGAACGCAGTTATCATTT+TGG + chr3_1:83850179-83850198 None:intergenic 40.0%
CCAAAATGATAACTGCGTTC+AGG - chr3_1:83850176-83850195 Msa0381630:intron 40.0%
CTGTAAAGGAGTAAAACCCA+GGG + chr3_1:83850289-83850308 None:intergenic 40.0%
TCTGTAAAGGAGTAAAACCC+AGG + chr3_1:83850290-83850309 None:intergenic 40.0%
! GATGAAGGGATTGAGGGTAT+CGG + chr3_1:83846328-83846347 None:intergenic 45.0%
TGAAAATCTGCGGCGATGAA+GGG + chr3_1:83846342-83846361 None:intergenic 45.0%
TTGAAAATCTGCGGCGATGA+AGG + chr3_1:83846343-83846362 None:intergenic 45.0%
! GTTTGTTGAATTGCTGCTGC+TGG + chr3_1:83846555-83846574 None:intergenic 45.0%
!! TACCCGTGTTACTTGCTACT+CGG - chr3_1:83846662-83846681 Msa0381630:intron 45.0%
ATCCGAGTAGCAAGTAACAC+GGG + chr3_1:83846667-83846686 None:intergenic 45.0%
!!! GCATCCTTGTTTTTGTGTCC+TGG - chr3_1:83846708-83846727 Msa0381630:intron 45.0%
! ATTCTTGTATTGGTCGAGCC+AGG + chr3_1:83846729-83846748 None:intergenic 45.0%
GGCTCGACCAATACAAGAAT+TGG - chr3_1:83846729-83846748 Msa0381630:intron 45.0%
! ATGCTAATTGTTTGGAGCGG+AGG - chr3_1:83846996-83847015 Msa0381630:CDS 45.0%
CTACTAATTAGGAAGGGGGT+AGG + chr3_1:83847043-83847062 None:intergenic 45.0%
CTACCCCCTTCCTAATTAGT+AGG - chr3_1:83847041-83847060 Msa0381630:CDS 45.0%
GCTCCTACTAATTAGGAAGG+GGG + chr3_1:83847047-83847066 None:intergenic 45.0%
GGCTCCTACTAATTAGGAAG+GGG + chr3_1:83847048-83847067 None:intergenic 45.0%
GGCTGATCTGATATTGCATC+TGG - chr3_1:83847095-83847114 Msa0381630:CDS 45.0%
! GAGTGCTGCCATAATTTGGT+AGG - chr3_1:83847245-83847264 Msa0381630:intron 45.0%
GCTGCCATAATTTGGTAGGA+TGG - chr3_1:83847249-83847268 Msa0381630:intron 45.0%
TCGCCCATCCTACCAAATTA+TGG + chr3_1:83847256-83847275 None:intergenic 45.0%
ATAATTTGGTAGGATGGGCG+AGG - chr3_1:83847255-83847274 Msa0381630:intron 45.0%
!! TCATGAGTTTTGGTAGGTCG+TGG - chr3_1:83847291-83847310 Msa0381630:intron 45.0%
TAGAACACACTAGGATGCCT+TGG - chr3_1:83847567-83847586 Msa0381630:intron 45.0%
! GGTGGGTGCTGCAAATTATT+TGG - chr3_1:83847751-83847770 Msa0381630:intron 45.0%
! TGGGTTCTAACAGTAGAACC+TGG - chr3_1:83847771-83847790 Msa0381630:intron 45.0%
! GGGTTCTAACAGTAGAACCT+GGG - chr3_1:83847772-83847791 Msa0381630:intron 45.0%
! GGTTCTAACAGTAGAACCTG+GGG - chr3_1:83847773-83847792 Msa0381630:intron 45.0%
GTTCTAACAGTAGAACCTGG+GGG - chr3_1:83847774-83847793 Msa0381630:intron 45.0%
! TGGGCATGTTTGTGACGTTT+TGG - chr3_1:83847798-83847817 Msa0381630:intron 45.0%
!!! GTGACGTTTTGGAGAGATTG+GGG - chr3_1:83847809-83847828 Msa0381630:intron 45.0%
CCAAAGAGAAGATAGACCAC+TGG + chr3_1:83847931-83847950 None:intergenic 45.0%
CCAGTGGTCTATCTTCTCTT+TGG - chr3_1:83847928-83847947 Msa0381630:intron 45.0%
TTCGGCTCCCAAGATTGTTT+CGG - chr3_1:83848030-83848049 Msa0381630:intron 45.0%
GCATATGCTTCTATTGGAGG+TGG - chr3_1:83848113-83848132 Msa0381630:intron 45.0%
GTTGTTTGGCTATGTAGCAC+TGG - chr3_1:83848222-83848241 Msa0381630:intron 45.0%
! ATGGGTTCTGATGATCATGC+AGG - chr3_1:83848506-83848525 Msa0381630:CDS 45.0%
ACTTGCACTTAAGAGGGCTT+TGG - chr3_1:83848530-83848549 Msa0381630:CDS 45.0%
!! TAAGAGGGCTTTGGAAGCAA+AGG - chr3_1:83848539-83848558 Msa0381630:intron 45.0%
!! AAGAGGGCTTTGGAAGCAAA+GGG - chr3_1:83848540-83848559 Msa0381630:intron 45.0%
! TCGAGAGTTTTTCTGAGCCA+AGG - chr3_1:83849127-83849146 Msa0381630:intron 45.0%
! CGAGAGTTTTTCTGAGCCAA+GGG - chr3_1:83849128-83849147 Msa0381630:intron 45.0%
! CCTCGGAATAATCGGTTCTT+GGG + chr3_1:83849207-83849226 None:intergenic 45.0%
CCAAGAACCGATTATTCCGA+GGG - chr3_1:83849205-83849224 Msa0381630:intron 45.0%
CAAGAACCGATTATTCCGAG+GGG - chr3_1:83849206-83849225 Msa0381630:intron 45.0%
ATTGGACCCCTCGGAATAAT+CGG + chr3_1:83849215-83849234 None:intergenic 45.0%
!! ATACAAGTGGATGGTGGGAT+TGG + chr3_1:83849233-83849252 None:intergenic 45.0%
CATAACTGACAGGAACACCA+TGG + chr3_1:83849418-83849437 None:intergenic 45.0%
GGATCCATACCGAGATCAAA+TGG - chr3_1:83849451-83849470 Msa0381630:intron 45.0%
TCCATACCGAGATCAAATGG+AGG - chr3_1:83849454-83849473 Msa0381630:intron 45.0%
TCCTCCATTTGATCTCGGTA+TGG + chr3_1:83849458-83849477 None:intergenic 45.0%
TGCACTCCTCCATTTGATCT+CGG + chr3_1:83849463-83849482 None:intergenic 45.0%
GTGCATCTTCTTGATCATGC+AGG - chr3_1:83849478-83849497 Msa0381630:intron 45.0%
GATGAAGTCCTAGTTGAGCT+TGG - chr3_1:83849746-83849765 Msa0381630:CDS 45.0%
!! GTCTTTTAGCTGTTCCAGTG+AGG - chr3_1:83849786-83849805 Msa0381630:CDS 45.0%
TGACATGGAGTACAGGGAAT+TGG - chr3_1:83849934-83849953 Msa0381630:intron 45.0%
! AGGGAATTGGCTCTTGAATC+TGG - chr3_1:83849947-83849966 Msa0381630:intron 45.0%
GCAAGATCCATGATGAAGGA+AGG + chr3_1:83850013-83850032 None:intergenic 45.0%
CATCATGGATCTTGCAGATG+CGG - chr3_1:83850018-83850037 Msa0381630:intron 45.0%
GCATTTATTGCTGCTGCTGA+TGG + chr3_1:83850058-83850077 None:intergenic 45.0%
!! TATCTTCAGAGGTGCTGGTA+GGG + chr3_1:83850081-83850100 None:intergenic 45.0%
!! ATATCTTCAGAGGTGCTGGT+AGG + chr3_1:83850082-83850101 None:intergenic 45.0%
! TACCAGCACCTCTGAAGATA+TGG - chr3_1:83850081-83850100 Msa0381630:intron 45.0%
! ATCCATATCTTCAGAGGTGC+TGG + chr3_1:83850086-83850105 None:intergenic 45.0%
GTTGGCGTGTACGTCAAAGA+TGG + chr3_1:83846181-83846200 None:intergenic 50.0%
! CGACGTTGGAAAGAGTTGGT+CGG + chr3_1:83846246-83846265 None:intergenic 50.0%
ACGACGACGTTGGAAAGAGT+TGG + chr3_1:83846250-83846269 None:intergenic 50.0%
!! AGGGATTGAGGGTATCGGTT+GGG + chr3_1:83846323-83846342 None:intergenic 50.0%
!! AAGGGATTGAGGGTATCGGT+TGG + chr3_1:83846324-83846343 None:intergenic 50.0%
CGAGCCAGGACACAAAAACA+AGG + chr3_1:83846715-83846734 None:intergenic 50.0%
TTATCTTGGGCAGCGTGAGT+AGG + chr3_1:83846831-83846850 None:intergenic 50.0%
CACGCTGCCCAAGATAAAGT+TGG - chr3_1:83846834-83846853 Msa0381630:CDS 50.0%
!! GGTGTGTTGCTTCTCAACCT+AGG - chr3_1:83846855-83846874 Msa0381630:intron 50.0%
!! GTGTTGCTTCTCAACCTAGG+TGG - chr3_1:83846858-83846877 Msa0381630:intron 50.0%
!! AGTTTTGGTAGGTCGTGGCA+AGG - chr3_1:83847296-83847315 Msa0381630:intron 50.0%
TAACAGTAGAACCTGGGGGT+TGG - chr3_1:83847778-83847797 Msa0381630:intron 50.0%
AACAGTAGAACCTGGGGGTT+GGG - chr3_1:83847779-83847798 Msa0381630:intron 50.0%
CTTCCTTGGATTTAGGAGCC+CGG + chr3_1:83848094-83848113 None:intergenic 50.0%
TGCAGGCACTTGCACTTAAG+AGG - chr3_1:83848523-83848542 Msa0381630:CDS 50.0%
GCAGGCACTTGCACTTAAGA+GGG - chr3_1:83848524-83848543 Msa0381630:CDS 50.0%
TCTATGTTGGGATGCGGTAC+TGG - chr3_1:83848577-83848596 Msa0381630:intron 50.0%
GGATGGAATAACAAGGCTCG+TGG - chr3_1:83848817-83848836 Msa0381630:intron 50.0%
ACTGATGCTTGACCCAGTAG+TGG + chr3_1:83848873-83848892 None:intergenic 50.0%
TGGGTCAAGCATCAGTGTTC+TGG - chr3_1:83848877-83848896 Msa0381630:intron 50.0%
!! GTGTTCTGGAGCAAACGTTC+AGG - chr3_1:83848891-83848910 Msa0381630:intron 50.0%
! GAGTTTTTCTGAGCCAAGGG+AGG - chr3_1:83849131-83849150 Msa0381630:intron 50.0%
! GGAATAATCGGTTCTTGGGC+CGG + chr3_1:83849203-83849222 None:intergenic 50.0%
CCCAAGAACCGATTATTCCG+AGG - chr3_1:83849204-83849223 Msa0381630:intron 50.0%
! CCCTCGGAATAATCGGTTCT+TGG + chr3_1:83849208-83849227 None:intergenic 50.0%
TGGTATGCCACGGTTCAGAT+TGG + chr3_1:83849352-83849371 None:intergenic 50.0%
TGAGCACGCTCTTGCTTATC+AGG - chr3_1:83849526-83849545 Msa0381630:intron 50.0%
GATTTGAGCTTGAGCAGAGC+TGG - chr3_1:83849590-83849609 Msa0381630:intron 50.0%
! ATGGATTGCCAGAGTCGAGT+GGG - chr3_1:83849695-83849714 Msa0381630:CDS 50.0%
! CTTTCTGGCCAAGCTCAACT+AGG + chr3_1:83849757-83849776 None:intergenic 50.0%
CTAGTTGAGCTTGGCCAGAA+AGG - chr3_1:83849755-83849774 Msa0381630:CDS 50.0%
TCTCACCCCTTCCTTCATCA+TGG - chr3_1:83850003-83850022 Msa0381630:intron 50.0%
!! ATCTTCAGAGGTGCTGGTAG+GGG + chr3_1:83850080-83850099 None:intergenic 50.0%
! TGGAAAGAGTTGGTCGGCGT+GGG + chr3_1:83846240-83846259 None:intergenic 55.0%
! TTGGAAAGAGTTGGTCGGCG+TGG + chr3_1:83846241-83846260 None:intergenic 55.0%
TGCGGCGATGAAGGGATTGA+GGG + chr3_1:83846334-83846353 None:intergenic 55.0%
TGAACATCGTCCAGCGTCTC+TGG + chr3_1:83846885-83846904 None:intergenic 55.0%
CTGGGTACATCTTGTGCCAG+TGG - chr3_1:83847912-83847931 Msa0381630:intron 55.0%
! GGGCCGGATACCGAGTTTTA+AGG + chr3_1:83849187-83849206 None:intergenic 55.0%
!! GATGGATTGCCAGAGTCGAG+TGG - chr3_1:83849694-83849713 Msa0381630:CDS 55.0%
CAAGAATTGGGCACGTGTCC+CGG - chr3_1:83849973-83849992 Msa0381630:intron 55.0%
CTGCGGCGATGAAGGGATTG+AGG + chr3_1:83846335-83846354 None:intergenic 60.0%
TTGGTAGGTCGTGGCAAGGC+TGG - chr3_1:83847300-83847319 Msa0381630:intron 60.0%
CACAAACATGCCCAACCCCC+AGG + chr3_1:83847792-83847811 None:intergenic 60.0%
GCTCCGGGCTCCTAAATCCA+AGG - chr3_1:83848088-83848107 Msa0381630:intron 60.0%
!! GATGGTGGGATTGGACCCCT+CGG + chr3_1:83849224-83849243 None:intergenic 60.0%
AAGGGGTGAGACCAAGAGCC+GGG + chr3_1:83849994-83850013 None:intergenic 60.0%
GAAGGGGTGAGACCAAGAGC+CGG + chr3_1:83849995-83850014 None:intergenic 60.0%
TCGGCGTGGGTGAGGAAGGA+AGG + chr3_1:83846227-83846246 None:intergenic 65.0%
TTGGTCGGCGTGGGTGAGGA+AGG + chr3_1:83846231-83846250 None:intergenic 65.0%
! AGAGTTGGTCGGCGTGGGTG+AGG + chr3_1:83846235-83846254 None:intergenic 65.0%
GACGACGACGACGACGACGT+TGG + chr3_1:83846260-83846279 None:intergenic 65.0%
CCAGCGTCTCTGGTCCACCT+AGG + chr3_1:83846875-83846894 None:intergenic 65.0%
CCTAGGTGGACCAGAGACGC+TGG - chr3_1:83846872-83846891 Msa0381630:intron 65.0%
CTACAGGGCCCACTCGACTC+TGG + chr3_1:83849706-83849725 None:intergenic 65.0%
GTCGAGTGGGCCCTGTAGAG+TGG - chr3_1:83849708-83849727 Msa0381630:CDS 65.0%
GGTCGTGGCAAGGCTGGAGC+AGG - chr3_1:83847306-83847325 Msa0381630:intron 70.0%
TGGGCACGTGTCCCGGCTCT+TGG - chr3_1:83849980-83849999 Msa0381630:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83846123 83850451 83846123 ID=Msa0381630;Name=Msa0381630
chr3_1 mRNA 83846123 83850451 83846123 ID=Msa0381630-mRNA-1;Parent=Msa0381630;Name=Msa0381630-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|0.88|0.9|1|0.88|0.8|10|238|497
chr3_1 exon 83846123 83846676 83846123 ID=Msa0381630-mRNA-1:exon:21704;Parent=Msa0381630-mRNA-1
chr3_1 exon 83846767 83846867 83846767 ID=Msa0381630-mRNA-1:exon:21703;Parent=Msa0381630-mRNA-1
chr3_1 exon 83846958 83847179 83846958 ID=Msa0381630-mRNA-1:exon:21702;Parent=Msa0381630-mRNA-1
chr3_1 exon 83847422 83847548 83847422 ID=Msa0381630-mRNA-1:exon:21701;Parent=Msa0381630-mRNA-1
chr3_1 exon 83847662 83847765 83847662 ID=Msa0381630-mRNA-1:exon:21700;Parent=Msa0381630-mRNA-1
chr3_1 exon 83847945 83848046 83847945 ID=Msa0381630-mRNA-1:exon:21699;Parent=Msa0381630-mRNA-1
chr3_1 exon 83848408 83848551 83848408 ID=Msa0381630-mRNA-1:exon:21698;Parent=Msa0381630-mRNA-1
chr3_1 exon 83849639 83849942 83849639 ID=Msa0381630-mRNA-1:exon:21697;Parent=Msa0381630-mRNA-1
chr3_1 exon 83850211 83850342 83850211 ID=Msa0381630-mRNA-1:exon:21696;Parent=Msa0381630-mRNA-1
chr3_1 exon 83850364 83850451 83850364 ID=Msa0381630-mRNA-1:exon:21695;Parent=Msa0381630-mRNA-1
chr3_1 five_prime_UTR 83850364 83850451 83850364 ID=Msa0381630-mRNA-1:five_prime_utr;Parent=Msa0381630-mRNA-1
chr3_1 five_prime_UTR 83850285 83850342 83850285 ID=Msa0381630-mRNA-1:five_prime_utr;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83850211 83850284 83850211 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83849639 83849942 83849639 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83848408 83848551 83848408 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83847945 83848046 83847945 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83847662 83847765 83847662 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83847422 83847548 83847422 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83846958 83847179 83846958 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83846767 83846867 83846767 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 CDS 83846361 83846676 83846361 ID=Msa0381630-mRNA-1:cds;Parent=Msa0381630-mRNA-1
chr3_1 three_prime_UTR 83846123 83846360 83846123 ID=Msa0381630-mRNA-1:three_prime_utr;Parent=Msa0381630-mRNA-1
Gene Sequence

>Msa0381630

ATGAACGCACTCTCACATTCTTCTCTTCTTCCCAACCGATACCCTCAATCCCTTCATCGCCGCAGATTTTCAATGTCATGTTCTGATTCTGATATTCAAAATCTTACCCGTGTTACTTGCTACTCGGATTGTAACAAGTCTACATCTCAGGCATCCTTGTTTTTGTGTCCTGGCTCGACCAATACAAGAATTGGCACCAGAAACTTAGTTTCTCGCTCATTTTATTCTGCAGATGCAACCACTTATAATGAGCAGCTTACTGTACAATCTCCTACTCACGCTGCCCAAGATAAAGTTGGTGTGTTGCTTCTCAACCTAGGTGGACCAGAGACGCTGGACGATGTTCAACCTTTCCTCTTTAATCTTTTCGCAGATCCTGATATCATTCGGCTCCCAAGATTGTTTCGGTTTCTCCAGCAACCATTAGCAAAACTGATATCTACGCTCCGGGCTCCTAAATCCAAGGAAGCATATGCTTCTATTGGAGGTGGCTCTCCTTTACGCAAAATTACAGATGACCAGGCACTTGCACTTAAGAGGGCTTTGGAAGCAAAGGGCCTCTCTTCAAATATCTATGTTGGGATGCGGTACTGGTACCCATTCACTGAAGAAGCAATTCAACAAATTAAGAAGGATGGAATAACAAGGCTCGTGGTGTTACCTCTTTATCCCCAGTTTTCTATATCCACTACTGGGTCAAGCATCAGTGTTCTGGAGCAAACGTTCAGGGAAGATGCTTATTTGTCTAGGCTTCCTGTTTCCATTATAAACTCTTGGTATCAAAGAGAAGGTTATATTAGGTCAATGGCTGACTTAATTGAGAAAGAACTCGAGAGTTTTTCTGAGCCAAGGGAGGCAATGATATTTTTTAGTGCCCATGGTGTTCCTGTCAGTTATGTTGAGAATGCTGGGGATCCATACCGAGATCAAATGGAGGAGTGCATCTTCTTGATCATGCAGGAATTGAAAGCTAGAGGAATTAGTAATGAGCACGCTCTTGCTTATCAGGTTTGTTTTGAACTCTTTCAACTTGCTTTTCTACCATCTTCTGATTTGAGCTTGAGCAGAGCTGGAGATAGTCGAGTGGGCCCTGTAGAGTGGTTGAAACCATATACAGATGAAGTCCTAGTTGAGCTTGGCCAGAAAGGTGTGAAGAGTCTTTTAGCTGTTCCAGTGAGCTTTGTGAGTGAGCACATAGAGACTCTTGAAGAAATTGACATGGAGTACAGGGAATTGGCTCTTGAATCTGGCATCAAGAATTGGGCACGTGTCCCGGCTCTTGGTCTCACCCCTTCCTTCATCATGGATCTTGCAGATGCGGTGATAGAAGCTCTACCATCAGCAGCAGCAATAAATGCCCCTACCAGCACCTCTGAAGATATGGATAAAGACCCAGTTAAATACTTCGCCAAGATGTTTTTTGGTTCAATTTTGGCTTTCATCTTGTTTTTGTCGCCCAAAATGATAACTGCGTTCAGGAATCATGTCGTTTAA

Protein sequence

>Msa0381630

MNALSHSSLLPNRYPQSLHRRRFSMSCSDSDIQNLTRVTCYSDCNKSTSQASLFLCPGSTNTRIGTRNLVSRSFYSADATTYNEQLTVQSPTHAAQDKVGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQQPLAKLISTLRAPKSKEAYASIGGGSPLRKITDDQALALKRALEAKGLSSNIYVGMRYWYPFTEEAIQQIKKDGITRLVVLPLYPQFSISTTGSSISVLEQTFREDAYLSRLPVSIINSWYQREGYIRSMADLIEKELESFSEPREAMIFFSAHGVPVSYVENAGDPYRDQMEECIFLIMQELKARGISNEHALAYQVCFELFQLAFLPSSDLSLSRAGDSRVGPVEWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEIDMEYRELALESGIKNWARVPALGLTPSFIMDLADAVIEALPSAAAINAPTSTSEDMDKDPVKYFAKMFFGSILAFILFLSPKMITAFRNHVV*