Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422980 | G4XDS1 | 81.159 | 69 | 6 | 3 | 1 | 66 | 1 | 65 | 1.88e-23 | 102 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
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Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0615030 | Msa1422980 | 0.846589 | 1.974885e-59 | -8.615850e-47 |
Msa0758250 | Msa1422980 | 0.800034 | 1.741728e-48 | -8.615850e-47 |
Msa0836650 | Msa1422980 | 0.803607 | 3.215518e-49 | -8.615850e-47 |
Msa0464440 | Msa1422980 | 0.801699 | 7.960468e-49 | -8.615850e-47 |
Msa1095790 | Msa1422980 | 0.805199 | 1.497821e-49 | -8.615850e-47 |
Msa1215070 | Msa1422980 | 0.809716 | 1.648841e-50 | -8.615850e-47 |
Msa0559510 | Msa1422980 | 0.815117 | 1.089451e-51 | -8.615850e-47 |
Msa0973280 | Msa1422980 | 0.807553 | 4.779552e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1422980 | MtrunA17_Chr7g0272591 | 94.030 | 67 | 2 | 2 | 1 | 66 | 1 | 66 | 6.50e-27 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 17 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCAAATTTATCTTCTTTCA+TGG | 0.231855 | tig0025496:+62268 | None:intergenic |
ATTAGGTGATGAATAAATTA+CGG | 0.358514 | tig0025496:-62305 | Msa1422980:intron |
GAAACTAACGGACCGCTTAA+AGG | 0.384520 | tig0025496:+63248 | None:intergenic |
ATCATCATCATCAAGAAATA+TGG | 0.391274 | tig0025496:-63334 | Msa1422980:CDS |
CTCCACCTCATCGCTGAACC+TGG | 0.430406 | tig0025496:+63193 | None:intergenic |
CAGGTTCAGCGATGAGGTGG+AGG | 0.523948 | tig0025496:-63192 | Msa1422980:CDS |
CGCCAGGTTCAGCGATGAGG+TGG | 0.525195 | tig0025496:-63195 | Msa1422980:CDS |
AGCACGAGAGTAGGCTTCAG+TGG | 0.544891 | tig0025496:-63284 | Msa1422980:CDS |
GGAAGCAGAAGCACGAGAGT+AGG | 0.557076 | tig0025496:-63293 | Msa1422980:CDS |
AAAGCAGCAAGAAAAGCGCC+AGG | 0.558816 | tig0025496:-63211 | Msa1422980:CDS |
TCAAGAAATATGGTCGGAGA+CGG | 0.582861 | tig0025496:-63324 | Msa1422980:CDS |
TGGTCGGAGACGGAGAGTAA+CGG | 0.584768 | tig0025496:-63314 | Msa1422980:CDS |
TTCTTGTTGTTGGAAACTAA+CGG | 0.585089 | tig0025496:+63236 | None:intergenic |
AAGCGCCAGGTTCAGCGATG+AGG | 0.642839 | tig0025496:-63198 | Msa1422980:CDS |
TCATCATCAAGAAATATGGT+CGG | 0.656566 | tig0025496:-63330 | Msa1422980:CDS |
GGCTTCAGTGGATCACTAAG+CGG | 0.669801 | tig0025496:-63272 | Msa1422980:CDS |
TCACTAAGCGGACCTTTAAG+CGG | 0.676159 | tig0025496:-63260 | Msa1422980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTATTTTAATGAATTGTAA+AGG | + | tig0025496:62762-62781 | None:intergenic | 15.0% |
!!! | TTATCGTAAAAATCATTTTA+TGG | + | tig0025496:62961-62980 | None:intergenic | 15.0% |
!! | TGTGAATAATTTACTTAATA+CGG | - | tig0025496:63027-63046 | Msa1422980:intron | 15.0% |
!! | GGTTAAACATATAAAAAAAA+AGG | - | tig0025496:63094-63113 | Msa1422980:intron | 15.0% |
!! | AAGGAAATTATTAACATAAA+AGG | - | tig0025496:63113-63132 | Msa1422980:intron | 15.0% |
!!! | GTTATTTTAATGAATTGTAA+AGG | + | tig0025496:62762-62781 | None:intergenic | 15.0% |
!!! | TTATCGTAAAAATCATTTTA+TGG | + | tig0025496:62961-62980 | None:intergenic | 15.0% |
!! | TGTGAATAATTTACTTAATA+CGG | - | tig0025496:63027-63046 | Msa1422980:intron | 15.0% |
!! | GGTTAAACATATAAAAAAAA+AGG | - | tig0025496:63094-63113 | Msa1422980:intron | 15.0% |
!! | AAGGAAATTATTAACATAAA+AGG | - | tig0025496:63113-63132 | Msa1422980:intron | 15.0% |
!! | CACAAAAATAGTCATATTTA+TGG | - | tig0025496:62908-62927 | Msa1422980:intron | 20.0% |
!! | TAATACGGTCAATAAAAATT+AGG | - | tig0025496:63042-63061 | Msa1422980:intron | 20.0% |
!! | AATACGGTCAATAAAAATTA+GGG | - | tig0025496:63043-63062 | Msa1422980:intron | 20.0% |
!! | TTACATTATATGATTGTGAT+CGG | + | tig0025496:63250-63269 | None:intergenic | 20.0% |
!!! | TGACCTTGTTAATTTTTATT+AGG | - | tig0025496:63312-63331 | Msa1422980:CDS | 20.0% |
!! | TCACCTAATAAAAATTAACA+AGG | + | tig0025496:63318-63337 | None:intergenic | 20.0% |
!! | ATTAGGTGATGAATAAATTA+CGG | - | tig0025496:63329-63348 | Msa1422980:CDS | 20.0% |
!! | CACAAAAATAGTCATATTTA+TGG | - | tig0025496:62908-62927 | Msa1422980:intron | 20.0% |
!! | TAATACGGTCAATAAAAATT+AGG | - | tig0025496:63042-63061 | Msa1422980:intron | 20.0% |
!! | AATACGGTCAATAAAAATTA+GGG | - | tig0025496:63043-63062 | Msa1422980:intron | 20.0% |
!! | TTACATTATATGATTGTGAT+CGG | + | tig0025496:63250-63269 | None:intergenic | 20.0% |
!!! | TGACCTTGTTAATTTTTATT+AGG | - | tig0025496:63312-63331 | Msa1422980:CDS | 20.0% |
!! | TCACCTAATAAAAATTAACA+AGG | + | tig0025496:63318-63337 | None:intergenic | 20.0% |
!! | ATTAGGTGATGAATAAATTA+CGG | - | tig0025496:63329-63348 | Msa1422980:CDS | 20.0% |
! | ATCATCATCATCAAGAAATA+TGG | - | tig0025496:62300-62319 | Msa1422980:CDS | 25.0% |
!! | ATTTTACTCGTTTCCTAATA+TGG | + | tig0025496:62537-62556 | None:intergenic | 25.0% |
! | TATACAAGAAACTAATGCTA+TGG | - | tig0025496:62607-62626 | Msa1422980:intron | 25.0% |
!!! | TATCATTTGACTTTTGTTTG+CGG | + | tig0025496:62854-62873 | None:intergenic | 25.0% |
!! | TCGGCATGTAATTAATTTTT+AGG | + | tig0025496:63231-63250 | None:intergenic | 25.0% |
! | GTGGAATAAAAATTAACATG+TGG | + | tig0025496:63280-63299 | None:intergenic | 25.0% |
! | ATCATCATCATCAAGAAATA+TGG | - | tig0025496:62300-62319 | Msa1422980:CDS | 25.0% |
!! | ATTTTACTCGTTTCCTAATA+TGG | + | tig0025496:62537-62556 | None:intergenic | 25.0% |
! | TATACAAGAAACTAATGCTA+TGG | - | tig0025496:62607-62626 | Msa1422980:intron | 25.0% |
!!! | TATCATTTGACTTTTGTTTG+CGG | + | tig0025496:62854-62873 | None:intergenic | 25.0% |
!! | TCGGCATGTAATTAATTTTT+AGG | + | tig0025496:63231-63250 | None:intergenic | 25.0% |
! | GTGGAATAAAAATTAACATG+TGG | + | tig0025496:63280-63299 | None:intergenic | 25.0% |
TCATCATCAAGAAATATGGT+CGG | - | tig0025496:62304-62323 | Msa1422980:intron | 30.0% | |
!! | TTCTTGTTGTTGGAAACTAA+CGG | + | tig0025496:62401-62420 | None:intergenic | 30.0% |
AATGCTATGGTAAGCTATTA+TGG | - | tig0025496:62620-62639 | Msa1422980:intron | 30.0% | |
! | TCGCTGTGTAATAACTTTTA+CGG | - | tig0025496:62714-62733 | Msa1422980:intron | 30.0% |
! | TAAAGGTGTGTTAAAATGCA+TGG | + | tig0025496:62745-62764 | None:intergenic | 30.0% |
!! | AAGAGAGAAGTATTACACAA+TGG | - | tig0025496:62808-62827 | Msa1422980:intron | 30.0% |
AAATACTAACTGATGTCTCT+GGG | + | tig0025496:63207-63226 | None:intergenic | 30.0% | |
AAAATACTAACTGATGTCTC+TGG | + | tig0025496:63208-63227 | None:intergenic | 30.0% | |
AAGGTCAGTATATTTGAAAG+TGG | + | tig0025496:63299-63318 | None:intergenic | 30.0% | |
TCATCATCAAGAAATATGGT+CGG | - | tig0025496:62304-62323 | Msa1422980:intron | 30.0% | |
!! | TTCTTGTTGTTGGAAACTAA+CGG | + | tig0025496:62401-62420 | None:intergenic | 30.0% |
AATGCTATGGTAAGCTATTA+TGG | - | tig0025496:62620-62639 | Msa1422980:intron | 30.0% | |
! | TCGCTGTGTAATAACTTTTA+CGG | - | tig0025496:62714-62733 | Msa1422980:intron | 30.0% |
! | TAAAGGTGTGTTAAAATGCA+TGG | + | tig0025496:62745-62764 | None:intergenic | 30.0% |
!! | AAGAGAGAAGTATTACACAA+TGG | - | tig0025496:62808-62827 | Msa1422980:intron | 30.0% |
AAATACTAACTGATGTCTCT+GGG | + | tig0025496:63207-63226 | None:intergenic | 30.0% | |
AAAATACTAACTGATGTCTC+TGG | + | tig0025496:63208-63227 | None:intergenic | 30.0% | |
AAGGTCAGTATATTTGAAAG+TGG | + | tig0025496:63299-63318 | None:intergenic | 30.0% | |
! | GAAGTATTACACAATGGTAG+AGG | - | tig0025496:62814-62833 | Msa1422980:intron | 35.0% |
AAAATTAGGGTCATGCTAAC+CGG | - | tig0025496:63056-63075 | Msa1422980:intron | 35.0% | |
! | GAAGTATTACACAATGGTAG+AGG | - | tig0025496:62814-62833 | Msa1422980:intron | 35.0% |
AAAATTAGGGTCATGCTAAC+CGG | - | tig0025496:63056-63075 | Msa1422980:intron | 35.0% | |
TCAAGAAATATGGTCGGAGA+CGG | - | tig0025496:62310-62329 | Msa1422980:intron | 40.0% | |
!!! | GCTGCTTTTCTTCTTGTTGT+TGG | + | tig0025496:62411-62430 | None:intergenic | 40.0% |
TGCGCAAGTTATTGTAGCTA+GGG | + | tig0025496:62665-62684 | None:intergenic | 40.0% | |
TCAAGAAATATGGTCGGAGA+CGG | - | tig0025496:62310-62329 | Msa1422980:intron | 40.0% | |
!!! | GCTGCTTTTCTTCTTGTTGT+TGG | + | tig0025496:62411-62430 | None:intergenic | 40.0% |
TGCGCAAGTTATTGTAGCTA+GGG | + | tig0025496:62665-62684 | None:intergenic | 40.0% | |
TCACTAAGCGGACCTTTAAG+CGG | - | tig0025496:62374-62393 | Msa1422980:intron | 45.0% | |
! | GAAACTAACGGACCGCTTAA+AGG | + | tig0025496:62389-62408 | None:intergenic | 45.0% |
! | TCGAATGTTCTGGACCGAAA+CGG | + | tig0025496:62504-62523 | None:intergenic | 45.0% |
CTGCGCAAGTTATTGTAGCT+AGG | + | tig0025496:62666-62685 | None:intergenic | 45.0% | |
TACACAATGGTAGAGGCAAG+TGG | - | tig0025496:62821-62840 | Msa1422980:intron | 45.0% | |
ACACAATGGTAGAGGCAAGT+GGG | - | tig0025496:62822-62841 | Msa1422980:intron | 45.0% | |
ATATGTTTAACCAGTGCCGC+AGG | + | tig0025496:63086-63105 | None:intergenic | 45.0% | |
!! | GATGTCTCTGGGACACATAT+AGG | + | tig0025496:63196-63215 | None:intergenic | 45.0% |
TCACTAAGCGGACCTTTAAG+CGG | - | tig0025496:62374-62393 | Msa1422980:intron | 45.0% | |
! | GAAACTAACGGACCGCTTAA+AGG | + | tig0025496:62389-62408 | None:intergenic | 45.0% |
! | TCGAATGTTCTGGACCGAAA+CGG | + | tig0025496:62504-62523 | None:intergenic | 45.0% |
CTGCGCAAGTTATTGTAGCT+AGG | + | tig0025496:62666-62685 | None:intergenic | 45.0% | |
TACACAATGGTAGAGGCAAG+TGG | - | tig0025496:62821-62840 | Msa1422980:intron | 45.0% | |
ACACAATGGTAGAGGCAAGT+GGG | - | tig0025496:62822-62841 | Msa1422980:intron | 45.0% | |
ATATGTTTAACCAGTGCCGC+AGG | + | tig0025496:63086-63105 | None:intergenic | 45.0% | |
!! | GATGTCTCTGGGACACATAT+AGG | + | tig0025496:63196-63215 | None:intergenic | 45.0% |
GGCTTCAGTGGATCACTAAG+CGG | - | tig0025496:62362-62381 | Msa1422980:intron | 50.0% | |
!! | AAAGCAGCAAGAAAAGCGCC+AGG | - | tig0025496:62423-62442 | Msa1422980:intron | 50.0% |
GTTTCGGTCCAGAACATTCG+AGG | - | tig0025496:62503-62522 | Msa1422980:intron | 50.0% | |
TATCACCGCCTCGAATGTTC+TGG | + | tig0025496:62514-62533 | None:intergenic | 50.0% | |
CGAGGCGGTGATACCATATT+AGG | - | tig0025496:62521-62540 | Msa1422980:intron | 50.0% | |
GGCTTCAGTGGATCACTAAG+CGG | - | tig0025496:62362-62381 | Msa1422980:intron | 50.0% | |
!! | AAAGCAGCAAGAAAAGCGCC+AGG | - | tig0025496:62423-62442 | Msa1422980:intron | 50.0% |
GTTTCGGTCCAGAACATTCG+AGG | - | tig0025496:62503-62522 | Msa1422980:intron | 50.0% | |
TATCACCGCCTCGAATGTTC+TGG | + | tig0025496:62514-62533 | None:intergenic | 50.0% | |
CGAGGCGGTGATACCATATT+AGG | - | tig0025496:62521-62540 | Msa1422980:intron | 50.0% | |
TGGTCGGAGACGGAGAGTAA+CGG | - | tig0025496:62320-62339 | Msa1422980:intron | 55.0% | |
! | GGAAGCAGAAGCACGAGAGT+AGG | - | tig0025496:62341-62360 | Msa1422980:intron | 55.0% |
AGCACGAGAGTAGGCTTCAG+TGG | - | tig0025496:62350-62369 | Msa1422980:intron | 55.0% | |
CGATGAGGTGGAGGATTACG+TGG | - | tig0025496:62451-62470 | Msa1422980:intron | 55.0% | |
CGTTCGCGATGACACCGTTT+CGG | - | tig0025496:62487-62506 | Msa1422980:intron | 55.0% | |
TCGGTCCAGAACATTCGAGG+CGG | - | tig0025496:62506-62525 | Msa1422980:intron | 55.0% | |
TGGTCGGAGACGGAGAGTAA+CGG | - | tig0025496:62320-62339 | Msa1422980:intron | 55.0% | |
! | GGAAGCAGAAGCACGAGAGT+AGG | - | tig0025496:62341-62360 | Msa1422980:intron | 55.0% |
AGCACGAGAGTAGGCTTCAG+TGG | - | tig0025496:62350-62369 | Msa1422980:intron | 55.0% | |
CGATGAGGTGGAGGATTACG+TGG | - | tig0025496:62451-62470 | Msa1422980:intron | 55.0% | |
CGTTCGCGATGACACCGTTT+CGG | - | tig0025496:62487-62506 | Msa1422980:intron | 55.0% | |
TCGGTCCAGAACATTCGAGG+CGG | - | tig0025496:62506-62525 | Msa1422980:intron | 55.0% | |
AAGCGCCAGGTTCAGCGATG+AGG | - | tig0025496:62436-62455 | Msa1422980:intron | 60.0% | |
CTCCACCTCATCGCTGAACC+TGG | + | tig0025496:62444-62463 | None:intergenic | 60.0% | |
CAGGTTCAGCGATGAGGTGG+AGG | - | tig0025496:62442-62461 | Msa1422980:intron | 60.0% | |
CATGCTAACCGGTGCTCCTG+CGG | - | tig0025496:63067-63086 | Msa1422980:intron | 60.0% | |
AAGCGCCAGGTTCAGCGATG+AGG | - | tig0025496:62436-62455 | Msa1422980:intron | 60.0% | |
CTCCACCTCATCGCTGAACC+TGG | + | tig0025496:62444-62463 | None:intergenic | 60.0% | |
CAGGTTCAGCGATGAGGTGG+AGG | - | tig0025496:62442-62461 | Msa1422980:intron | 60.0% | |
CATGCTAACCGGTGCTCCTG+CGG | - | tig0025496:63067-63086 | Msa1422980:intron | 60.0% | |
CGCCAGGTTCAGCGATGAGG+TGG | - | tig0025496:62439-62458 | Msa1422980:intron | 65.0% | |
! | AACCAGTGCCGCAGGAGCAC+CGG | + | tig0025496:63078-63097 | None:intergenic | 65.0% |
CGCCAGGTTCAGCGATGAGG+TGG | - | tig0025496:62439-62458 | Msa1422980:intron | 65.0% | |
! | AACCAGTGCCGCAGGAGCAC+CGG | + | tig0025496:63078-63097 | None:intergenic | 65.0% |
AACCGGTGCTCCTGCGGCAC+TGG | - | tig0025496:63073-63092 | Msa1422980:intron | 70.0% | |
AACCGGTGCTCCTGCGGCAC+TGG | - | tig0025496:63073-63092 | Msa1422980:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0025496 | gene | 62275 | 63381 | 62275 | ID=Msa1422980;Name=Msa1422980 |
tig0025496 | mRNA | 62275 | 63381 | 62275 | ID=Msa1422980-mRNA-1;Parent=Msa1422980;Name=Msa1422980-mRNA-1;_AED=0.57;_eAED=0.58;_QI=0|0|0|0.5|0|0|2|0|80 |
tig0025496 | exon | 63187 | 63381 | 63187 | ID=Msa1422980-mRNA-1:exon:2986;Parent=Msa1422980-mRNA-1 |
tig0025496 | exon | 62275 | 62322 | 62275 | ID=Msa1422980-mRNA-1:exon:2985;Parent=Msa1422980-mRNA-1 |
tig0025496 | CDS | 63187 | 63381 | 63187 | ID=Msa1422980-mRNA-1:cds;Parent=Msa1422980-mRNA-1 |
tig0025496 | CDS | 62275 | 62322 | 62275 | ID=Msa1422980-mRNA-1:cds;Parent=Msa1422980-mRNA-1 |
Gene Sequence |
Protein sequence |