AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973280 MtrunA17_Chr6g0452221 76.522 115 16 2 1 104 1 115 3.08e-50 168
Msa0973280 MtrunA17_Chr8g0384051 88.889 36 4 0 92 127 1 36 2.04e-16 67.8
Msa0973280 MtrunA17_Chr4g0049181 40.244 82 49 0 8 89 31 112 1.79e-15 71.6
Msa0973280 MtrunA17_Chr8g0337671 34.146 123 66 3 1 112 10 128 1.41e-14 68.9
Msa0973280 MtrunA17_Chr7g0249841 36.667 90 47 1 26 105 30 119 1.08e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973280 AT3G28450.1 43.820 89 47 2 5 91 11 98 4.33e-19 82.4
Msa0973280 AT1G69990.1 37.255 102 53 3 15 106 8 108 5.33e-15 70.5
Msa0973280 AT1G27190.1 45.588 68 35 1 26 91 25 92 7.28e-15 70.1
Msa0973280 AT5G48380.1 38.095 63 39 0 23 85 26 88 6.07e-11 58.9

Find 42 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAAAACTTGAACAGATTT+TGG 0.146646 6_4:-5754927 None:intergenic
GTACCCTCTGTTATTGTTAT+AGG 0.156374 6_4:+5755042 Msa0973280:three_prime_UTR
CTGAAAAGCATGAAGCTTTC+TGG 0.221436 6_4:+5748466 Msa0973280:CDS
CTCCTTTGATTCGTTGTCTA+AGG 0.241635 6_4:+5754608 Msa0973280:CDS
GAGTTCTCCATCACAGAAAA+TGG 0.284123 6_4:-5754588 None:intergenic
TGTTAGAGAGAATCGTGTTT+TGG 0.300147 6_4:+5748435 Msa0973280:CDS
AAACGCCAACTTTCCCTTCC+GGG 0.318313 6_4:-5754636 None:intergenic
TACGTTGTCTTCTTCAACTT+GGG 0.327792 6_4:-5748293 None:intergenic
CCGATAGTCAAATCTCTTCA+TGG 0.344654 6_4:+5748353 Msa0973280:CDS
AAAACGCCAACTTTCCCTTC+CGG 0.401510 6_4:-5754637 None:intergenic
TGGTTGTTGTGTTCGTTGTT+TGG 0.413345 6_4:+5754682 Msa0973280:CDS
TGGTTGATCAGGATTCAAAA+AGG 0.418460 6_4:-5754907 None:intergenic
GAGTTTCGACAAACAATCAA+TGG 0.446006 6_4:-5754841 None:intergenic
CGAAACTCTGATGTGGTTCA+TGG 0.449538 6_4:+5754856 Msa0973280:three_prime_UTR
CCATGAAGAGATTTGACTAT+CGG 0.456968 6_4:-5748353 None:intergenic
TTTGACTATCGGAGTTTCCT+AGG 0.457159 6_4:-5748342 None:intergenic
GACAACGTAAGATGTCTTCA+AGG 0.494115 6_4:+5748307 Msa0973280:CDS
TTACGTTGTCTTCTTCAACT+TGG 0.503731 6_4:-5748294 None:intergenic
GGTTAGGTTTCATCGCGGAC+TGG 0.529583 6_4:+5754662 Msa0973280:CDS
AAACCTCACTGATATCACTT+TGG 0.529602 6_4:+5754789 Msa0973280:three_prime_UTR
CTCTGATGTGGTTCATGGTA+GGG 0.530007 6_4:+5754861 Msa0973280:three_prime_UTR
TGATGGAGAAATCAATTGAT+TGG 0.530694 6_4:+5754738 Msa0973280:three_prime_UTR
TGATGCCCGGAAGGGAAAGT+TGG 0.537679 6_4:+5754631 Msa0973280:CDS
TGGTTCATGGTAGGGAGACA+TGG 0.540022 6_4:+5754869 Msa0973280:three_prime_UTR
ATGAACCTAAAACTCAATCA+AGG 0.542470 6_4:-5754711 None:intergenic
CACCTTAGACAACGAATCAA+AGG 0.552102 6_4:-5754610 None:intergenic
TGAAAACTGTGAAGAAGAGA+AGG 0.555853 6_4:-5748246 None:intergenic
ACTCTGATGTGGTTCATGGT+AGG 0.558226 6_4:+5754860 Msa0973280:three_prime_UTR
TCGTTGTCTAAGGTGATGCC+CGG 0.558407 6_4:+5754618 Msa0973280:CDS
AAATTCAACAACAGAACCGT+TGG 0.562583 6_4:+5748376 Msa0973280:CDS
TGTCTAAGGTGATGCCCGGA+AGG 0.576988 6_4:+5754622 Msa0973280:CDS
TGGAGAAATCAATTGATTGG+TGG 0.581051 6_4:+5754741 Msa0973280:three_prime_UTR
CAAGGTATTCAACAAAACCT+AGG 0.595872 6_4:+5748325 Msa0973280:CDS
GTCTAAGGTGATGCCCGGAA+GGG 0.614155 6_4:+5754623 Msa0973280:CDS
TGTTTGTCGAAACTCTGATG+TGG 0.625592 6_4:+5754849 Msa0973280:three_prime_UTR
AAGGAACAGTGATGAAGACA+TGG 0.639152 6_4:-5748227 None:intergenic
TAATTCAACATAATTCAAAG+AGG 0.645134 6_4:-5755005 None:intergenic
AAAATCACAGATGAAACCAA+CGG 0.675193 6_4:-5748392 None:intergenic
CACCCTATAACAATAACAGA+GGG 0.680813 6_4:-5755045 None:intergenic
GCACCCTATAACAATAACAG+AGG 0.713207 6_4:-5755046 None:intergenic
GAACCAAAGTGATATCAGTG+AGG 0.756691 6_4:-5754792 None:intergenic
TTTAAGGTTAGGTTTCATCG+CGG 0.766399 6_4:+5754657 Msa0973280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTATTTGAATTGA+AGG - chr6_4:5749137-5749156 None:intergenic 10.0%
!!! GAATTTATAAATTTTCTAAT+TGG + chr6_4:5750285-5750304 Msa0973280:intron 10.0%
!!! TTATTTATTTTGAAAATTGA+GGG + chr6_4:5750783-5750802 Msa0973280:intron 10.0%
!!! TTTTTGAGAATTTTTAATTT+AGG + chr6_4:5751078-5751097 Msa0973280:intron 10.0%
!! AAAAATAAAGAAATTGTTTA+TGG + chr6_4:5751277-5751296 Msa0973280:intron 10.0%
!! TCAATTATTTCATATAAATT+AGG + chr6_4:5751676-5751695 Msa0973280:intron 10.0%
!!! TTTTACAAATAGAAATAATT+TGG + chr6_4:5753492-5753511 Msa0973280:intron 10.0%
!!! TTTTTTAAATCTGAAATAAA+TGG + chr6_4:5753821-5753840 Msa0973280:intron 10.0%
!!! AAAGTTTGATTATTTTTCAT+TGG - chr6_4:5748926-5748945 None:intergenic 15.0%
!!! TTGATTTTAAGTTTGAAAAT+GGG - chr6_4:5749032-5749051 None:intergenic 15.0%
!!! AAAAATGTTTTTGTTTTTGT+TGG - chr6_4:5749055-5749074 None:intergenic 15.0%
!!! AACAAAAACAAAAACATTTT+TGG + chr6_4:5749054-5749073 Msa0973280:intron 15.0%
!! AAGTATAGAACATAAAATAA+AGG + chr6_4:5749731-5749750 Msa0973280:intron 15.0%
!!! ATTTGATAACAAAGTTTATA+AGG - chr6_4:5749904-5749923 None:intergenic 15.0%
!!! GTTATTTATTTTGAAAATTG+AGG + chr6_4:5750782-5750801 Msa0973280:intron 15.0%
!! AAAAAATGTATAATTACTAG+AGG + chr6_4:5750926-5750945 Msa0973280:intron 15.0%
!!! TTACAAATTTTTTTTTGTAG+TGG - chr6_4:5751554-5751573 None:intergenic 15.0%
!!! TTATTATGGAATTTTTCATA+TGG + chr6_4:5751747-5751766 Msa0973280:intron 15.0%
!!! TTTTTTATTAGGTTTTGAAA+CGG + chr6_4:5752013-5752032 Msa0973280:intron 15.0%
!!! GTTTCATTTAGTTTTAAAAA+AGG - chr6_4:5752447-5752466 None:intergenic 15.0%
!! AAACAACAATAAACATATAT+AGG - chr6_4:5752728-5752747 None:intergenic 15.0%
!!! ATTTTGCACTTTTATATTTT+TGG + chr6_4:5752910-5752929 Msa0973280:intron 15.0%
!! AAATAGTAACAAAAGAAAAA+AGG - chr6_4:5753021-5753040 None:intergenic 15.0%
!!! AATTTTTAAAGTAAATAAGC+AGG + chr6_4:5753208-5753227 Msa0973280:intron 15.0%
!!! TCAACTTTTTTTTTTTTTGA+AGG - chr6_4:5753591-5753610 None:intergenic 15.0%
!!! TTTATCTTTTGTAAGATTTA+TGG - chr6_4:5754092-5754111 None:intergenic 15.0%
!!! ATCATTTTCATAATAAACCT+TGG + chr6_4:5748855-5748874 Msa0973280:intron 20.0%
!!! TCATTTTCATAATAAACCTT+GGG + chr6_4:5748856-5748875 Msa0973280:intron 20.0%
!! AAATAGAAGGAAAATTCAAT+GGG - chr6_4:5748890-5748909 None:intergenic 20.0%
!! AAAATAGAAGGAAAATTCAA+TGG - chr6_4:5748891-5748910 None:intergenic 20.0%
!! AGTTTGATTAAGAAAATAGA+AGG - chr6_4:5748903-5748922 None:intergenic 20.0%
!!! GTTGATTTTAAGTTTGAAAA+TGG - chr6_4:5749033-5749052 None:intergenic 20.0%
!!! TATGTTCTATACTTTTGTTT+TGG - chr6_4:5749725-5749744 None:intergenic 20.0%
!! TTCAACAACAATAATCTATA+AGG + chr6_4:5749871-5749890 Msa0973280:intron 20.0%
!!! TGATCTTATTTATATGCATT+CGG - chr6_4:5750218-5750237 None:intergenic 20.0%
!!! CTTTTGGGTATAATATAATA+TGG + chr6_4:5750667-5750686 Msa0973280:intron 20.0%
!!! TTCTTTTGAGTATTTTGTTA+GGG - chr6_4:5750908-5750927 None:intergenic 20.0%
!!! TTTCTTTTGAGTATTTTGTT+AGG - chr6_4:5750909-5750928 None:intergenic 20.0%
!! TGGGGATATATATATTTATT+TGG + chr6_4:5750962-5750981 Msa0973280:intron 20.0%
!! TAACCTCTAGTAATTATATT+GGG - chr6_4:5751009-5751028 None:intergenic 20.0%
!! TTAAGAGTAATTAGAAATGA+TGG + chr6_4:5751142-5751161 Msa0973280:intron 20.0%
!!! TTTTTTCCTTCATCATAATT+TGG + chr6_4:5751306-5751325 Msa0973280:intron 20.0%
!!! TTACTAATGTTTTTTGAACA+AGG - chr6_4:5751612-5751631 None:intergenic 20.0%
!! AATTCTTAAGAAAACTCAAA+TGG + chr6_4:5751711-5751730 Msa0973280:intron 20.0%
!!! TTTTTATTAGGTTTTGAAAC+GGG + chr6_4:5752014-5752033 Msa0973280:intron 20.0%
!!! TTTTTCCTTAAAAAAAAGAG+AGG + chr6_4:5752582-5752601 Msa0973280:intron 20.0%
!! AACAATAAACATATATAGGA+GGG - chr6_4:5752724-5752743 None:intergenic 20.0%
!! GTTCACTTTAAATAATATGT+AGG - chr6_4:5752761-5752780 None:intergenic 20.0%
!! TCTTATTGTTACATTTAACT+TGG + chr6_4:5752992-5753011 Msa0973280:intron 20.0%
!! TTTGTCAATAAAATAAGTGT+TGG - chr6_4:5753305-5753324 None:intergenic 20.0%
!! CAAGAAAAATCATGATTTAT+TGG - chr6_4:5753403-5753422 None:intergenic 20.0%
!!! TTAAATCTGAAATAAATGGA+AGG + chr6_4:5753825-5753844 Msa0973280:intron 20.0%
!! AACACGTATATATATTGAAA+GGG - chr6_4:5754477-5754496 None:intergenic 20.0%
!!! TTCATTTTGTTATTCATACT+TGG + chr6_4:5754972-5754991 Msa0973280:three_prime_UTR 20.0%
!! TAATTCAACATAATTCAAAG+AGG - chr6_4:5755008-5755027 None:intergenic 20.0%
!!! TTATGCCACTTTTAATTTCT+TGG + chr6_4:5748617-5748636 Msa0973280:intron 25.0%
!! CATTTTCATAATAAACCTTG+GGG + chr6_4:5748857-5748876 Msa0973280:intron 25.0%
! AATAGAAGGAAAATTCAATG+GGG - chr6_4:5748889-5748908 None:intergenic 25.0%
!!! TATCTTATTTTTCTTGGGAA+GGG - chr6_4:5749369-5749388 None:intergenic 25.0%
!!! ATATCTTATTTTTCTTGGGA+AGG - chr6_4:5749370-5749389 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTCTT+GGG - chr6_4:5749374-5749393 None:intergenic 25.0%
! CAAGAAAAATAAGATATCAC+CGG + chr6_4:5749373-5749392 Msa0973280:intron 25.0%
!!! AGTTGTTTTATCTTGGTTTT+CGG - chr6_4:5749433-5749452 None:intergenic 25.0%
!!! ATATGTCAGTTGTTTTATCT+TGG - chr6_4:5749440-5749459 None:intergenic 25.0%
! GTTCTCTTTAATAATCCTTA+AGG + chr6_4:5750123-5750142 Msa0973280:intron 25.0%
! ACTTTCATTAGAGATATTCT+TGG + chr6_4:5750485-5750504 Msa0973280:intron 25.0%
! ATCAGTCAAAAAATACTGAA+AGG + chr6_4:5750823-5750842 Msa0973280:intron 25.0%
! TCAGTCAAAAAATACTGAAA+GGG + chr6_4:5750824-5750843 Msa0973280:intron 25.0%
!!! TCTTTTGAGTATTTTGTTAG+GGG - chr6_4:5750907-5750926 None:intergenic 25.0%
! AATGTATAATTACTAGAGGA+TGG + chr6_4:5750930-5750949 Msa0973280:intron 25.0%
! ATGTATAATTACTAGAGGAT+GGG + chr6_4:5750931-5750950 Msa0973280:intron 25.0%
! AACCTCTAGTAATTATATTG+GGG - chr6_4:5751008-5751027 None:intergenic 25.0%
! GTAACCTCTAGTAATTATAT+TGG - chr6_4:5751010-5751029 None:intergenic 25.0%
! TATAATTACTAGAGGTTACT+TGG + chr6_4:5751011-5751030 Msa0973280:intron 25.0%
! ATAATTACTAGAGGTTACTT+GGG + chr6_4:5751012-5751031 Msa0973280:intron 25.0%
! ATGCACCAAAAAAAAAATGA+CGG + chr6_4:5751170-5751189 Msa0973280:intron 25.0%
!!! ATACTCCGTCATTTTTTTTT+TGG - chr6_4:5751178-5751197 None:intergenic 25.0%
! ATATCAGTATAAGTGCAAAA+AGG + chr6_4:5751243-5751262 Msa0973280:intron 25.0%
! TATCAGTATAAGTGCAAAAA+GGG + chr6_4:5751244-5751263 Msa0973280:intron 25.0%
!!! ATGGGAAAATAGTATTTTGA+AGG + chr6_4:5751375-5751394 Msa0973280:intron 25.0%
!!! TGGGAAAATAGTATTTTGAA+GGG + chr6_4:5751376-5751395 Msa0973280:intron 25.0%
! AATAATGCATAGAATATGCA+AGG + chr6_4:5751509-5751528 Msa0973280:intron 25.0%
!!! AAATTTTTTTTTGTAGTGGC+CGG - chr6_4:5751550-5751569 None:intergenic 25.0%
! AAATTCCATAATAACATAGC+TGG - chr6_4:5751741-5751760 None:intergenic 25.0%
! ATTAAGGCTATCATTGAAAA+TGG - chr6_4:5751828-5751847 None:intergenic 25.0%
! GTATTAAAGTCACAATAATG+TGG + chr6_4:5751927-5751946 Msa0973280:intron 25.0%
!!! TGGATTAGTGGTTTTTTATT+AGG + chr6_4:5752002-5752021 Msa0973280:intron 25.0%
! TAAACTAGAAAAATGGTGTA+GGG - chr6_4:5752086-5752105 None:intergenic 25.0%
! TGTATGGTAAACTAGAAAAA+TGG - chr6_4:5752093-5752112 None:intergenic 25.0%
!!! TGAAACTTTGTTTTCTTCTT+TGG + chr6_4:5752461-5752480 Msa0973280:intron 25.0%
! AGTTTGTGGTTGTATTTAAA+GGG + chr6_4:5752495-5752514 Msa0973280:intron 25.0%
! AAGAGATAAATGATGATAAG+AGG + chr6_4:5752551-5752570 Msa0973280:intron 25.0%
!!! AAGCTTAACATTGTTTTGAA+GGG + chr6_4:5752677-5752696 Msa0973280:intron 25.0%
! ACAATAAACATATATAGGAG+GGG - chr6_4:5752723-5752742 None:intergenic 25.0%
! CAACAATAAACATATATAGG+AGG - chr6_4:5752725-5752744 None:intergenic 25.0%
!!! ATGTTTATTGTTGTTTGCAT+CGG + chr6_4:5752732-5752751 Msa0973280:intron 25.0%
! TTCTTAATTGGTCCAAATTA+AGG - chr6_4:5752863-5752882 None:intergenic 25.0%
!! ATCTGTAATTTGTCATTACT+TGG - chr6_4:5753348-5753367 None:intergenic 25.0%
! GAAAAATCATGATTTATTGG+CGG - chr6_4:5753400-5753419 None:intergenic 25.0%
!! TCTTGATTGAATTGACTTAT+TGG + chr6_4:5753450-5753469 Msa0973280:intron 25.0%
! GACTTATTGGTATTTGAATT+TGG + chr6_4:5753463-5753482 Msa0973280:intron 25.0%
!!! TAGATATTCTGATTAGCTTT+TGG - chr6_4:5753711-5753730 None:intergenic 25.0%
! TAATGAACGTGAATGAAAAA+AGG - chr6_4:5754034-5754053 None:intergenic 25.0%
!! GATTTTCTTCTACAAACTAA+TGG + chr6_4:5754160-5754179 Msa0973280:intron 25.0%
! ACAAACAAATTCAATCACAT+GGG - chr6_4:5754223-5754242 None:intergenic 25.0%
! TACAAACAAATTCAATCACA+TGG - chr6_4:5754224-5754243 None:intergenic 25.0%
!! TGATTGAATTTGTTTGTATG+TGG + chr6_4:5754226-5754245 Msa0973280:intron 25.0%
!! TTTGTTTGTATGTGGATTTT+CGG + chr6_4:5754234-5754253 Msa0973280:intron 25.0%
! AACAAAACATGAGAATATAG+AGG - chr6_4:5754353-5754372 None:intergenic 25.0%
!! TATATATATTGAAAGGGCAT+GGG - chr6_4:5754471-5754490 None:intergenic 25.0%
! CAACACGTATATATATTGAA+AGG - chr6_4:5754478-5754497 None:intergenic 25.0%
!! TTCTGATTTTGAATTTGAGA+TGG + chr6_4:5754812-5754831 Msa0973280:three_prime_UTR 25.0%
AAAATCACAGATGAAACCAA+CGG - chr6_4:5748395-5748414 None:intergenic 30.0%
! ATTTTGTTGGTGTAACATGT+TGG + chr6_4:5748410-5748429 Msa0973280:CDS 30.0%
CTTTGCCAAGAAATTAAAAG+TGG - chr6_4:5748625-5748644 None:intergenic 30.0%
!!! CTTTTAATTTCTTGGCAAAG+AGG + chr6_4:5748625-5748644 Msa0973280:intron 30.0%
GCATGTTTAGATGTATGTTT+AGG + chr6_4:5748753-5748772 Msa0973280:intron 30.0%
GTATGCTTAGATGTATGTTT+AGG + chr6_4:5748779-5748798 Msa0973280:intron 30.0%
TTAGATGTATGTTTAGGCTT+TGG + chr6_4:5748785-5748804 Msa0973280:intron 30.0%
!! GTGAAGTTTGTTCAAGTTTT+TGG - chr6_4:5748831-5748850 None:intergenic 30.0%
ATGAGATTTGAGAAAAGAGT+GGG - chr6_4:5748978-5748997 None:intergenic 30.0%
!! GGATTTTGAAGAATAGAAAG+AGG - chr6_4:5749011-5749030 None:intergenic 30.0%
!! ACATTTTTGGAAGAGAACTA+CGG + chr6_4:5749067-5749086 Msa0973280:intron 30.0%
! GAATGTTCTAAGTGAAGAAT+TGG - chr6_4:5749182-5749201 None:intergenic 30.0%
TAACGACTATAGTATGCTAT+AGG - chr6_4:5749274-5749293 None:intergenic 30.0%
ATAGCATACTATAGTCGTTA+TGG + chr6_4:5749274-5749293 Msa0973280:intron 30.0%
TAGCATACTATAGTCGTTAT+GGG + chr6_4:5749275-5749294 Msa0973280:intron 30.0%
!!! CGGTGATATCTTATTTTTCT+TGG - chr6_4:5749375-5749394 None:intergenic 30.0%
!! TAAGATATCACCGGTTTAAA+AGG + chr6_4:5749382-5749401 Msa0973280:intron 30.0%
! TACGTTTGAACCTTTTAAAC+CGG - chr6_4:5749395-5749414 None:intergenic 30.0%
!! GTTGTTTTATCTTGGTTTTC+GGG - chr6_4:5749432-5749451 None:intergenic 30.0%
! TCATCAAGTGCATTGATATA+TGG - chr6_4:5749487-5749506 None:intergenic 30.0%
! CTTGATGACATAGATTGATA+TGG + chr6_4:5749499-5749518 Msa0973280:intron 30.0%
! ATCTCACTAAAGTTTTCAGT+TGG - chr6_4:5749585-5749604 None:intergenic 30.0%
TGCACAAAATGATACAGTAA+TGG + chr6_4:5749632-5749651 Msa0973280:intron 30.0%
TCATATGGTTGTTGTCATTA+AGG - chr6_4:5749780-5749799 None:intergenic 30.0%
ATGTCACTATATAACTTGAG+TGG + chr6_4:5749941-5749960 Msa0973280:intron 30.0%
CTGTAAGTATTTATGTCACT+TGG - chr6_4:5749994-5750013 None:intergenic 30.0%
ATTGTTGAAAAGCAACCTTA+AGG - chr6_4:5750141-5750160 None:intergenic 30.0%
CAGTCAAAAAATACTGAAAG+GGG + chr6_4:5750825-5750844 Msa0973280:intron 30.0%
ATCCCCAATATAATTACTAG+AGG + chr6_4:5751003-5751022 Msa0973280:intron 30.0%
GTATAAAAAGAGCTACCAAA+AGG - chr6_4:5751350-5751369 None:intergenic 30.0%
!!! GTTTTAAAAGAGCTACCAAA+AGG - chr6_4:5751419-5751438 None:intergenic 30.0%
!!! AATTTTTTTTTGTAGTGGCC+GGG - chr6_4:5751549-5751568 None:intergenic 30.0%
TTTCATATAAATTAGGCGTG+CGG + chr6_4:5751683-5751702 Msa0973280:intron 30.0%
TGCTCATGTAACAGAAATTA+AGG - chr6_4:5751844-5751863 None:intergenic 30.0%
ATTTCTGTTACATGAGCAAA+TGG + chr6_4:5751846-5751865 Msa0973280:intron 30.0%
TTATGGTTGTCTACCAATAT+TGG + chr6_4:5751873-5751892 Msa0973280:intron 30.0%
CTGACTATGATTACCAATAT+TGG - chr6_4:5751889-5751908 None:intergenic 30.0%
ATAATGTGGATGATTACGAT+TGG + chr6_4:5751941-5751960 Msa0973280:intron 30.0%
TAATGTGGATGATTACGATT+GGG + chr6_4:5751942-5751961 Msa0973280:intron 30.0%
!! TAGGGTAAAATGGGTTAAAA+GGG - chr6_4:5752068-5752087 None:intergenic 30.0%
AAAATGGTGTAGGGTAAAAT+GGG - chr6_4:5752077-5752096 None:intergenic 30.0%
AAAAATGGTGTAGGGTAAAA+TGG - chr6_4:5752078-5752097 None:intergenic 30.0%
GTAAACTAGAAAAATGGTGT+AGG - chr6_4:5752087-5752106 None:intergenic 30.0%
TCTAGAGAAAAAACAATGAC+TGG + chr6_4:5752196-5752215 Msa0973280:intron 30.0%
!!! ATGTGTTTTTTTTCTCTTGC+TGG + chr6_4:5752262-5752281 Msa0973280:intron 30.0%
GAAGTAAGAGATAGAAATCT+TGG + chr6_4:5752304-5752323 Msa0973280:intron 30.0%
GAGTTTGTGGTTGTATTTAA+AGG + chr6_4:5752494-5752513 Msa0973280:intron 30.0%
TCCTTAAAAAAAAGAGAGGA+TGG + chr6_4:5752586-5752605 Msa0973280:intron 30.0%
!!! ACCATCCTCTCTTTTTTTTA+AGG - chr6_4:5752590-5752609 None:intergenic 30.0%
!!! GAAGCTTAACATTGTTTTGA+AGG + chr6_4:5752676-5752695 Msa0973280:intron 30.0%
CAATAAACATATATAGGAGG+GGG - chr6_4:5752722-5752741 None:intergenic 30.0%
AACTCTATGTGACCTTAATT+TGG + chr6_4:5752848-5752867 Msa0973280:intron 30.0%
CAACATCTTCACTTCTTAAT+TGG - chr6_4:5752875-5752894 None:intergenic 30.0%
TTGTAGAGATATTACGTAAG+AGG - chr6_4:5753256-5753275 None:intergenic 30.0%
! TGTAATTTGTCATTACTTGG+CGG - chr6_4:5753345-5753364 None:intergenic 30.0%
!! AGATTGATTTTGTGCTTTAG+TGG + chr6_4:5753364-5753383 Msa0973280:intron 30.0%
!!! GATTAGCTTTTGGAGAATTT+TGG - chr6_4:5753701-5753720 None:intergenic 30.0%
TAAATGGAAGGAGTAAATGT+TGG + chr6_4:5753837-5753856 Msa0973280:intron 30.0%
AAATGGAAGGAGTAAATGTT+GGG + chr6_4:5753838-5753857 Msa0973280:intron 30.0%
CTTCATGTCACATGTAAATT+TGG + chr6_4:5753891-5753910 Msa0973280:intron 30.0%
!!! TTGGTTTTATCACTAGCATT+AGG + chr6_4:5753910-5753929 Msa0973280:intron 30.0%
AAAGATGAAAATTGCATGCA+TGG + chr6_4:5753985-5754004 Msa0973280:intron 30.0%
TGTTGATCTACAGGATAAAT+TGG - chr6_4:5754127-5754146 None:intergenic 30.0%
CAAACAAATTCAATCACATG+GGG - chr6_4:5754222-5754241 None:intergenic 30.0%
AAAACATGAGAATATAGAGG+AGG - chr6_4:5754350-5754369 None:intergenic 30.0%
!!! TCTCATGTTTTGTTTTGTTG+TGG + chr6_4:5754359-5754378 Msa0973280:intron 30.0%
AAGACATAGTTCAACAACTA+CGG - chr6_4:5754427-5754446 None:intergenic 30.0%
! ATATATATTGAAAGGGCATG+GGG - chr6_4:5754470-5754489 None:intergenic 30.0%
GTATATATATTGAAAGGGCA+TGG - chr6_4:5754472-5754491 None:intergenic 30.0%
! TTCATCCTTGATTGAGTTTT+AGG + chr6_4:5754706-5754725 Msa0973280:exon 30.0%
ATGAACCTAAAACTCAATCA+AGG - chr6_4:5754714-5754733 None:intergenic 30.0%
TGATGGAGAAATCAATTGAT+TGG + chr6_4:5754738-5754757 Msa0973280:three_prime_UTR 30.0%
! AGCAAAACTTGAACAGATTT+TGG - chr6_4:5754930-5754949 None:intergenic 30.0%
TGAAAACTGTGAAGAAGAGA+AGG - chr6_4:5748249-5748268 None:intergenic 35.0%
! TCTTCACAGTTTTCACTTTC+TGG + chr6_4:5748254-5748273 Msa0973280:CDS 35.0%
! CTTCACAGTTTTCACTTTCT+GGG + chr6_4:5748255-5748274 Msa0973280:CDS 35.0%
TACGTTGTCTTCTTCAACTT+GGG - chr6_4:5748296-5748315 None:intergenic 35.0%
TTACGTTGTCTTCTTCAACT+TGG - chr6_4:5748297-5748316 None:intergenic 35.0%
! CAAGGTATTCAACAAAACCT+AGG + chr6_4:5748325-5748344 Msa0973280:CDS 35.0%
CCATGAAGAGATTTGACTAT+CGG - chr6_4:5748356-5748375 None:intergenic 35.0%
AAATTCAACAACAGAACCGT+TGG + chr6_4:5748376-5748395 Msa0973280:CDS 35.0%
! GGTTTCATCTGTGATTTTGT+TGG + chr6_4:5748397-5748416 Msa0973280:CDS 35.0%
! TGTTAGAGAGAATCGTGTTT+TGG + chr6_4:5748435-5748454 Msa0973280:CDS 35.0%
! GTTAGAGAGAATCGTGTTTT+GGG + chr6_4:5748436-5748455 Msa0973280:CDS 35.0%
CATACCCTAGATACATTCTA+TGG - chr6_4:5748651-5748670 None:intergenic 35.0%
! GTATCTAGGGTATGATGTAA+AGG + chr6_4:5748657-5748676 Msa0973280:intron 35.0%
TGAGATTTGAGAAAAGAGTG+GGG - chr6_4:5748977-5748996 None:intergenic 35.0%
CATGAGATTTGAGAAAAGAG+TGG - chr6_4:5748979-5748998 None:intergenic 35.0%
! GTTCTAAGTGAAGAATTGGA+GGG - chr6_4:5749178-5749197 None:intergenic 35.0%
! TGTTCTAAGTGAAGAATTGG+AGG - chr6_4:5749179-5749198 None:intergenic 35.0%
ACAACTGACATATAACGTGA+CGG + chr6_4:5749447-5749466 Msa0973280:intron 35.0%
! TCAAGTGCATTGATATATGG+TGG - chr6_4:5749484-5749503 None:intergenic 35.0%
CATAGATTGATATGGATGAG+TGG + chr6_4:5749507-5749526 Msa0973280:intron 35.0%
! AAGTTTTCAGTTGGATCAGT+TGG - chr6_4:5749576-5749595 None:intergenic 35.0%
!! TAAGGATGTCTTGGATTAGT+GGG - chr6_4:5749762-5749781 None:intergenic 35.0%
! TTAAGGATGTCTTGGATTAG+TGG - chr6_4:5749763-5749782 None:intergenic 35.0%
TGTTGTCATTAAGGATGTCT+TGG - chr6_4:5749771-5749790 None:intergenic 35.0%
CAACCATATGAAAAGACCTT+AGG + chr6_4:5749789-5749808 Msa0973280:intron 35.0%
! ACACCTAAGGTCTTTTCATA+TGG - chr6_4:5749795-5749814 None:intergenic 35.0%
AATCAAAGACATGACACCTA+AGG - chr6_4:5749808-5749827 None:intergenic 35.0%
ACTTGGTTGCATATCGTTAA+AGG - chr6_4:5749977-5749996 None:intergenic 35.0%
TTACAGTCATTTCCTGAGTT+AGG + chr6_4:5750008-5750027 Msa0973280:intron 35.0%
TATGACATACATCCTAACTC+AGG - chr6_4:5750023-5750042 None:intergenic 35.0%
ACATCAGAGATCTGACAATT+TGG - chr6_4:5750087-5750106 None:intergenic 35.0%
AAATCCTATAGACAAAGCGT+AGG + chr6_4:5750245-5750264 Msa0973280:intron 35.0%
! TTTTCCTACGCTTTGTCTAT+AGG - chr6_4:5750252-5750271 None:intergenic 35.0%
! AAACCTTTTGTGACATCTGA+AGG + chr6_4:5750389-5750408 Msa0973280:intron 35.0%
TATCCTTCAGATGTCACAAA+AGG - chr6_4:5750395-5750414 None:intergenic 35.0%
TTTAGCGATGAAAGATCTTG+GGG - chr6_4:5750466-5750485 None:intergenic 35.0%
GTTTAGCGATGAAAGATCTT+GGG - chr6_4:5750467-5750486 None:intergenic 35.0%
AGTTTAGCGATGAAAGATCT+TGG - chr6_4:5750468-5750487 None:intergenic 35.0%
TAAATTTACTCCCACTGAGA+CGG + chr6_4:5750573-5750592 Msa0973280:intron 35.0%
! ATTTGAGAGCGATCATCTTT+TGG + chr6_4:5750651-5750670 Msa0973280:intron 35.0%
! TTTGAGAGCGATCATCTTTT+GGG + chr6_4:5750652-5750671 Msa0973280:intron 35.0%
! TAGAGGATGGGAGTATAATT+GGG + chr6_4:5750943-5750962 Msa0973280:intron 35.0%
! TGGTAGCTCTTTTTATACAG+AGG + chr6_4:5751352-5751371 Msa0973280:intron 35.0%
! AGCTCTTTTTATACAGAGGA+TGG + chr6_4:5751356-5751375 Msa0973280:intron 35.0%
! GCTCTTTTTATACAGAGGAT+GGG + chr6_4:5751357-5751376 Msa0973280:intron 35.0%
!!! ATTTTTTTTTGTAGTGGCCG+GGG - chr6_4:5751548-5751567 None:intergenic 35.0%
GCTATCCAGCTATGTTATTA+TGG + chr6_4:5751733-5751752 Msa0973280:intron 35.0%
! GGGTTAAAAGGGTTTGAAAT+AGG - chr6_4:5752057-5752076 None:intergenic 35.0%
!! GTAGGGTAAAATGGGTTAAA+AGG - chr6_4:5752069-5752088 None:intergenic 35.0%
ACCATACATCATTCTTGTAG+AGG + chr6_4:5752105-5752124 Msa0973280:intron 35.0%
ACCTCTACAAGAATGATGTA+TGG - chr6_4:5752109-5752128 None:intergenic 35.0%
TACATCATTCTTGTAGAGGT+AGG + chr6_4:5752109-5752128 Msa0973280:intron 35.0%
!! TCCAATGCACCGATTAAATT+TGG + chr6_4:5752132-5752151 Msa0973280:intron 35.0%
TCCAAATTTAATCGGTGCAT+TGG - chr6_4:5752136-5752155 None:intergenic 35.0%
!! ATGCACCGATTAAATTTGGA+AGG + chr6_4:5752136-5752155 Msa0973280:intron 35.0%
CCTTGCCTTCCAAATTTAAT+CGG - chr6_4:5752144-5752163 None:intergenic 35.0%
CGATTAAATTTGGAAGGCAA+GGG + chr6_4:5752142-5752161 Msa0973280:intron 35.0%
GATTAAATTTGGAAGGCAAG+GGG + chr6_4:5752143-5752162 Msa0973280:intron 35.0%
ATTAAATTTGGAAGGCAAGG+GGG + chr6_4:5752144-5752163 Msa0973280:intron 35.0%
!!! GTTTTTTCTCTAGAAGCATC+TGG - chr6_4:5752190-5752209 None:intergenic 35.0%
TGTTCAGTGTATTATGACGA+AGG + chr6_4:5752232-5752251 Msa0973280:intron 35.0%
GAAAAAGTTTCTCGGATAGT+TGG - chr6_4:5752343-5752362 None:intergenic 35.0%
!!! ATCCGAGAAACTTTTTCAGA+AGG + chr6_4:5752346-5752365 Msa0973280:intron 35.0%
!!! TCCGAGAAACTTTTTCAGAA+GGG + chr6_4:5752347-5752366 Msa0973280:intron 35.0%
! TCCCTTCTGAAAAAGTTTCT+CGG - chr6_4:5752351-5752370 None:intergenic 35.0%
!!! AAACTTTTTCAGAAGGGAAG+AGG + chr6_4:5752353-5752372 Msa0973280:intron 35.0%
! TGTTTTCTTCTTTGGTGAAG+TGG + chr6_4:5752469-5752488 Msa0973280:intron 35.0%
! GTTTTCTTCTTTGGTGAAGT+GGG + chr6_4:5752470-5752489 Msa0973280:intron 35.0%
GTGGTTGTATTTAAAGGGAA+TGG + chr6_4:5752500-5752519 Msa0973280:intron 35.0%
TGTATTTAAAGGGAATGGTG+TGG + chr6_4:5752505-5752524 Msa0973280:intron 35.0%
!!! TTGTTTTGAAGGGATTGTAG+AGG + chr6_4:5752687-5752706 Msa0973280:intron 35.0%
! TTGATTTTGTGCTTTAGTGG+TGG + chr6_4:5753367-5753386 Msa0973280:intron 35.0%
CAAAAGATAAAAGCCATTCC+TGG + chr6_4:5754101-5754120 Msa0973280:intron 35.0%
TATCCTGTAGATCAACATTC+TGG + chr6_4:5754130-5754149 Msa0973280:intron 35.0%
AGTTGTTGAACTATGTCTTG+CGG + chr6_4:5754428-5754447 Msa0973280:intron 35.0%
!!! AAAGTTGGCGTTTTAAGGTT+AGG + chr6_4:5754646-5754665 Msa0973280:CDS 35.0%
! TTTAAGGTTAGGTTTCATCG+CGG + chr6_4:5754657-5754676 Msa0973280:CDS 35.0%
!!! GTTTTAGGTTCATTCTGTGA+TGG + chr6_4:5754721-5754740 Msa0973280:three_prime_UTR 35.0%
TGGAGAAATCAATTGATTGG+TGG + chr6_4:5754741-5754760 Msa0973280:three_prime_UTR 35.0%
AAACCTCACTGATATCACTT+TGG + chr6_4:5754789-5754808 Msa0973280:three_prime_UTR 35.0%
GAGTTTCGACAAACAATCAA+TGG - chr6_4:5754844-5754863 None:intergenic 35.0%
GATCAGGATTCAAAAAGGTT+GGG - chr6_4:5754905-5754924 None:intergenic 35.0%
TGATCAGGATTCAAAAAGGT+TGG - chr6_4:5754906-5754925 None:intergenic 35.0%
TGGTTGATCAGGATTCAAAA+AGG - chr6_4:5754910-5754929 None:intergenic 35.0%
!!! TGAACAGATTTTGGTTGATC+AGG - chr6_4:5754921-5754940 None:intergenic 35.0%
!! AGTTTTGCTGATTGATGAGA+AGG + chr6_4:5754941-5754960 Msa0973280:three_prime_UTR 35.0%
GACAACGTAAGATGTCTTCA+AGG + chr6_4:5748307-5748326 Msa0973280:CDS 40.0%
TTTGACTATCGGAGTTTCCT+AGG - chr6_4:5748345-5748364 None:intergenic 40.0%
CCGATAGTCAAATCTCTTCA+TGG + chr6_4:5748353-5748372 Msa0973280:CDS 40.0%
!!! AGAGAATCGTGTTTTGGGTT+TGG + chr6_4:5748441-5748460 Msa0973280:CDS 40.0%
! CTGAAAAGCATGAAGCTTTC+TGG + chr6_4:5748466-5748485 Msa0973280:CDS 40.0%
AGAGGCCATAGAATGTATCT+AGG + chr6_4:5748643-5748662 Msa0973280:intron 40.0%
GAGGCCATAGAATGTATCTA+GGG + chr6_4:5748644-5748663 Msa0973280:intron 40.0%
GGGTATGATGTAAAGGACAA+TGG + chr6_4:5748664-5748683 Msa0973280:intron 40.0%
AGAATAGAAAGAGGCCTCAA+GGG - chr6_4:5749002-5749021 None:intergenic 40.0%
AAGAATAGAAAGAGGCCTCA+AGG - chr6_4:5749003-5749022 None:intergenic 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG + chr6_4:5749070-5749089 Msa0973280:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG + chr6_4:5749088-5749107 Msa0973280:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG + chr6_4:5749089-5749108 Msa0973280:intron 40.0%
! CATTTAAAATAAAGCGCGCG+CGG + chr6_4:5749230-5749249 Msa0973280:intron 40.0%
ATTGATATATGGTGGTCGTC+GGG - chr6_4:5749476-5749495 None:intergenic 40.0%
CATTGATATATGGTGGTCGT+CGG - chr6_4:5749477-5749496 None:intergenic 40.0%
ATTGATATGGATGAGTGGCA+TGG + chr6_4:5749512-5749531 Msa0973280:intron 40.0%
CTGCAGAAGTAAAGTTCATG+AGG - chr6_4:5749673-5749692 None:intergenic 40.0%
! GGTGTCATGTCTTTGATTAG+TGG + chr6_4:5749810-5749829 Msa0973280:intron 40.0%
! TTGTGTCAGACTCTGACTTT+TGG - chr6_4:5750055-5750074 None:intergenic 40.0%
! CTAGAGGATGGGAGTATAAT+TGG + chr6_4:5750942-5750961 Msa0973280:intron 40.0%
! AGAGGATGGGAGTATAATTG+GGG + chr6_4:5750944-5750963 Msa0973280:intron 40.0%
GTATAAGTGCAAAAAGGGAG+AGG + chr6_4:5751249-5751268 Msa0973280:intron 40.0%
CGTGCACCAAATTATGATGA+AGG - chr6_4:5751315-5751334 None:intergenic 40.0%
AAGAGCTACCAAAAGGAGAA+AGG - chr6_4:5751343-5751362 None:intergenic 40.0%
AAGAGCTACCAAAAGGAGAA+AGG - chr6_4:5751343-5751362 None:intergenic 40.0%
CATAGAATATGCAAGGTTCG+TGG + chr6_4:5751516-5751535 Msa0973280:intron 40.0%
CATGAGCAAATGGCAAGTTA+TGG + chr6_4:5751856-5751875 Msa0973280:intron 40.0%
AGAGAGACAGAGAGATAAGA+GGG - chr6_4:5751983-5752002 None:intergenic 40.0%
CCGATTAAATTTGGAAGGCA+AGG + chr6_4:5752141-5752160 Msa0973280:intron 40.0%
AAAGGGAATGGTGTGGTTAA+TGG + chr6_4:5752512-5752531 Msa0973280:intron 40.0%
GTAAATAAGCAGGATGTCTG+AGG + chr6_4:5753218-5753237 Msa0973280:intron 40.0%
TCACTAGCATTAGGATATCG+TGG + chr6_4:5753919-5753938 Msa0973280:intron 40.0%
CACTAGCATTAGGATATCGT+GGG + chr6_4:5753920-5753939 Msa0973280:intron 40.0%
ATCTACAGGATAAATTGGCC+AGG - chr6_4:5754122-5754141 None:intergenic 40.0%
CTGTAGATCAACATTCTGGT+GGG + chr6_4:5754134-5754153 Msa0973280:intron 40.0%
! ATTTCGAGTGCCGTAAATTC+CGG + chr6_4:5754190-5754209 Msa0973280:intron 40.0%
AAGATGACGTACAAATACGC+TGG - chr6_4:5754327-5754346 None:intergenic 40.0%
TGTACTTGATCTGTGTGTGT+CGG + chr6_4:5754383-5754402 Msa0973280:intron 40.0%
GAGATGTGAAGAACGAAAGT+CGG - chr6_4:5754528-5754547 None:intergenic 40.0%
ACATCTCTCATATCTGTGTG+TGG + chr6_4:5754541-5754560 Msa0973280:intron 40.0%
! TCCAGTTCCATTTTCTGTGA+TGG + chr6_4:5754581-5754600 Msa0973280:intron 40.0%
TCCATCACAGAAAATGGAAC+TGG - chr6_4:5754585-5754604 None:intergenic 40.0%
GAGTTCTCCATCACAGAAAA+TGG - chr6_4:5754591-5754610 None:intergenic 40.0%
! CTCCTTTGATTCGTTGTCTA+AGG + chr6_4:5754608-5754627 Msa0973280:CDS 40.0%
CACCTTAGACAACGAATCAA+AGG - chr6_4:5754613-5754632 None:intergenic 40.0%
! AAGGGAAAGTTGGCGTTTTA+AGG + chr6_4:5754641-5754660 Msa0973280:CDS 40.0%
TGGTTGTTGTGTTCGTTGTT+TGG + chr6_4:5754682-5754701 Msa0973280:CDS 40.0%
GAACCAAAGTGATATCAGTG+AGG - chr6_4:5754795-5754814 None:intergenic 40.0%
TGTTTGTCGAAACTCTGATG+TGG + chr6_4:5754849-5754868 Msa0973280:three_prime_UTR 40.0%
AGTGATGTGTGTGCATGTGT+CGG - chr6_4:5748718-5748737 None:intergenic 45.0%
TCTCAAATCTCATGCCCTTG+AGG + chr6_4:5748985-5749004 Msa0973280:intron 45.0%
TTGCCTACGTACCCGTTTAA+GGG - chr6_4:5749103-5749122 None:intergenic 45.0%
CGCGCGGTAGAATATAAAGA+CGG + chr6_4:5749246-5749265 Msa0973280:intron 45.0%
AGCAAAACCCTTGAGAATCG+AGG - chr6_4:5749338-5749357 None:intergenic 45.0%
TTGATATATGGTGGTCGTCG+GGG - chr6_4:5749475-5749494 None:intergenic 45.0%
! ACGCTTGACCTTTCTCCTTT+TGG + chr6_4:5751332-5751351 Msa0973280:intron 45.0%
! ACGCTTGACCTTTCTCCTTT+TGG + chr6_4:5751332-5751351 Msa0973280:intron 45.0%
CCAACTGAACTAAACTCACG+AGG - chr6_4:5751485-5751504 None:intergenic 45.0%
! CCTCGTGAGTTTAGTTCAGT+TGG + chr6_4:5751482-5751501 Msa0973280:intron 45.0%
GAGAGACAGAGAGATAAGAG+GGG - chr6_4:5751982-5752001 None:intergenic 45.0%
CAGAGAGACAGAGAGATAAG+AGG - chr6_4:5751984-5752003 None:intergenic 45.0%
CTCTTATCTCTCTGTCTCTC+TGG + chr6_4:5751982-5752001 Msa0973280:intron 45.0%
! TCTCTGTCTCTCTGGATTAG+TGG + chr6_4:5751990-5752009 Msa0973280:intron 45.0%
! TTCTCTTGCTGGTCTCAACA+AGG + chr6_4:5752273-5752292 Msa0973280:intron 45.0%
! GTCATTACTTGGCGGATCAA+AGG - chr6_4:5753337-5753356 None:intergenic 45.0%
! TGTGCTTTAGTGGTGGAAGT+AGG + chr6_4:5753374-5753393 Msa0973280:intron 45.0%
CAGGATAAATTGGCCAGGAA+TGG - chr6_4:5754117-5754136 None:intergenic 45.0%
CCACCAGAATGTTGATCTAC+AGG - chr6_4:5754136-5754155 None:intergenic 45.0%
CCTGTAGATCAACATTCTGG+TGG + chr6_4:5754133-5754152 Msa0973280:intron 45.0%
!!! CTAGGGTTCAGGCTTTGTTT+TGG + chr6_4:5754273-5754292 Msa0973280:intron 45.0%
GTACTTGATCTGTGTGTGTC+GGG + chr6_4:5754384-5754403 Msa0973280:intron 45.0%
AAAACGCCAACTTTCCCTTC+CGG - chr6_4:5754640-5754659 None:intergenic 45.0%
CGAAACTCTGATGTGGTTCA+TGG + chr6_4:5754856-5754875 Msa0973280:three_prime_UTR 45.0%
ACTCTGATGTGGTTCATGGT+AGG + chr6_4:5754860-5754879 Msa0973280:three_prime_UTR 45.0%
CTCTGATGTGGTTCATGGTA+GGG + chr6_4:5754861-5754880 Msa0973280:three_prime_UTR 45.0%
!! TTTAAAAAAAATCATAAATA+TGG + chr6_4:5753532-5753551 Msa0973280:intron 5.0%
!! TCAATGGGGTTTTGACCCCA+AGG - chr6_4:5748875-5748894 None:intergenic 50.0%
GATCCCTTAAACGGGTACGT+AGG + chr6_4:5749097-5749116 Msa0973280:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG - chr6_4:5749104-5749123 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG + chr6_4:5749102-5749121 Msa0973280:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG - chr6_4:5749303-5749322 None:intergenic 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG - chr6_4:5749310-5749329 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - chr6_4:5749315-5749334 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG - chr6_4:5749333-5749352 None:intergenic 50.0%
TTACTCCCACTGAGACGGTT+TGG + chr6_4:5750578-5750597 Msa0973280:intron 50.0%
TACTCCCACTGAGACGGTTT+GGG + chr6_4:5750579-5750598 Msa0973280:intron 50.0%
TATCCCCAAACCGTCTCAGT+GGG - chr6_4:5750586-5750605 None:intergenic 50.0%
ATATCCCCAAACCGTCTCAG+TGG - chr6_4:5750587-5750606 None:intergenic 50.0%
AAGGTTCGTGGTTCAAACCC+CGG + chr6_4:5751528-5751547 Msa0973280:intron 50.0%
GGCTAGACAAAGAGTGACGA+CGG + chr6_4:5752374-5752393 Msa0973280:intron 50.0%
GCTAGACAAAGAGTGACGAC+GGG + chr6_4:5752375-5752394 Msa0973280:intron 50.0%
TGGTGAAGTGGGTGAGTTTG+TGG + chr6_4:5752481-5752500 Msa0973280:intron 50.0%
GGTTTGTGTGAGTGTGTGTG+TGG + chr6_4:5752607-5752626 Msa0973280:intron 50.0%
TTGTGTGAGTGTGTGTGTGG+TGG + chr6_4:5752610-5752629 Msa0973280:intron 50.0%
TGTGTGAGTGTGTGTGTGGT+GGG + chr6_4:5752611-5752630 Msa0973280:intron 50.0%
! GTATGTGGATTTTCGGCGTG+AGG + chr6_4:5754241-5754260 Msa0973280:intron 50.0%
! TCGTTGTCTAAGGTGATGCC+CGG + chr6_4:5754618-5754637 Msa0973280:CDS 50.0%
AAACGCCAACTTTCCCTTCC+GGG - chr6_4:5754639-5754658 None:intergenic 50.0%
TGGTTCATGGTAGGGAGACA+TGG + chr6_4:5754869-5754888 Msa0973280:three_prime_UTR 50.0%
! GCATGTGTCGGTGCTTGTGT+CGG - chr6_4:5748706-5748725 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - chr6_4:5749314-5749333 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + chr6_4:5749311-5749330 Msa0973280:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG + chr6_4:5749328-5749347 Msa0973280:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - chr6_4:5749332-5749351 None:intergenic 55.0%
ACTCCCACTGAGACGGTTTG+GGG + chr6_4:5750580-5750599 Msa0973280:intron 55.0%
GTGTGAGTGTGTGTGTGGTG+GGG + chr6_4:5752612-5752631 Msa0973280:intron 55.0%
TGGGGGGTAGGTGGTATAAG+AGG + chr6_4:5752635-5752654 Msa0973280:intron 55.0%
! TCGAGTGCCGTAAATTCCGG+TGG + chr6_4:5754193-5754212 Msa0973280:intron 55.0%
GGGGTAGCCACCGGAATTTA+CGG - chr6_4:5754203-5754222 None:intergenic 55.0%
CAATCACATGGGGTAGCCAC+CGG - chr6_4:5754212-5754231 None:intergenic 55.0%
! TGGATTTTCGGCGTGAGGCA+TGG + chr6_4:5754246-5754265 Msa0973280:intron 55.0%
GCGTGAGGCATGGTTGTCTA+GGG + chr6_4:5754256-5754275 Msa0973280:intron 55.0%
! GGCATGGTTGTCTAGGGTTC+AGG + chr6_4:5754262-5754281 Msa0973280:intron 55.0%
! TGTCTAAGGTGATGCCCGGA+AGG + chr6_4:5754622-5754641 Msa0973280:CDS 55.0%
! GTCTAAGGTGATGCCCGGAA+GGG + chr6_4:5754623-5754642 Msa0973280:CDS 55.0%
TGATGCCCGGAAGGGAAAGT+TGG + chr6_4:5754631-5754650 Msa0973280:CDS 55.0%
GGTTAGGTTTCATCGCGGAC+TGG + chr6_4:5754662-5754681 Msa0973280:CDS 55.0%
CTCCCGGACCTCGATTCTCA+AGG + chr6_4:5749327-5749346 Msa0973280:intron 60.0%
! TGAGTGTGTGTGTGGTGGGG+TGG + chr6_4:5752615-5752634 Msa0973280:intron 60.0%
! GAGTGTGTGTGTGGTGGGGT+GGG + chr6_4:5752616-5752635 Msa0973280:intron 60.0%
! AGTGTGTGTGTGGTGGGGTG+GGG + chr6_4:5752617-5752636 Msa0973280:intron 60.0%
GGCGTGAGGCATGGTTGTCT+AGG + chr6_4:5754255-5754274 Msa0973280:intron 60.0%
! GTGTGTGTGTGGTGGGGTGG+GGG + chr6_4:5752618-5752637 Msa0973280:intron 65.0%
! TGTGTGTGTGGTGGGGTGGG+GGG + chr6_4:5752619-5752638 Msa0973280:intron 65.0%
! TGTGTGGTGGGGTGGGGGGT+AGG + chr6_4:5752623-5752642 Msa0973280:intron 70.0%
! GTGGTGGGGTGGGGGGTAGG+TGG + chr6_4:5752626-5752645 Msa0973280:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5748229 5755061 5748229 ID=Msa0973280;Name=Msa0973280
chr6_4 mRNA 5748229 5755061 5748229 ID=Msa0973280-mRNA-1;Parent=Msa0973280;Name=Msa0973280-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0.5|0.5|1|1|2|345|129
chr6_4 exon 5748229 5748487 5748229 ID=Msa0973280-mRNA-1:exon:2417;Parent=Msa0973280-mRNA-1
chr6_4 exon 5754586 5755061 5754586 ID=Msa0973280-mRNA-1:exon:2418;Parent=Msa0973280-mRNA-1
chr6_4 CDS 5748229 5748487 5748229 ID=Msa0973280-mRNA-1:cds;Parent=Msa0973280-mRNA-1
chr6_4 CDS 5754586 5754716 5754586 ID=Msa0973280-mRNA-1:cds;Parent=Msa0973280-mRNA-1
chr6_4 three_prime_UTR 5754717 5755061 5754717 ID=Msa0973280-mRNA-1:three_prime_utr;Parent=Msa0973280-mRNA-1
Gene Sequence

>Msa0973280

ATGTCTTCATCACTGTTCCTTCTCTTCTTCACAGTTTTCACTTTCTGGGTCACTTTATCTTCATCCCAAGTTGAAGAAGACAACGTAAGATGTCTTCAAGGTATTCAACAAAACCTAGGAAACTCCGATAGTCAAATCTCTTCATGGAAATTCAACAACAGAACCGTTGGTTTCATCTGTGATTTTGTTGGTGTAACATGTTGGAATGTTAGAGAGAATCGTGTTTTGGGTTTGGAGCTGAAAAGCATGAAGCTTTCTGTTCCATTTTCTGTGATGGAGAACTCCTTTGATTCGTTGTCTAAGGTGATGCCCGGAAGGGAAAGTTGGCGTTTTAAGGTTAGGTTTCATCGCGGACTGGTTGTTGTGTTCGTTGTTTGGTTTCATCCTTGA

Protein sequence

>Msa0973280

MSSSLFLLFFTVFTFWVTLSSSQVEEDNVRCLQGIQQNLGNSDSQISSWKFNNRTVGFICDFVGVTCWNVRENRVLGLELKSMKLSVPFSVMENSFDSLSKVMPGRESWRFKVRFHRGLVVVFVVWFHP*