Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559510 | XP_003608349.1 | 95.872 | 533 | 22 | 0 | 1 | 533 | 1 | 533 | 0.0 | 974 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559510 | sp|Q8H1D7|GTE5_ARATH | 38.083 | 386 | 184 | 11 | 55 | 420 | 49 | 399 | 1.85e-57 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559510 | G7JU12 | 95.872 | 533 | 22 | 0 | 1 | 533 | 1 | 533 | 0.0 | 974 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0559510 | 0.812568 | 3.971775e-51 | -8.615850e-47 |
| Msa0006510 | Msa0559510 | 0.826841 | 2.173949e-54 | -8.615850e-47 |
| Msa0035120 | Msa0559510 | 0.806665 | 7.365281e-50 | -8.615850e-47 |
| Msa0042550 | Msa0559510 | 0.806951 | 6.410840e-50 | -8.615850e-47 |
| Msa0054820 | Msa0559510 | 0.805507 | 1.291076e-49 | -8.615850e-47 |
| Msa0056450 | Msa0559510 | 0.814933 | 1.197002e-51 | -8.615850e-47 |
| Msa0064110 | Msa0559510 | 0.803725 | 3.039514e-49 | -8.615850e-47 |
| Msa0076700 | Msa0559510 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
| Msa0092410 | Msa0559510 | 0.808289 | 3.331781e-50 | -8.615850e-47 |
| Msa0143850 | Msa0559510 | 0.820420 | 6.923348e-53 | -8.615850e-47 |
| Msa0167850 | Msa0559510 | 0.808733 | 2.679455e-50 | -8.615850e-47 |
| Msa0178510 | Msa0559510 | 0.811876 | 5.623451e-51 | -8.615850e-47 |
| Msa0183760 | Msa0559510 | 0.804670 | 1.932801e-49 | -8.615850e-47 |
| Msa0187030 | Msa0559510 | 0.844014 | 9.827507e-59 | -8.615850e-47 |
| Msa0187830 | Msa0559510 | 0.872925 | 2.186730e-67 | -8.615850e-47 |
| Msa0191890 | Msa0559510 | 0.809554 | 1.786943e-50 | -8.615850e-47 |
| Msa0225220 | Msa0559510 | 0.808665 | 2.770637e-50 | -8.615850e-47 |
| Msa0227340 | Msa0559510 | 0.816218 | 6.195024e-52 | -8.615850e-47 |
| Msa0379610 | Msa0559510 | 0.828540 | 8.494191e-55 | -8.615850e-47 |
| Msa0394140 | Msa0559510 | 0.864396 | 1.253406e-64 | -8.615850e-47 |
| Msa0398200 | Msa0559510 | 0.816909 | 4.336610e-52 | -8.615850e-47 |
| Msa0419670 | Msa0559510 | 0.820886 | 5.410769e-53 | -8.615850e-47 |
| Msa0429090 | Msa0559510 | 0.808064 | 3.721375e-50 | -8.615850e-47 |
| Msa0432670 | Msa0559510 | 0.815477 | 9.061608e-52 | -8.615850e-47 |
| Msa0463270 | Msa0559510 | 0.803768 | 2.977637e-49 | -8.615850e-47 |
| Msa0475500 | Msa0559510 | 0.821964 | 3.050592e-53 | -8.615850e-47 |
| Msa0264830 | Msa0559510 | 0.829590 | 4.726613e-55 | -8.615850e-47 |
| Msa0265150 | Msa0559510 | 0.800979 | 1.117573e-48 | -8.615850e-47 |
| Msa0269560 | Msa0559510 | 0.816103 | 6.571345e-52 | -8.615850e-47 |
| Msa0271550 | Msa0559510 | 0.808483 | 3.029048e-50 | -8.615850e-47 |
| Msa0302870 | Msa0559510 | 0.822048 | 2.917866e-53 | -8.615850e-47 |
| Msa0304100 | Msa0559510 | 0.812590 | 3.926695e-51 | -8.615850e-47 |
| Msa0305330 | Msa0559510 | 0.832928 | 7.145806e-56 | -8.615850e-47 |
| Msa0308460 | Msa0559510 | 0.837083 | 6.407403e-57 | -8.615850e-47 |
| Msa0312530 | Msa0559510 | 0.802395 | 5.726775e-49 | -8.615850e-47 |
| Msa0314000 | Msa0559510 | 0.810073 | 1.381525e-50 | -8.615850e-47 |
| Msa0317740 | Msa0559510 | 0.810197 | 1.299045e-50 | -8.615850e-47 |
| Msa0340340 | Msa0559510 | 0.825594 | 4.304697e-54 | -8.615850e-47 |
| Msa0506860 | Msa0559510 | 0.822185 | 2.711255e-53 | -8.615850e-47 |
| Msa0526070 | Msa0559510 | -0.817652 | 2.950924e-52 | -8.615850e-47 |
| Msa0559500 | Msa0559510 | 0.934711 | 2.642569e-96 | -8.615850e-47 |
| Msa0559510 | Msa0562570 | 0.817611 | 3.014890e-52 | -8.615850e-47 |
| Msa0559510 | Msa0579660 | 0.831964 | 1.238641e-55 | -8.615850e-47 |
| Msa0559510 | Msa0580520 | 0.803981 | 2.689361e-49 | -8.615850e-47 |
| Msa0559510 | Msa0613700 | 0.885649 | 6.778397e-72 | -8.615850e-47 |
| Msa0559510 | Msa0613710 | 0.931067 | 6.521333e-94 | -8.615850e-47 |
| Msa0559510 | Msa0622170 | -0.816007 | 6.902877e-52 | -8.615850e-47 |
| Msa0559510 | Msa0625190 | 0.800451 | 1.432183e-48 | -8.615850e-47 |
| Msa0559510 | Msa0645970 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0559510 | Msa0657660 | 0.800857 | 1.183671e-48 | -8.615850e-47 |
| Msa0559510 | Msa0661320 | 0.813297 | 2.749043e-51 | -8.615850e-47 |
| Msa0559510 | Msa0689760 | 0.824369 | 8.380116e-54 | -8.615850e-47 |
| Msa0559510 | Msa0696850 | 0.860413 | 2.101638e-63 | -8.615850e-47 |
| Msa0559510 | Msa0696860 | 0.827029 | 1.960604e-54 | -8.615850e-47 |
| Msa0559510 | Msa0698290 | 0.822589 | 2.184768e-53 | -8.615850e-47 |
| Msa0559510 | Msa0708310 | 0.812327 | 4.482174e-51 | -8.615850e-47 |
| Msa0559510 | Msa0716860 | 0.809153 | 2.177842e-50 | -8.615850e-47 |
| Msa0559510 | Msa0751260 | 0.842535 | 2.436481e-58 | -8.615850e-47 |
| Msa0559510 | Msa0758250 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
| Msa0559510 | Msa0780280 | 0.822822 | 1.928345e-53 | -8.615850e-47 |
| Msa0559510 | Msa0795070 | 0.838860 | 2.237266e-57 | -8.615850e-47 |
| Msa0559510 | Msa0796630 | 0.807217 | 5.629106e-50 | -8.615850e-47 |
| Msa0559510 | Msa0797770 | 0.812250 | 4.659272e-51 | -8.615850e-47 |
| Msa0559510 | Msa0821800 | 0.817987 | 2.479306e-52 | -8.615850e-47 |
| Msa0559510 | Msa0828240 | 0.819650 | 1.039238e-52 | -8.615850e-47 |
| Msa0559510 | Msa0828660 | 0.801760 | 7.733171e-49 | -8.615850e-47 |
| Msa0559510 | Msa0833520 | 0.809976 | 1.449672e-50 | -8.615850e-47 |
| Msa0559510 | Msa0835230 | 0.802966 | 4.366255e-49 | -8.615850e-47 |
| Msa0559510 | Msa0836650 | 0.802282 | 6.041925e-49 | -8.615850e-47 |
| Msa0559510 | Msa0844110 | 0.809209 | 2.119097e-50 | -8.615850e-47 |
| Msa0559510 | Msa0868160 | 0.817684 | 2.903065e-52 | -8.615850e-47 |
| Msa0559510 | Msa0936390 | 0.845510 | 3.882846e-59 | -8.615850e-47 |
| Msa0559510 | Msa0960530 | 0.808185 | 3.507146e-50 | -8.615850e-47 |
| Msa0559510 | Msa0981040 | 0.804049 | 2.602625e-49 | -8.615850e-47 |
| Msa0559510 | Msa0986510 | 0.819747 | 9.872424e-53 | -8.615850e-47 |
| Msa0559510 | Msa1010070 | 0.803547 | 3.309566e-49 | -8.615850e-47 |
| Msa0559510 | Msa1022820 | 0.810286 | 1.243163e-50 | -8.615850e-47 |
| Msa0559510 | Msa1034500 | 0.802202 | 6.273449e-49 | -8.615850e-47 |
| Msa0559510 | Msa1038080 | 0.809267 | 2.059356e-50 | -8.615850e-47 |
| Msa0559510 | Msa1039710 | -0.825801 | 3.845535e-54 | -8.615850e-47 |
| Msa0559510 | Msa1093480 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0559510 | Msa1096060 | 0.803062 | 4.169273e-49 | -8.615850e-47 |
| Msa0559510 | Msa1121070 | 0.803401 | 3.547816e-49 | -8.615850e-47 |
| Msa0559510 | Msa1131050 | 0.837300 | 5.639925e-57 | -8.615850e-47 |
| Msa0559510 | Msa1144940 | 0.812515 | 4.078959e-51 | -8.615850e-47 |
| Msa0559510 | Msa1147740 | 0.809258 | 2.068338e-50 | -8.615850e-47 |
| Msa0559510 | Msa1195060 | 0.803506 | 3.374942e-49 | -8.615850e-47 |
| Msa0559510 | Msa1215070 | 0.800188 | 1.620240e-48 | -8.615850e-47 |
| Msa0559510 | Msa1262750 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa0559510 | Msa1288450 | 0.801724 | 7.867805e-49 | -8.615850e-47 |
| Msa0559510 | Msa1304890 | -0.813093 | 3.047642e-51 | -8.615850e-47 |
| Msa0559510 | Msa1332000 | 0.803880 | 2.822491e-49 | -8.615850e-47 |
| Msa0559510 | Msa1338400 | 0.831890 | 1.291364e-55 | -8.615850e-47 |
| Msa0559510 | Msa1345810 | 0.803462 | 3.446642e-49 | -8.615850e-47 |
| Msa0559510 | Msa1372150 | 0.808394 | 3.165293e-50 | -8.615850e-47 |
| Msa0559510 | Msa1397740 | 0.800644 | 1.308181e-48 | -8.615850e-47 |
| Msa0559510 | Msa1401270 | 0.807898 | 4.037190e-50 | -8.615850e-47 |
| Msa0559510 | Msa1401460 | 0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0559510 | Msa1408620 | -0.811418 | 7.072232e-51 | -8.615850e-47 |
| Msa0559510 | Msa1420250 | 0.821090 | 4.856097e-53 | -8.615850e-47 |
| Msa0559510 | Msa1422980 | 0.815117 | 1.089451e-51 | -8.615850e-47 |
| Msa0559510 | Msa1424630 | 0.862709 | 4.181725e-64 | -8.615850e-47 |
| Msa0559510 | Msa1425090 | 0.836739 | 7.842608e-57 | -8.615850e-47 |
| Msa0559510 | Msa1426710 | 0.808040 | 3.765235e-50 | -8.615850e-47 |
| Msa0559510 | Msa1430550 | 0.837417 | 5.263566e-57 | -8.615850e-47 |
| Msa0559510 | Msa1446780 | 0.842948 | 1.892592e-58 | -8.615850e-47 |
| Msa0559510 | Msa1453360 | 0.835895 | 1.285362e-56 | -8.615850e-47 |
| Msa0559510 | Msa1458340 | 0.807182 | 5.728457e-50 | -8.615850e-47 |
| Msa0559510 | Msa1459100 | 0.838931 | 2.145197e-57 | -8.615850e-47 |
| Msa0559510 | Msa1463030 | 0.812087 | 5.058641e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559510 | MtrunA17_Chr4g0049491 | 95.872 | 533 | 22 | 0 | 1 | 533 | 1 | 533 | 0.0 | 974 |
| Msa0559510 | MtrunA17_Chr4g0049471 | 81.818 | 539 | 49 | 6 | 1 | 533 | 1 | 496 | 0.0 | 802 |
| Msa0559510 | MtrunA17_Chr2g0325391 | 45.965 | 285 | 126 | 6 | 141 | 425 | 293 | 549 | 3.02e-67 | 230 |
| Msa0559510 | MtrunA17_Chr2g0325411 | 43.537 | 294 | 120 | 8 | 141 | 425 | 304 | 560 | 1.56e-63 | 219 |
| Msa0559510 | MtrunA17_Chr4g0040981 | 44.444 | 288 | 116 | 8 | 145 | 425 | 656 | 906 | 2.17e-63 | 223 |
| Msa0559510 | MtrunA17_Chr3g0116311 | 29.072 | 485 | 221 | 16 | 51 | 487 | 79 | 488 | 4.16e-43 | 164 |
| Msa0559510 | MtrunA17_Chr7g0230041 | 31.124 | 347 | 167 | 10 | 145 | 487 | 183 | 461 | 2.93e-35 | 140 |
| Msa0559510 | MtrunA17_Chr6g0462121 | 26.683 | 401 | 227 | 12 | 74 | 460 | 2 | 349 | 5.72e-28 | 114 |
| Msa0559510 | MtrunA17_Chr2g0285151 | 41.143 | 175 | 90 | 5 | 95 | 266 | 29 | 193 | 4.84e-27 | 114 |
| Msa0559510 | MtrunA17_Chr7g0230031 | 52.381 | 84 | 35 | 1 | 145 | 228 | 198 | 276 | 1.20e-21 | 99.0 |
| Msa0559510 | MtrunA17_Chr8g0369041 | 38.028 | 142 | 78 | 6 | 109 | 245 | 56 | 192 | 4.98e-21 | 94.7 |
| Msa0559510 | MtrunA17_Chr2g0296681 | 43.210 | 81 | 43 | 2 | 167 | 244 | 97 | 177 | 2.66e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0559510 | AT1G73150.2 | 38.035 | 397 | 209 | 10 | 37 | 429 | 23 | 386 | 2.02e-61 | 208 |
| Msa0559510 | AT1G17790.1 | 38.083 | 386 | 184 | 11 | 55 | 420 | 49 | 399 | 1.88e-58 | 202 |
| Msa0559510 | AT1G73150.1 | 34.249 | 473 | 247 | 12 | 37 | 504 | 23 | 436 | 1.43e-53 | 188 |
| Msa0559510 | AT1G06230.2 | 41.912 | 272 | 135 | 6 | 144 | 414 | 421 | 670 | 2.39e-53 | 193 |
| Msa0559510 | AT1G06230.4 | 41.912 | 272 | 135 | 6 | 144 | 414 | 421 | 670 | 2.39e-53 | 193 |
| Msa0559510 | AT1G06230.1 | 41.912 | 272 | 135 | 6 | 144 | 414 | 421 | 670 | 2.39e-53 | 193 |
| Msa0559510 | AT1G06230.3 | 41.912 | 272 | 135 | 6 | 144 | 414 | 421 | 670 | 2.39e-53 | 193 |
| Msa0559510 | AT5G65630.1 | 58.940 | 151 | 54 | 1 | 337 | 487 | 390 | 532 | 1.04e-47 | 175 |
| Msa0559510 | AT5G10550.1 | 54.667 | 150 | 61 | 2 | 337 | 486 | 385 | 527 | 6.95e-42 | 159 |
| Msa0559510 | AT5G14270.2 | 30.524 | 439 | 222 | 13 | 77 | 503 | 64 | 431 | 2.59e-40 | 155 |
| Msa0559510 | AT5G14270.3 | 30.995 | 442 | 216 | 14 | 77 | 503 | 64 | 431 | 2.91e-40 | 155 |
| Msa0559510 | AT5G14270.1 | 30.995 | 442 | 216 | 14 | 77 | 503 | 64 | 431 | 2.91e-40 | 155 |
| Msa0559510 | AT5G63320.3 | 28.855 | 454 | 221 | 15 | 64 | 487 | 60 | 441 | 3.19e-40 | 152 |
| Msa0559510 | AT5G63320.2 | 28.855 | 454 | 221 | 15 | 64 | 487 | 60 | 441 | 3.19e-40 | 152 |
| Msa0559510 | AT5G63320.1 | 29.464 | 448 | 226 | 15 | 64 | 487 | 60 | 441 | 2.41e-38 | 150 |
| Msa0559510 | AT3G01770.2 | 32.565 | 347 | 159 | 11 | 145 | 487 | 130 | 405 | 3.86e-33 | 132 |
| Msa0559510 | AT3G27260.4 | 31.871 | 342 | 152 | 12 | 145 | 482 | 177 | 441 | 6.27e-33 | 134 |
| Msa0559510 | AT3G27260.1 | 31.686 | 344 | 150 | 13 | 145 | 482 | 177 | 441 | 7.63e-33 | 134 |
| Msa0559510 | AT3G27260.3 | 31.686 | 344 | 150 | 13 | 145 | 482 | 177 | 441 | 1.03e-32 | 133 |
| Msa0559510 | AT3G27260.2 | 31.686 | 344 | 150 | 13 | 145 | 482 | 128 | 392 | 1.41e-32 | 133 |
| Msa0559510 | AT3G01770.1 | 31.892 | 370 | 177 | 11 | 145 | 510 | 130 | 428 | 1.94e-32 | 132 |
| Msa0559510 | AT5G46550.1 | 41.481 | 135 | 66 | 2 | 148 | 282 | 73 | 194 | 1.42e-24 | 107 |
| Msa0559510 | AT2G34900.1 | 27.914 | 326 | 178 | 9 | 143 | 460 | 109 | 385 | 5.55e-24 | 104 |
| Msa0559510 | AT3G52280.1 | 27.007 | 274 | 149 | 6 | 143 | 411 | 93 | 320 | 6.74e-24 | 103 |
| Msa0559510 | AT3G52280.2 | 24.289 | 387 | 212 | 11 | 42 | 411 | 15 | 337 | 7.49e-24 | 103 |
| Msa0559510 | AT2G34900.2 | 28.713 | 303 | 164 | 7 | 166 | 460 | 17 | 275 | 1.51e-23 | 100 |
| Msa0559510 | AT1G58025.4 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 5.67e-11 | 65.5 |
| Msa0559510 | AT1G58025.5 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 5.67e-11 | 65.5 |
| Msa0559510 | AT1G58025.3 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 5.67e-11 | 65.5 |
| Msa0559510 | AT1G58025.6 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 5.71e-11 | 65.5 |
| Msa0559510 | AT1G58025.1 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 5.71e-11 | 65.5 |
| Msa0559510 | AT1G58025.2 | 35.135 | 111 | 62 | 3 | 134 | 243 | 209 | 310 | 6.31e-11 | 65.5 |
Find 152 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTTCCCTCTTATT+TGG | 0.124253 | 4_1:-58700832 | None:intergenic |
| CTTTGGCTTGGGCTGCTTCA+AGG | 0.184318 | 4_1:-58700800 | None:intergenic |
| TTCAAAGCCGTTGCATTTAC+AGG | 0.229221 | 4_1:-58700310 | None:intergenic |
| CCTCTGTGTTGCAGCCAATT+TGG | 0.258953 | 4_1:-58699830 | None:intergenic |
| ACCCTCTCCCTTTCCCTCTC+TGG | 0.292850 | 4_1:-58700613 | None:intergenic |
| TTGTTACTAAATTTAGGGTT+AGG | 0.292960 | 4_1:-58699887 | None:intergenic |
| TCCAGTGGCTCCAGCAGTTC+TGG | 0.296431 | 4_1:+58701404 | Msa0559510:CDS |
| TCAGGGAGCAAGAAGGTTTC+CGG | 0.305508 | 4_1:+58700142 | Msa0559510:CDS |
| GAGTCTTAAGCTGACGAATT+TGG | 0.320746 | 4_1:-58700057 | None:intergenic |
| GGATCCCTGGCCTTTGGCTT+GGG | 0.322222 | 4_1:-58700811 | None:intergenic |
| TTCCCTCTTATTTGGATCCC+TGG | 0.326630 | 4_1:-58700824 | None:intergenic |
| TGGATCCCTGGCCTTTGGCT+TGG | 0.328127 | 4_1:-58700812 | None:intergenic |
| TTTGGCTTGGGCTGCTTCAA+GGG | 0.331789 | 4_1:-58700799 | None:intergenic |
| GCATCAACCTTCTCCCTATC+AGG | 0.335506 | 4_1:-58701227 | None:intergenic |
| TCACTTGAAGTGCTCGCGTT+GGG | 0.336663 | 4_1:-58700774 | None:intergenic |
| TCGGATTCAGGGAGTTCTTC+AGG | 0.341320 | 4_1:+58701533 | Msa0559510:CDS |
| TTATTTGGATCCCTGGCCTT+TGG | 0.344705 | 4_1:-58700817 | None:intergenic |
| ACCCCATTGCCTTTGTTTGA+AGG | 0.345351 | 4_1:-58701093 | None:intergenic |
| CGGCGTAGAGTAAGCATTCT+TGG | 0.350895 | 4_1:-58700398 | None:intergenic |
| ACCACCGTTGTGGTTTAGCC+TGG | 0.356873 | 4_1:-58700104 | None:intergenic |
| GATTGAGAAAGATAAAGATA+TGG | 0.363334 | 4_1:+58701352 | Msa0559510:CDS |
| CCAACGGTAACGAACCAAAT+TGG | 0.367917 | 4_1:+58699816 | Msa0559510:CDS |
| CGAACTGGTGACTGAGCTAA+TGG | 0.371584 | 4_1:-58700742 | None:intergenic |
| ACTGGTGGAGGGATTGGAAT+TGG | 0.375860 | 4_1:-58700652 | None:intergenic |
| AAGAAATCAAAGTCAGAGAT+TGG | 0.382024 | 4_1:+58700199 | Msa0559510:CDS |
| GATTAAGCGGCAGGCACTAA+TGG | 0.383204 | 4_1:+58701056 | Msa0559510:CDS |
| AATTAAGCATCCTATGGATC+TGG | 0.384774 | 4_1:+58700354 | Msa0559510:CDS |
| CAGGCTCAGGCAGTGGCTCT+TGG | 0.385121 | 4_1:-58700684 | None:intergenic |
| TCATCAAATTTCTCGTGTAT+TGG | 0.386676 | 4_1:-58700541 | None:intergenic |
| CTGTTGACACAGAGACTCTC+TGG | 0.394963 | 4_1:+58700989 | Msa0559510:CDS |
| CTTGCTCCCTGATTTCTTAG+TGG | 0.395685 | 4_1:-58700131 | None:intergenic |
| ACAGGTGGGAAGTTGTTTGC+TGG | 0.397542 | 4_1:-58701326 | None:intergenic |
| TTGCTCCCTGATTTCTTAGT+GGG | 0.400065 | 4_1:-58700130 | None:intergenic |
| GGTGGTCCCACTAAGAAATC+AGG | 0.406385 | 4_1:+58700124 | Msa0559510:CDS |
| CTTAAGACTCGAATTGAATC+AGG | 0.417831 | 4_1:+58700070 | Msa0559510:CDS |
| TGCCTTCAAACAAAGGCAAT+GGG | 0.422340 | 4_1:+58701091 | Msa0559510:CDS |
| TTTGCTACTGGTGGAGGGAT+TGG | 0.424910 | 4_1:-58700658 | None:intergenic |
| AGGAAAAGGTCGTTTGTTGC+CGG | 0.425299 | 4_1:-58700161 | None:intergenic |
| TTCTGCTTCTTCCCCTCAGA+AGG | 0.428847 | 4_1:-58701257 | None:intergenic |
| TTGATCGATTGGTTACCAAT+TGG | 0.429518 | 4_1:+58701016 | Msa0559510:CDS |
| CTAAATTTAGGGTTAGGGTT+AGG | 0.433996 | 4_1:-58699881 | None:intergenic |
| AGAAATCAAAGTCAGAGATT+GGG | 0.434900 | 4_1:+58700200 | Msa0559510:CDS |
| GGATGAGATTGAGCTTGATA+TGG | 0.436408 | 4_1:+58700963 | Msa0559510:CDS |
| ATTTATAGGAATTGCCTGAT+AGG | 0.436557 | 4_1:+58701213 | Msa0559510:intron |
| TTCACTTGAAGTGCTCGCGT+TGG | 0.441063 | 4_1:-58700775 | None:intergenic |
| TGTTACTAAATTTAGGGTTA+GGG | 0.446081 | 4_1:-58699886 | None:intergenic |
| AGGCGGTGGAGCTGAATTCA+TGG | 0.450284 | 4_1:+58699850 | Msa0559510:CDS |
| TGATGTAATTAAGCATCCTA+TGG | 0.459357 | 4_1:+58700348 | Msa0559510:CDS |
| ATGGGCATCTGGAGCAAGAT+GGG | 0.463782 | 4_1:+58700941 | Msa0559510:CDS |
| AAGGAAGAGAAATGGGCATC+TGG | 0.467249 | 4_1:+58700930 | Msa0559510:CDS |
| AATTCCCTCACCGCAGGAAA+AGG | 0.468461 | 4_1:-58700175 | None:intergenic |
| AACAGGTAGTGCAGATCATA+AGG | 0.470734 | 4_1:+58700911 | Msa0559510:CDS |
| GATAAAGATATGGGTGCTAC+TGG | 0.470996 | 4_1:+58701362 | Msa0559510:CDS |
| GTTGGGGAGGGTATGCGAAC+TGG | 0.475235 | 4_1:-58700757 | None:intergenic |
| AGCAGCCCAAGCCAAAGGCC+AGG | 0.478818 | 4_1:+58700806 | Msa0559510:CDS |
| ACTACCTGTTCCATCTTCTC+TGG | 0.479486 | 4_1:-58700898 | None:intergenic |
| ACCAGAACTGCTGGAGCCAC+TGG | 0.480494 | 4_1:-58701405 | None:intergenic |
| GTGTTAACATCATGGCCCTT+GGG | 0.480899 | 4_1:-58700475 | None:intergenic |
| AGGCCAGGGATCCAAATAAG+AGG | 0.482051 | 4_1:+58700821 | Msa0559510:CDS |
| GGGGATTCGAAGTGCTTGGC+TGG | 0.485173 | 4_1:-58700720 | None:intergenic |
| TTATCTTTCTCAATCTCCAC+AGG | 0.486073 | 4_1:-58701344 | None:intergenic |
| CCAATTTGGTTCGTTACCGT+TGG | 0.486429 | 4_1:-58699816 | None:intergenic |
| AGAGATTGGGGATGCGATGA+AGG | 0.491863 | 4_1:+58700213 | Msa0559510:CDS |
| CAGATCATAAGGAAGAGAAA+TGG | 0.492121 | 4_1:+58700922 | Msa0559510:CDS |
| GTACTAGCAGGCTCAGGCAG+TGG | 0.495175 | 4_1:-58700691 | None:intergenic |
| GCCACCAGAGAAGATGGAAC+AGG | 0.495605 | 4_1:+58700894 | Msa0559510:CDS |
| AGATCATAAGGAAGAGAAAT+GGG | 0.498119 | 4_1:+58700923 | Msa0559510:CDS |
| GCAGCCCAAGCCAAAGGCCA+GGG | 0.500330 | 4_1:+58700807 | Msa0559510:CDS |
| ATTGAGAAAGATAAAGATAT+GGG | 0.501674 | 4_1:+58701353 | Msa0559510:CDS |
| AGTGTTAACATCATGGCCCT+TGG | 0.504161 | 4_1:-58700476 | None:intergenic |
| TTGAAGTGCTCGCGTTGGGG+AGG | 0.506828 | 4_1:-58700770 | None:intergenic |
| GTTGGATCGTCGATTGATTG+AGG | 0.506931 | 4_1:-58699942 | None:intergenic |
| TTTATAGGAATTGCCTGATA+GGG | 0.508579 | 4_1:+58701214 | Msa0559510:intron |
| TTTCCCTCTCTGGTTCAACA+TGG | 0.510397 | 4_1:-58700603 | None:intergenic |
| ATGTTGAACCAGAGAGGGAA+AGG | 0.513945 | 4_1:+58700605 | Msa0559510:CDS |
| AACCAGAGAGGGAAAGGGAG+AGG | 0.515203 | 4_1:+58700611 | Msa0559510:CDS |
| TTCTTCAATTCCCTCACCGC+AGG | 0.519424 | 4_1:-58700181 | None:intergenic |
| CACTTGAAGTGCTCGCGTTG+GGG | 0.524004 | 4_1:-58700773 | None:intergenic |
| ATTGAGGAAGCGTCATCTGA+TGG | 0.524535 | 4_1:-58699926 | None:intergenic |
| TGGCTGCAACACAGAGGCGG+TGG | 0.525481 | 4_1:+58699836 | Msa0559510:CDS |
| GTGCCTTCAAACAAAGGCAA+TGG | 0.528594 | 4_1:+58701090 | Msa0559510:CDS |
| GGAATCACTACCAGAACTGC+TGG | 0.529979 | 4_1:-58701414 | None:intergenic |
| CCACCGTTGTGGTTTAGCCT+GGG | 0.530502 | 4_1:-58700103 | None:intergenic |
| ATTAAGCATCCTATGGATCT+GGG | 0.531978 | 4_1:+58700355 | Msa0559510:CDS |
| TTGACAGTGCCCAGATCCAT+AGG | 0.532128 | 4_1:-58700364 | None:intergenic |
| GGTGAGCAAGATTAAGCGGC+AGG | 0.533496 | 4_1:+58701047 | Msa0559510:CDS |
| TCTCTGGGAACTTGATCGAT+TGG | 0.533778 | 4_1:+58701005 | Msa0559510:CDS |
| AATGGGCATCTGGAGCAAGA+TGG | 0.534346 | 4_1:+58700940 | Msa0559510:CDS |
| GGAGCCACTGGAACTACTAC+TGG | 0.536891 | 4_1:-58701393 | None:intergenic |
| TTGAGGAAGCGTCATCTGAT+GGG | 0.538515 | 4_1:-58699925 | None:intergenic |
| CTTCTTCCCCTCAGAAGGAG+TGG | 0.539983 | 4_1:-58701252 | None:intergenic |
| GAACTGGTGACTGAGCTAAT+GGG | 0.540318 | 4_1:-58700741 | None:intergenic |
| TGAAGTGCTCGCGTTGGGGA+GGG | 0.542081 | 4_1:-58700769 | None:intergenic |
| TTAGAAGTACTAGCAGGCTC+AGG | 0.542104 | 4_1:-58700697 | None:intergenic |
| GTATTGTGAATGATTATCGT+TGG | 0.542418 | 4_1:-58699960 | None:intergenic |
| TCTTTCTCAATCTCCACAGG+TGG | 0.544866 | 4_1:-58701341 | None:intergenic |
| TCAGGAAGTGACTCTGAAGC+GGG | 0.549573 | 4_1:+58701551 | Msa0559510:CDS |
| GAAATCAAAGTCAGAGATTG+GGG | 0.550032 | 4_1:+58700201 | Msa0559510:CDS |
| ACCTGTTCCATCTTCTCTGG+TGG | 0.552351 | 4_1:-58700895 | None:intergenic |
| TGATGCAACCACTCCTTCTG+AGG | 0.556352 | 4_1:+58701244 | Msa0559510:CDS |
| AATAATGTGCCTTCAAACAA+AGG | 0.557916 | 4_1:+58701084 | Msa0559510:CDS |
| AGTGACTCTGAAGCGGGCAA+TGG | 0.561285 | 4_1:+58701557 | Msa0559510:CDS |
| GGCTGGTTAGAAGTACTAGC+AGG | 0.564980 | 4_1:-58700703 | None:intergenic |
| TGTTGAACCAGAGAGGGAAA+GGG | 0.566133 | 4_1:+58700606 | Msa0559510:CDS |
| GGCGGTGGAGCTGAATTCAT+GGG | 0.566531 | 4_1:+58699851 | Msa0559510:CDS |
| CTTGAAGCAGCCCAAGCCAA+AGG | 0.568683 | 4_1:+58700801 | Msa0559510:CDS |
| ACCAGAGAGGGAAAGGGAGA+GGG | 0.569026 | 4_1:+58700612 | Msa0559510:CDS |
| TTCAGGAAGTGACTCTGAAG+CGG | 0.578365 | 4_1:+58701550 | Msa0559510:CDS |
| TCGCCGCAGTGTTAACATCA+TGG | 0.579958 | 4_1:-58700483 | None:intergenic |
| ATGAATTACAGGCTAGCTCG+TGG | 0.582142 | 4_1:+58700578 | Msa0559510:CDS |
| CATCGAATCGTACACAAAGA+CGG | 0.584140 | 4_1:+58699994 | Msa0559510:CDS |
| TAGTGGGACCACCACCGTTG+TGG | 0.584586 | 4_1:-58700114 | None:intergenic |
| AACTGGTGACTGAGCTAATG+GGG | 0.588096 | 4_1:-58700740 | None:intergenic |
| TGCATTGACATACAATCCCA+AGG | 0.588241 | 4_1:+58700459 | Msa0559510:CDS |
| AGCAAACAACTTCCCACCTG+TGG | 0.593833 | 4_1:+58701328 | Msa0559510:CDS |
| AGGCTAAACCACAACGGTGG+TGG | 0.594359 | 4_1:+58700106 | Msa0559510:CDS |
| GATGCAACCACTCCTTCTGA+GGG | 0.597989 | 4_1:+58701245 | Msa0559510:CDS |
| GATATGGGTGCTACTGGTGG+CGG | 0.601785 | 4_1:+58701368 | Msa0559510:CDS |
| TAACACTCCTGTAAATGCAA+CGG | 0.607221 | 4_1:+58700303 | Msa0559510:CDS |
| GGCCAGGGATCCAAATAAGA+GGG | 0.609397 | 4_1:+58700822 | Msa0559510:CDS |
| GGTAGTGATTCCTCGTCTAG+TGG | 0.609600 | 4_1:+58701425 | Msa0559510:CDS |
| GAACCATGTTGAACCAGAGA+GGG | 0.610145 | 4_1:+58700600 | Msa0559510:CDS |
| CTTTCTCAATCTCCACAGGT+GGG | 0.611329 | 4_1:-58701340 | None:intergenic |
| GTGGTCCCACTAAGAAATCA+GGG | 0.612863 | 4_1:+58700125 | Msa0559510:CDS |
| GGAATTGCCTGATAGGGAGA+AGG | 0.614564 | 4_1:+58701220 | Msa0559510:intron |
| TAAGAGGGAAATGAATGTTG+AGG | 0.616464 | 4_1:+58700837 | Msa0559510:CDS |
| TGTTGACACAGAGACTCTCT+GGG | 0.622924 | 4_1:+58700990 | Msa0559510:CDS |
| TGAGGAAGCGTCATCTGATG+GGG | 0.626247 | 4_1:-58699924 | None:intergenic |
| AGATGGTGAGCAAGATTAAG+CGG | 0.630774 | 4_1:+58701043 | Msa0559510:CDS |
| TAAGAAATCAGGGAGCAAGA+AGG | 0.642181 | 4_1:+58700135 | Msa0559510:CDS |
| AAAGATATGGGTGCTACTGG+TGG | 0.649739 | 4_1:+58701365 | Msa0559510:CDS |
| TGGGCATCTGGAGCAAGATG+GGG | 0.652037 | 4_1:+58700942 | Msa0559510:CDS |
| GAATGCTTACTCTACGCCGT+CGG | 0.658777 | 4_1:+58700402 | Msa0559510:CDS |
| TGAGATTGAGCTTGATATGG+AGG | 0.664012 | 4_1:+58700966 | Msa0559510:CDS |
| GCATCGGCGTTATTAGCCAA+CGG | 0.665865 | 4_1:+58699800 | Msa0559510:CDS |
| GGAACCATGTTGAACCAGAG+AGG | 0.667661 | 4_1:+58700599 | Msa0559510:CDS |
| GGGGATGCGATGAAGGCTTG+TGG | 0.668675 | 4_1:+58700220 | Msa0559510:CDS |
| GAAGATAGATACTGTTGACG+AGG | 0.670346 | 4_1:+58701280 | Msa0559510:CDS |
| GGTGCCAGTAGTAGTTCCAG+TGG | 0.670411 | 4_1:+58701389 | Msa0559510:CDS |
| GCATTGACATACAATCCCAA+GGG | 0.679665 | 4_1:+58700460 | Msa0559510:CDS |
| ACATCAGCAGCAAAATCCGA+CGG | 0.681412 | 4_1:-58700418 | None:intergenic |
| AATTGGCTGCAACACAGAGG+CGG | 0.689298 | 4_1:+58699833 | Msa0559510:CDS |
| AATCAGGTGAGTTTAAACCC+AGG | 0.697049 | 4_1:+58700086 | Msa0559510:CDS |
| GCCTTCAAACAAAGGCAATG+GGG | 0.698333 | 4_1:+58701092 | Msa0559510:CDS |
| ACTGGTGACTGAGCTAATGG+GGG | 0.699815 | 4_1:-58700739 | None:intergenic |
| AGAGGTTATACCACTAGACG+AGG | 0.704995 | 4_1:-58701435 | None:intergenic |
| ATGCAACCACTCCTTCTGAG+GGG | 0.725206 | 4_1:+58701246 | Msa0559510:CDS |
| CCCAGGCTAAACCACAACGG+TGG | 0.730798 | 4_1:+58700103 | Msa0559510:CDS |
| CCAAATTGGCTGCAACACAG+AGG | 0.734243 | 4_1:+58699830 | Msa0559510:CDS |
| GTTGACGAGGATGTTGACAT+CGG | 0.736538 | 4_1:+58701293 | Msa0559510:CDS |
| AAACCCAGGCTAAACCACAA+CGG | 0.749218 | 4_1:+58700100 | Msa0559510:CDS |
| GGGCCATGATGTTAACACTG+CGG | 0.770423 | 4_1:+58700480 | Msa0559510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTTGTTACTAAATTTA+GGG | - | chr4_1:58699895-58699914 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTACTAAATTTA+GGG | - | chr4_1:58699895-58699914 | None:intergenic | 15.0% |
| !!! | CTCTTTTTGTTACTAAATTT+AGG | - | chr4_1:58699896-58699915 | None:intergenic | 20.0% |
| !! | ATTGAGAAAGATAAAGATAT+GGG | + | chr4_1:58701353-58701372 | Msa0559510:CDS | 20.0% |
| !!! | TTTGTATTCTGAAATTATCA+TGG | + | chr4_1:58701478-58701497 | Msa0559510:intron | 20.0% |
| !!! | TTGTATTCTGAAATTATCAT+GGG | + | chr4_1:58701479-58701498 | Msa0559510:intron | 20.0% |
| !!! | CTCTTTTTGTTACTAAATTT+AGG | - | chr4_1:58699896-58699915 | None:intergenic | 20.0% |
| !! | ATTGAGAAAGATAAAGATAT+GGG | + | chr4_1:58701353-58701372 | Msa0559510:CDS | 20.0% |
| !!! | TTTGTATTCTGAAATTATCA+TGG | + | chr4_1:58701478-58701497 | Msa0559510:intron | 20.0% |
| !!! | TTGTATTCTGAAATTATCAT+GGG | + | chr4_1:58701479-58701498 | Msa0559510:intron | 20.0% |
| !! | TGTTACTAAATTTAGGGTTA+GGG | - | chr4_1:58699889-58699908 | None:intergenic | 25.0% |
| !! | TTGTTACTAAATTTAGGGTT+AGG | - | chr4_1:58699890-58699909 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATGATGAATTAC+AGG | + | chr4_1:58700567-58700586 | Msa0559510:CDS | 25.0% |
| ! | CAGAATAAAAATGGACAATA+AGG | - | chr4_1:58701124-58701143 | None:intergenic | 25.0% |
| ! | ATCACTCAACAGAATAAAAA+TGG | - | chr4_1:58701133-58701152 | None:intergenic | 25.0% |
| !! | ATTTTCTTGTGTGCATTTAT+AGG | + | chr4_1:58701199-58701218 | Msa0559510:intron | 25.0% |
| ! | GATTGAGAAAGATAAAGATA+TGG | + | chr4_1:58701352-58701371 | Msa0559510:CDS | 25.0% |
| !! | TGTTACTAAATTTAGGGTTA+GGG | - | chr4_1:58699889-58699908 | None:intergenic | 25.0% |
| !! | TTGTTACTAAATTTAGGGTT+AGG | - | chr4_1:58699890-58699909 | None:intergenic | 25.0% |
| !!! | AAGTTTTGATGATGAATTAC+AGG | + | chr4_1:58700567-58700586 | Msa0559510:CDS | 25.0% |
| ! | CAGAATAAAAATGGACAATA+AGG | - | chr4_1:58701124-58701143 | None:intergenic | 25.0% |
| ! | ATCACTCAACAGAATAAAAA+TGG | - | chr4_1:58701133-58701152 | None:intergenic | 25.0% |
| !! | ATTTTCTTGTGTGCATTTAT+AGG | + | chr4_1:58701199-58701218 | Msa0559510:intron | 25.0% |
| ! | GATTGAGAAAGATAAAGATA+TGG | + | chr4_1:58701352-58701371 | Msa0559510:CDS | 25.0% |
| GTATTGTGAATGATTATCGT+TGG | - | chr4_1:58699963-58699982 | None:intergenic | 30.0% | |
| AAGAAATCAAAGTCAGAGAT+TGG | + | chr4_1:58700199-58700218 | Msa0559510:CDS | 30.0% | |
| AGAAATCAAAGTCAGAGATT+GGG | + | chr4_1:58700200-58700219 | Msa0559510:CDS | 30.0% | |
| AAGCTCATGAAAAACAAAAG+TGG | + | chr4_1:58700256-58700275 | Msa0559510:CDS | 30.0% | |
| TCATGAAAAACAAAAGTGGT+TGG | + | chr4_1:58700260-58700279 | Msa0559510:CDS | 30.0% | |
| TGATGTAATTAAGCATCCTA+TGG | + | chr4_1:58700348-58700367 | Msa0559510:CDS | 30.0% | |
| TCATCAAATTTCTCGTGTAT+TGG | - | chr4_1:58700544-58700563 | None:intergenic | 30.0% | |
| ACATTCATTTCCCTCTTATT+TGG | - | chr4_1:58700835-58700854 | None:intergenic | 30.0% | |
| TGTTGAGGAAAAACATAAGT+TGG | + | chr4_1:58700852-58700871 | Msa0559510:CDS | 30.0% | |
| GTTGAGGAAAAACATAAGTT+GGG | + | chr4_1:58700853-58700872 | Msa0559510:CDS | 30.0% | |
| ! | AAAAACATAAGTTGGGACTA+GGG | + | chr4_1:58700860-58700879 | Msa0559510:CDS | 30.0% |
| AGATCATAAGGAAGAGAAAT+GGG | + | chr4_1:58700923-58700942 | Msa0559510:CDS | 30.0% | |
| AATAATGTGCCTTCAAACAA+AGG | + | chr4_1:58701084-58701103 | Msa0559510:CDS | 30.0% | |
| ATTTATAGGAATTGCCTGAT+AGG | + | chr4_1:58701213-58701232 | Msa0559510:intron | 30.0% | |
| TTTATAGGAATTGCCTGATA+GGG | + | chr4_1:58701214-58701233 | Msa0559510:intron | 30.0% | |
| ATAAAACATTCAGTGGAAAG+AGG | - | chr4_1:58701456-58701475 | None:intergenic | 30.0% | |
| ! | TCTTTCCACTGAATGTTTTA+TGG | + | chr4_1:58701455-58701474 | Msa0559510:intron | 30.0% |
| ACAAACCATAAAACATTCAG+TGG | - | chr4_1:58701463-58701482 | None:intergenic | 30.0% | |
| ! | TTTCGATACTTTTGCAGATT+CGG | + | chr4_1:58701514-58701533 | Msa0559510:intron | 30.0% |
| GTATTGTGAATGATTATCGT+TGG | - | chr4_1:58699963-58699982 | None:intergenic | 30.0% | |
| AAGAAATCAAAGTCAGAGAT+TGG | + | chr4_1:58700199-58700218 | Msa0559510:CDS | 30.0% | |
| AGAAATCAAAGTCAGAGATT+GGG | + | chr4_1:58700200-58700219 | Msa0559510:CDS | 30.0% | |
| AAGCTCATGAAAAACAAAAG+TGG | + | chr4_1:58700256-58700275 | Msa0559510:CDS | 30.0% | |
| TCATGAAAAACAAAAGTGGT+TGG | + | chr4_1:58700260-58700279 | Msa0559510:CDS | 30.0% | |
| TGATGTAATTAAGCATCCTA+TGG | + | chr4_1:58700348-58700367 | Msa0559510:CDS | 30.0% | |
| TCATCAAATTTCTCGTGTAT+TGG | - | chr4_1:58700544-58700563 | None:intergenic | 30.0% | |
| ACATTCATTTCCCTCTTATT+TGG | - | chr4_1:58700835-58700854 | None:intergenic | 30.0% | |
| TGTTGAGGAAAAACATAAGT+TGG | + | chr4_1:58700852-58700871 | Msa0559510:CDS | 30.0% | |
| GTTGAGGAAAAACATAAGTT+GGG | + | chr4_1:58700853-58700872 | Msa0559510:CDS | 30.0% | |
| ! | AAAAACATAAGTTGGGACTA+GGG | + | chr4_1:58700860-58700879 | Msa0559510:CDS | 30.0% |
| AGATCATAAGGAAGAGAAAT+GGG | + | chr4_1:58700923-58700942 | Msa0559510:CDS | 30.0% | |
| AATAATGTGCCTTCAAACAA+AGG | + | chr4_1:58701084-58701103 | Msa0559510:CDS | 30.0% | |
| ATTTATAGGAATTGCCTGAT+AGG | + | chr4_1:58701213-58701232 | Msa0559510:intron | 30.0% | |
| TTTATAGGAATTGCCTGATA+GGG | + | chr4_1:58701214-58701233 | Msa0559510:intron | 30.0% | |
| ATAAAACATTCAGTGGAAAG+AGG | - | chr4_1:58701456-58701475 | None:intergenic | 30.0% | |
| ! | TCTTTCCACTGAATGTTTTA+TGG | + | chr4_1:58701455-58701474 | Msa0559510:intron | 30.0% |
| ACAAACCATAAAACATTCAG+TGG | - | chr4_1:58701463-58701482 | None:intergenic | 30.0% | |
| ! | TTTCGATACTTTTGCAGATT+CGG | + | chr4_1:58701514-58701533 | Msa0559510:intron | 30.0% |
| ! | CTAAATTTAGGGTTAGGGTT+AGG | - | chr4_1:58699884-58699903 | None:intergenic | 35.0% |
| CTTAAGACTCGAATTGAATC+AGG | + | chr4_1:58700070-58700089 | Msa0559510:CDS | 35.0% | |
| GAAATCAAAGTCAGAGATTG+GGG | + | chr4_1:58700201-58700220 | Msa0559510:CDS | 35.0% | |
| ! | GTGGTTGGATTTTTAACACT+TGG | + | chr4_1:58700275-58700294 | Msa0559510:CDS | 35.0% |
| TAACACTCCTGTAAATGCAA+CGG | + | chr4_1:58700303-58700322 | Msa0559510:CDS | 35.0% | |
| AATTAAGCATCCTATGGATC+TGG | + | chr4_1:58700354-58700373 | Msa0559510:CDS | 35.0% | |
| ATTAAGCATCCTATGGATCT+GGG | + | chr4_1:58700355-58700374 | Msa0559510:CDS | 35.0% | |
| TAAGAGGGAAATGAATGTTG+AGG | + | chr4_1:58700837-58700856 | Msa0559510:CDS | 35.0% | |
| ! | GAAAAACATAAGTTGGGACT+AGG | + | chr4_1:58700859-58700878 | Msa0559510:CDS | 35.0% |
| CAGATCATAAGGAAGAGAAA+TGG | + | chr4_1:58700922-58700941 | Msa0559510:CDS | 35.0% | |
| ! | TTGATCGATTGGTTACCAAT+TGG | + | chr4_1:58701016-58701035 | Msa0559510:CDS | 35.0% |
| GGTTACCAATTGGAAAAAGA+TGG | + | chr4_1:58701026-58701045 | Msa0559510:CDS | 35.0% | |
| TTATCTTTCTCAATCTCCAC+AGG | - | chr4_1:58701347-58701366 | None:intergenic | 35.0% | |
| !! | CTGCAAAAGTATCGAAATTG+AGG | - | chr4_1:58701511-58701530 | None:intergenic | 35.0% |
| ! | CTAAATTTAGGGTTAGGGTT+AGG | - | chr4_1:58699884-58699903 | None:intergenic | 35.0% |
| CTTAAGACTCGAATTGAATC+AGG | + | chr4_1:58700070-58700089 | Msa0559510:CDS | 35.0% | |
| GAAATCAAAGTCAGAGATTG+GGG | + | chr4_1:58700201-58700220 | Msa0559510:CDS | 35.0% | |
| ! | GTGGTTGGATTTTTAACACT+TGG | + | chr4_1:58700275-58700294 | Msa0559510:CDS | 35.0% |
| TAACACTCCTGTAAATGCAA+CGG | + | chr4_1:58700303-58700322 | Msa0559510:CDS | 35.0% | |
| AATTAAGCATCCTATGGATC+TGG | + | chr4_1:58700354-58700373 | Msa0559510:CDS | 35.0% | |
| ATTAAGCATCCTATGGATCT+GGG | + | chr4_1:58700355-58700374 | Msa0559510:CDS | 35.0% | |
| TAAGAGGGAAATGAATGTTG+AGG | + | chr4_1:58700837-58700856 | Msa0559510:CDS | 35.0% | |
| ! | GAAAAACATAAGTTGGGACT+AGG | + | chr4_1:58700859-58700878 | Msa0559510:CDS | 35.0% |
| CAGATCATAAGGAAGAGAAA+TGG | + | chr4_1:58700922-58700941 | Msa0559510:CDS | 35.0% | |
| ! | TTGATCGATTGGTTACCAAT+TGG | + | chr4_1:58701016-58701035 | Msa0559510:CDS | 35.0% |
| GGTTACCAATTGGAAAAAGA+TGG | + | chr4_1:58701026-58701045 | Msa0559510:CDS | 35.0% | |
| TTATCTTTCTCAATCTCCAC+AGG | - | chr4_1:58701347-58701366 | None:intergenic | 35.0% | |
| !! | CTGCAAAAGTATCGAAATTG+AGG | - | chr4_1:58701511-58701530 | None:intergenic | 35.0% |
| CATCGAATCGTACACAAAGA+CGG | + | chr4_1:58699994-58700013 | Msa0559510:CDS | 40.0% | |
| GAGTCTTAAGCTGACGAATT+TGG | - | chr4_1:58700060-58700079 | None:intergenic | 40.0% | |
| AATCAGGTGAGTTTAAACCC+AGG | + | chr4_1:58700086-58700105 | Msa0559510:CDS | 40.0% | |
| TTGCTCCCTGATTTCTTAGT+GGG | - | chr4_1:58700133-58700152 | None:intergenic | 40.0% | |
| TAAGAAATCAGGGAGCAAGA+AGG | + | chr4_1:58700135-58700154 | Msa0559510:CDS | 40.0% | |
| TTCAAAGCCGTTGCATTTAC+AGG | - | chr4_1:58700313-58700332 | None:intergenic | 40.0% | |
| ! | TGCATTGACATACAATCCCA+AGG | + | chr4_1:58700459-58700478 | Msa0559510:CDS | 40.0% |
| ! | GCATTGACATACAATCCCAA+GGG | + | chr4_1:58700460-58700479 | Msa0559510:CDS | 40.0% |
| GCAGCTTCTTGAAAAATTCG+AGG | + | chr4_1:58700507-58700526 | Msa0559510:CDS | 40.0% | |
| AACAGGTAGTGCAGATCATA+AGG | + | chr4_1:58700911-58700930 | Msa0559510:CDS | 40.0% | |
| GGATGAGATTGAGCTTGATA+TGG | + | chr4_1:58700963-58700982 | Msa0559510:CDS | 40.0% | |
| TGAGATTGAGCTTGATATGG+AGG | + | chr4_1:58700966-58700985 | Msa0559510:CDS | 40.0% | |
| ! | GCTCACCATCTTTTTCCAAT+TGG | - | chr4_1:58701034-58701053 | None:intergenic | 40.0% |
| AGATGGTGAGCAAGATTAAG+CGG | + | chr4_1:58701043-58701062 | Msa0559510:CDS | 40.0% | |
| TGCCTTCAAACAAAGGCAAT+GGG | + | chr4_1:58701091-58701110 | Msa0559510:CDS | 40.0% | |
| GCTGTCTAATGTAGCATTGT+TGG | + | chr4_1:58701156-58701175 | Msa0559510:intron | 40.0% | |
| GAAGATAGATACTGTTGACG+AGG | + | chr4_1:58701280-58701299 | Msa0559510:CDS | 40.0% | |
| ! | GATAAAGATATGGGTGCTAC+TGG | + | chr4_1:58701362-58701381 | Msa0559510:CDS | 40.0% |
| ! | ACTTTTGCAGATTCGGATTC+AGG | + | chr4_1:58701521-58701540 | Msa0559510:intron | 40.0% |
| ! | CTTTTGCAGATTCGGATTCA+GGG | + | chr4_1:58701522-58701541 | Msa0559510:intron | 40.0% |
| CATCGAATCGTACACAAAGA+CGG | + | chr4_1:58699994-58700013 | Msa0559510:CDS | 40.0% | |
| GAGTCTTAAGCTGACGAATT+TGG | - | chr4_1:58700060-58700079 | None:intergenic | 40.0% | |
| AATCAGGTGAGTTTAAACCC+AGG | + | chr4_1:58700086-58700105 | Msa0559510:CDS | 40.0% | |
| TTGCTCCCTGATTTCTTAGT+GGG | - | chr4_1:58700133-58700152 | None:intergenic | 40.0% | |
| TAAGAAATCAGGGAGCAAGA+AGG | + | chr4_1:58700135-58700154 | Msa0559510:CDS | 40.0% | |
| TTCAAAGCCGTTGCATTTAC+AGG | - | chr4_1:58700313-58700332 | None:intergenic | 40.0% | |
| ! | TGCATTGACATACAATCCCA+AGG | + | chr4_1:58700459-58700478 | Msa0559510:CDS | 40.0% |
| ! | GCATTGACATACAATCCCAA+GGG | + | chr4_1:58700460-58700479 | Msa0559510:CDS | 40.0% |
| GCAGCTTCTTGAAAAATTCG+AGG | + | chr4_1:58700507-58700526 | Msa0559510:CDS | 40.0% | |
| AACAGGTAGTGCAGATCATA+AGG | + | chr4_1:58700911-58700930 | Msa0559510:CDS | 40.0% | |
| GGATGAGATTGAGCTTGATA+TGG | + | chr4_1:58700963-58700982 | Msa0559510:CDS | 40.0% | |
| TGAGATTGAGCTTGATATGG+AGG | + | chr4_1:58700966-58700985 | Msa0559510:CDS | 40.0% | |
| ! | GCTCACCATCTTTTTCCAAT+TGG | - | chr4_1:58701034-58701053 | None:intergenic | 40.0% |
| AGATGGTGAGCAAGATTAAG+CGG | + | chr4_1:58701043-58701062 | Msa0559510:CDS | 40.0% | |
| TGCCTTCAAACAAAGGCAAT+GGG | + | chr4_1:58701091-58701110 | Msa0559510:CDS | 40.0% | |
| GCTGTCTAATGTAGCATTGT+TGG | + | chr4_1:58701156-58701175 | Msa0559510:intron | 40.0% | |
| GAAGATAGATACTGTTGACG+AGG | + | chr4_1:58701280-58701299 | Msa0559510:CDS | 40.0% | |
| ! | GATAAAGATATGGGTGCTAC+TGG | + | chr4_1:58701362-58701381 | Msa0559510:CDS | 40.0% |
| ! | ACTTTTGCAGATTCGGATTC+AGG | + | chr4_1:58701521-58701540 | Msa0559510:intron | 40.0% |
| ! | CTTTTGCAGATTCGGATTCA+GGG | + | chr4_1:58701522-58701541 | Msa0559510:intron | 40.0% |
| ! | CCAATTTGGTTCGTTACCGT+TGG | - | chr4_1:58699819-58699838 | None:intergenic | 45.0% |
| CCAACGGTAACGAACCAAAT+TGG | + | chr4_1:58699816-58699835 | Msa0559510:CDS | 45.0% | |
| !! | TTGAGGAAGCGTCATCTGAT+GGG | - | chr4_1:58699928-58699947 | None:intergenic | 45.0% |
| !! | ATTGAGGAAGCGTCATCTGA+TGG | - | chr4_1:58699929-58699948 | None:intergenic | 45.0% |
| ! | GTTGGATCGTCGATTGATTG+AGG | - | chr4_1:58699945-58699964 | None:intergenic | 45.0% |
| AAACCCAGGCTAAACCACAA+CGG | + | chr4_1:58700100-58700119 | Msa0559510:CDS | 45.0% | |
| GTGGTCCCACTAAGAAATCA+GGG | + | chr4_1:58700125-58700144 | Msa0559510:CDS | 45.0% | |
| CTTGCTCCCTGATTTCTTAG+TGG | - | chr4_1:58700134-58700153 | None:intergenic | 45.0% | |
| ! | AGGAAAAGGTCGTTTGTTGC+CGG | - | chr4_1:58700164-58700183 | None:intergenic | 45.0% |
| ! | CAACAAACGACCTTTTCCTG+CGG | + | chr4_1:58700165-58700184 | Msa0559510:CDS | 45.0% |
| ACATCAGCAGCAAAATCCGA+CGG | - | chr4_1:58700421-58700440 | None:intergenic | 45.0% | |
| GTGTTAACATCATGGCCCTT+GGG | - | chr4_1:58700478-58700497 | None:intergenic | 45.0% | |
| AGTGTTAACATCATGGCCCT+TGG | - | chr4_1:58700479-58700498 | None:intergenic | 45.0% | |
| ! | ATGAATTACAGGCTAGCTCG+TGG | + | chr4_1:58700578-58700597 | Msa0559510:CDS | 45.0% |
| GAACCATGTTGAACCAGAGA+GGG | + | chr4_1:58700600-58700619 | Msa0559510:CDS | 45.0% | |
| ! | TTTCCCTCTCTGGTTCAACA+TGG | - | chr4_1:58700606-58700625 | None:intergenic | 45.0% |
| ATGTTGAACCAGAGAGGGAA+AGG | + | chr4_1:58700605-58700624 | Msa0559510:CDS | 45.0% | |
| TGTTGAACCAGAGAGGGAAA+GGG | + | chr4_1:58700606-58700625 | Msa0559510:CDS | 45.0% | |
| !!! | TCTTGGTGTTTTGCTACTGG+TGG | - | chr4_1:58700670-58700689 | None:intergenic | 45.0% |
| !! | TTAGAAGTACTAGCAGGCTC+AGG | - | chr4_1:58700700-58700719 | None:intergenic | 45.0% |
| AACTGGTGACTGAGCTAATG+GGG | - | chr4_1:58700743-58700762 | None:intergenic | 45.0% | |
| GAACTGGTGACTGAGCTAAT+GGG | - | chr4_1:58700744-58700763 | None:intergenic | 45.0% | |
| ! | TTATTTGGATCCCTGGCCTT+TGG | - | chr4_1:58700820-58700839 | None:intergenic | 45.0% |
| ! | TTCCCTCTTATTTGGATCCC+TGG | - | chr4_1:58700827-58700846 | None:intergenic | 45.0% |
| ! | GATTTTGCCACCAGAGAAGA+TGG | + | chr4_1:58700888-58700907 | Msa0559510:CDS | 45.0% |
| ACTACCTGTTCCATCTTCTC+TGG | - | chr4_1:58700901-58700920 | None:intergenic | 45.0% | |
| AAGGAAGAGAAATGGGCATC+TGG | + | chr4_1:58700930-58700949 | Msa0559510:CDS | 45.0% | |
| TGTTGACACAGAGACTCTCT+GGG | + | chr4_1:58700990-58701009 | Msa0559510:CDS | 45.0% | |
| ! | TCTCTGGGAACTTGATCGAT+TGG | + | chr4_1:58701005-58701024 | Msa0559510:CDS | 45.0% |
| GTGCCTTCAAACAAAGGCAA+TGG | + | chr4_1:58701090-58701109 | Msa0559510:CDS | 45.0% | |
| GCCTTCAAACAAAGGCAATG+GGG | + | chr4_1:58701092-58701111 | Msa0559510:CDS | 45.0% | |
| ! | ACCCCATTGCCTTTGTTTGA+AGG | - | chr4_1:58701096-58701115 | None:intergenic | 45.0% |
| GTTGACGAGGATGTTGACAT+CGG | + | chr4_1:58701293-58701312 | Msa0559510:CDS | 45.0% | |
| CTTTCTCAATCTCCACAGGT+GGG | - | chr4_1:58701343-58701362 | None:intergenic | 45.0% | |
| TCTTTCTCAATCTCCACAGG+TGG | - | chr4_1:58701344-58701363 | None:intergenic | 45.0% | |
| !! | AAAGATATGGGTGCTACTGG+TGG | + | chr4_1:58701365-58701384 | Msa0559510:CDS | 45.0% |
| AGAGGTTATACCACTAGACG+AGG | - | chr4_1:58701438-58701457 | None:intergenic | 45.0% | |
| ! | TTCAGGAAGTGACTCTGAAG+CGG | + | chr4_1:58701550-58701569 | Msa0559510:CDS | 45.0% |
| ! | CCAATTTGGTTCGTTACCGT+TGG | - | chr4_1:58699819-58699838 | None:intergenic | 45.0% |
| CCAACGGTAACGAACCAAAT+TGG | + | chr4_1:58699816-58699835 | Msa0559510:CDS | 45.0% | |
| !! | TTGAGGAAGCGTCATCTGAT+GGG | - | chr4_1:58699928-58699947 | None:intergenic | 45.0% |
| !! | ATTGAGGAAGCGTCATCTGA+TGG | - | chr4_1:58699929-58699948 | None:intergenic | 45.0% |
| ! | GTTGGATCGTCGATTGATTG+AGG | - | chr4_1:58699945-58699964 | None:intergenic | 45.0% |
| AAACCCAGGCTAAACCACAA+CGG | + | chr4_1:58700100-58700119 | Msa0559510:CDS | 45.0% | |
| GTGGTCCCACTAAGAAATCA+GGG | + | chr4_1:58700125-58700144 | Msa0559510:CDS | 45.0% | |
| CTTGCTCCCTGATTTCTTAG+TGG | - | chr4_1:58700134-58700153 | None:intergenic | 45.0% | |
| ! | AGGAAAAGGTCGTTTGTTGC+CGG | - | chr4_1:58700164-58700183 | None:intergenic | 45.0% |
| ! | CAACAAACGACCTTTTCCTG+CGG | + | chr4_1:58700165-58700184 | Msa0559510:CDS | 45.0% |
| ACATCAGCAGCAAAATCCGA+CGG | - | chr4_1:58700421-58700440 | None:intergenic | 45.0% | |
| GTGTTAACATCATGGCCCTT+GGG | - | chr4_1:58700478-58700497 | None:intergenic | 45.0% | |
| AGTGTTAACATCATGGCCCT+TGG | - | chr4_1:58700479-58700498 | None:intergenic | 45.0% | |
| ! | ATGAATTACAGGCTAGCTCG+TGG | + | chr4_1:58700578-58700597 | Msa0559510:CDS | 45.0% |
| GAACCATGTTGAACCAGAGA+GGG | + | chr4_1:58700600-58700619 | Msa0559510:CDS | 45.0% | |
| ! | TTTCCCTCTCTGGTTCAACA+TGG | - | chr4_1:58700606-58700625 | None:intergenic | 45.0% |
| ATGTTGAACCAGAGAGGGAA+AGG | + | chr4_1:58700605-58700624 | Msa0559510:CDS | 45.0% | |
| TGTTGAACCAGAGAGGGAAA+GGG | + | chr4_1:58700606-58700625 | Msa0559510:CDS | 45.0% | |
| !!! | TCTTGGTGTTTTGCTACTGG+TGG | - | chr4_1:58700670-58700689 | None:intergenic | 45.0% |
| !! | TTAGAAGTACTAGCAGGCTC+AGG | - | chr4_1:58700700-58700719 | None:intergenic | 45.0% |
| AACTGGTGACTGAGCTAATG+GGG | - | chr4_1:58700743-58700762 | None:intergenic | 45.0% | |
| GAACTGGTGACTGAGCTAAT+GGG | - | chr4_1:58700744-58700763 | None:intergenic | 45.0% | |
| ! | TTATTTGGATCCCTGGCCTT+TGG | - | chr4_1:58700820-58700839 | None:intergenic | 45.0% |
| ! | TTCCCTCTTATTTGGATCCC+TGG | - | chr4_1:58700827-58700846 | None:intergenic | 45.0% |
| ! | GATTTTGCCACCAGAGAAGA+TGG | + | chr4_1:58700888-58700907 | Msa0559510:CDS | 45.0% |
| ACTACCTGTTCCATCTTCTC+TGG | - | chr4_1:58700901-58700920 | None:intergenic | 45.0% | |
| AAGGAAGAGAAATGGGCATC+TGG | + | chr4_1:58700930-58700949 | Msa0559510:CDS | 45.0% | |
| TGTTGACACAGAGACTCTCT+GGG | + | chr4_1:58700990-58701009 | Msa0559510:CDS | 45.0% | |
| ! | TCTCTGGGAACTTGATCGAT+TGG | + | chr4_1:58701005-58701024 | Msa0559510:CDS | 45.0% |
| GTGCCTTCAAACAAAGGCAA+TGG | + | chr4_1:58701090-58701109 | Msa0559510:CDS | 45.0% | |
| GCCTTCAAACAAAGGCAATG+GGG | + | chr4_1:58701092-58701111 | Msa0559510:CDS | 45.0% | |
| ! | ACCCCATTGCCTTTGTTTGA+AGG | - | chr4_1:58701096-58701115 | None:intergenic | 45.0% |
| GTTGACGAGGATGTTGACAT+CGG | + | chr4_1:58701293-58701312 | Msa0559510:CDS | 45.0% | |
| CTTTCTCAATCTCCACAGGT+GGG | - | chr4_1:58701343-58701362 | None:intergenic | 45.0% | |
| TCTTTCTCAATCTCCACAGG+TGG | - | chr4_1:58701344-58701363 | None:intergenic | 45.0% | |
| !! | AAAGATATGGGTGCTACTGG+TGG | + | chr4_1:58701365-58701384 | Msa0559510:CDS | 45.0% |
| AGAGGTTATACCACTAGACG+AGG | - | chr4_1:58701438-58701457 | None:intergenic | 45.0% | |
| ! | TTCAGGAAGTGACTCTGAAG+CGG | + | chr4_1:58701550-58701569 | Msa0559510:CDS | 45.0% |
| ! | GCATCGGCGTTATTAGCCAA+CGG | + | chr4_1:58699800-58699819 | Msa0559510:CDS | 50.0% |
| CCTCTGTGTTGCAGCCAATT+TGG | - | chr4_1:58699833-58699852 | None:intergenic | 50.0% | |
| CCAAATTGGCTGCAACACAG+AGG | + | chr4_1:58699830-58699849 | Msa0559510:CDS | 50.0% | |
| AATTGGCTGCAACACAGAGG+CGG | + | chr4_1:58699833-58699852 | Msa0559510:CDS | 50.0% | |
| !! | TGAGGAAGCGTCATCTGATG+GGG | - | chr4_1:58699927-58699946 | None:intergenic | 50.0% |
| GGTGGTCCCACTAAGAAATC+AGG | + | chr4_1:58700124-58700143 | Msa0559510:CDS | 50.0% | |
| TCAGGGAGCAAGAAGGTTTC+CGG | + | chr4_1:58700142-58700161 | Msa0559510:CDS | 50.0% | |
| AATTCCCTCACCGCAGGAAA+AGG | - | chr4_1:58700178-58700197 | None:intergenic | 50.0% | |
| TTCTTCAATTCCCTCACCGC+AGG | - | chr4_1:58700184-58700203 | None:intergenic | 50.0% | |
| AGAGATTGGGGATGCGATGA+AGG | + | chr4_1:58700213-58700232 | Msa0559510:CDS | 50.0% | |
| TTGACAGTGCCCAGATCCAT+AGG | - | chr4_1:58700367-58700386 | None:intergenic | 50.0% | |
| CGGCGTAGAGTAAGCATTCT+TGG | - | chr4_1:58700401-58700420 | None:intergenic | 50.0% | |
| GAATGCTTACTCTACGCCGT+CGG | + | chr4_1:58700402-58700421 | Msa0559510:CDS | 50.0% | |
| GGGCCATGATGTTAACACTG+CGG | + | chr4_1:58700480-58700499 | Msa0559510:CDS | 50.0% | |
| TCGCCGCAGTGTTAACATCA+TGG | - | chr4_1:58700486-58700505 | None:intergenic | 50.0% | |
| GGAACCATGTTGAACCAGAG+AGG | + | chr4_1:58700599-58700618 | Msa0559510:CDS | 50.0% | |
| ACTGGTGGAGGGATTGGAAT+TGG | - | chr4_1:58700655-58700674 | None:intergenic | 50.0% | |
| TTTGCTACTGGTGGAGGGAT+TGG | - | chr4_1:58700661-58700680 | None:intergenic | 50.0% | |
| ! | GGTGTTTTGCTACTGGTGGA+GGG | - | chr4_1:58700666-58700685 | None:intergenic | 50.0% |
| ! | TGGTGTTTTGCTACTGGTGG+AGG | - | chr4_1:58700667-58700686 | None:intergenic | 50.0% |
| !!! | GGCTCTTGGTGTTTTGCTAC+TGG | - | chr4_1:58700673-58700692 | None:intergenic | 50.0% |
| !! | GGCTGGTTAGAAGTACTAGC+AGG | - | chr4_1:58700706-58700725 | None:intergenic | 50.0% |
| ! | AATGGGGGATTCGAAGTGCT+TGG | - | chr4_1:58700727-58700746 | None:intergenic | 50.0% |
| ACTGGTGACTGAGCTAATGG+GGG | - | chr4_1:58700742-58700761 | None:intergenic | 50.0% | |
| CGAACTGGTGACTGAGCTAA+TGG | - | chr4_1:58700745-58700764 | None:intergenic | 50.0% | |
| ! | TCACTTGAAGTGCTCGCGTT+GGG | - | chr4_1:58700777-58700796 | None:intergenic | 50.0% |
| ! | TTCACTTGAAGTGCTCGCGT+TGG | - | chr4_1:58700778-58700797 | None:intergenic | 50.0% |
| !! | TTTGGCTTGGGCTGCTTCAA+GGG | - | chr4_1:58700802-58700821 | None:intergenic | 50.0% |
| AGGCCAGGGATCCAAATAAG+AGG | + | chr4_1:58700821-58700840 | Msa0559510:CDS | 50.0% | |
| GGCCAGGGATCCAAATAAGA+GGG | + | chr4_1:58700822-58700841 | Msa0559510:CDS | 50.0% | |
| ACCTGTTCCATCTTCTCTGG+TGG | - | chr4_1:58700898-58700917 | None:intergenic | 50.0% | |
| ! | AATGGGCATCTGGAGCAAGA+TGG | + | chr4_1:58700940-58700959 | Msa0559510:CDS | 50.0% |
| ! | ATGGGCATCTGGAGCAAGAT+GGG | + | chr4_1:58700941-58700960 | Msa0559510:CDS | 50.0% |
| CTGTTGACACAGAGACTCTC+TGG | + | chr4_1:58700989-58701008 | Msa0559510:CDS | 50.0% | |
| GATTAAGCGGCAGGCACTAA+TGG | + | chr4_1:58701056-58701075 | Msa0559510:CDS | 50.0% | |
| GGAATTGCCTGATAGGGAGA+AGG | + | chr4_1:58701220-58701239 | Msa0559510:intron | 50.0% | |
| GCATCAACCTTCTCCCTATC+AGG | - | chr4_1:58701230-58701249 | None:intergenic | 50.0% | |
| TGATGCAACCACTCCTTCTG+AGG | + | chr4_1:58701244-58701263 | Msa0559510:CDS | 50.0% | |
| GATGCAACCACTCCTTCTGA+GGG | + | chr4_1:58701245-58701264 | Msa0559510:CDS | 50.0% | |
| ATGCAACCACTCCTTCTGAG+GGG | + | chr4_1:58701246-58701265 | Msa0559510:CDS | 50.0% | |
| TTCTGCTTCTTCCCCTCAGA+AGG | - | chr4_1:58701260-58701279 | None:intergenic | 50.0% | |
| ACAGGTGGGAAGTTGTTTGC+TGG | - | chr4_1:58701329-58701348 | None:intergenic | 50.0% | |
| AGCAAACAACTTCCCACCTG+TGG | + | chr4_1:58701328-58701347 | Msa0559510:CDS | 50.0% | |
| GGAATCACTACCAGAACTGC+TGG | - | chr4_1:58701417-58701436 | None:intergenic | 50.0% | |
| GGTAGTGATTCCTCGTCTAG+TGG | + | chr4_1:58701425-58701444 | Msa0559510:CDS | 50.0% | |
| TCGGATTCAGGGAGTTCTTC+AGG | + | chr4_1:58701533-58701552 | Msa0559510:CDS | 50.0% | |
| !! | TCAGGAAGTGACTCTGAAGC+GGG | + | chr4_1:58701551-58701570 | Msa0559510:CDS | 50.0% |
| ! | GCATCGGCGTTATTAGCCAA+CGG | + | chr4_1:58699800-58699819 | Msa0559510:CDS | 50.0% |
| CCTCTGTGTTGCAGCCAATT+TGG | - | chr4_1:58699833-58699852 | None:intergenic | 50.0% | |
| CCAAATTGGCTGCAACACAG+AGG | + | chr4_1:58699830-58699849 | Msa0559510:CDS | 50.0% | |
| AATTGGCTGCAACACAGAGG+CGG | + | chr4_1:58699833-58699852 | Msa0559510:CDS | 50.0% | |
| !! | TGAGGAAGCGTCATCTGATG+GGG | - | chr4_1:58699927-58699946 | None:intergenic | 50.0% |
| GGTGGTCCCACTAAGAAATC+AGG | + | chr4_1:58700124-58700143 | Msa0559510:CDS | 50.0% | |
| TCAGGGAGCAAGAAGGTTTC+CGG | + | chr4_1:58700142-58700161 | Msa0559510:CDS | 50.0% | |
| AATTCCCTCACCGCAGGAAA+AGG | - | chr4_1:58700178-58700197 | None:intergenic | 50.0% | |
| TTCTTCAATTCCCTCACCGC+AGG | - | chr4_1:58700184-58700203 | None:intergenic | 50.0% | |
| AGAGATTGGGGATGCGATGA+AGG | + | chr4_1:58700213-58700232 | Msa0559510:CDS | 50.0% | |
| TTGACAGTGCCCAGATCCAT+AGG | - | chr4_1:58700367-58700386 | None:intergenic | 50.0% | |
| CGGCGTAGAGTAAGCATTCT+TGG | - | chr4_1:58700401-58700420 | None:intergenic | 50.0% | |
| GAATGCTTACTCTACGCCGT+CGG | + | chr4_1:58700402-58700421 | Msa0559510:CDS | 50.0% | |
| GGGCCATGATGTTAACACTG+CGG | + | chr4_1:58700480-58700499 | Msa0559510:CDS | 50.0% | |
| TCGCCGCAGTGTTAACATCA+TGG | - | chr4_1:58700486-58700505 | None:intergenic | 50.0% | |
| GGAACCATGTTGAACCAGAG+AGG | + | chr4_1:58700599-58700618 | Msa0559510:CDS | 50.0% | |
| ACTGGTGGAGGGATTGGAAT+TGG | - | chr4_1:58700655-58700674 | None:intergenic | 50.0% | |
| TTTGCTACTGGTGGAGGGAT+TGG | - | chr4_1:58700661-58700680 | None:intergenic | 50.0% | |
| ! | GGTGTTTTGCTACTGGTGGA+GGG | - | chr4_1:58700666-58700685 | None:intergenic | 50.0% |
| ! | TGGTGTTTTGCTACTGGTGG+AGG | - | chr4_1:58700667-58700686 | None:intergenic | 50.0% |
| !!! | GGCTCTTGGTGTTTTGCTAC+TGG | - | chr4_1:58700673-58700692 | None:intergenic | 50.0% |
| !! | GGCTGGTTAGAAGTACTAGC+AGG | - | chr4_1:58700706-58700725 | None:intergenic | 50.0% |
| ! | AATGGGGGATTCGAAGTGCT+TGG | - | chr4_1:58700727-58700746 | None:intergenic | 50.0% |
| ACTGGTGACTGAGCTAATGG+GGG | - | chr4_1:58700742-58700761 | None:intergenic | 50.0% | |
| CGAACTGGTGACTGAGCTAA+TGG | - | chr4_1:58700745-58700764 | None:intergenic | 50.0% | |
| ! | TCACTTGAAGTGCTCGCGTT+GGG | - | chr4_1:58700777-58700796 | None:intergenic | 50.0% |
| ! | TTCACTTGAAGTGCTCGCGT+TGG | - | chr4_1:58700778-58700797 | None:intergenic | 50.0% |
| !! | TTTGGCTTGGGCTGCTTCAA+GGG | - | chr4_1:58700802-58700821 | None:intergenic | 50.0% |
| AGGCCAGGGATCCAAATAAG+AGG | + | chr4_1:58700821-58700840 | Msa0559510:CDS | 50.0% | |
| GGCCAGGGATCCAAATAAGA+GGG | + | chr4_1:58700822-58700841 | Msa0559510:CDS | 50.0% | |
| ACCTGTTCCATCTTCTCTGG+TGG | - | chr4_1:58700898-58700917 | None:intergenic | 50.0% | |
| ! | AATGGGCATCTGGAGCAAGA+TGG | + | chr4_1:58700940-58700959 | Msa0559510:CDS | 50.0% |
| ! | ATGGGCATCTGGAGCAAGAT+GGG | + | chr4_1:58700941-58700960 | Msa0559510:CDS | 50.0% |
| CTGTTGACACAGAGACTCTC+TGG | + | chr4_1:58700989-58701008 | Msa0559510:CDS | 50.0% | |
| GATTAAGCGGCAGGCACTAA+TGG | + | chr4_1:58701056-58701075 | Msa0559510:CDS | 50.0% | |
| GGAATTGCCTGATAGGGAGA+AGG | + | chr4_1:58701220-58701239 | Msa0559510:intron | 50.0% | |
| GCATCAACCTTCTCCCTATC+AGG | - | chr4_1:58701230-58701249 | None:intergenic | 50.0% | |
| TGATGCAACCACTCCTTCTG+AGG | + | chr4_1:58701244-58701263 | Msa0559510:CDS | 50.0% | |
| GATGCAACCACTCCTTCTGA+GGG | + | chr4_1:58701245-58701264 | Msa0559510:CDS | 50.0% | |
| ATGCAACCACTCCTTCTGAG+GGG | + | chr4_1:58701246-58701265 | Msa0559510:CDS | 50.0% | |
| TTCTGCTTCTTCCCCTCAGA+AGG | - | chr4_1:58701260-58701279 | None:intergenic | 50.0% | |
| ACAGGTGGGAAGTTGTTTGC+TGG | - | chr4_1:58701329-58701348 | None:intergenic | 50.0% | |
| AGCAAACAACTTCCCACCTG+TGG | + | chr4_1:58701328-58701347 | Msa0559510:CDS | 50.0% | |
| GGAATCACTACCAGAACTGC+TGG | - | chr4_1:58701417-58701436 | None:intergenic | 50.0% | |
| GGTAGTGATTCCTCGTCTAG+TGG | + | chr4_1:58701425-58701444 | Msa0559510:CDS | 50.0% | |
| TCGGATTCAGGGAGTTCTTC+AGG | + | chr4_1:58701533-58701552 | Msa0559510:CDS | 50.0% | |
| !! | TCAGGAAGTGACTCTGAAGC+GGG | + | chr4_1:58701551-58701570 | Msa0559510:CDS | 50.0% |
| AGGCGGTGGAGCTGAATTCA+TGG | + | chr4_1:58699850-58699869 | Msa0559510:CDS | 55.0% | |
| GGCGGTGGAGCTGAATTCAT+GGG | + | chr4_1:58699851-58699870 | Msa0559510:CDS | 55.0% | |
| CCACCGTTGTGGTTTAGCCT+GGG | - | chr4_1:58700106-58700125 | None:intergenic | 55.0% | |
| ACCACCGTTGTGGTTTAGCC+TGG | - | chr4_1:58700107-58700126 | None:intergenic | 55.0% | |
| AGGCTAAACCACAACGGTGG+TGG | + | chr4_1:58700106-58700125 | Msa0559510:CDS | 55.0% | |
| ! | AACGACCTTTTCCTGCGGTG+AGG | + | chr4_1:58700170-58700189 | Msa0559510:CDS | 55.0% |
| ! | ACGACCTTTTCCTGCGGTGA+GGG | + | chr4_1:58700171-58700190 | Msa0559510:CDS | 55.0% |
| AACCAGAGAGGGAAAGGGAG+AGG | + | chr4_1:58700611-58700630 | Msa0559510:CDS | 55.0% | |
| ACCAGAGAGGGAAAGGGAGA+GGG | + | chr4_1:58700612-58700631 | Msa0559510:CDS | 55.0% | |
| ! | CACTTGAAGTGCTCGCGTTG+GGG | - | chr4_1:58700776-58700795 | None:intergenic | 55.0% |
| !! | CTTTGGCTTGGGCTGCTTCA+AGG | - | chr4_1:58700803-58700822 | None:intergenic | 55.0% |
| CTTGAAGCAGCCCAAGCCAA+AGG | + | chr4_1:58700801-58700820 | Msa0559510:CDS | 55.0% | |
| GCCACCAGAGAAGATGGAAC+AGG | + | chr4_1:58700894-58700913 | Msa0559510:CDS | 55.0% | |
| ! | TGGGCATCTGGAGCAAGATG+GGG | + | chr4_1:58700942-58700961 | Msa0559510:CDS | 55.0% |
| GGTGAGCAAGATTAAGCGGC+AGG | + | chr4_1:58701047-58701066 | Msa0559510:CDS | 55.0% | |
| CTTCTTCCCCTCAGAAGGAG+TGG | - | chr4_1:58701255-58701274 | None:intergenic | 55.0% | |
| !! | GATATGGGTGCTACTGGTGG+CGG | + | chr4_1:58701368-58701387 | Msa0559510:CDS | 55.0% |
| GGTGCCAGTAGTAGTTCCAG+TGG | + | chr4_1:58701389-58701408 | Msa0559510:CDS | 55.0% | |
| GGAGCCACTGGAACTACTAC+TGG | - | chr4_1:58701396-58701415 | None:intergenic | 55.0% | |
| !! | AGTGACTCTGAAGCGGGCAA+TGG | + | chr4_1:58701557-58701576 | Msa0559510:CDS | 55.0% |
| AGGCGGTGGAGCTGAATTCA+TGG | + | chr4_1:58699850-58699869 | Msa0559510:CDS | 55.0% | |
| GGCGGTGGAGCTGAATTCAT+GGG | + | chr4_1:58699851-58699870 | Msa0559510:CDS | 55.0% | |
| CCACCGTTGTGGTTTAGCCT+GGG | - | chr4_1:58700106-58700125 | None:intergenic | 55.0% | |
| ACCACCGTTGTGGTTTAGCC+TGG | - | chr4_1:58700107-58700126 | None:intergenic | 55.0% | |
| AGGCTAAACCACAACGGTGG+TGG | + | chr4_1:58700106-58700125 | Msa0559510:CDS | 55.0% | |
| ! | AACGACCTTTTCCTGCGGTG+AGG | + | chr4_1:58700170-58700189 | Msa0559510:CDS | 55.0% |
| ! | ACGACCTTTTCCTGCGGTGA+GGG | + | chr4_1:58700171-58700190 | Msa0559510:CDS | 55.0% |
| AACCAGAGAGGGAAAGGGAG+AGG | + | chr4_1:58700611-58700630 | Msa0559510:CDS | 55.0% | |
| ACCAGAGAGGGAAAGGGAGA+GGG | + | chr4_1:58700612-58700631 | Msa0559510:CDS | 55.0% | |
| ! | CACTTGAAGTGCTCGCGTTG+GGG | - | chr4_1:58700776-58700795 | None:intergenic | 55.0% |
| !! | CTTTGGCTTGGGCTGCTTCA+AGG | - | chr4_1:58700803-58700822 | None:intergenic | 55.0% |
| CTTGAAGCAGCCCAAGCCAA+AGG | + | chr4_1:58700801-58700820 | Msa0559510:CDS | 55.0% | |
| GCCACCAGAGAAGATGGAAC+AGG | + | chr4_1:58700894-58700913 | Msa0559510:CDS | 55.0% | |
| ! | TGGGCATCTGGAGCAAGATG+GGG | + | chr4_1:58700942-58700961 | Msa0559510:CDS | 55.0% |
| GGTGAGCAAGATTAAGCGGC+AGG | + | chr4_1:58701047-58701066 | Msa0559510:CDS | 55.0% | |
| CTTCTTCCCCTCAGAAGGAG+TGG | - | chr4_1:58701255-58701274 | None:intergenic | 55.0% | |
| !! | GATATGGGTGCTACTGGTGG+CGG | + | chr4_1:58701368-58701387 | Msa0559510:CDS | 55.0% |
| GGTGCCAGTAGTAGTTCCAG+TGG | + | chr4_1:58701389-58701408 | Msa0559510:CDS | 55.0% | |
| GGAGCCACTGGAACTACTAC+TGG | - | chr4_1:58701396-58701415 | None:intergenic | 55.0% | |
| !! | AGTGACTCTGAAGCGGGCAA+TGG | + | chr4_1:58701557-58701576 | Msa0559510:CDS | 55.0% |
| CCCAGGCTAAACCACAACGG+TGG | + | chr4_1:58700103-58700122 | Msa0559510:CDS | 60.0% | |
| TAGTGGGACCACCACCGTTG+TGG | - | chr4_1:58700117-58700136 | None:intergenic | 60.0% | |
| GGGGATGCGATGAAGGCTTG+TGG | + | chr4_1:58700220-58700239 | Msa0559510:CDS | 60.0% | |
| ACCCTCTCCCTTTCCCTCTC+TGG | - | chr4_1:58700616-58700635 | None:intergenic | 60.0% | |
| GTACTAGCAGGCTCAGGCAG+TGG | - | chr4_1:58700694-58700713 | None:intergenic | 60.0% | |
| ! | GGGGATTCGAAGTGCTTGGC+TGG | - | chr4_1:58700723-58700742 | None:intergenic | 60.0% |
| ! | GTTGGGGAGGGTATGCGAAC+TGG | - | chr4_1:58700760-58700779 | None:intergenic | 60.0% |
| ! | TGAAGTGCTCGCGTTGGGGA+GGG | - | chr4_1:58700772-58700791 | None:intergenic | 60.0% |
| ! | TTGAAGTGCTCGCGTTGGGG+AGG | - | chr4_1:58700773-58700792 | None:intergenic | 60.0% |
| ! | GGATCCCTGGCCTTTGGCTT+GGG | - | chr4_1:58700814-58700833 | None:intergenic | 60.0% |
| ! | TGGATCCCTGGCCTTTGGCT+TGG | - | chr4_1:58700815-58700834 | None:intergenic | 60.0% |
| TCCAGTGGCTCCAGCAGTTC+TGG | + | chr4_1:58701404-58701423 | Msa0559510:CDS | 60.0% | |
| ACCAGAACTGCTGGAGCCAC+TGG | - | chr4_1:58701408-58701427 | None:intergenic | 60.0% | |
| CCCAGGCTAAACCACAACGG+TGG | + | chr4_1:58700103-58700122 | Msa0559510:CDS | 60.0% | |
| TAGTGGGACCACCACCGTTG+TGG | - | chr4_1:58700117-58700136 | None:intergenic | 60.0% | |
| GGGGATGCGATGAAGGCTTG+TGG | + | chr4_1:58700220-58700239 | Msa0559510:CDS | 60.0% | |
| ACCCTCTCCCTTTCCCTCTC+TGG | - | chr4_1:58700616-58700635 | None:intergenic | 60.0% | |
| GTACTAGCAGGCTCAGGCAG+TGG | - | chr4_1:58700694-58700713 | None:intergenic | 60.0% | |
| ! | GGGGATTCGAAGTGCTTGGC+TGG | - | chr4_1:58700723-58700742 | None:intergenic | 60.0% |
| ! | GTTGGGGAGGGTATGCGAAC+TGG | - | chr4_1:58700760-58700779 | None:intergenic | 60.0% |
| ! | TGAAGTGCTCGCGTTGGGGA+GGG | - | chr4_1:58700772-58700791 | None:intergenic | 60.0% |
| ! | TTGAAGTGCTCGCGTTGGGG+AGG | - | chr4_1:58700773-58700792 | None:intergenic | 60.0% |
| ! | GGATCCCTGGCCTTTGGCTT+GGG | - | chr4_1:58700814-58700833 | None:intergenic | 60.0% |
| ! | TGGATCCCTGGCCTTTGGCT+TGG | - | chr4_1:58700815-58700834 | None:intergenic | 60.0% |
| TCCAGTGGCTCCAGCAGTTC+TGG | + | chr4_1:58701404-58701423 | Msa0559510:CDS | 60.0% | |
| ACCAGAACTGCTGGAGCCAC+TGG | - | chr4_1:58701408-58701427 | None:intergenic | 60.0% | |
| TGGCTGCAACACAGAGGCGG+TGG | + | chr4_1:58699836-58699855 | Msa0559510:CDS | 65.0% | |
| CAGGCTCAGGCAGTGGCTCT+TGG | - | chr4_1:58700687-58700706 | None:intergenic | 65.0% | |
| AGCAGCCCAAGCCAAAGGCC+AGG | + | chr4_1:58700806-58700825 | Msa0559510:CDS | 65.0% | |
| GCAGCCCAAGCCAAAGGCCA+GGG | + | chr4_1:58700807-58700826 | Msa0559510:CDS | 65.0% | |
| TGGCTGCAACACAGAGGCGG+TGG | + | chr4_1:58699836-58699855 | Msa0559510:CDS | 65.0% | |
| CAGGCTCAGGCAGTGGCTCT+TGG | - | chr4_1:58700687-58700706 | None:intergenic | 65.0% | |
| AGCAGCCCAAGCCAAAGGCC+AGG | + | chr4_1:58700806-58700825 | Msa0559510:CDS | 65.0% | |
| GCAGCCCAAGCCAAAGGCCA+GGG | + | chr4_1:58700807-58700826 | Msa0559510:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 58699797 | 58701589 | 58699797 | ID=Msa0559510;Name=Msa0559510 |
| chr4_1 | mRNA | 58699797 | 58701589 | 58699797 | ID=Msa0559510-mRNA-1;Parent=Msa0559510;Name=Msa0559510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|533 |
| chr4_1 | exon | 58699797 | 58701113 | 58699797 | ID=Msa0559510-mRNA-1:exon:17946;Parent=Msa0559510-mRNA-1 |
| chr4_1 | exon | 58701221 | 58701446 | 58701221 | ID=Msa0559510-mRNA-1:exon:17947;Parent=Msa0559510-mRNA-1 |
| chr4_1 | exon | 58701531 | 58701589 | 58701531 | ID=Msa0559510-mRNA-1:exon:17948;Parent=Msa0559510-mRNA-1 |
| chr4_1 | CDS | 58699797 | 58701113 | 58699797 | ID=Msa0559510-mRNA-1:cds;Parent=Msa0559510-mRNA-1 |
| chr4_1 | CDS | 58701221 | 58701446 | 58701221 | ID=Msa0559510-mRNA-1:cds;Parent=Msa0559510-mRNA-1 |
| chr4_1 | CDS | 58701531 | 58701589 | 58701531 | ID=Msa0559510-mRNA-1:cds;Parent=Msa0559510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
