AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423670 MtrunA17_Chr1g0209161 97.727 836 19 0 1 836 1 836 0.0 1689
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423670 AT1G49540.1 65.077 839 271 12 7 833 7 835 0.0 1108
Msa1423670 AT1G49540.2 65.042 841 270 13 7 833 7 837 0.0 1106

Find 240 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAAACATCCAGATTT+TGG 0.080849 tig0025571:-14116 Msa1423670:CDS
CAGATGGTACTGTTTGTATA+TGG 0.208305 tig0025571:-16251 Msa1423670:CDS
ACCTCTCCATTGATGCTTAC+AGG 0.211910 tig0025571:+15766 None:intergenic
TACATGTATTGATGGAATTA+TGG 0.212375 tig0025571:-16310 Msa1423670:CDS
AACTAACCTTGGGCATAAAT+AGG 0.234409 tig0025571:+14058 None:intergenic
AAGACAAATGCATACGAATT+TGG 0.242871 tig0025571:-15714 Msa1423670:CDS
GAACTGCATTATTTGCTATC+TGG 0.268434 tig0025571:-16526 Msa1423670:CDS
AGAAGAAGAAGAAAGAGAAT+TGG 0.272509 tig0025571:+17156 None:intergenic
ATGGTGGATCGTTCCATCTT+TGG 0.278484 tig0025571:-15300 Msa1423670:CDS
CTGATGGTGCTATTATTCTA+TGG 0.290612 tig0025571:-16498 Msa1423670:CDS
GTACATTCATGTGAGCTAAA+AGG 0.291991 tig0025571:-15826 Msa1423670:CDS
GCTAAAATTGAATCTCCATT+TGG 0.295581 tig0025571:+15331 None:intergenic
ACAGACTCCACAACTCTATT+TGG 0.297076 tig0025571:+11313 None:intergenic
TCCAATCAAAAGAGATTCTA+AGG 0.303182 tig0025571:+15570 None:intergenic
CCATAGAGTTTATGTGATTC+AGG 0.311737 tig0025571:+12717 None:intergenic
TACAGATTGGATCCGGAGTT+TGG 0.311793 tig0025571:-15800 Msa1423670:CDS
TCCATCCTCTTGTCTGTTAT+AGG 0.312730 tig0025571:+11290 None:intergenic
AACGTTTCTTGGGGTGCTTC+TGG 0.315004 tig0025571:-16997 Msa1423670:CDS
TTCTTTATGCTGTGATCATA+AGG 0.318251 tig0025571:-12676 Msa1423670:CDS
ACATATTTGCACCCAAAATC+TGG 0.321358 tig0025571:+14104 None:intergenic
GGATTATCTGGTCATGTTCT+TGG 0.328711 tig0025571:-11530 Msa1423670:CDS
TTCCGTTGGTTCTAAATCTA+TGG 0.332083 tig0025571:-16074 Msa1423670:CDS
CACTGTGCTCTGGGATTCTA+TGG 0.332419 tig0025571:-15367 Msa1423670:CDS
GCGACAAGACAGTGAAAATC+TGG 0.332615 tig0025571:-11473 Msa1423670:CDS
AATGCTTTGTGGTTGATAAC+AGG 0.332640 tig0025571:+15483 None:intergenic
AATAGTGAACAACGTTTCTT+GGG 0.344542 tig0025571:-17007 Msa1423670:CDS
TGGCGACAAAGATACCTTTC+CGG 0.344773 tig0025571:+15952 None:intergenic
GAATAGTGAACAACGTTTCT+TGG 0.352990 tig0025571:-17008 Msa1423670:CDS
GTAGAGGCATGACATATAAA+AGG 0.354208 tig0025571:+11219 None:intergenic
TGTATACACAGCAAAAGAAT+TGG 0.356030 tig0025571:-16548 Msa1423670:intron
ACATGAGGATTGGGTATATT+CGG 0.356150 tig0025571:-15548 Msa1423670:CDS
GAAGAAGAAGAAAGAGAATT+GGG 0.356740 tig0025571:+17157 None:intergenic
GGCTTTGGCAGGTTGGTTCA+TGG 0.357324 tig0025571:-12302 Msa1423670:CDS
ATTCCATCATTTCTTCGATT+GGG 0.357838 tig0025571:+11360 None:intergenic
GCTGTCACACTACTCGTAAA+TGG 0.364831 tig0025571:+11402 None:intergenic
AGTAACCTTGGGGTTGAAAA+TGG 0.365919 tig0025571:+16942 None:intergenic
TGGCAGCCTGAAAAGACTTC+TGG 0.377252 tig0025571:-15427 Msa1423670:CDS
CCTGAATCACATAAACTCTA+TGG 0.383126 tig0025571:-12717 Msa1423670:CDS
GTGAACCTGTTGCAAATTCA+TGG 0.386968 tig0025571:+11496 None:intergenic
GCTTGTTGCTTCTTCATGTA+AGG 0.391628 tig0025571:-12649 Msa1423670:intron
CTACTGCTGTGGCAGAAGTA+TGG 0.394606 tig0025571:-12323 Msa1423670:CDS
TATGACAGTTGTTCATAGTA+AGG 0.395282 tig0025571:-14260 Msa1423670:CDS
CTAAAATTGAATCTCCATTT+GGG 0.396876 tig0025571:+15332 None:intergenic
AAGAAGGAGTTGAAGTGAAA+AGG 0.398466 tig0025571:-17056 Msa1423670:CDS
CGAACTAAGCCACTGTGCTC+TGG 0.400762 tig0025571:-15377 Msa1423670:CDS
TTCTGCCACAGCAGTAGATT+GGG 0.401219 tig0025571:+12329 None:intergenic
TTGAATAGAAATTTGCTACT+TGG 0.403781 tig0025571:+16789 None:intergenic
ACAGAGGGCAGCGAGATTAT+CGG 0.406256 tig0025571:+17105 None:intergenic
TACATTCATGTGAGCTAAAA+GGG 0.406622 tig0025571:-15825 Msa1423670:CDS
AATTCCATCATTTCTTCGAT+TGG 0.407892 tig0025571:+11359 None:intergenic
ACCTCCAATTGAAGATCAAC+TGG 0.411643 tig0025571:-12757 Msa1423670:CDS
TCTGATACAAATGGGGTTGA+TGG 0.415325 tig0025571:-12831 Msa1423670:CDS
CTTCTGCCACAGCAGTAGAT+TGG 0.418879 tig0025571:+12328 None:intergenic
ATTGCGCGGCCTCAGGTTCA+TGG 0.422152 tig0025571:-14298 Msa1423670:CDS
TGGGATTCTATGGTGGTCAT+TGG 0.423535 tig0025571:-15357 Msa1423670:CDS
TTATAGTCTTCTTGCGAGGC+AGG 0.424206 tig0025571:-11565 Msa1423670:CDS
AGAAGGAGTTGAAGTGAAAA+GGG 0.425565 tig0025571:-17055 Msa1423670:CDS
TCTTTATGCTGTGATCATAA+GGG 0.426565 tig0025571:-12675 Msa1423670:CDS
TTATCGATGGCGGAATTGCC+TGG 0.427069 tig0025571:-16046 Msa1423670:CDS
GTTAGCATACCTATACCTAT+AGG 0.427291 tig0025571:+11027 None:intergenic
TGAATAGAAATTTGCTACTT+GGG 0.427437 tig0025571:+16790 None:intergenic
GAAGAGCCAGCCACAAGGAC+AGG 0.427978 tig0025571:+15607 None:intergenic
TCATTACCTGTAAGCATCAA+TGG 0.428341 tig0025571:-15772 Msa1423670:CDS
TGGGAACTGTCCCTTGTTGA+TGG 0.428999 tig0025571:-16478 Msa1423670:CDS
TACCACAATCCCACAAGAAA+GGG 0.429846 tig0025571:-16335 Msa1423670:CDS
GTATGAGATTGCGCGGCCTC+AGG 0.431270 tig0025571:-14305 Msa1423670:CDS
AGCTAAAAGGGCATACAGAT+TGG 0.432748 tig0025571:-15813 Msa1423670:CDS
TACAAATGGGGTTGATGGTC+TGG 0.434125 tig0025571:-12826 Msa1423670:CDS
GAAGTATGGCTTTGGCAGGT+TGG 0.434435 tig0025571:-12309 Msa1423670:CDS
AAGGACAGGACCTTCTATAT+AGG 0.435333 tig0025571:+15621 None:intergenic
AACTGGCATGGCACACACTT+TGG 0.435584 tig0025571:-12740 Msa1423670:CDS
TTTGATTGGACATGAGGATT+GGG 0.435859 tig0025571:-15557 Msa1423670:CDS
CATGAGACCTCTGATACAAA+TGG 0.436275 tig0025571:-12840 Msa1423670:CDS
CTGTATATGCCATTCCCGTT+TGG 0.438205 tig0025571:+15667 None:intergenic
GAAGGTCCTGTCCTTGTGGC+TGG 0.439711 tig0025571:-15613 Msa1423670:CDS
GAAGTGAAAAGGGTATTCAT+TGG 0.440981 tig0025571:-17045 Msa1423670:CDS
AGGGACACAAGCGGATTATC+TGG 0.442277 tig0025571:-11542 Msa1423670:CDS
ATGAGACCTCTGATACAAAT+GGG 0.444909 tig0025571:-12839 Msa1423670:CDS
CACGGCCATGAATTTGCAAC+AGG 0.445611 tig0025571:-11501 Msa1423670:CDS
AGATGGTACTGTTTGTATAT+GGG 0.448027 tig0025571:-16250 Msa1423670:CDS
GGGCGACGGCGATGATGGTT+GGG 0.449048 tig0025571:+17126 None:intergenic
AAAGGGGTTACATGTATTGA+TGG 0.450575 tig0025571:-16318 Msa1423670:CDS
CAAACGGGAATGGCATATAC+AGG 0.452267 tig0025571:-15666 Msa1423670:CDS
CAGAGGGCAGCGAGATTATC+GGG 0.452299 tig0025571:+17106 None:intergenic
ACATGTAACCCCTTTCTTGT+GGG 0.452970 tig0025571:+16326 None:intergenic
CGTCCTTGCAATGGGAGGAT+TGG 0.455070 tig0025571:-16008 Msa1423670:CDS
AACACAGTTGGAACTGCGTC+GGG 0.458249 tig0025571:+12786 None:intergenic
ATTGGGTATATTCGGTTGAA+TGG 0.458591 tig0025571:-15540 Msa1423670:CDS
GGTGGTCATTGGAGCCCAAA+TGG 0.468423 tig0025571:-15346 Msa1423670:CDS
CCTAAAATTTCCCACAGTAC+CGG 0.472671 tig0025571:+17216 None:intergenic
GGTGCAAATATGTCAGCTCT+TGG 0.475040 tig0025571:-14094 Msa1423670:CDS
GTGTTTACAATCACAACAAC+AGG 0.476242 tig0025571:-12174 Msa1423670:intron
ATTGGGTCAGTCAGTGTTAG+TGG 0.477302 tig0025571:+17174 None:intergenic
CTCCCCAATCGAAGAAATGA+TGG 0.478352 tig0025571:-11363 Msa1423670:CDS
TACGTAGCTCCGTGCCAAAC+GGG 0.479132 tig0025571:-15681 Msa1423670:CDS
AGGCAATTCCGCCATCGATA+AGG 0.479680 tig0025571:+16048 None:intergenic
TGACAACTGGCTTACACAAA+AGG 0.480622 tig0025571:-15263 Msa1423670:CDS
CATGCCAGTTGATCTTCAAT+TGG 0.481967 tig0025571:+12753 None:intergenic
GATATAGCATGGGCTAGATC+TGG 0.482923 tig0025571:-15211 Msa1423670:CDS
CGGGCGACGGCGATGATGGT+TGG 0.484590 tig0025571:+17125 None:intergenic
TGGACAAGACTATGATGATC+TGG 0.487149 tig0025571:-15447 Msa1423670:CDS
GTACCACAATCCCACAAGAA+AGG 0.487530 tig0025571:-16336 Msa1423670:CDS
CTTCCGTGGATGCAACCAAA+GGG 0.488239 tig0025571:+15512 None:intergenic
AGAGAAACCTCGACTTTCCA+TGG 0.491446 tig0025571:+14346 None:intergenic
AATTATGGTTTCTCAAACTG+AGG 0.493661 tig0025571:-16295 Msa1423670:CDS
AGTAGCAAATTTCTATTCAA+AGG 0.493848 tig0025571:-16786 Msa1423670:intron
GGATGGAAGCATTGTAGTAC+CGG 0.495177 tig0025571:-11274 Msa1423670:CDS
ACAAGATTCACCTTTACTGC+GGG 0.496063 tig0025571:-15982 Msa1423670:CDS
CTGTGTCACTGTTAAGCTAT+GGG 0.496668 tig0025571:+12257 None:intergenic
CAACTAGAATTTATGCTCCA+TGG 0.497145 tig0025571:-14363 Msa1423670:CDS
TGATGAAGATTTCTTCTCTA+CGG 0.497228 tig0025571:+11449 None:intergenic
TTACGTAGCTCCGTGCCAAA+CGG 0.497618 tig0025571:-15682 Msa1423670:CDS
ACCCCTTTCTTGTGGGATTG+TGG 0.499253 tig0025571:+16333 None:intergenic
CTAGCTGTTGGAATGGAAAA+CGG 0.499403 tig0025571:-11336 Msa1423670:CDS
GTAGTGTGACAGCATTGTCT+TGG 0.501252 tig0025571:-11392 Msa1423670:CDS
AGCTTATCATCCTATATAGA+AGG 0.501427 tig0025571:-15631 Msa1423670:CDS
TGATTGTAAACACAGAGAAC+TGG 0.501451 tig0025571:+12184 None:intergenic
CTGTCATACAATTTATATCA+TGG 0.501729 tig0025571:+14275 None:intergenic
TCTGTGTCACTGTTAAGCTA+TGG 0.504079 tig0025571:+12256 None:intergenic
CTCTTCAAGATGGAGAGTCT+TGG 0.504927 tig0025571:-14327 Msa1423670:CDS
TACATGTAACCCCTTTCTTG+TGG 0.505650 tig0025571:+16325 None:intergenic
GGTCAAATCGTCCTTGCAAT+GGG 0.506094 tig0025571:-16016 Msa1423670:CDS
GCCAGTTGATCTTCAATTGG+AGG 0.508620 tig0025571:+12756 None:intergenic
AAGACTATAACTAATTTCAC+TGG 0.509024 tig0025571:+11578 None:intergenic
GTCGAGGTTTCTCTTCAAGA+TGG 0.509924 tig0025571:-14337 Msa1423670:CDS
AAAATGTTGGTGATGACAAC+TGG 0.510399 tig0025571:-15276 Msa1423670:CDS
CTGTGGCAGAAGTATGGCTT+TGG 0.512071 tig0025571:-12317 Msa1423670:CDS
TGACTGTAAATTATCATGCC+TGG 0.515474 tig0025571:-16104 Msa1423670:CDS
AATGATGGAATTCTAGCTGT+TGG 0.518192 tig0025571:-11348 Msa1423670:CDS
GGCAGAAGTATGGCTTTGGC+AGG 0.518853 tig0025571:-12313 Msa1423670:CDS
TAGTGTGACAGCATTGTCTT+GGG 0.519272 tig0025571:-11391 Msa1423670:CDS
TTTGCATCTACTTCTTCAGA+TGG 0.519491 tig0025571:-16267 Msa1423670:CDS
GAACTAAGCCACTGTGCTCT+GGG 0.520247 tig0025571:-15376 Msa1423670:CDS
AGCTCCGTGCCAAACGGGAA+TGG 0.521165 tig0025571:-15676 Msa1423670:CDS
CCTTTGGTTGCATCCACGGA+AGG 0.522914 tig0025571:-15511 Msa1423670:CDS
ATGACAGTTGTTCATAGTAA+GGG 0.523352 tig0025571:-14259 Msa1423670:CDS
ATAATAATGCATATCGAAGA+AGG 0.523952 tig0025571:-17072 Msa1423670:exon
ATAACAGGCTTCCCCTTCCG+TGG 0.525346 tig0025571:+15498 None:intergenic
TTCCATCATTTCTTCGATTG+GGG 0.526646 tig0025571:+11361 None:intergenic
AGTCTACAACTTGCTTCTTG+TGG 0.530154 tig0025571:-11153 Msa1423670:CDS
TTGCTATCTGGAGATGCTGA+TGG 0.531360 tig0025571:-16514 Msa1423670:CDS
TGGTCAAATCGTCCTTGCAA+TGG 0.532210 tig0025571:-16017 Msa1423670:CDS
TTGACAACAGCTTTGTGACC+AGG 0.532936 tig0025571:+16828 None:intergenic
AAGGGCATACAGATTGGATC+CGG 0.534028 tig0025571:-15807 Msa1423670:CDS
TGCCTCTACAGTAAACCGTC+TGG 0.535874 tig0025571:-11205 Msa1423670:CDS
TTTGGTTGCATCCACGGAAG+GGG 0.535971 tig0025571:-15509 Msa1423670:CDS
AAAAGGGTATTCATTGGAGC+AGG 0.536530 tig0025571:-17039 Msa1423670:CDS
TCACATAAACTCTATGGCCA+TGG 0.537110 tig0025571:-12711 Msa1423670:CDS
CTGTTGTCAATTGCACTCAC+TGG 0.537167 tig0025571:-16815 Msa1423670:CDS
ATAATCTCGCTGCCCTCTGT+CGG 0.545530 tig0025571:-17102 Msa1423670:five_prime_UTR
GTGACAGCATTGTCTTGGGT+TGG 0.548956 tig0025571:-11387 Msa1423670:CDS
TTATCGGGCGACGGCGATGA+TGG 0.549316 tig0025571:+17121 None:intergenic
GGAGGTTCAGTAAACACAGT+TGG 0.549347 tig0025571:+12774 None:intergenic
GATGCAGATAAAATGCTTTG+TGG 0.550954 tig0025571:+15472 None:intergenic
CTACAGTAAACCGTCTGGCA+TGG 0.553191 tig0025571:-11200 Msa1423670:CDS
CTTTGGTTGCATCCACGGAA+GGG 0.553868 tig0025571:-15510 Msa1423670:CDS
AGAAGAGCAGCGGCGAAACC+CGG 0.555080 tig0025571:+11255 None:intergenic
CATCAGCTCCGCCAACAAAA+CGG 0.556187 tig0025571:+14230 None:intergenic
CCTTCCGTGGATGCAACCAA+AGG 0.557493 tig0025571:+15511 None:intergenic
CATCGGTGACTGATATAGCA+TGG 0.557572 tig0025571:-15222 Msa1423670:CDS
ATGCATACGAATTTGGAAGA+TGG 0.561651 tig0025571:-15707 Msa1423670:CDS
AAGAAAATAGCTCATTTCCA+TGG 0.561954 tig0025571:+12694 None:intergenic
TATCCAATCCTCCCATTGCA+AGG 0.562834 tig0025571:+16005 None:intergenic
TGATGGTGCTATTATTCTAT+GGG 0.564507 tig0025571:-16497 Msa1423670:CDS
GGGAACTGTCCCTTGTTGAT+GGG 0.565491 tig0025571:-16477 Msa1423670:CDS
GTTGGTTCATGGAAAGCAGT+TGG 0.566583 tig0025571:-12291 Msa1423670:CDS
TATGCCATTCCCGTTTGGCA+CGG 0.567694 tig0025571:+15672 None:intergenic
TGCCAGACGGTTTACTGTAG+AGG 0.573011 tig0025571:+11203 None:intergenic
TATAGAAGGTCCTGTCCTTG+TGG 0.573054 tig0025571:-15617 Msa1423670:CDS
CTTACACAAAAGGTTCCCTC+TGG 0.573072 tig0025571:-15253 Msa1423670:CDS
TGGAATTCTAGCTGTTGGAA+TGG 0.578033 tig0025571:-11343 Msa1423670:CDS
TACCATAGATTTAGAACCAA+CGG 0.580301 tig0025571:+16072 None:intergenic
ATCAACCCCATTTGTATCAG+AGG 0.580402 tig0025571:+12833 None:intergenic
CGACAAGACAGTGAAAATCT+GGG 0.588108 tig0025571:-11472 Msa1423670:CDS
AAACACAGTTGGAACTGCGT+CGG 0.588864 tig0025571:+12785 None:intergenic
GATCATCATAGTCTTGTCCA+TGG 0.589029 tig0025571:+15450 None:intergenic
TAGTCTTCTTGCGAGGCAGG+AGG 0.589362 tig0025571:-11562 Msa1423670:CDS
TGCGTCGGGAACAGTTTCAA+AGG 0.592159 tig0025571:+12800 None:intergenic
ACTGTCCCTTGTTGATGGGA+AGG 0.592872 tig0025571:-16473 Msa1423670:intron
TATTATCACAGCTCCGACAG+AGG 0.597124 tig0025571:+17089 None:intergenic
AGCTTTGTGACCAGGAAGAG+TGG 0.598753 tig0025571:+16836 None:intergenic
ACGATTTGACCACTACATCC+AGG 0.600975 tig0025571:+16028 None:intergenic
TCCTATAACAGACAAGAGGA+TGG 0.602584 tig0025571:-11291 Msa1423670:CDS
TGACAGTTGTTCATAGTAAG+GGG 0.603153 tig0025571:-14258 Msa1423670:CDS
TATATCAGCTAGCCATGACC+AGG 0.603806 tig0025571:-15179 Msa1423670:intron
TCTGGCATGGAGGAAAATTG+AGG 0.604356 tig0025571:-11187 Msa1423670:CDS
TTGGGTCAGTCAGTGTTAGT+GGG 0.604464 tig0025571:+17175 None:intergenic
AGTCTTCTTGCGAGGCAGGA+GGG 0.605997 tig0025571:-11561 Msa1423670:CDS
ATCGGTGACTGATATAGCAT+GGG 0.610638 tig0025571:-15221 Msa1423670:CDS
ACCTGTAAGCATCAATGGAG+AGG 0.613920 tig0025571:-15767 Msa1423670:CDS
CGAGGCAGGAGGGACACAAG+CGG 0.615848 tig0025571:-11551 Msa1423670:CDS
TAGCTTAACAGTGACACAGA+TGG 0.618590 tig0025571:-12253 Msa1423670:CDS
TGGATGAATGTGGTTACTGT+TGG 0.619332 tig0025571:-15400 Msa1423670:CDS
ATTATCACAGCTCCGACAGA+GGG 0.620979 tig0025571:+17090 None:intergenic
GCGGAATTGCCTGGATGTAG+TGG 0.621195 tig0025571:-16037 Msa1423670:CDS
AAGAAGAAGAGCCAGCCACA+AGG 0.621956 tig0025571:+15602 None:intergenic
AAGATTCACCTTTACTGCGG+GGG 0.621967 tig0025571:-15980 Msa1423670:CDS
TTATGCTCCATGGAAAGTCG+AGG 0.623529 tig0025571:-14353 Msa1423670:CDS
GCAGCGAGATTATCGGGCGA+CGG 0.623846 tig0025571:+17112 None:intergenic
TCCGTGGATGCAACCAAAGG+GGG 0.625596 tig0025571:+15514 None:intergenic
GTACTTCCACTGACGAGTAG+TGG 0.627306 tig0025571:-16222 Msa1423670:intron
GCAGGCCCAATCTACTGCTG+TGG 0.627705 tig0025571:-12334 Msa1423670:intron
CAATTGAAGATCAACTGGCA+TGG 0.629052 tig0025571:-12752 Msa1423670:CDS
TTAAGCTATGGGATTGCAAG+CGG 0.629501 tig0025571:+12268 None:intergenic
CAAATCGTCCTTGCAATGGG+AGG 0.631304 tig0025571:-16013 Msa1423670:CDS
AACAAGATTCACCTTTACTG+CGG 0.631780 tig0025571:-15983 Msa1423670:CDS
ATCTATGGTAGCCTTATCGA+TGG 0.631961 tig0025571:-16059 Msa1423670:CDS
TTTCAAGAGGAACAGAAACA+GGG 0.633274 tig0025571:+10996 None:intergenic
TGTGCTCTGGGATTCTATGG+TGG 0.635038 tig0025571:-15364 Msa1423670:CDS
ATAACAAGACTTCTGCAAAG+TGG 0.637064 tig0025571:+14150 None:intergenic
GATGGAAGCATTGTAGTACC+GGG 0.637075 tig0025571:-11273 Msa1423670:CDS
GGCTTACCACTACTCGTCAG+TGG 0.637295 tig0025571:+16216 None:intergenic
AAAACGGCCAAATAGAGTTG+TGG 0.638326 tig0025571:-11320 Msa1423670:CDS
AGTCTTGGTATGAGATTGCG+CGG 0.641165 tig0025571:-14312 Msa1423670:CDS
GATGTACCTTCCCATCAACA+AGG 0.642227 tig0025571:+16467 None:intergenic
ACCGATGCAAAATGACCAGA+GGG 0.642490 tig0025571:+15238 None:intergenic
GTTGCAAATTCATGGCCGTG+TGG 0.643567 tig0025571:+11504 None:intergenic
CTGAAAAGACTTCTGGTGTG+TGG 0.643767 tig0025571:-15420 Msa1423670:CDS
TCATGTTCTTGGAACCCACA+CGG 0.651148 tig0025571:-11519 Msa1423670:CDS
CTTGGGGTTGAAAATGGCGA+CGG 0.653338 tig0025571:+16948 None:intergenic
ACCACAATCCCACAAGAAAG+GGG 0.653351 tig0025571:-16334 Msa1423670:CDS
ATATCATGGCCATGAACCTG+AGG 0.654048 tig0025571:+14289 None:intergenic
TTGCAAATTCATGGCCGTGT+GGG 0.657111 tig0025571:+11505 None:intergenic
CAGTAAACCGTCTGGCATGG+AGG 0.660516 tig0025571:-11197 Msa1423670:CDS
TTCCGTGGATGCAACCAAAG+GGG 0.666647 tig0025571:+15513 None:intergenic
TCTGTCCTATAACAGACAAG+AGG 0.667351 tig0025571:-11295 Msa1423670:CDS
CACCGATGCAAAATGACCAG+AGG 0.669482 tig0025571:+15237 None:intergenic
TACGCGAACAAGAAGAGCAG+CGG 0.669620 tig0025571:+11245 None:intergenic
TTAGTTATAGTCTTCTTGCG+AGG 0.676218 tig0025571:-11569 Msa1423670:CDS
GTAATGAGAAGTCCAAACTC+CGG 0.676979 tig0025571:+15788 None:intergenic
CAAGATTCACCTTTACTGCG+GGG 0.678899 tig0025571:-15981 Msa1423670:CDS
AAACGGGAATGGCATATACA+GGG 0.680280 tig0025571:-15665 Msa1423670:CDS
TTCTGGTGTGTGGATGAATG+TGG 0.682155 tig0025571:-15410 Msa1423670:CDS
ATAGTGAACAACGTTTCTTG+GGG 0.684400 tig0025571:-17006 Msa1423670:CDS
TATGGTAGCCTTATCGATGG+CGG 0.688793 tig0025571:-16056 Msa1423670:CDS
ATGTACCTTCCCATCAACAA+GGG 0.699218 tig0025571:+16468 None:intergenic
GTCACACTACTCGTAAATGG+AGG 0.699933 tig0025571:+11405 None:intergenic
TGAGACCTCTGATACAAATG+GGG 0.710699 tig0025571:-12838 Msa1423670:CDS
CGGGAATGGCATATACAGGG+AGG 0.738065 tig0025571:-15662 Msa1423670:CDS
CATAGAATCCCAGAGCACAG+TGG 0.755507 tig0025571:+15368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGATCATTTTTTTTTT+TGG - tig0025571:16076-16095 Msa1423670:CDS 10.0%
!! GAAACAAAAATTAAAGATAA+AGG + tig0025571:11262-11281 None:intergenic 15.0%
!! AATCATCAATAACATTATTA+GGG + tig0025571:11580-11599 None:intergenic 15.0%
!! TAATCATCAATAACATTATT+AGG + tig0025571:11581-11600 None:intergenic 15.0%
!! ATGTTAGTAATCTATAATTA+TGG + tig0025571:12236-12255 None:intergenic 15.0%
!! TATCTGTTAATTTATCTATT+AGG - tig0025571:13056-13075 Msa1423670:intron 15.0%
!! TTTAATTAGTTGTATAAACT+TGG - tig0025571:13684-13703 Msa1423670:intron 15.0%
!! AAATACTTGAATAAAACTAT+TGG - tig0025571:14295-14314 Msa1423670:CDS 15.0%
!! TAAATAGGATACAATAATAT+AGG - tig0025571:14443-14462 Msa1423670:intron 15.0%
!! AAATAGGATACAATAATATA+GGG - tig0025571:14444-14463 Msa1423670:intron 15.0%
!! AATTAATGTATATCAAATGT+TGG + tig0025571:15695-15714 None:intergenic 15.0%
!! TACAGATATATCAAAAAATA+AGG + tig0025571:17099-17118 None:intergenic 15.0%
!!! TAATAATTCATATTTTCAAG+AGG + tig0025571:17185-17204 None:intergenic 15.0%
!!! TTCCTTATAGTTTTCTTTTT+GGG - tig0025571:12266-12285 Msa1423670:CDS 20.0%
!!! ATGATGTATTTTTAAATACC+TGG + tig0025571:13007-13026 None:intergenic 20.0%
!!! AGACATTTTCGAATTATAAA+AGG + tig0025571:13103-13122 None:intergenic 20.0%
!! TAGATGATCTATTAACTTAT+TGG - tig0025571:13531-13550 Msa1423670:intron 20.0%
!!! TTTAAAATGCCACATTTTAT+TGG - tig0025571:13587-13606 Msa1423670:intron 20.0%
!! TTATACAACTAATTAAACCA+TGG + tig0025571:13681-13700 None:intergenic 20.0%
!!! AACGTTTTCAAAAATGATAA+TGG + tig0025571:13987-14006 None:intergenic 20.0%
!!! TTTTTTATGTGACAAATAAC+AGG - tig0025571:14153-14172 Msa1423670:CDS 20.0%
!! AATAGGATACAATAATATAG+GGG - tig0025571:14445-14464 Msa1423670:intron 20.0%
!!! TCTTTTCAATTCAATTTCTT+TGG - tig0025571:15022-15041 Msa1423670:intron 20.0%
!! TAACATCAGAAAATAAAACA+CGG + tig0025571:15209-15228 None:intergenic 20.0%
!! AAACAATTATATATCTGTTC+TGG - tig0025571:15243-15262 Msa1423670:CDS 20.0%
!! ATAAATAATTTATGCATTGC+AGG - tig0025571:15813-15832 Msa1423670:CDS 20.0%
!! AAATACTAATCACTTAATTG+TGG - tig0025571:16554-16573 Msa1423670:intron 20.0%
!!! AGAATATTTTTTACTCCTAT+AGG - tig0025571:17123-17142 Msa1423670:five_prime_UTR 20.0%
!!! TGAAGTATTTTTTGCTAAAT+AGG - tig0025571:17219-17238 Msa1423670:five_prime_UTR 20.0%
! ATAATAATGCATATCGAAGA+AGG - tig0025571:11093-11112 Msa1423670:three_prime_UTR 25.0%
!!! TGAATAGAAATTTGCTACTT+GGG + tig0025571:11378-11397 None:intergenic 25.0%
!!! TTGAATAGAAATTTGCTACT+TGG + tig0025571:11379-11398 None:intergenic 25.0%
! AGTAGCAAATTTCTATTCAA+AGG - tig0025571:11379-11398 Msa1423670:CDS 25.0%
!! ATCATAGAGAGTATAGAATT+TGG - tig0025571:11446-11465 Msa1423670:CDS 25.0%
!! ACTTGATAGCTTTCATTTAA+TGG - tig0025571:11755-11774 Msa1423670:intron 25.0%
!!! TCTATTTTTTGCGTTTATAG+TGG - tig0025571:11791-11810 Msa1423670:intron 25.0%
!! TACATGTATTGATGGAATTA+TGG - tig0025571:11855-11874 Msa1423670:intron 25.0%
! ATAACAGTAAACATTGTCAT+TGG + tig0025571:11983-12002 None:intergenic 25.0%
!! GTTCCTTATAGTTTTCTTTT+TGG - tig0025571:12265-12284 Msa1423670:CDS 25.0%
!! AGAGGTAAACAATATTTTTC+TGG - tig0025571:12416-12435 Msa1423670:intron 25.0%
! CTAAAATTGAATCTCCATTT+GGG + tig0025571:12836-12855 None:intergenic 25.0%
!!! TATTTTTAAATACCTGGTCA+TGG + tig0025571:13001-13020 None:intergenic 25.0%
!! AATCTATAGTAAAGCTTTTG+TGG + tig0025571:13035-13054 None:intergenic 25.0%
! TGCGTAGATAAACAAAAAAA+GGG + tig0025571:13480-13499 None:intergenic 25.0%
! ATGCGTAGATAAACAAAAAA+AGG + tig0025571:13481-13500 None:intergenic 25.0%
!! GTGGCATTTTAAACATTTTT+AGG + tig0025571:13580-13599 None:intergenic 25.0%
! TTGTCATTACCAATAAAATG+TGG + tig0025571:13599-13618 None:intergenic 25.0%
! CTGTCATACAATTTATATCA+TGG + tig0025571:13893-13912 None:intergenic 25.0%
! TCAACAAATTAACTAACCTT+GGG + tig0025571:14120-14139 None:intergenic 25.0%
! TTCAACAAATTAACTAACCT+TGG + tig0025571:14121-14140 None:intergenic 25.0%
! ACTTGAATAAAACTATTGGT+TGG - tig0025571:14299-14318 Msa1423670:CDS 25.0%
! TAGTAAATAGTTACAGCTTA+TGG - tig0025571:14336-14355 Msa1423670:CDS 25.0%
! TAAAGGTGAATTAGTAGTTA+AGG - tig0025571:14387-14406 Msa1423670:intron 25.0%
! TAGGAATATTGTGTGTAAAT+AGG - tig0025571:14428-14447 Msa1423670:intron 25.0%
!! TATTTCACATAGCGTATTTT+TGG - tig0025571:14916-14935 Msa1423670:intron 25.0%
!! ACTTTTTATTAACAGCTGTT+AGG + tig0025571:15050-15069 None:intergenic 25.0%
! TAATAAAAAGTTACGAGAGT+TGG - tig0025571:15059-15078 Msa1423670:intron 25.0%
! AATAAAAAGTTACGAGAGTT+GGG - tig0025571:15060-15079 Msa1423670:intron 25.0%
! AACATCAGAAAATAAAACAC+GGG + tig0025571:15208-15227 None:intergenic 25.0%
! ATCCTCAAATTTACAAACTT+TGG + tig0025571:15282-15301 None:intergenic 25.0%
! ATCTTTCTGTCAAATTATAC+AGG + tig0025571:15567-15586 None:intergenic 25.0%
!! TCTTACAATTTTCTTGACTA+TGG - tig0025571:15612-15631 Msa1423670:CDS 25.0%
!!! GAAAAAAGAGCATTAGAAAT+TGG + tig0025571:15673-15692 None:intergenic 25.0%
! TACATTAATTTCAACCAACT+TGG - tig0025571:15705-15724 Msa1423670:CDS 25.0%
!! GCTGATATTTCTACATTATT+TGG - tig0025571:15780-15799 Msa1423670:CDS 25.0%
! TCATAATAGTAATGCAGAAA+AGG + tig0025571:16063-16082 None:intergenic 25.0%
!!! TTTTTTTTGGTGACTTTCTT+TGG - tig0025571:16089-16108 Msa1423670:CDS 25.0%
!! ATTAAGTTGTTCATTCAAAC+AGG - tig0025571:16456-16475 Msa1423670:intron 25.0%
!! TTAAGTTGTTCATTCAAACA+GGG - tig0025571:16457-16476 Msa1423670:intron 25.0%
! AAGACTATAACTAATTTCAC+TGG + tig0025571:16590-16609 None:intergenic 25.0%
!!! TTTTTTACTCCTATAGGTAT+AGG - tig0025571:17129-17148 Msa1423670:five_prime_UTR 25.0%
! TTAGCAAAAAATACTTCATG+TGG + tig0025571:17217-17236 None:intergenic 25.0%
GAAGAAGAAGAAAGAGAATT+GGG + tig0025571:11011-11030 None:intergenic 30.0%
AGAAGAAGAAGAAAGAGAAT+TGG + tig0025571:11012-11031 None:intergenic 30.0%
AATAGTGAACAACGTTTCTT+GGG - tig0025571:11158-11177 Msa1423670:CDS 30.0%
AAGATAAAGGATGAGTGAAA+AGG + tig0025571:11249-11268 None:intergenic 30.0%
GTACACTATATAAGTGCTTA+TGG - tig0025571:11401-11420 Msa1423670:CDS 30.0%
AGATTGTTTGAGAGAGTTTA+TGG + tig0025571:11507-11526 None:intergenic 30.0%
TGTGTATACAAAGTAAGAGA+GGG + tig0025571:11607-11626 None:intergenic 30.0%
TGTATACACAGCAAAAGAAT+TGG - tig0025571:11617-11636 Msa1423670:intron 30.0%
!! TGATGGTGCTATTATTCTAT+GGG - tig0025571:11668-11687 Msa1423670:intron 30.0%
!!! ATTTTTTGCGTTTATAGTGG+AGG - tig0025571:11794-11813 Msa1423670:intron 30.0%
AATTATGGTTTCTCAAACTG+AGG - tig0025571:11870-11889 Msa1423670:intron 30.0%
AGATGGTACTGTTTGTATAT+GGG - tig0025571:11915-11934 Msa1423670:intron 30.0%
ACATTGTCATTGGAAAAGTA+GGG + tig0025571:11973-11992 None:intergenic 30.0%
AACATTGTCATTGGAAAAGT+AGG + tig0025571:11974-11993 None:intergenic 30.0%
GATATTTAGTCCATCATTCT+AGG - tig0025571:12038-12057 Msa1423670:intron 30.0%
! TACCATAGATTTAGAACCAA+CGG + tig0025571:12096-12115 None:intergenic 30.0%
CTCCCAAAAAGAAAACTATA+AGG + tig0025571:12271-12290 None:intergenic 30.0%
! ATAGGCAGAAGAAAAAGTAT+AGG + tig0025571:12308-12327 None:intergenic 30.0%
TACATTCATGTGAGCTAAAA+GGG - tig0025571:12340-12359 Msa1423670:intron 30.0%
AAGACAAATGCATACGAATT+TGG - tig0025571:12451-12470 Msa1423670:intron 30.0%
AGCTTATCATCCTATATAGA+AGG - tig0025571:12534-12553 Msa1423670:intron 30.0%
! TCCTTAGAATCTCTTTTGAT+TGG - tig0025571:12594-12613 Msa1423670:intron 30.0%
TCCAATCAAAAGAGATTCTA+AGG + tig0025571:12598-12617 None:intergenic 30.0%
GCTAAAATTGAATCTCCATT+TGG + tig0025571:12837-12856 None:intergenic 30.0%
!! TCAATTTTAGCACATGGATA+TGG - tig0025571:12846-12865 Msa1423670:CDS 30.0%
! TTCCATCTTTGGAAAAATGT+TGG - tig0025571:12876-12895 Msa1423670:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - tig0025571:13187-13206 Msa1423670:intron 30.0%
TCTCGAGTATGTATCTATTT+CGG - tig0025571:13216-13235 Msa1423670:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - tig0025571:13187-13206 Msa1423670:intron 30.0%
! TCTCGAGTATGTATCTATTT+TGG - tig0025571:13216-13235 Msa1423670:intron 30.0%
AGATTCATCATTATGAATCC+GGG + tig0025571:13365-13384 None:intergenic 30.0%
GAGATTCATCATTATGAATC+CGG + tig0025571:13366-13385 None:intergenic 30.0%
AGTGATTCATTAGAGTGAAT+CGG + tig0025571:13405-13424 None:intergenic 30.0%
TACAGAGTTGACAAAAAAAG+TGG + tig0025571:13450-13469 None:intergenic 30.0%
TAGATAAACAAAAAAAGGGC+TGG + tig0025571:13476-13495 None:intergenic 30.0%
GACAAATTCAAGATAACAAG+TGG + tig0025571:13743-13762 None:intergenic 30.0%
TATGACAGTTGTTCATAGTA+AGG - tig0025571:13905-13924 Msa1423670:intron 30.0%
ATGACAGTTGTTCATAGTAA+GGG - tig0025571:13906-13925 Msa1423670:intron 30.0%
! TTGACAAACATCCAGATTTT+GGG - tig0025571:14050-14069 Msa1423670:intron 30.0%
GAGATCACATTGTTTAATGT+TGG - tig0025571:14184-14203 Msa1423670:CDS 30.0%
TAGTAGTTAAGGTTAGTAGT+TGG - tig0025571:14398-14417 Msa1423670:intron 30.0%
CACACTGATATGTAAATACT+TGG - tig0025571:14471-14490 Msa1423670:intron 30.0%
!! CTCTTTATTTCTGCTATTGA+CGG + tig0025571:14697-14716 None:intergenic 30.0%
! ACATGATCTATTTTCACCAT+AGG - tig0025571:14755-14774 Msa1423670:intron 30.0%
ATTGGAAGCTTTACGTATTA+TGG + tig0025571:14822-14841 None:intergenic 30.0%
!! GAGCATCGGTAATAATATAT+TGG + tig0025571:14840-14859 None:intergenic 30.0%
GAAATAAGTCAAAAAGGGAA+TGG + tig0025571:14868-14887 None:intergenic 30.0%
GGGTTGAAATAAGTCAAAAA+GGG + tig0025571:14873-14892 None:intergenic 30.0%
AGGGTTGAAATAAGTCAAAA+AGG + tig0025571:14874-14893 None:intergenic 30.0%
ATGTTATCAATAGCAGATTG+CGG + tig0025571:14956-14975 None:intergenic 30.0%
AACAAAACCATAGTCATAGA+AGG - tig0025571:15167-15186 Msa1423670:intron 30.0%
ACAAAACCATAGTCATAGAA+GGG - tig0025571:15168-15187 Msa1423670:intron 30.0%
ATATATCTGTTCTGGTGTAT+TGG - tig0025571:15251-15270 Msa1423670:CDS 30.0%
CTCCAAAGTTTGTAAATTTG+AGG - tig0025571:15277-15296 Msa1423670:CDS 30.0%
AAGAAAATAGCTCATTTCCA+TGG + tig0025571:15474-15493 None:intergenic 30.0%
TTCTTTATGCTGTGATCATA+AGG - tig0025571:15489-15508 Msa1423670:CDS 30.0%
TCTTTATGCTGTGATCATAA+GGG - tig0025571:15490-15509 Msa1423670:CDS 30.0%
TATGGAACTGAATTGAACAT+TGG - tig0025571:16145-16164 Msa1423670:intron 30.0%
AATCATTTATACTCTCAGTC+AGG + tig0025571:16196-16215 None:intergenic 30.0%
! ATCACTTAATTGTGGTTTGT+AGG - tig0025571:16562-16581 Msa1423670:intron 30.0%
TGATGAAGATTTCTTCTCTA+CGG + tig0025571:16719-16738 None:intergenic 30.0%
ATTCCATCATTTCTTCGATT+GGG + tig0025571:16808-16827 None:intergenic 30.0%
AATTCCATCATTTCTTCGAT+TGG + tig0025571:16809-16828 None:intergenic 30.0%
!!! TGGGAAATTTTAGGGCTTTT+TGG - tig0025571:10958-10977 Msa1423670:three_prime_UTR 35.0%
!!! GGGAAATTTTAGGGCTTTTT+GGG - tig0025571:10959-10978 Msa1423670:three_prime_UTR 35.0%
AAGAAGGAGTTGAAGTGAAA+AGG - tig0025571:11109-11128 Msa1423670:exon 35.0%
AGAAGGAGTTGAAGTGAAAA+GGG - tig0025571:11110-11129 Msa1423670:exon 35.0%
!! GAAGTGAAAAGGGTATTCAT+TGG - tig0025571:11120-11139 Msa1423670:CDS 35.0%
GAATAGTGAACAACGTTTCT+TGG - tig0025571:11157-11176 Msa1423670:CDS 35.0%
ATAGTGAACAACGTTTCTTG+GGG - tig0025571:11159-11178 Msa1423670:CDS 35.0%
!!! GCTTCTGGTTTTGTTTCTTT+TGG - tig0025571:11183-11202 Msa1423670:CDS 35.0%
CTGTGTATACAAAGTAAGAG+AGG + tig0025571:11608-11627 None:intergenic 35.0%
!! GAACTGCATTATTTGCTATC+TGG - tig0025571:11639-11658 Msa1423670:intron 35.0%
!! CTGATGGTGCTATTATTCTA+TGG - tig0025571:11667-11686 Msa1423670:intron 35.0%
AAAGGGGTTACATGTATTGA+TGG - tig0025571:11847-11866 Msa1423670:intron 35.0%
TTTGCATCTACTTCTTCAGA+TGG - tig0025571:11898-11917 Msa1423670:intron 35.0%
CAGATGGTACTGTTTGTATA+TGG - tig0025571:11914-11933 Msa1423670:intron 35.0%
TTTACAGTCACCTAGAATGA+TGG + tig0025571:12051-12070 None:intergenic 35.0%
TGACTGTAAATTATCATGCC+TGG - tig0025571:12061-12080 Msa1423670:intron 35.0%
!! TTCCGTTGGTTCTAAATCTA+TGG - tig0025571:12091-12110 Msa1423670:intron 35.0%
AACAAGATTCACCTTTACTG+CGG - tig0025571:12182-12201 Msa1423670:CDS 35.0%
AATGTACAAACTGGGTTCAT+AGG + tig0025571:12326-12345 None:intergenic 35.0%
CTCACATGAATGTACAAACT+GGG + tig0025571:12334-12353 None:intergenic 35.0%
GTACATTCATGTGAGCTAAA+AGG - tig0025571:12339-12358 Msa1423670:intron 35.0%
TCATTACCTGTAAGCATCAA+TGG - tig0025571:12393-12412 Msa1423670:intron 35.0%
ATGCATACGAATTTGGAAGA+TGG - tig0025571:12458-12477 Msa1423670:intron 35.0%
!! ATCTCTTTTGATTGGACATG+AGG - tig0025571:12602-12621 Msa1423670:intron 35.0%
!! TTTTGATTGGACATGAGGAT+TGG - tig0025571:12607-12626 Msa1423670:intron 35.0%
TTTGATTGGACATGAGGATT+GGG - tig0025571:12608-12627 Msa1423670:intron 35.0%
ACATGAGGATTGGGTATATT+CGG - tig0025571:12617-12636 Msa1423670:intron 35.0%
ATTGGGTATATTCGGTTGAA+TGG - tig0025571:12625-12644 Msa1423670:intron 35.0%
!! AATGCTTTGTGGTTGATAAC+AGG + tig0025571:12685-12704 None:intergenic 35.0%
GATGCAGATAAAATGCTTTG+TGG + tig0025571:12696-12715 None:intergenic 35.0%
! AAGCATTTTATCTGCATCCA+TGG - tig0025571:12698-12717 Msa1423670:CDS 35.0%
!! GGAGATTCAATTTTAGCACA+TGG - tig0025571:12840-12859 Msa1423670:CDS 35.0%
!! ATTTTAGCACATGGATATGG+TGG - tig0025571:12849-12868 Msa1423670:intron 35.0%
! CACCAACATTTTTCCAAAGA+TGG + tig0025571:12881-12900 None:intergenic 35.0%
!! AAAATGTTGGTGATGACAAC+TGG - tig0025571:12889-12908 Msa1423670:intron 35.0%
CAGTGAGTTAGACAACATAT+AGG + tig0025571:13127-13146 None:intergenic 35.0%
TACTCGAGATTTGTACCAAT+TGG + tig0025571:13205-13224 None:intergenic 35.0%
AGATTCATCATGATGAATCC+GGG + tig0025571:13263-13282 None:intergenic 35.0%
GAGATTCATCATGATGAATC+CGG + tig0025571:13264-13283 None:intergenic 35.0%
TACTCGAGATTAGTACCAAT+TGG + tig0025571:13307-13326 None:intergenic 35.0%
GATTCATCATTATGAATCCG+GGG + tig0025571:13364-13383 None:intergenic 35.0%
TGATTCATTAGAGTGAATCG+GGG + tig0025571:13403-13422 None:intergenic 35.0%
GTGATTCATTAGAGTGAATC+GGG + tig0025571:13404-13423 None:intergenic 35.0%
GAATCTCGATTTAACAACCA+TGG - tig0025571:13661-13680 Msa1423670:intron 35.0%
!! AGTTGTCTGCAATTTTGACA+CGG + tig0025571:13787-13806 None:intergenic 35.0%
CAACTAGAATTTATGCTCCA+TGG - tig0025571:13802-13821 Msa1423670:intron 35.0%
TGACAGTTGTTCATAGTAAG+GGG - tig0025571:13907-13926 Msa1423670:intron 35.0%
ATAACAAGACTTCTGCAAAG+TGG + tig0025571:14018-14037 None:intergenic 35.0%
! CTTGACAAACATCCAGATTT+TGG - tig0025571:14049-14068 Msa1423670:intron 35.0%
ACATATTTGCACCCAAAATC+TGG + tig0025571:14064-14083 None:intergenic 35.0%
CAAAAACCTATTTATGCCCA+AGG - tig0025571:14101-14120 Msa1423670:CDS 35.0%
AACTAACCTTGGGCATAAAT+AGG + tig0025571:14110-14129 None:intergenic 35.0%
TCTTTCTCATTGTTATCTGC+TGG - tig0025571:14210-14229 Msa1423670:CDS 35.0%
AACTTTGACTGCAAAGGATT+TGG - tig0025571:14237-14256 Msa1423670:CDS 35.0%
CATGTTGCTATGCAGAATAA+AGG - tig0025571:14370-14389 Msa1423670:intron 35.0%
AGTTAAGGTTAGTAGTTGGT+TGG - tig0025571:14402-14421 Msa1423670:intron 35.0%
! GTTAGTAGTTGGTTGGTTAT+AGG - tig0025571:14409-14428 Msa1423670:intron 35.0%
! ATACTTGGTGAATAGACCAT+TGG - tig0025571:14486-14505 Msa1423670:intron 35.0%
TTGTCAATTAGTGGCAATAG+TGG - tig0025571:14541-14560 Msa1423670:intron 35.0%
! CTCTTCACTTTAGTTTCCTA+TGG + tig0025571:14774-14793 None:intergenic 35.0%
AGGAAACTAAAGTGAAGAGT+TGG - tig0025571:14775-14794 Msa1423670:intron 35.0%
! CTATTGATAACATTGCTCGT+AGG - tig0025571:14963-14982 Msa1423670:intron 35.0%
TGCATCTCATATTGAGGATA+TGG - tig0025571:15109-15128 Msa1423670:intron 35.0%
GCATCTCATATTGAGGATAT+GGG - tig0025571:15110-15129 Msa1423670:intron 35.0%
ATGAGACCTCTGATACAAAT+GGG - tig0025571:15326-15345 Msa1423670:CDS 35.0%
CCATAGAGTTTATGTGATTC+AGG + tig0025571:15451-15470 None:intergenic 35.0%
CCTGAATCACATAAACTCTA+TGG - tig0025571:15448-15467 Msa1423670:CDS 35.0%
TAGAGCAGTAAAGTGTACAA+CGG + tig0025571:15758-15777 None:intergenic 35.0%
TGATTGTAAACACAGAGAAC+TGG + tig0025571:15984-16003 None:intergenic 35.0%
GTGTTTACAATCACAACAAC+AGG - tig0025571:15991-16010 Msa1423670:CDS 35.0%
! TGGTTGACATTTGTTGAGTT+TGG - tig0025571:16109-16128 Msa1423670:intron 35.0%
! TAAGCGCTTGTGATTTTGTT+CGG - tig0025571:16251-16270 Msa1423670:CDS 35.0%
ACTTATGACATGTCCATAAG+CGG - tig0025571:16291-16310 Msa1423670:CDS 35.0%
AATAACCTGAAAACCGCTTA+TGG + tig0025571:16307-16326 None:intergenic 35.0%
AACGCGTAAAATAAATGCCT+GGG + tig0025571:16484-16503 None:intergenic 35.0%
AAACGCGTAAAATAAATGCC+TGG + tig0025571:16485-16504 None:intergenic 35.0%
TTAGTTATAGTCTTCTTGCG+AGG - tig0025571:16596-16615 Msa1423670:intron 35.0%
TTCCATCATTTCTTCGATTG+GGG + tig0025571:16807-16826 None:intergenic 35.0%
! AATGATGGAATTCTAGCTGT+TGG - tig0025571:16817-16836 Msa1423670:CDS 35.0%
! GTAGAGGCATGACATATAAA+AGG + tig0025571:16949-16968 None:intergenic 35.0%
GTTAGCATACCTATACCTAT+AGG + tig0025571:17141-17160 None:intergenic 35.0%
TTTCAAGAGGAACAGAAACA+GGG + tig0025571:17172-17191 None:intergenic 35.0%
!! TTTTCAAGAGGAACAGAAAC+AGG + tig0025571:17173-17192 None:intergenic 35.0%
CCTAAAATTTCCCACAGTAC+CGG + tig0025571:10952-10971 None:intergenic 40.0%
! CGGTACTGTGGGAAATTTTA+GGG - tig0025571:10950-10969 Msa1423670:three_prime_UTR 40.0%
!! AAAAGGGTATTCATTGGAGC+AGG - tig0025571:11126-11145 Msa1423670:CDS 40.0%
AGTAACCTTGGGGTTGAAAA+TGG + tig0025571:11226-11245 None:intergenic 40.0%
AGTGAAAAGGAGTAACCTTG+GGG + tig0025571:11236-11255 None:intergenic 40.0%
GAGTGAAAAGGAGTAACCTT+GGG + tig0025571:11237-11256 None:intergenic 40.0%
TGAGTGAAAAGGAGTAACCT+TGG + tig0025571:11238-11257 None:intergenic 40.0%
TCAAAATTTGAGCACTCTGC+AGG + tig0025571:11309-11328 None:intergenic 40.0%
!! CAAATTTTGACCACTCTTCC+TGG - tig0025571:11319-11338 Msa1423670:CDS 40.0%
ATGTACCTTCCCATCAACAA+GGG + tig0025571:11700-11719 None:intergenic 40.0%
TACCACAATCCCACAAGAAA+GGG - tig0025571:11830-11849 Msa1423670:intron 40.0%
ACATGTAACCCCTTTCTTGT+GGG + tig0025571:11842-11861 None:intergenic 40.0%
TACATGTAACCCCTTTCTTG+TGG + tig0025571:11843-11862 None:intergenic 40.0%
!! ATCTATGGTAGCCTTATCGA+TGG - tig0025571:12106-12125 Msa1423670:intron 40.0%
ACAAGATTCACCTTTACTGC+GGG - tig0025571:12183-12202 Msa1423670:CDS 40.0%
GCTCACATGAATGTACAAAC+TGG + tig0025571:12335-12354 None:intergenic 40.0%
! AGCTAAAAGGGCATACAGAT+TGG - tig0025571:12352-12371 Msa1423670:intron 40.0%
GTAATGAGAAGTCCAAACTC+CGG + tig0025571:12380-12399 None:intergenic 40.0%
AAACGGGAATGGCATATACA+GGG - tig0025571:12500-12519 Msa1423670:intron 40.0%
AAGGACAGGACCTTCTATAT+AGG + tig0025571:12547-12566 None:intergenic 40.0%
!! GATCATCATAGTCTTGTCCA+TGG + tig0025571:12718-12737 None:intergenic 40.0%
TGGACAAGACTATGATGATC+TGG - tig0025571:12718-12737 Msa1423670:CDS 40.0%
TGGATGAATGTGGTTACTGT+TGG - tig0025571:12765-12784 Msa1423670:CDS 40.0%
! TGACAACTGGCTTACACAAA+AGG - tig0025571:12902-12921 Msa1423670:intron 40.0%
ATCGGTGACTGATATAGCAT+GGG - tig0025571:12944-12963 Msa1423670:intron 40.0%
TGAATCTCATCTTGAATCCC+CGG - tig0025571:13242-13261 Msa1423670:intron 40.0%
GATTCATCATGATGAATCCG+GGG + tig0025571:13262-13281 None:intergenic 40.0%
TGAATCTCATCTTGAATCCC+CGG - tig0025571:13242-13261 Msa1423670:intron 40.0%
GGTGTTAACTTTGACTGCAA+AGG - tig0025571:14231-14250 Msa1423670:CDS 40.0%
TCGTAGGTAGTTGACTGATA+GGG - tig0025571:14268-14287 Msa1423670:CDS 40.0%
TACAGCTTATGGTAAGCTGT+TGG - tig0025571:14347-14366 Msa1423670:CDS 40.0%
!! ACCATTGGCTCTTTGTAGAA+GGG - tig0025571:14501-14520 Msa1423670:intron 40.0%
TAGAAGGGAAACCTTAGAGA+CGG - tig0025571:14516-14535 Msa1423670:intron 40.0%
AATTGACAACTCCGTCTCTA+AGG + tig0025571:14530-14549 None:intergenic 40.0%
TTATCCTAGCTTCGCCATTA+TGG - tig0025571:14626-14645 Msa1423670:intron 40.0%
TAGTGCACACATGGATTCTT+TGG + tig0025571:14734-14753 None:intergenic 40.0%
GATCATGTTTAGTGCACACA+TGG + tig0025571:14743-14762 None:intergenic 40.0%
GAAATAGCAGCTAGAGTTGT+GGG + tig0025571:14902-14921 None:intergenic 40.0%
TGAAATAGCAGCTAGAGTTG+TGG + tig0025571:14903-14922 None:intergenic 40.0%
GGACATATTGTCTACGTACT+TGG - tig0025571:15081-15100 Msa1423670:intron 40.0%
GATGTCTGCATCTCATATTG+AGG - tig0025571:15103-15122 Msa1423670:intron 40.0%
ATATGGGTCCATCCAAATGA+TGG - tig0025571:15126-15145 Msa1423670:intron 40.0%
TATCACTACCAGCCATCATT+TGG + tig0025571:15141-15160 None:intergenic 40.0%
CATGAGACCTCTGATACAAA+TGG - tig0025571:15325-15344 Msa1423670:CDS 40.0%
TGAGACCTCTGATACAAATG+GGG - tig0025571:15327-15346 Msa1423670:CDS 40.0%
ATCAACCCCATTTGTATCAG+AGG + tig0025571:15335-15354 None:intergenic 40.0%
TCTGATACAAATGGGGTTGA+TGG - tig0025571:15334-15353 Msa1423670:CDS 40.0%
ACCTCCAATTGAAGATCAAC+TGG - tig0025571:15408-15427 Msa1423670:CDS 40.0%
CATGCCAGTTGATCTTCAAT+TGG + tig0025571:15415-15434 None:intergenic 40.0%
CAATTGAAGATCAACTGGCA+TGG - tig0025571:15413-15432 Msa1423670:CDS 40.0%
TCACATAAACTCTATGGCCA+TGG - tig0025571:15454-15473 Msa1423670:CDS 40.0%
! GCTTGTTGCTTCTTCATGTA+AGG - tig0025571:15516-15535 Msa1423670:CDS 40.0%
TCATGTAAGGTATGCACTGT+TGG - tig0025571:15529-15548 Msa1423670:CDS 40.0%
! ATGCACTGTTGGTCTAACTA+TGG - tig0025571:15540-15559 Msa1423670:CDS 40.0%
CAAAACGATCTAAGCCAAGT+TGG + tig0025571:15722-15741 None:intergenic 40.0%
! CAACTTGGCTTAGATCGTTT+TGG - tig0025571:15720-15739 Msa1423670:CDS 40.0%
TAAAGTGTACAACGGTGAGA+CGG + tig0025571:15750-15769 None:intergenic 40.0%
TTAAGCTATGGGATTGCAAG+CGG + tig0025571:15900-15919 None:intergenic 40.0%
! CTGTGTCACTGTTAAGCTAT+GGG + tig0025571:15911-15930 None:intergenic 40.0%
! TCTGTGTCACTGTTAAGCTA+TGG + tig0025571:15912-15931 None:intergenic 40.0%
TAGCTTAACAGTGACACAGA+TGG - tig0025571:15912-15931 Msa1423670:intron 40.0%
ACAGATATGCTTGCATTCTG+AGG + tig0025571:16035-16054 None:intergenic 40.0%
! TTTGGAGCACATCGATGTTA+TGG - tig0025571:16127-16146 Msa1423670:intron 40.0%
! AAGCGCTTGTGATTTTGTTC+GGG - tig0025571:16252-16271 Msa1423670:CDS 40.0%
! ATTTTGTTCGGGAGAGCTTA+TGG - tig0025571:16263-16282 Msa1423670:CDS 40.0%
ACGCGTAAAATAAATGCCTG+GGG + tig0025571:16483-16502 None:intergenic 40.0%
GGATTATCTGGTCATGTTCT+TGG - tig0025571:16635-16654 Msa1423670:intron 40.0%
GTGAACCTGTTGCAAATTCA+TGG + tig0025571:16672-16691 None:intergenic 40.0%
CGACAAGACAGTGAAAATCT+GGG - tig0025571:16693-16712 Msa1423670:intron 40.0%
TAGTGTGACAGCATTGTCTT+GGG - tig0025571:16774-16793 Msa1423670:intron 40.0%
! TGGAATTCTAGCTGTTGGAA+TGG - tig0025571:16822-16841 Msa1423670:CDS 40.0%
CTAGCTGTTGGAATGGAAAA+CGG - tig0025571:16829-16848 Msa1423670:CDS 40.0%
AAAACGGCCAAATAGAGTTG+TGG - tig0025571:16845-16864 Msa1423670:CDS 40.0%
ACAGACTCCACAACTCTATT+TGG + tig0025571:16855-16874 None:intergenic 40.0%
TCTGTCCTATAACAGACAAG+AGG - tig0025571:16870-16889 Msa1423670:intron 40.0%
TCCTATAACAGACAAGAGGA+TGG - tig0025571:16874-16893 Msa1423670:intron 40.0%
TCCATCCTCTTGTCTGTTAT+AGG + tig0025571:16878-16897 None:intergenic 40.0%
! AGTCTACAACTTGCTTCTTG+TGG - tig0025571:17012-17031 Msa1423670:CDS 40.0%
! CCGGTACTGTGGGAAATTTT+AGG - tig0025571:10949-10968 Msa1423670:three_prime_UTR 45.0%
TTGGGTCAGTCAGTGTTAGT+GGG + tig0025571:10993-11012 None:intergenic 45.0%
ATTGGGTCAGTCAGTGTTAG+TGG + tig0025571:10994-11013 None:intergenic 45.0%
ATTATCACAGCTCCGACAGA+GGG + tig0025571:11078-11097 None:intergenic 45.0%
TATTATCACAGCTCCGACAG+AGG + tig0025571:11079-11098 None:intergenic 45.0%
! TTGACAACAGCTTTGTGACC+AGG + tig0025571:11340-11359 None:intergenic 45.0%
CTGTTGTCAATTGCACTCAC+TGG - tig0025571:11350-11369 Msa1423670:CDS 45.0%
TTGCTATCTGGAGATGCTGA+TGG - tig0025571:11651-11670 Msa1423670:intron 45.0%
GATGTACCTTCCCATCAACA+AGG + tig0025571:11701-11720 None:intergenic 45.0%
GTACCACAATCCCACAAGAA+AGG - tig0025571:11829-11848 Msa1423670:intron 45.0%
ACCACAATCCCACAAGAAAG+GGG - tig0025571:11831-11850 Msa1423670:intron 45.0%
AACCAACGGAAAAAGAGTCC+AGG + tig0025571:12082-12101 None:intergenic 45.0%
!! TATGGTAGCCTTATCGATGG+CGG - tig0025571:12109-12128 Msa1423670:intron 45.0%
ACGATTTGACCACTACATCC+AGG + tig0025571:12140-12159 None:intergenic 45.0%
TGGTCAAATCGTCCTTGCAA+TGG - tig0025571:12148-12167 Msa1423670:intron 45.0%
GGTCAAATCGTCCTTGCAAT+GGG - tig0025571:12149-12168 Msa1423670:intron 45.0%
TATCCAATCCTCCCATTGCA+AGG + tig0025571:12163-12182 None:intergenic 45.0%
CAAGATTCACCTTTACTGCG+GGG - tig0025571:12184-12203 Msa1423670:CDS 45.0%
AAGATTCACCTTTACTGCGG+GGG - tig0025571:12185-12204 Msa1423670:CDS 45.0%
TGGCGACAAAGATACCTTTC+CGG + tig0025571:12216-12235 None:intergenic 45.0%
! AAGGGCATACAGATTGGATC+CGG - tig0025571:12358-12377 Msa1423670:intron 45.0%
TACAGATTGGATCCGGAGTT+TGG - tig0025571:12365-12384 Msa1423670:intron 45.0%
ACCTGTAAGCATCAATGGAG+AGG - tig0025571:12398-12417 Msa1423670:intron 45.0%
ACCTCTCCATTGATGCTTAC+AGG + tig0025571:12402-12421 None:intergenic 45.0%
CTGTATATGCCATTCCCGTT+TGG + tig0025571:12501-12520 None:intergenic 45.0%
CAAACGGGAATGGCATATAC+AGG - tig0025571:12499-12518 Msa1423670:intron 45.0%
TATAGAAGGTCCTGTCCTTG+TGG - tig0025571:12548-12567 Msa1423670:intron 45.0%
! CACACACCAGAAGTCTTTTC+AGG + tig0025571:12747-12766 None:intergenic 45.0%
CTGAAAAGACTTCTGGTGTG+TGG - tig0025571:12745-12764 Msa1423670:CDS 45.0%
TTCTGGTGTGTGGATGAATG+TGG - tig0025571:12755-12774 Msa1423670:CDS 45.0%
TGGGATTCTATGGTGGTCAT+TGG - tig0025571:12808-12827 Msa1423670:CDS 45.0%
!! ATGGTGGATCGTTCCATCTT+TGG - tig0025571:12865-12884 Msa1423670:intron 45.0%
CTTACACAAAAGGTTCCCTC+TGG - tig0025571:12912-12931 Msa1423670:intron 45.0%
!! TCCCTCTGGTCATTTTGCAT+CGG - tig0025571:12926-12945 Msa1423670:intron 45.0%
ACCGATGCAAAATGACCAGA+GGG + tig0025571:12930-12949 None:intergenic 45.0%
CATCGGTGACTGATATAGCA+TGG - tig0025571:12943-12962 Msa1423670:intron 45.0%
!! GATATAGCATGGGCTAGATC+TGG - tig0025571:12954-12973 Msa1423670:intron 45.0%
TATATCAGCTAGCCATGACC+AGG - tig0025571:12986-13005 Msa1423670:intron 45.0%
TTATGCTCCATGGAAAGTCG+AGG - tig0025571:13812-13831 Msa1423670:intron 45.0%
AGAGAAACCTCGACTTTCCA+TGG + tig0025571:13822-13841 None:intergenic 45.0%
GTCGAGGTTTCTCTTCAAGA+TGG - tig0025571:13828-13847 Msa1423670:intron 45.0%
CTCTTCAAGATGGAGAGTCT+TGG - tig0025571:13838-13857 Msa1423670:intron 45.0%
AGTCTTGGTATGAGATTGCG+CGG - tig0025571:13853-13872 Msa1423670:intron 45.0%
ATATCATGGCCATGAACCTG+AGG + tig0025571:13879-13898 None:intergenic 45.0%
! AAGGGGAATCACCGTTTTGT+TGG - tig0025571:13924-13943 Msa1423670:intron 45.0%
GGTGCAAATATGTCAGCTCT+TGG - tig0025571:14071-14090 Msa1423670:CDS 45.0%
GGATTTGGCTGTATACTCGT+AGG - tig0025571:14252-14271 Msa1423670:CDS 45.0%
CTCGTAGGTAGTTGACTGAT+AGG - tig0025571:14267-14286 Msa1423670:CDS 45.0%
!! GACCATTGGCTCTTTGTAGA+AGG - tig0025571:14500-14519 Msa1423670:intron 45.0%
TCCCTTCTACAAAGAGCCAA+TGG + tig0025571:14505-14524 None:intergenic 45.0%
GAGACGGAGTTGTCAATTAG+TGG - tig0025571:14532-14551 Msa1423670:intron 45.0%
CAGTTTCTGAGCTGATGTAG+CGG - tig0025571:14667-14686 Msa1423670:intron 45.0%
GCTAGAGTTGTGGGCAAATA+GGG + tig0025571:14893-14912 None:intergenic 45.0%
AGCTAGAGTTGTGGGCAAAT+AGG + tig0025571:14894-14913 None:intergenic 45.0%
CAATAGCAGATTGCGGAAAC+TGG + tig0025571:14949-14968 None:intergenic 45.0%
ACTACCAGCCATCATTTGGA+TGG + tig0025571:15137-15156 None:intergenic 45.0%
AACCATAGTCATAGAAGGGC+TGG - tig0025571:15172-15191 Msa1423670:intron 45.0%
TACCAGCCCTTCTATGACTA+TGG + tig0025571:15177-15196 None:intergenic 45.0%
!! TACAAATGGGGTTGATGGTC+TGG - tig0025571:15339-15358 Msa1423670:CDS 45.0%
AAACACAGTTGGAACTGCGT+CGG + tig0025571:15383-15402 None:intergenic 45.0%
GGAGGTTCAGTAAACACAGT+TGG + tig0025571:15394-15413 None:intergenic 45.0%
GCCAGTTGATCTTCAATTGG+AGG + tig0025571:15412-15431 None:intergenic 45.0%
AAAGTGTACAACGGTGAGAC+GGG + tig0025571:15749-15768 None:intergenic 45.0%
TTCTGCCACAGCAGTAGATT+GGG + tig0025571:15839-15858 None:intergenic 45.0%
! GTTGGTTCATGGAAAGCAGT+TGG - tig0025571:15874-15893 Msa1423670:intron 45.0%
! CATGTCCATAAGCGGTTTTC+AGG - tig0025571:16299-16318 Msa1423670:CDS 45.0%
TTATAGTCTTCTTGCGAGGC+AGG - tig0025571:16600-16619 Msa1423670:intron 45.0%
TCATGTTCTTGGAACCCACA+CGG - tig0025571:16646-16665 Msa1423670:intron 45.0%
TTGCAAATTCATGGCCGTGT+GGG + tig0025571:16663-16682 None:intergenic 45.0%
GCGACAAGACAGTGAAAATC+TGG - tig0025571:16692-16711 Msa1423670:intron 45.0%
GTCACACTACTCGTAAATGG+AGG + tig0025571:16763-16782 None:intergenic 45.0%
GCTGTCACACTACTCGTAAA+TGG + tig0025571:16766-16785 None:intergenic 45.0%
GTAGTGTGACAGCATTGTCT+TGG - tig0025571:16773-16792 Msa1423670:intron 45.0%
CTCCCCAATCGAAGAAATGA+TGG - tig0025571:16802-16821 Msa1423670:CDS 45.0%
!! GGATGGAAGCATTGTAGTAC+CGG - tig0025571:16891-16910 Msa1423670:intron 45.0%
!! GATGGAAGCATTGTAGTACC+GGG - tig0025571:16892-16911 Msa1423670:intron 45.0%
! CAATTTTCCTCCATGCCAGA+CGG + tig0025571:16978-16997 None:intergenic 45.0%
TCTGGCATGGAGGAAAATTG+AGG - tig0025571:16978-16997 Msa1423670:CDS 45.0%
ACAGAGGGCAGCGAGATTAT+CGG + tig0025571:11063-11082 None:intergenic 50.0%
ATAATCTCGCTGCCCTCTGT+CGG - tig0025571:11063-11082 Msa1423670:three_prime_UTR 50.0%
! AACGTTTCTTGGGGTGCTTC+TGG - tig0025571:11168-11187 Msa1423670:CDS 50.0%
CTTGGGGTTGAAAATGGCGA+CGG + tig0025571:11220-11239 None:intergenic 50.0%
! AGCTTTGTGACCAGGAAGAG+TGG + tig0025571:11332-11351 None:intergenic 50.0%
TGGGAACTGTCCCTTGTTGA+TGG - tig0025571:11687-11706 Msa1423670:intron 50.0%
GGGAACTGTCCCTTGTTGAT+GGG - tig0025571:11688-11707 Msa1423670:intron 50.0%
! ACTGTCCCTTGTTGATGGGA+AGG - tig0025571:11692-11711 Msa1423670:intron 50.0%
ACCCCTTTCTTGTGGGATTG+TGG + tig0025571:11835-11854 None:intergenic 50.0%
GTACTTCCACTGACGAGTAG+TGG - tig0025571:11943-11962 Msa1423670:intron 50.0%
! TGCCTGGACTCTTTTTCCGT+TGG - tig0025571:12077-12096 Msa1423670:intron 50.0%
AGGCAATTCCGCCATCGATA+AGG + tig0025571:12120-12139 None:intergenic 50.0%
!! TTATCGATGGCGGAATTGCC+TGG - tig0025571:12119-12138 Msa1423670:intron 50.0%
CAAATCGTCCTTGCAATGGG+AGG - tig0025571:12152-12171 Msa1423670:intron 50.0%
TTACGTAGCTCCGTGCCAAA+CGG - tig0025571:12483-12502 Msa1423670:intron 50.0%
TATGCCATTCCCGTTTGGCA+CGG + tig0025571:12496-12515 None:intergenic 50.0%
AAGAAGAAGAGCCAGCCACA+AGG + tig0025571:12566-12585 None:intergenic 50.0%
TTCCGTGGATGCAACCAAAG+GGG + tig0025571:12655-12674 None:intergenic 50.0%
CTTCCGTGGATGCAACCAAA+GGG + tig0025571:12656-12675 None:intergenic 50.0%
CTTTGGTTGCATCCACGGAA+GGG - tig0025571:12655-12674 Msa1423670:CDS 50.0%
TTTGGTTGCATCCACGGAAG+GGG - tig0025571:12656-12675 Msa1423670:CDS 50.0%
TGGCAGCCTGAAAAGACTTC+TGG - tig0025571:12738-12757 Msa1423670:CDS 50.0%
GAACTAAGCCACTGTGCTCT+GGG - tig0025571:12789-12808 Msa1423670:CDS 50.0%
CATAGAATCCCAGAGCACAG+TGG + tig0025571:12800-12819 None:intergenic 50.0%
!! CACTGTGCTCTGGGATTCTA+TGG - tig0025571:12798-12817 Msa1423670:CDS 50.0%
!! TGTGCTCTGGGATTCTATGG+TGG - tig0025571:12801-12820 Msa1423670:CDS 50.0%
CACCGATGCAAAATGACCAG+AGG + tig0025571:12931-12950 None:intergenic 50.0%
GAGTGAATCGGGGTTCATTG+CGG + tig0025571:13393-13412 None:intergenic 50.0%
!! GGGAATCACCGTTTTGTTGG+CGG - tig0025571:13927-13946 Msa1423670:intron 50.0%
CATCAGCTCCGCCAACAAAA+CGG + tig0025571:13938-13957 None:intergenic 50.0%
ATCGCCATAATGGCGAAGCT+AGG + tig0025571:14633-14652 None:intergenic 50.0%
TAGCTTCGCCATTATGGCGA+TGG - tig0025571:14632-14651 Msa1423670:intron 50.0%
CGCTACATCAGCTCAGAAAC+TGG + tig0025571:14669-14688 None:intergenic 50.0%
AGGGAATGGATGCAGAGCAT+CGG + tig0025571:14854-14873 None:intergenic 50.0%
TGCGTCGGGAACAGTTTCAA+AGG + tig0025571:15368-15387 None:intergenic 50.0%
AACACAGTTGGAACTGCGTC+GGG + tig0025571:15382-15401 None:intergenic 50.0%
AACTGGCATGGCACACACTT+TGG - tig0025571:15425-15444 Msa1423670:CDS 50.0%
CTTCTGCCACAGCAGTAGAT+TGG + tig0025571:15840-15859 None:intergenic 50.0%
CTACTGCTGTGGCAGAAGTA+TGG - tig0025571:15842-15861 Msa1423670:intron 50.0%
! CTGTGGCAGAAGTATGGCTT+TGG - tig0025571:15848-15867 Msa1423670:intron 50.0%
!! GAAGTATGGCTTTGGCAGGT+TGG - tig0025571:15856-15875 Msa1423670:intron 50.0%
!! AGGGACACAAGCGGATTATC+TGG - tig0025571:16623-16642 Msa1423670:intron 50.0%
GTTGCAAATTCATGGCCGTG+TGG + tig0025571:16664-16683 None:intergenic 50.0%
CACGGCCATGAATTTGCAAC+AGG - tig0025571:16664-16683 Msa1423670:intron 50.0%
GTGACAGCATTGTCTTGGGT+TGG - tig0025571:16778-16797 Msa1423670:intron 50.0%
TACGCGAACAAGAAGAGCAG+CGG + tig0025571:16923-16942 None:intergenic 50.0%
TGCCTCTACAGTAAACCGTC+TGG - tig0025571:16960-16979 Msa1423670:CDS 50.0%
TGCCAGACGGTTTACTGTAG+AGG + tig0025571:16965-16984 None:intergenic 50.0%
CTACAGTAAACCGTCTGGCA+TGG - tig0025571:16965-16984 Msa1423670:CDS 50.0%
CAGAGGGCAGCGAGATTATC+GGG + tig0025571:11062-11081 None:intergenic 55.0%
!! CGTCGCCATTTTCAACCCCA+AGG - tig0025571:11218-11237 Msa1423670:CDS 55.0%
GGCTTACCACTACTCGTCAG+TGG + tig0025571:11952-11971 None:intergenic 55.0%
GCGGAATTGCCTGGATGTAG+TGG - tig0025571:12128-12147 Msa1423670:intron 55.0%
CGTCCTTGCAATGGGAGGAT+TGG - tig0025571:12157-12176 Msa1423670:intron 55.0%
TTCACCTTTACTGCGGGGGA+AGG - tig0025571:12189-12208 Msa1423670:CDS 55.0%
TACGTAGCTCCGTGCCAAAC+GGG - tig0025571:12484-12503 Msa1423670:intron 55.0%
CGGGAATGGCATATACAGGG+AGG - tig0025571:12503-12522 Msa1423670:intron 55.0%
GGTTGAATGGCAACCCCCTT+TGG - tig0025571:12638-12657 Msa1423670:intron 55.0%
ACCCCCTTTGGTTGCATCCA+CGG - tig0025571:12650-12669 Msa1423670:CDS 55.0%
TCCGTGGATGCAACCAAAGG+GGG + tig0025571:12654-12673 None:intergenic 55.0%
CCTTCCGTGGATGCAACCAA+AGG + tig0025571:12657-12676 None:intergenic 55.0%
CCTTTGGTTGCATCCACGGA+AGG - tig0025571:12654-12673 Msa1423670:CDS 55.0%
ATAACAGGCTTCCCCTTCCG+TGG + tig0025571:12670-12689 None:intergenic 55.0%
CGAACTAAGCCACTGTGCTC+TGG - tig0025571:12788-12807 Msa1423670:CDS 55.0%
GGTGGTCATTGGAGCCCAAA+TGG - tig0025571:12819-12838 Msa1423670:CDS 55.0%
CTTCGCCATTATGGCGATGG+CGG - tig0025571:14635-14654 Msa1423670:intron 55.0%
AACAGCCGCCATCGCCATAA+TGG + tig0025571:14643-14662 None:intergenic 55.0%
GGGTCCATCCAAATGATGGC+TGG - tig0025571:15130-15149 Msa1423670:intron 55.0%
!! GGCAGAAGTATGGCTTTGGC+AGG - tig0025571:15852-15871 Msa1423670:intron 55.0%
!! GGCTTTGGCAGGTTGGTTCA+TGG - tig0025571:15863-15882 Msa1423670:intron 55.0%
GTTCATTCAAACAGGGCCCC+AGG - tig0025571:16464-16483 Msa1423670:intron 55.0%
TAGTCTTCTTGCGAGGCAGG+AGG - tig0025571:16603-16622 Msa1423670:intron 55.0%
AGTCTTCTTGCGAGGCAGGA+GGG - tig0025571:16604-16623 Msa1423670:intron 55.0%
CAGTAAACCGTCTGGCATGG+AGG - tig0025571:16968-16987 Msa1423670:CDS 55.0%
TTATCGGGCGACGGCGATGA+TGG + tig0025571:11047-11066 None:intergenic 60.0%
GCAGCGAGATTATCGGGCGA+CGG + tig0025571:11056-11075 None:intergenic 60.0%
CTTTACTGCGGGGGAAGGAC+CGG - tig0025571:12194-12213 Msa1423670:CDS 60.0%
AGCTCCGTGCCAAACGGGAA+TGG - tig0025571:12489-12508 Msa1423670:intron 60.0%
GAAGGTCCTGTCCTTGTGGC+TGG - tig0025571:12552-12571 Msa1423670:intron 60.0%
GAAGAGCCAGCCACAAGGAC+AGG + tig0025571:12561-12580 None:intergenic 60.0%
GTATGAGATTGCGCGGCCTC+AGG - tig0025571:13860-13879 Msa1423670:intron 60.0%
ATTGCGCGGCCTCAGGTTCA+TGG - tig0025571:13867-13886 Msa1423670:intron 60.0%
GCAGGCCCAATCTACTGCTG+TGG - tig0025571:15831-15850 Msa1423670:CDS 60.0%
AGAAGAGCAGCGGCGAAACC+CGG + tig0025571:16913-16932 None:intergenic 60.0%
! GGGCGACGGCGATGATGGTT+GGG + tig0025571:11042-11061 None:intergenic 65.0%
CGGTCCTTCCCCCGCAGTAA+AGG + tig0025571:12196-12215 None:intergenic 65.0%
CGAGGCAGGAGGGACACAAG+CGG - tig0025571:16614-16633 Msa1423670:intron 65.0%
! CGGGCGACGGCGATGATGGT+TGG + tig0025571:11043-11062 None:intergenic 70.0%
CTGCGGGGGAAGGACCGGAA+AGG - tig0025571:12199-12218 Msa1423670:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0025571 gene 10941 17246 10941 ID=Msa1423670;Name=Msa1423670
tig0025571 mRNA 10941 17246 10941 ID=Msa1423670-mRNA-1;Parent=Msa1423670;Name=Msa1423670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|1|1|1|1|10|172|836
tig0025571 exon 10941 11603 10941 ID=Msa1423670-mRNA-1:exon:3380;Parent=Msa1423670-mRNA-1
tig0025571 exon 12175 12352 12175 ID=Msa1423670-mRNA-1:exon:3379;Parent=Msa1423670-mRNA-1
tig0025571 exon 12650 12867 12650 ID=Msa1423670-mRNA-1:exon:3378;Parent=Msa1423670-mRNA-1
tig0025571 exon 14065 14386 14065 ID=Msa1423670-mRNA-1:exon:3377;Parent=Msa1423670-mRNA-1
tig0025571 exon 15180 15851 15180 ID=Msa1423670-mRNA-1:exon:3376;Parent=Msa1423670-mRNA-1
tig0025571 exon 15967 16127 15967 ID=Msa1423670-mRNA-1:exon:3375;Parent=Msa1423670-mRNA-1
tig0025571 exon 16223 16376 16223 ID=Msa1423670-mRNA-1:exon:3374;Parent=Msa1423670-mRNA-1
tig0025571 exon 16474 16559 16474 ID=Msa1423670-mRNA-1:exon:3373;Parent=Msa1423670-mRNA-1
tig0025571 exon 16787 16874 16787 ID=Msa1423670-mRNA-1:exon:3372;Parent=Msa1423670-mRNA-1
tig0025571 exon 16948 17246 16948 ID=Msa1423670-mRNA-1:exon:3371;Parent=Msa1423670-mRNA-1
tig0025571 five_prime_UTR 17089 17246 17089 ID=Msa1423670-mRNA-1:five_prime_utr;Parent=Msa1423670-mRNA-1
tig0025571 CDS 16948 17088 16948 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 16787 16874 16787 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 16474 16559 16474 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 16223 16376 16223 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 15967 16127 15967 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 15180 15851 15180 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 14065 14386 14065 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 12650 12867 12650 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 12175 12352 12175 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 CDS 11113 11603 11113 ID=Msa1423670-mRNA-1:cds;Parent=Msa1423670-mRNA-1
tig0025571 three_prime_UTR 10941 11112 10941 ID=Msa1423670-mRNA-1:three_prime_utr;Parent=Msa1423670-mRNA-1
Gene Sequence

>Msa1423670

ATGCATATCGAAGAAGGAGTTGAAGTGAAAAGGGTATTCATTGGAGCAGGATGTAACAGAATAGTGAACAACGTTTCTTGGGGTGCTTCTGGTTTTGTTTCTTTTGGAGCTTCAAACGCCGTCGCCATTTTCAACCCCAAGAGTGCTCAAATTTTGACCACTCTTCCTGGTCACAAAGCTGTTGTCAATTGCACTCACTGGCTCCCAAGTAGCAAATTTCTATTCAAAGCAAAAGAATTGGAACTGCATTATTTGCTATCTGGAGATGCTGATGGTGCTATTATTCTATGGGAACTGTCCCTTGTTGATGGGAAGTGGAGGCAAGTGTCACAAGTACCACAATCCCACAAGAAAGGGGTTACATGTATTGATGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGTACTGTTTGTATATGGGAACTTGTACTTCCACTGACGAGTAGTGGTGACTGTAAATTATCATGCCTGGACTCTTTTTCCGTTGGTTCTAAATCTATGGTAGCCTTATCGATGGCGGAATTGCCTGGATGTAGTGGTCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTACTGCGGGGGAAGGACCGGAAAGTTTGTACATTCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTGTAAGCATCAATGGAGAGGTAAACAATATTTTTCTGGTGAGTTCATCTCAAGACAAATGCATACGAATTTGGAAGATGGCATTACGTAGCTCCGTGCCAAACGGGAATGGCATATACAGGGAGGAAGAGTCAAGCTTATCATCCTATATAGAAGGTCCTGTCCTTGTGGCTGGCTCTTCTTCTTTTCAGATATCCTTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTTGAATGGCAACCCCCTTTGGTTGCATCCACGGAAGGGGAAGCCTGTTATCAACCACAAAGCATTTTATCTGCATCCATGGACAAGACTATGATGATCTGGCAGCCTGAAAAGACTTCTGGTGTGTGGATGAATGTGGTTACTGTTGGCGAACTAAGCCACTGTGCTCTGGGATTCTATGGTGGTCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCGTTCCATCTTTGGAAAAATGTTGGTGATGACAACTGGCTTACACAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGATATAGCATGGGCTAGATCTGGTGATTACATTATATCAGCTAGCCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTCGAGGTTTCTCTTCAAGATGGAGAGTCTTGGTATGAGATTGCGCGGCCTCAGGTTCATGGCCATGATATAAATTGTATGACAGTTGTTCATAGTAAGGGGAATCACCGTTTTGTTGGCGGAGCTGATGAGAAAGTTGCTAGAGTGTTTGAAGCTCCATTATCATTTTTGAAAACGTTGAGTAACGCCACTTTGCAGAAGTCTTGTTATTCTGATGACGACTTGACAAACATCCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAAAAACCTATTTATGCCCAAGCTGTACATGAGACCTCTGATACAAATGGGGTTGATGGTCTGGACACCTTTGAAACTGTTCCCGACGCAGTTCCAACTGTGTTTACTGAACCTCCAATTGAAGATCAACTGGCATGGCACACACTTTGGCCTGAATCACATAAACTCTATGGCCATGGAAATGAGCTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTACTGCTGTGGCAGAAGTATGGCTTTGGCAGGTTGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCATAGCTTAACAGTGACACAGATGGAATTCTCACACGATGACAACTTTCTTTTGACTGTCTCAAGAGATCGCCAGTTCTCTGTGTTTACAATCACAACAACAGGAACCAGTGAAATTAGTTATAGTCTTCTTGCGAGGCAGGAGGGACACAAGCGGATTATCTGGTCATGTTCTTGGAACCCACACGGCCATGAATTTGCAACAGGTTCACGCGACAAGACAGTGAAAATCTGGGCCGTAGAGAAGAAATCTTCATCAGTAAGACAACTTATGACTTTACCTCCATTTACGAGTAGTGTGACAGCATTGTCTTGGGTTGGTCTCCCCAATCGAAGAAATGATGGAATTCTAGCTGTTGGAATGGAAAACGGCCAAATAGAGTTGTGGAGTCTGTCCTATAACAGACAAGAGGATGGAAGCATTGTAGTACCGGGTTTCGCCGCTGCTCTTCTTGTTCGCGTAGATCCTTTTATATGTCATGCCTCTACAGTAAACCGTCTGGCATGGAGGAAAATTGAGGAAGATCACAAGAGTCTACAACTTGCTTCTTGTGGAGCTGATAATTGTGTGAGAGTGTTTGATGTAACTGTTTGA
Protein sequence

>Msa1423670

MHIEEGVEVKRVFIGAGCNRIVNNVSWGASGFVSFGASNAVAIFNPKSAQILTTLPGHKAVVNCTHWLPSSKFLFKAKELELHYLLSGDADGAIILWELSLVDGKWRQVSQVPQSHKKGVTCIDGIMVSQTEAMFASTSSDGTVCIWELVLPLTSSGDCKLSCLDSFSVGSKSMVALSMAELPGCSGQIVLAMGGLDNKIHLYCGGRTGKFVHSCELKGHTDWIRSLDFSLPVSINGEVNNIFLVSSSQDKCIRIWKMALRSSVPNGNGIYREEESSLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVEWQPPLVASTEGEACYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGDDNWLTQKVPSGHFASVTDIAWARSGDYIISASHDQTTRIYAPWKVEVSLQDGESWYEIARPQVHGHDINCMTVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLSNATLQKSCYSDDDLTNIQILGANMSALGLSQKPIYAQAVHETSDTNGVDGLDTFETVPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFTITTTGTSEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKKSSSVRQLMTLPPFTSSVTALSWVGLPNRRNDGILAVGMENGQIELWSLSYNRQEDGSIVVPGFAAALLVRVDPFICHASTVNRLAWRKIEEDHKSLQLASCGADNCVRVFDVTV*