AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137130 MtrunA17_Chr1g0209161 95.335 836 19 1 1 816 1 836 0.0 1632
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137130 AT1G49540.1 63.051 839 268 13 7 813 7 835 0.0 1058
Msa0137130 AT1G49540.2 63.020 841 267 14 7 813 7 837 0.0 1055

Find 233 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAAACATCCAGATTT+TGG 0.080849 1_3:-69446893 Msa0137130:CDS
CAGATGGTACTGTTTGTATA+TGG 0.208305 1_3:-69449030 Msa0137130:CDS
ACCTCTCCATTGATGCTTAC+AGG 0.211910 1_3:+69448545 None:intergenic
TACATGTATTGATGGAATTA+TGG 0.212375 1_3:-69449089 Msa0137130:CDS
AACTAACCTTGGGCATAAAT+AGG 0.234409 1_3:+69446835 None:intergenic
AAGACAAATGCATACGAATT+TGG 0.242871 1_3:-69448493 Msa0137130:CDS
AACGTCTCTTGGGGTGCTTC+TGG 0.262838 1_3:-69449775 Msa0137130:CDS
GAACTGCATTATTTGCTATC+TGG 0.268434 1_3:-69449305 Msa0137130:CDS
AGAAGAAGAAGAAAGAGAAT+TGG 0.272509 1_3:+69449931 None:intergenic
ATGGTGGATCGTTCCATCTT+TGG 0.278484 1_3:-69448079 Msa0137130:CDS
CTGATGGTGCTATTATTCTA+TGG 0.290612 1_3:-69449277 Msa0137130:CDS
GTACATTCATGTGAGCTAAA+AGG 0.291991 1_3:-69448605 Msa0137130:CDS
GCTAAAATTGAATCTCCATT+TGG 0.295581 1_3:+69448110 None:intergenic
ACAGACTCCACAACTCTATT+TGG 0.297076 1_3:+69444092 None:intergenic
AGTAACCTTGGGGTCGAAAA+TGG 0.302749 1_3:+69449720 None:intergenic
TCCAATCAAAAGAGATTCTA+AGG 0.303182 1_3:+69448349 None:intergenic
CCATAGAGTTTATGTGATTC+AGG 0.311737 1_3:+69445495 None:intergenic
TACAGATTGGATCCGGAGTT+TGG 0.311793 1_3:-69448579 Msa0137130:CDS
TCCATCCTCTTGTCTGTTAT+AGG 0.312730 1_3:+69444069 None:intergenic
TTCTTTATGCTGTGATCATA+AGG 0.318251 1_3:-69445454 Msa0137130:CDS
ACATATTTGCACCCAAAATC+TGG 0.321358 1_3:+69446881 None:intergenic
GGATTATCTGGTCATGTTCT+TGG 0.328711 1_3:-69444309 Msa0137130:CDS
TTCCGTTGGTTCTAAATCTA+TGG 0.332083 1_3:-69448853 Msa0137130:CDS
CACTGTGCTCTGGGATTCTA+TGG 0.332419 1_3:-69448146 Msa0137130:CDS
GCGACAAGACAGTGAAAATC+TGG 0.332615 1_3:-69444252 Msa0137130:CDS
AATGCTTTGTGGTTGATAAC+AGG 0.332640 1_3:+69448262 None:intergenic
TGGCGACAAAGATACCTTTC+CGG 0.344773 1_3:+69448731 None:intergenic
GTAGAGGCATGACATATAAA+AGG 0.354208 1_3:+69443998 None:intergenic
TGTATACACAGCAAAAGAAT+TGG 0.356030 1_3:-69449327 Msa0137130:intron
ACATGAGGATTGGGTATATT+CGG 0.356150 1_3:-69448327 Msa0137130:CDS
GAAGAAGAAGAAAGAGAATT+GGG 0.356740 1_3:+69449932 None:intergenic
GGCTTTGGCAGGTTGGTTCA+TGG 0.357324 1_3:-69445080 Msa0137130:CDS
ATTCCATCATTTCTTCGATT+GGG 0.357838 1_3:+69444139 None:intergenic
GCTGTCACACTACTCGTAAA+TGG 0.364831 1_3:+69444181 None:intergenic
TGGCAGCCTGAAAAGACTTC+TGG 0.377252 1_3:-69448206 Msa0137130:CDS
CCTGAATCACATAAACTCTA+TGG 0.383126 1_3:-69445495 Msa0137130:CDS
GTGAACCTGTTGCAAATTCA+TGG 0.386968 1_3:+69444275 None:intergenic
GCTTGTTGCTTCTTCATGTA+AGG 0.391628 1_3:-69445427 Msa0137130:intron
CGGGCGACGGCGATGATGGT+TGG 0.393178 1_3:+69449903 None:intergenic
CTACTGCTGTGGCAGAAGTA+TGG 0.394606 1_3:-69445101 Msa0137130:CDS
TATGACAGTTGTTCATAGTA+AGG 0.395282 1_3:-69447037 Msa0137130:CDS
CTAAAATTGAATCTCCATTT+GGG 0.396876 1_3:+69448111 None:intergenic
AAGAAGGAGTTGAAGTGAAA+AGG 0.398466 1_3:-69449834 Msa0137130:CDS
CGAACTAAGCCACTGTGCTC+TGG 0.400762 1_3:-69448156 Msa0137130:CDS
TTCTGCCACAGCAGTAGATT+GGG 0.401219 1_3:+69445107 None:intergenic
AATAGTGAATAACGTCTCTT+GGG 0.401715 1_3:-69449785 Msa0137130:CDS
GGGCGACGGCGATGATGGTT+GGG 0.402419 1_3:+69449904 None:intergenic
TACATTCATGTGAGCTAAAA+GGG 0.406622 1_3:-69448604 Msa0137130:CDS
AATTCCATCATTTCTTCGAT+TGG 0.407892 1_3:+69444138 None:intergenic
ACCTCCAATTGAAGATCAAC+TGG 0.411643 1_3:-69445535 Msa0137130:CDS
TCTGATACAAATGGGGTTGA+TGG 0.415325 1_3:-69445609 Msa0137130:CDS
CTTCTGCCACAGCAGTAGAT+TGG 0.418879 1_3:+69445106 None:intergenic
ATTGCGCGGCCTCAGGTTCA+TGG 0.422152 1_3:-69447075 Msa0137130:CDS
TGGGATTCTATGGTGGTCAT+TGG 0.423535 1_3:-69448136 Msa0137130:CDS
TTATAGTCTTCTTGCGAGGC+AGG 0.424206 1_3:-69444344 Msa0137130:CDS
AGAAGGAGTTGAAGTGAAAA+GGG 0.425565 1_3:-69449833 Msa0137130:CDS
TCTTTATGCTGTGATCATAA+GGG 0.426565 1_3:-69445453 Msa0137130:CDS
TTATCGATGGCGGAATTGCC+TGG 0.427069 1_3:-69448825 Msa0137130:CDS
GTTAGCATACCTATACCTAT+AGG 0.427291 1_3:+69443805 None:intergenic
GAAGAGCCAGCCACAAGGAC+AGG 0.427978 1_3:+69448386 None:intergenic
TCATTACCTGTAAGCATCAA+TGG 0.428341 1_3:-69448551 Msa0137130:CDS
TGGGAACTGTCCCTTGTTGA+TGG 0.428999 1_3:-69449257 Msa0137130:CDS
TACCACAATCCCACAAGAAA+GGG 0.429846 1_3:-69449114 Msa0137130:CDS
GTATGAGATTGCGCGGCCTC+AGG 0.431270 1_3:-69447082 Msa0137130:CDS
AGCTAAAAGGGCATACAGAT+TGG 0.432748 1_3:-69448592 Msa0137130:CDS
GAATAGTGAATAACGTCTCT+TGG 0.433980 1_3:-69449786 Msa0137130:CDS
TACAAATGGGGTTGATGGTC+TGG 0.434125 1_3:-69445604 Msa0137130:CDS
GAAGTATGGCTTTGGCAGGT+TGG 0.434435 1_3:-69445087 Msa0137130:CDS
AAGGACAGGACCTTCTATAT+AGG 0.435333 1_3:+69448400 None:intergenic
AACTGGCATGGCACACACTT+TGG 0.435584 1_3:-69445518 Msa0137130:CDS
TTTGATTGGACATGAGGATT+GGG 0.435859 1_3:-69448336 Msa0137130:CDS
CATGAGACCTCTGATACAAA+TGG 0.436275 1_3:-69445618 Msa0137130:CDS
CTGTATATGCCATTCCCGTT+TGG 0.438205 1_3:+69448446 None:intergenic
GAAGGTCCTGTCCTTGTGGC+TGG 0.439711 1_3:-69448392 Msa0137130:CDS
GAAGTGAAAAGGGTATTCAT+TGG 0.440981 1_3:-69449823 Msa0137130:CDS
AGGGACACAAGCGGATTATC+TGG 0.442277 1_3:-69444321 Msa0137130:CDS
ATGAGACCTCTGATACAAAT+GGG 0.444909 1_3:-69445617 Msa0137130:CDS
CACGGCCATGAATTTGCAAC+AGG 0.445611 1_3:-69444280 Msa0137130:CDS
AGATGGTACTGTTTGTATAT+GGG 0.448027 1_3:-69449029 Msa0137130:CDS
AAAGGGGTTACATGTATTGA+TGG 0.450575 1_3:-69449097 Msa0137130:CDS
CAAACGGGAATGGCATATAC+AGG 0.452267 1_3:-69448445 Msa0137130:CDS
ACATGTAACCCCTTTCTTGT+GGG 0.452970 1_3:+69449105 None:intergenic
CGTCCTTGCAATGGGAGGAT+TGG 0.455070 1_3:-69448787 Msa0137130:CDS
AACACAGTTGGAACTGCGTC+GGG 0.458249 1_3:+69445564 None:intergenic
ATTGGGTATATTCGGTTGAA+TGG 0.458591 1_3:-69448319 Msa0137130:CDS
GGTGGTCATTGGAGCCCAAA+TGG 0.468423 1_3:-69448125 Msa0137130:CDS
GGTGCAAATATGTCAGCTCT+TGG 0.475040 1_3:-69446871 Msa0137130:CDS
GTGTTTACAATCACAACAAC+AGG 0.476242 1_3:-69444952 Msa0137130:intron
ATTGGGTCAGTCAGTGTTAG+TGG 0.477302 1_3:+69449949 None:intergenic
CTCCCCAATCGAAGAAATGA+TGG 0.478352 1_3:-69444142 Msa0137130:CDS
TACGTAGCTCCGTGCCAAAC+GGG 0.479132 1_3:-69448460 Msa0137130:CDS
AGGCAATTCCGCCATCGATA+AGG 0.479680 1_3:+69448827 None:intergenic
TGACAACTGGCTTACACAAA+AGG 0.480622 1_3:-69448042 Msa0137130:CDS
CATGCCAGTTGATCTTCAAT+TGG 0.481967 1_3:+69445531 None:intergenic
GATATAGCATGGGCTAGATC+TGG 0.482923 1_3:-69447990 Msa0137130:CDS
TGGACAAGACTATGATGATC+TGG 0.487149 1_3:-69448226 Msa0137130:CDS
GTACCACAATCCCACAAGAA+AGG 0.487530 1_3:-69449115 Msa0137130:CDS
CTTCCGTGGATGCAACCAAA+GGG 0.488239 1_3:+69448291 None:intergenic
AGAGAAACCTCGACTTTCCA+TGG 0.491446 1_3:+69447123 None:intergenic
AATTATGGTTTCTCAAACTG+AGG 0.493661 1_3:-69449074 Msa0137130:CDS
GGATGGAAGCATTGTAGTAC+CGG 0.495177 1_3:-69444053 Msa0137130:CDS
ACAAGATTCACCTTTACTGC+GGG 0.496063 1_3:-69448761 Msa0137130:CDS
CTGTGTCACTGTTAAGCTAT+GGG 0.496668 1_3:+69445035 None:intergenic
CAACTAGAATTTATGCTCCA+TGG 0.497145 1_3:-69447140 Msa0137130:CDS
TGATGAAGATTTCTTCTCTA+CGG 0.497228 1_3:+69444228 None:intergenic
TTACGTAGCTCCGTGCCAAA+CGG 0.497618 1_3:-69448461 Msa0137130:CDS
ACCCCTTTCTTGTGGGATTG+TGG 0.499253 1_3:+69449112 None:intergenic
CTAGCTGTTGGAATGGAAAA+CGG 0.499403 1_3:-69444115 Msa0137130:CDS
GTAGTGTGACAGCATTGTCT+TGG 0.501252 1_3:-69444171 Msa0137130:CDS
AGCTTATCATCCTATATAGA+AGG 0.501427 1_3:-69448410 Msa0137130:CDS
TGATTGTAAACACAGAGAAC+TGG 0.501451 1_3:+69444962 None:intergenic
CTGTCATACAATTTATATCA+TGG 0.501729 1_3:+69447052 None:intergenic
TCTGTGTCACTGTTAAGCTA+TGG 0.504079 1_3:+69445034 None:intergenic
CTCTTCAAGATGGAGAGTCT+TGG 0.504927 1_3:-69447104 Msa0137130:CDS
TACATGTAACCCCTTTCTTG+TGG 0.505650 1_3:+69449104 None:intergenic
GGTCAAATCGTCCTTGCAAT+GGG 0.506094 1_3:-69448795 Msa0137130:CDS
GCCAGTTGATCTTCAATTGG+AGG 0.508620 1_3:+69445534 None:intergenic
AAGACTATAACTAATTTCAC+TGG 0.509024 1_3:+69444357 None:intergenic
GTCGAGGTTTCTCTTCAAGA+TGG 0.509924 1_3:-69447114 Msa0137130:CDS
AAAATGTTGGTGATGACAAC+TGG 0.510399 1_3:-69448055 Msa0137130:CDS
CTGTGGCAGAAGTATGGCTT+TGG 0.512071 1_3:-69445095 Msa0137130:CDS
ACAATAATGCATATCGAAGA+AGG 0.513169 1_3:-69449850 Msa0137130:exon
TGACTGTAAATTATCATGCC+TGG 0.515474 1_3:-69448883 Msa0137130:CDS
AATGATGGAATTCTAGCTGT+TGG 0.518192 1_3:-69444127 Msa0137130:CDS
GGCAGAAGTATGGCTTTGGC+AGG 0.518853 1_3:-69445091 Msa0137130:CDS
TAGTGTGACAGCATTGTCTT+GGG 0.519272 1_3:-69444170 Msa0137130:CDS
TTTGCATCTACTTCTTCAGA+TGG 0.519491 1_3:-69449046 Msa0137130:CDS
GAACTAAGCCACTGTGCTCT+GGG 0.520247 1_3:-69448155 Msa0137130:CDS
AGCTCCGTGCCAAACGGGAA+TGG 0.521165 1_3:-69448455 Msa0137130:CDS
CCTTTGGTTGCATCCACGGA+AGG 0.522914 1_3:-69448290 Msa0137130:CDS
ATGACAGTTGTTCATAGTAA+GGG 0.523352 1_3:-69447036 Msa0137130:CDS
ATAACAGGCTTCCCCTTCCG+TGG 0.525346 1_3:+69448277 None:intergenic
TTCCATCATTTCTTCGATTG+GGG 0.526646 1_3:+69444140 None:intergenic
GGCGCGAGTGATTTGTGCTG+TGG 0.528350 1_3:-69450002 None:intergenic
AGTCTACAACTTGCTTCTTG+TGG 0.530154 1_3:-69443932 Msa0137130:CDS
AAAATCTCGCTGCCCTCTGT+CGG 0.531156 1_3:-69449880 Msa0137130:five_prime_UTR
TTGCTATCTGGAGATGCTGA+TGG 0.531360 1_3:-69449293 Msa0137130:CDS
TGGTCAAATCGTCCTTGCAA+TGG 0.532210 1_3:-69448796 Msa0137130:CDS
AAGGGCATACAGATTGGATC+CGG 0.534028 1_3:-69448586 Msa0137130:CDS
TGCCTCTACAGTAAACCGTC+TGG 0.535874 1_3:-69443984 Msa0137130:CDS
TTTGGTTGCATCCACGGAAG+GGG 0.535971 1_3:-69448288 Msa0137130:CDS
AAAAGGGTATTCATTGGAGC+AGG 0.536530 1_3:-69449817 Msa0137130:CDS
TCACATAAACTCTATGGCCA+TGG 0.537110 1_3:-69445489 Msa0137130:CDS
GTGACAGCATTGTCTTGGGT+TGG 0.548956 1_3:-69444166 Msa0137130:CDS
GGAGGTTCAGTAAACACAGT+TGG 0.549347 1_3:+69445552 None:intergenic
GATGCAGATAAAATGCTTTG+TGG 0.550954 1_3:+69448251 None:intergenic
CTACAGTAAACCGTCTGGCA+TGG 0.553191 1_3:-69443979 Msa0137130:CDS
CTTTGGTTGCATCCACGGAA+GGG 0.553868 1_3:-69448289 Msa0137130:CDS
AGAAGAGCAGCGGCGAAACC+CGG 0.555080 1_3:+69444034 None:intergenic
CATCAGCTCCGCCAACAAAA+CGG 0.556187 1_3:+69447007 None:intergenic
CCTTCCGTGGATGCAACCAA+AGG 0.557493 1_3:+69448290 None:intergenic
CATCGGTGACTGATATAGCA+TGG 0.557572 1_3:-69448001 Msa0137130:CDS
ATGCATACGAATTTGGAAGA+TGG 0.561651 1_3:-69448486 Msa0137130:CDS
AAGAAAATAGCTCATTTCCA+TGG 0.561954 1_3:+69445472 None:intergenic
AACAGCTTTGTGACCAGGAA+GGG 0.562234 1_3:+69449612 None:intergenic
TATCCAATCCTCCCATTGCA+AGG 0.562834 1_3:+69448784 None:intergenic
TGATGGTGCTATTATTCTAT+GGG 0.564507 1_3:-69449276 Msa0137130:CDS
GGGAACTGTCCCTTGTTGAT+GGG 0.565491 1_3:-69449256 Msa0137130:CDS
GTTGGTTCATGGAAAGCAGT+TGG 0.566583 1_3:-69445069 Msa0137130:CDS
TATGCCATTCCCGTTTGGCA+CGG 0.567694 1_3:+69448451 None:intergenic
TGCCAGACGGTTTACTGTAG+AGG 0.573011 1_3:+69443982 None:intergenic
TATAGAAGGTCCTGTCCTTG+TGG 0.573054 1_3:-69448396 Msa0137130:CDS
CTTACACAAAAGGTTCCCTC+TGG 0.573072 1_3:-69448032 Msa0137130:CDS
TGGAATTCTAGCTGTTGGAA+TGG 0.578033 1_3:-69444122 Msa0137130:CDS
TACCATAGATTTAGAACCAA+CGG 0.580301 1_3:+69448851 None:intergenic
ATCAACCCCATTTGTATCAG+AGG 0.580402 1_3:+69445611 None:intergenic
CGACAAGACAGTGAAAATCT+GGG 0.588108 1_3:-69444251 Msa0137130:CDS
CAACAGCTTTGTGACCAGGA+AGG 0.588771 1_3:+69449611 None:intergenic
AAACACAGTTGGAACTGCGT+CGG 0.588864 1_3:+69445563 None:intergenic
GATCATCATAGTCTTGTCCA+TGG 0.589029 1_3:+69448229 None:intergenic
TAGTCTTCTTGCGAGGCAGG+AGG 0.589362 1_3:-69444341 Msa0137130:CDS
TGCGTCGGGAACAGTTTCAA+AGG 0.592159 1_3:+69445578 None:intergenic
ACTGTCCCTTGTTGATGGGA+AGG 0.592872 1_3:-69449252 Msa0137130:intron
ACGATTTGACCACTACATCC+AGG 0.600975 1_3:+69448807 None:intergenic
TCCTATAACAGACAAGAGGA+TGG 0.602584 1_3:-69444070 Msa0137130:CDS
TATTGTCACAGCTCCGACAG+AGG 0.602681 1_3:+69449867 None:intergenic
TGACAGTTGTTCATAGTAAG+GGG 0.603153 1_3:-69447035 Msa0137130:CDS
TATATCAGCTAGCCATGACC+AGG 0.603806 1_3:-69447958 Msa0137130:intron
TCTGGCATGGAGGAAAATTG+AGG 0.604356 1_3:-69443966 Msa0137130:CDS
TTGGGTCAGTCAGTGTTAGT+GGG 0.604464 1_3:+69449950 None:intergenic
AGTCTTCTTGCGAGGCAGGA+GGG 0.605997 1_3:-69444340 Msa0137130:CDS
ATCGGTGACTGATATAGCAT+GGG 0.610638 1_3:-69448000 Msa0137130:CDS
ACCTGTAAGCATCAATGGAG+AGG 0.613920 1_3:-69448546 Msa0137130:CDS
CGAGGCAGGAGGGACACAAG+CGG 0.615848 1_3:-69444330 Msa0137130:CDS
TAGCTTAACAGTGACACAGA+TGG 0.618590 1_3:-69445031 Msa0137130:CDS
TGGATGAATGTGGTTACTGT+TGG 0.619332 1_3:-69448179 Msa0137130:CDS
GCGGAATTGCCTGGATGTAG+TGG 0.621195 1_3:-69448816 Msa0137130:CDS
AAGAAGAAGAGCCAGCCACA+AGG 0.621956 1_3:+69448381 None:intergenic
AAGATTCACCTTTACTGCGG+GGG 0.621967 1_3:-69448759 Msa0137130:CDS
TTATGCTCCATGGAAAGTCG+AGG 0.623529 1_3:-69447130 Msa0137130:CDS
TCCGTGGATGCAACCAAAGG+GGG 0.625596 1_3:+69448293 None:intergenic
ATTGTCACAGCTCCGACAGA+GGG 0.625814 1_3:+69449868 None:intergenic
AGCTTTGTGACCAGGAAGGG+TGG 0.626948 1_3:+69449615 None:intergenic
GTACTTCCACTGACGAGTAG+TGG 0.627306 1_3:-69449001 Msa0137130:intron
GCAGGCCCAATCTACTGCTG+TGG 0.627705 1_3:-69445112 Msa0137130:intron
CAATTGAAGATCAACTGGCA+TGG 0.629052 1_3:-69445530 Msa0137130:CDS
TTAAGCTATGGGATTGCAAG+CGG 0.629501 1_3:+69445046 None:intergenic
CAAATCGTCCTTGCAATGGG+AGG 0.631304 1_3:-69448792 Msa0137130:CDS
AACAAGATTCACCTTTACTG+CGG 0.631780 1_3:-69448762 Msa0137130:CDS
ATCTATGGTAGCCTTATCGA+TGG 0.631961 1_3:-69448838 Msa0137130:CDS
TGTGCTCTGGGATTCTATGG+TGG 0.635038 1_3:-69448143 Msa0137130:CDS
ATAACAAGACTTCTGCAAAG+TGG 0.637064 1_3:+69446927 None:intergenic
GATGGAAGCATTGTAGTACC+GGG 0.637075 1_3:-69444052 Msa0137130:CDS
GGCTTACCACTACTCGTCAG+TGG 0.637295 1_3:+69448995 None:intergenic
AAAACGGCCAAATAGAGTTG+TGG 0.638326 1_3:-69444099 Msa0137130:CDS
GCGCGAGTGATTTGTGCTGT+GGG 0.639935 1_3:-69450001 None:intergenic
AGTCTTGGTATGAGATTGCG+CGG 0.641165 1_3:-69447089 Msa0137130:CDS
GATGTACCTTCCCATCAACA+AGG 0.642227 1_3:+69449246 None:intergenic
ACCGATGCAAAATGACCAGA+GGG 0.642490 1_3:+69448017 None:intergenic
GTTGCAAATTCATGGCCGTG+TGG 0.643567 1_3:+69444283 None:intergenic
CTGAAAAGACTTCTGGTGTG+TGG 0.643767 1_3:-69448199 Msa0137130:CDS
TCATGTTCTTGGAACCCACA+CGG 0.651148 1_3:-69444298 Msa0137130:CDS
ACCACAATCCCACAAGAAAG+GGG 0.653351 1_3:-69449113 Msa0137130:CDS
ATATCATGGCCATGAACCTG+AGG 0.654048 1_3:+69447066 None:intergenic
CTTGGGGTCGAAAATGGCGA+CGG 0.656445 1_3:+69449726 None:intergenic
TTGCAAATTCATGGCCGTGT+GGG 0.657111 1_3:+69444284 None:intergenic
CAGTAAACCGTCTGGCATGG+AGG 0.660516 1_3:-69443976 Msa0137130:CDS
TTCCGTGGATGCAACCAAAG+GGG 0.666647 1_3:+69448292 None:intergenic
TCTGTCCTATAACAGACAAG+AGG 0.667351 1_3:-69444074 Msa0137130:CDS
CACCGATGCAAAATGACCAG+AGG 0.669482 1_3:+69448016 None:intergenic
TACGCGAACAAGAAGAGCAG+CGG 0.669620 1_3:+69444024 None:intergenic
TTAGTTATAGTCTTCTTGCG+AGG 0.676218 1_3:-69444348 Msa0137130:CDS
GTAATGAGAAGTCCAAACTC+CGG 0.676979 1_3:+69448567 None:intergenic
CAAGATTCACCTTTACTGCG+GGG 0.678899 1_3:-69448760 Msa0137130:CDS
AAACGGGAATGGCATATACA+GGG 0.680280 1_3:-69448444 Msa0137130:CDS
TTCTGGTGTGTGGATGAATG+TGG 0.682155 1_3:-69448189 Msa0137130:CDS
TATGGTAGCCTTATCGATGG+CGG 0.688793 1_3:-69448835 Msa0137130:CDS
ATGTACCTTCCCATCAACAA+GGG 0.699218 1_3:+69449247 None:intergenic
GTCACACTACTCGTAAATGG+AGG 0.699933 1_3:+69444184 None:intergenic
ATAGTGAATAACGTCTCTTG+GGG 0.710505 1_3:-69449784 Msa0137130:CDS
TGAGACCTCTGATACAAATG+GGG 0.710699 1_3:-69445616 Msa0137130:CDS
CGGGAATGGCATATACAGGG+AGG 0.738065 1_3:-69448441 Msa0137130:CDS
CATAGAATCCCAGAGCACAG+TGG 0.755507 1_3:+69448147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAATTAAAGATAAA+GGG + chr1_3:69444027-69444046 None:intergenic 10.0%
!!! TATTATGATCATTTTTTTTT+TGG - chr1_3:69448841-69448860 Msa0137130:CDS 10.0%
!! GAAACAAAAATTAAAGATAA+AGG + chr1_3:69444028-69444047 None:intergenic 15.0%
!! AATCATCAATAACATTATTA+GGG + chr1_3:69444345-69444364 None:intergenic 15.0%
!! TAATCATCAATAACATTATT+AGG + chr1_3:69444346-69444365 None:intergenic 15.0%
!! ATGTTAGTAATCTATAATTA+TGG + chr1_3:69445001-69445020 None:intergenic 15.0%
!! TATCTGTTAATTTATCTATT+AGG - chr1_3:69445821-69445840 Msa0137130:intron 15.0%
!! TTTAATTAGTTGTATAAACT+TGG - chr1_3:69446451-69446470 Msa0137130:intron 15.0%
!! AAATACTTGAATAAAACTAT+TGG - chr1_3:69447061-69447080 Msa0137130:CDS 15.0%
!! TAAATAGGATACAATAATAT+AGG - chr1_3:69447209-69447228 Msa0137130:intron 15.0%
!! AAATAGGATACAATAATATA+GGG - chr1_3:69447210-69447229 Msa0137130:intron 15.0%
!! TACAGATATATCAAAAAATA+AGG + chr1_3:69449864-69449883 None:intergenic 15.0%
!!! TAATAATTCATATTTTCAAG+AGG + chr1_3:69449949-69449968 None:intergenic 15.0%
!!! TTCCTTATAGTTTTCTTTTT+GGG - chr1_3:69445031-69445050 Msa0137130:CDS 20.0%
!!! ATGATGTATTTTTAAATACC+TGG + chr1_3:69445772-69445791 None:intergenic 20.0%
!! TAGATGATCTATTAACTTAT+TGG - chr1_3:69446297-69446316 Msa0137130:intron 20.0%
!!! TTTAAAATGCCACATTTTAT+TGG - chr1_3:69446353-69446372 Msa0137130:intron 20.0%
!! TATACAACTAATTAAACCAA+TGG + chr1_3:69446447-69446466 None:intergenic 20.0%
!!! AACGTTTTCAAAAATGATAA+TGG + chr1_3:69446754-69446773 None:intergenic 20.0%
!!! TTTTTTATGTGACAAATAAC+AGG - chr1_3:69446919-69446938 Msa0137130:CDS 20.0%
!! AATAGGATACAATAATATAG+GGG - chr1_3:69447211-69447230 Msa0137130:intron 20.0%
!!! TCTTTTCAATTCAATTTCTT+TGG - chr1_3:69447788-69447807 Msa0137130:intron 20.0%
!! TAACATCAGAAAATAAAACA+CGG + chr1_3:69447975-69447994 None:intergenic 20.0%
!! AAACAATTATATATCTGTTC+TGG - chr1_3:69448009-69448028 Msa0137130:CDS 20.0%
!! AACTAATGTATATCAAATGT+TGG + chr1_3:69448461-69448480 None:intergenic 20.0%
!! ATAAATAATTTATGCATTGC+AGG - chr1_3:69448579-69448598 Msa0137130:CDS 20.0%
!!! TTTTTTTTGGTGATTTTCTT+TGG - chr1_3:69448854-69448873 Msa0137130:CDS 20.0%
!! AAATACTAATCACTTAATTG+TGG - chr1_3:69449319-69449338 Msa0137130:CDS 20.0%
!!! GAATATTTTTTTACTCCTAT+AGG - chr1_3:69449889-69449908 Msa0137130:five_prime_UTR 20.0%
!!! TGAAGTATTTTTTGCTAAAT+AGG - chr1_3:69449983-69450002 Msa0137130:five_prime_UTR 20.0%
!!! TGAATAGAAATTTGCTACTA+GGG + chr1_3:69444143-69444162 None:intergenic 25.0%
!!! TTGAATAGAAATTTGCTACT+AGG + chr1_3:69444144-69444163 None:intergenic 25.0%
! AGTAGCAAATTTCTATTCAA+AGG - chr1_3:69444144-69444163 Msa0137130:CDS 25.0%
! ATCATAGTGAGTATAGAATT+TGG - chr1_3:69444211-69444230 Msa0137130:CDS 25.0%
!! ACTTGATAGCTTTCATTTAA+TGG - chr1_3:69444520-69444539 Msa0137130:intron 25.0%
!!! TCTATTTTTTGCGTTTATAG+TGG - chr1_3:69444556-69444575 Msa0137130:intron 25.0%
!! TACATGTATTGATGGAATTA+TGG - chr1_3:69444620-69444639 Msa0137130:intron 25.0%
! ATAACAGTAAACATTGTCAT+TGG + chr1_3:69444748-69444767 None:intergenic 25.0%
!! GTTCCTTATAGTTTTCTTTT+TGG - chr1_3:69445030-69445049 Msa0137130:CDS 25.0%
!! AGAGGTAAACAATATTTTTC+TGG - chr1_3:69445181-69445200 Msa0137130:intron 25.0%
! CTAAAATTGAATCTCCATTT+GGG + chr1_3:69445601-69445620 None:intergenic 25.0%
!!! TATTTTTAAATACCTGGTCA+TGG + chr1_3:69445766-69445785 None:intergenic 25.0%
!! AATCTATAGTAAAGCTTTTG+TGG + chr1_3:69445800-69445819 None:intergenic 25.0%
!! AGACATTTTCGAACTATAAA+AGG + chr1_3:69445868-69445887 None:intergenic 25.0%
!! GTGGCATTTTAAACATTTTT+AGG + chr1_3:69446346-69446365 None:intergenic 25.0%
! TTGTCATTACCAATAAAATG+TGG + chr1_3:69446365-69446384 None:intergenic 25.0%
! CTGTCATACAATTTATATCA+TGG + chr1_3:69446660-69446679 None:intergenic 25.0%
! TCAACAAATTAACTAACCTT+GGG + chr1_3:69446887-69446906 None:intergenic 25.0%
! TTCAACAAATTAACTAACCT+TGG + chr1_3:69446888-69446907 None:intergenic 25.0%
! ACTTGAATAAAACTATTGGT+TGG - chr1_3:69447065-69447084 Msa0137130:CDS 25.0%
! TAGTAAATAGTTACAGCTTA+TGG - chr1_3:69447102-69447121 Msa0137130:CDS 25.0%
! TAAAGGTGAATTAGTAGTTA+AGG - chr1_3:69447153-69447172 Msa0137130:intron 25.0%
! TAGGAATATTGTGTGTAAAT+AGG - chr1_3:69447194-69447213 Msa0137130:intron 25.0%
!! TATTTCACATAGCGTATTTT+TGG - chr1_3:69447682-69447701 Msa0137130:intron 25.0%
!! ACTTTTTATTAACAGCTGTT+AGG + chr1_3:69447816-69447835 None:intergenic 25.0%
! AATAAAAAGTTACGAGAGTT+AGG - chr1_3:69447826-69447845 Msa0137130:intron 25.0%
! AACATCAGAAAATAAAACAC+GGG + chr1_3:69447974-69447993 None:intergenic 25.0%
! ATCCTCAAATTTACAAACTT+TGG + chr1_3:69448048-69448067 None:intergenic 25.0%
! ATCTTTCTGTCAAATTATAC+AGG + chr1_3:69448333-69448352 None:intergenic 25.0%
!! TCTTACAATTTTCTTGACTA+TGG - chr1_3:69448378-69448397 Msa0137130:CDS 25.0%
!!! GAAAAAAGAGCATTAGAAAT+TGG + chr1_3:69448439-69448458 None:intergenic 25.0%
!! GCTGATATTTCTACATTATT+TGG - chr1_3:69448546-69448565 Msa0137130:CDS 25.0%
! TCATAATAGTAATGCAGAAA+AGG + chr1_3:69448829-69448848 None:intergenic 25.0%
!! ATTAAGTTGTTCATTCAAAC+AGG - chr1_3:69449221-69449240 Msa0137130:intron 25.0%
!! TTAAGTTGTTCATTCAAACA+GGG - chr1_3:69449222-69449241 Msa0137130:intron 25.0%
! AAGACTATAACTAATTTCAC+TGG + chr1_3:69449355-69449374 None:intergenic 25.0%
!!! TTTTTTACTCCTATAGGTAT+AGG - chr1_3:69449895-69449914 Msa0137130:five_prime_UTR 25.0%
! TTAGCAAAAAATACTTCATG+TGG + chr1_3:69449981-69450000 None:intergenic 25.0%
GAAGAAGAAGAAAGAGAATT+GGG + chr1_3:69443780-69443799 None:intergenic 30.0%
AGAAGAAGAAGAAAGAGAAT+TGG + chr1_3:69443781-69443800 None:intergenic 30.0%
ACAATAATGCATATCGAAGA+AGG - chr1_3:69443859-69443878 Msa0137130:three_prime_UTR 30.0%
AATAGTGAATAACGTCTCTT+GGG - chr1_3:69443924-69443943 Msa0137130:CDS 30.0%
GTACACTATATAAGTGCTTA+TGG - chr1_3:69444166-69444185 Msa0137130:CDS 30.0%
AGATTGTTTGAGAGAGTTTA+TGG + chr1_3:69444272-69444291 None:intergenic 30.0%
TGTGTATACAAAGTAAGAGA+GGG + chr1_3:69444372-69444391 None:intergenic 30.0%
TGTATACACAGCAAAAGAAT+TGG - chr1_3:69444382-69444401 Msa0137130:intron 30.0%
!! TGATGGTGCTATTATTCTAT+GGG - chr1_3:69444433-69444452 Msa0137130:intron 30.0%
!!! ATTTTTTGCGTTTATAGTGG+AGG - chr1_3:69444559-69444578 Msa0137130:intron 30.0%
AATTATGGTTTCTCAAACTG+AGG - chr1_3:69444635-69444654 Msa0137130:intron 30.0%
AGATGGTACTGTTTGTATAT+GGG - chr1_3:69444680-69444699 Msa0137130:intron 30.0%
ACATTGTCATTGGAAAAGTA+GGG + chr1_3:69444738-69444757 None:intergenic 30.0%
AACATTGTCATTGGAAAAGT+AGG + chr1_3:69444739-69444758 None:intergenic 30.0%
GATATTTAGTCCATCATTCT+AGG - chr1_3:69444803-69444822 Msa0137130:intron 30.0%
! TACCATAGATTTAGAACCAA+CGG + chr1_3:69444861-69444880 None:intergenic 30.0%
CTCCCAAAAAGAAAACTATA+AGG + chr1_3:69445036-69445055 None:intergenic 30.0%
TACATTCATGTGAGCTAAAA+GGG - chr1_3:69445105-69445124 Msa0137130:CDS 30.0%
AAGACAAATGCATACGAATT+TGG - chr1_3:69445216-69445235 Msa0137130:intron 30.0%
AGCTTATCATCCTATATAGA+AGG - chr1_3:69445299-69445318 Msa0137130:intron 30.0%
! TCCTTAGAATCTCTTTTGAT+TGG - chr1_3:69445359-69445378 Msa0137130:intron 30.0%
TCCAATCAAAAGAGATTCTA+AGG + chr1_3:69445363-69445382 None:intergenic 30.0%
GCTAAAATTGAATCTCCATT+TGG + chr1_3:69445602-69445621 None:intergenic 30.0%
!! TCAATTTTAGCACATGGATA+TGG - chr1_3:69445611-69445630 Msa0137130:CDS 30.0%
! TTCCATCTTTGGAAAAATGT+TGG - chr1_3:69445641-69445660 Msa0137130:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - chr1_3:69445952-69445971 Msa0137130:intron 30.0%
TCTCGAGTATGTATCTATTT+CGG - chr1_3:69445981-69446000 Msa0137130:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - chr1_3:69445952-69445971 Msa0137130:intron 30.0%
! TCTCGAGTATGTATCTATTT+TGG - chr1_3:69445981-69446000 Msa0137130:intron 30.0%
AGATTCATCATTATGAATCC+GGG + chr1_3:69446130-69446149 None:intergenic 30.0%
GAGATTCATCATTATGAATC+CGG + chr1_3:69446131-69446150 None:intergenic 30.0%
AGTGATTCATTAGAGTGAAT+CGG + chr1_3:69446170-69446189 None:intergenic 30.0%
TACAGAGTTGACAAAAAAAG+TGG + chr1_3:69446215-69446234 None:intergenic 30.0%
GCGTAGATAAACAAAAAAAG+CGG + chr1_3:69446245-69446264 None:intergenic 30.0%
AATCTCGATTTAACAACCAT+TGG - chr1_3:69446428-69446447 Msa0137130:intron 30.0%
GACAAATTCAAGATAACAAG+TGG + chr1_3:69446510-69446529 None:intergenic 30.0%
TATGACAGTTGTTCATAGTA+AGG - chr1_3:69446672-69446691 Msa0137130:intron 30.0%
ATGACAGTTGTTCATAGTAA+GGG - chr1_3:69446673-69446692 Msa0137130:intron 30.0%
! TTGACAAACATCCAGATTTT+GGG - chr1_3:69446817-69446836 Msa0137130:intron 30.0%
GAGATCACATTGTTTAATGT+TGG - chr1_3:69446950-69446969 Msa0137130:CDS 30.0%
TAGTAGTTAAGGTTAGTAGT+TGG - chr1_3:69447164-69447183 Msa0137130:intron 30.0%
CACACTGATATGTAAATACT+TGG - chr1_3:69447237-69447256 Msa0137130:intron 30.0%
!! CTCTTTATTTCTGCTATTGA+CGG + chr1_3:69447463-69447482 None:intergenic 30.0%
! ACATGATCTATTTTCACCAT+AGG - chr1_3:69447521-69447540 Msa0137130:intron 30.0%
ATTGGAAGCTTTACGTATTA+TGG + chr1_3:69447588-69447607 None:intergenic 30.0%
!! GAGCATCGGTAATAATATAT+TGG + chr1_3:69447606-69447625 None:intergenic 30.0%
GAAATAAGTCAAAAAGGGAA+TGG + chr1_3:69447634-69447653 None:intergenic 30.0%
GGGTTGAAATAAGTCAAAAA+GGG + chr1_3:69447639-69447658 None:intergenic 30.0%
AGGGTTGAAATAAGTCAAAA+AGG + chr1_3:69447640-69447659 None:intergenic 30.0%
AACAAAACCATAGTCATAGA+AGG - chr1_3:69447933-69447952 Msa0137130:intron 30.0%
ACAAAACCATAGTCATAGAA+GGG - chr1_3:69447934-69447953 Msa0137130:intron 30.0%
ATATATCTGTTCTGGTGTAT+TGG - chr1_3:69448017-69448036 Msa0137130:CDS 30.0%
CTCCAAAGTTTGTAAATTTG+AGG - chr1_3:69448043-69448062 Msa0137130:CDS 30.0%
AAGAAAATAGCTCATTTCCA+TGG + chr1_3:69448240-69448259 None:intergenic 30.0%
TTCTTTATGCTGTGATCATA+AGG - chr1_3:69448255-69448274 Msa0137130:CDS 30.0%
TCTTTATGCTGTGATCATAA+GGG - chr1_3:69448256-69448275 Msa0137130:CDS 30.0%
! TACATTAGTTTCAACCAACT+TGG - chr1_3:69448471-69448490 Msa0137130:CDS 30.0%
TATGGAACTGAATTGAACAT+TGG - chr1_3:69448910-69448929 Msa0137130:intron 30.0%
AATCATTTATACTCTCAGTC+AGG + chr1_3:69448961-69448980 None:intergenic 30.0%
! ATCACTTAATTGTGGTTTGT+AGG - chr1_3:69449327-69449346 Msa0137130:intron 30.0%
TGATGAAGATTTCTTCTCTA+CGG + chr1_3:69449484-69449503 None:intergenic 30.0%
ATTCCATCATTTCTTCGATT+GGG + chr1_3:69449573-69449592 None:intergenic 30.0%
AATTCCATCATTTCTTCGAT+TGG + chr1_3:69449574-69449593 None:intergenic 30.0%
!! ATTTTCAAGAGGAACAGAAA+CGG + chr1_3:69449938-69449957 None:intergenic 30.0%
AAGAAGGAGTTGAAGTGAAA+AGG - chr1_3:69443875-69443894 Msa0137130:exon 35.0%
AGAAGGAGTTGAAGTGAAAA+GGG - chr1_3:69443876-69443895 Msa0137130:exon 35.0%
!! GAAGTGAAAAGGGTATTCAT+TGG - chr1_3:69443886-69443905 Msa0137130:exon 35.0%
GAATAGTGAATAACGTCTCT+TGG - chr1_3:69443923-69443942 Msa0137130:CDS 35.0%
ATAGTGAATAACGTCTCTTG+GGG - chr1_3:69443925-69443944 Msa0137130:CDS 35.0%
!!! GCTTCTGGTTTTGTTTCTTT+TGG - chr1_3:69443949-69443968 Msa0137130:CDS 35.0%
AGTGAAAAAGAGTAACCTTG+GGG + chr1_3:69444002-69444021 None:intergenic 35.0%
GAGTGAAAAAGAGTAACCTT+GGG + chr1_3:69444003-69444022 None:intergenic 35.0%
TGAGTGAAAAAGAGTAACCT+TGG + chr1_3:69444004-69444023 None:intergenic 35.0%
CTGTGTATACAAAGTAAGAG+AGG + chr1_3:69444373-69444392 None:intergenic 35.0%
!! GAACTGCATTATTTGCTATC+TGG - chr1_3:69444404-69444423 Msa0137130:intron 35.0%
!! CTGATGGTGCTATTATTCTA+TGG - chr1_3:69444432-69444451 Msa0137130:intron 35.0%
AAAGGGGTTACATGTATTGA+TGG - chr1_3:69444612-69444631 Msa0137130:intron 35.0%
TTTGCATCTACTTCTTCAGA+TGG - chr1_3:69444663-69444682 Msa0137130:intron 35.0%
CAGATGGTACTGTTTGTATA+TGG - chr1_3:69444679-69444698 Msa0137130:intron 35.0%
TTTACAGTCACCTAGAATGA+TGG + chr1_3:69444816-69444835 None:intergenic 35.0%
TGACTGTAAATTATCATGCC+TGG - chr1_3:69444826-69444845 Msa0137130:intron 35.0%
!! TTCCGTTGGTTCTAAATCTA+TGG - chr1_3:69444856-69444875 Msa0137130:intron 35.0%
AACAAGATTCACCTTTACTG+CGG - chr1_3:69444947-69444966 Msa0137130:intron 35.0%
! ATGGGCAGAAGAAAAAGTAT+AGG + chr1_3:69445073-69445092 None:intergenic 35.0%
AATGTACAAACTGGGTTCAT+GGG + chr1_3:69445091-69445110 None:intergenic 35.0%
CTCACATGAATGTACAAACT+GGG + chr1_3:69445099-69445118 None:intergenic 35.0%
GTACATTCATGTGAGCTAAA+AGG - chr1_3:69445104-69445123 Msa0137130:CDS 35.0%
TCATTACCTGTAAGCATCAA+TGG - chr1_3:69445158-69445177 Msa0137130:intron 35.0%
ATGCATACGAATTTGGAAGA+TGG - chr1_3:69445223-69445242 Msa0137130:intron 35.0%
!! ATCTCTTTTGATTGGACATG+AGG - chr1_3:69445367-69445386 Msa0137130:intron 35.0%
!! TTTTGATTGGACATGAGGAT+TGG - chr1_3:69445372-69445391 Msa0137130:intron 35.0%
TTTGATTGGACATGAGGATT+GGG - chr1_3:69445373-69445392 Msa0137130:intron 35.0%
ACATGAGGATTGGGTATATT+CGG - chr1_3:69445382-69445401 Msa0137130:intron 35.0%
ATTGGGTATATTCGGTTGAA+TGG - chr1_3:69445390-69445409 Msa0137130:intron 35.0%
!! AATGCTTTGTGGTTGATAAC+AGG + chr1_3:69445450-69445469 None:intergenic 35.0%
GATGCAGATAAAATGCTTTG+TGG + chr1_3:69445461-69445480 None:intergenic 35.0%
! AAGCATTTTATCTGCATCCA+TGG - chr1_3:69445463-69445482 Msa0137130:CDS 35.0%
!! GGAGATTCAATTTTAGCACA+TGG - chr1_3:69445605-69445624 Msa0137130:CDS 35.0%
!! ATTTTAGCACATGGATATGG+TGG - chr1_3:69445614-69445633 Msa0137130:CDS 35.0%
! CACCAACATTTTTCCAAAGA+TGG + chr1_3:69445646-69445665 None:intergenic 35.0%
!! AAAATGTTGGTGATGACAAC+TGG - chr1_3:69445654-69445673 Msa0137130:intron 35.0%
CAGTGAGTTAGACAACATAT+AGG + chr1_3:69445892-69445911 None:intergenic 35.0%
TACTCGAGATTTGTACCAAT+TGG + chr1_3:69445970-69445989 None:intergenic 35.0%
AGATTCATCATGATGAATCC+GGG + chr1_3:69446028-69446047 None:intergenic 35.0%
GAGATTCATCATGATGAATC+CGG + chr1_3:69446029-69446048 None:intergenic 35.0%
TACTCGAGATTAGTACCAAT+TGG + chr1_3:69446072-69446091 None:intergenic 35.0%
GATTCATCATTATGAATCCG+GGG + chr1_3:69446129-69446148 None:intergenic 35.0%
TGATTCATTAGAGTGAATCG+GGG + chr1_3:69446168-69446187 None:intergenic 35.0%
GTGATTCATTAGAGTGAATC+GGG + chr1_3:69446169-69446188 None:intergenic 35.0%
AGATAAACAAAAAAAGCGGC+TGG + chr1_3:69446241-69446260 None:intergenic 35.0%
!! AGTTGTCTGCAATTTTGACA+CGG + chr1_3:69446554-69446573 None:intergenic 35.0%
CAACTAGAATTTATGCTCCA+TGG - chr1_3:69446569-69446588 Msa0137130:intron 35.0%
TGACAGTTGTTCATAGTAAG+GGG - chr1_3:69446674-69446693 Msa0137130:intron 35.0%
ATAACAAGACTTCTGCAAAG+TGG + chr1_3:69446785-69446804 None:intergenic 35.0%
! CTTGACAAACATCCAGATTT+TGG - chr1_3:69446816-69446835 Msa0137130:intron 35.0%
ACATATTTGCACCCAAAATC+TGG + chr1_3:69446831-69446850 None:intergenic 35.0%
CAAAAACCTATTTATGCCCA+AGG - chr1_3:69446868-69446887 Msa0137130:CDS 35.0%
AACTAACCTTGGGCATAAAT+AGG + chr1_3:69446877-69446896 None:intergenic 35.0%
TCTTTCTCATTGTTATCTGC+TGG - chr1_3:69446976-69446995 Msa0137130:CDS 35.0%
AACTTTGACTGCAAAGGATT+TGG - chr1_3:69447003-69447022 Msa0137130:CDS 35.0%
CATGTTGCTATGCAGAATAA+AGG - chr1_3:69447136-69447155 Msa0137130:CDS 35.0%
AGTTAAGGTTAGTAGTTGGT+TGG - chr1_3:69447168-69447187 Msa0137130:intron 35.0%
! GTTAGTAGTTGGTTGGTTAT+AGG - chr1_3:69447175-69447194 Msa0137130:intron 35.0%
! ATACTTGGTGAATAGACCAT+TGG - chr1_3:69447252-69447271 Msa0137130:intron 35.0%
TTGTCAATTAGTGGCAATAG+TGG - chr1_3:69447307-69447326 Msa0137130:intron 35.0%
! CTCTTCACTTTAGTTTCCTA+TGG + chr1_3:69447540-69447559 None:intergenic 35.0%
AGGAAACTAAAGTGAAGAGT+TGG - chr1_3:69447541-69447560 Msa0137130:intron 35.0%
! CTATTGATAACATTGCTCGT+AGG - chr1_3:69447729-69447748 Msa0137130:intron 35.0%
TGCATCTCATATTGAGGATA+TGG - chr1_3:69447875-69447894 Msa0137130:intron 35.0%
GCATCTCATATTGAGGATAT+GGG - chr1_3:69447876-69447895 Msa0137130:intron 35.0%
ATGAGACCTCTGATACAAAT+GGG - chr1_3:69448092-69448111 Msa0137130:CDS 35.0%
CCATAGAGTTTATGTGATTC+AGG + chr1_3:69448217-69448236 None:intergenic 35.0%
CCTGAATCACATAAACTCTA+TGG - chr1_3:69448214-69448233 Msa0137130:CDS 35.0%
TAGAGCAGTAAAGTGTACAA+CGG + chr1_3:69448524-69448543 None:intergenic 35.0%
TGATTGTAAACACAGAGAAC+TGG + chr1_3:69448750-69448769 None:intergenic 35.0%
GTGTTTACAATCACAACAAC+AGG - chr1_3:69448757-69448776 Msa0137130:CDS 35.0%
! TGGTTGACATTTGTTGAGTT+TGG - chr1_3:69448874-69448893 Msa0137130:CDS 35.0%
! TAAGCGCTTGTGATTTTGTT+CGG - chr1_3:69449016-69449035 Msa0137130:CDS 35.0%
ACTTATGACATGTCCATAAG+CGG - chr1_3:69449056-69449075 Msa0137130:CDS 35.0%
AATAACCTGAAAACCGCTTA+TGG + chr1_3:69449072-69449091 None:intergenic 35.0%
AACGCGTAAAATAAATGCCT+GGG + chr1_3:69449249-69449268 None:intergenic 35.0%
AAACGCGTAAAATAAATGCC+TGG + chr1_3:69449250-69449269 None:intergenic 35.0%
TTAGTTATAGTCTTCTTGCG+AGG - chr1_3:69449361-69449380 Msa0137130:intron 35.0%
TTCCATCATTTCTTCGATTG+GGG + chr1_3:69449572-69449591 None:intergenic 35.0%
! AATGATGGAATTCTAGCTGT+TGG - chr1_3:69449582-69449601 Msa0137130:intron 35.0%
! GTAGAGGCATGACATATAAA+AGG + chr1_3:69449714-69449733 None:intergenic 35.0%
GTTAGCATACCTATACCTAT+AGG + chr1_3:69449907-69449926 None:intergenic 35.0%
!!! TGGGAAATTTTAGGGCTTAC+TGG - chr1_3:69443727-69443746 Msa0137130:three_prime_UTR 40.0%
!!! GGGAAATTTTAGGGCTTACT+GGG - chr1_3:69443728-69443747 Msa0137130:three_prime_UTR 40.0%
!! AAAAGGGTATTCATTGGAGC+AGG - chr1_3:69443892-69443911 Msa0137130:CDS 40.0%
TCAAAATTTGAGCACTCTGC+AGG + chr1_3:69444074-69444093 None:intergenic 40.0%
ATGTACCTTCCCATCAACAA+GGG + chr1_3:69444465-69444484 None:intergenic 40.0%
TACCACAATCCCACAAGAAA+GGG - chr1_3:69444595-69444614 Msa0137130:intron 40.0%
ACATGTAACCCCTTTCTTGT+GGG + chr1_3:69444607-69444626 None:intergenic 40.0%
TACATGTAACCCCTTTCTTG+TGG + chr1_3:69444608-69444627 None:intergenic 40.0%
!! ATCTATGGTAGCCTTATCGA+TGG - chr1_3:69444871-69444890 Msa0137130:intron 40.0%
ACAAGATTCACCTTTACTGC+GGG - chr1_3:69444948-69444967 Msa0137130:intron 40.0%
GAATGTACAAACTGGGTTCA+TGG + chr1_3:69445092-69445111 None:intergenic 40.0%
GCTCACATGAATGTACAAAC+TGG + chr1_3:69445100-69445119 None:intergenic 40.0%
! AGCTAAAAGGGCATACAGAT+TGG - chr1_3:69445117-69445136 Msa0137130:intron 40.0%
GTAATGAGAAGTCCAAACTC+CGG + chr1_3:69445145-69445164 None:intergenic 40.0%
AAACGGGAATGGCATATACA+GGG - chr1_3:69445265-69445284 Msa0137130:intron 40.0%
AAGGACAGGACCTTCTATAT+AGG + chr1_3:69445312-69445331 None:intergenic 40.0%
!! GATCATCATAGTCTTGTCCA+TGG + chr1_3:69445483-69445502 None:intergenic 40.0%
TGGACAAGACTATGATGATC+TGG - chr1_3:69445483-69445502 Msa0137130:CDS 40.0%
TGGATGAATGTGGTTACTGT+TGG - chr1_3:69445530-69445549 Msa0137130:CDS 40.0%
! TGACAACTGGCTTACACAAA+AGG - chr1_3:69445667-69445686 Msa0137130:intron 40.0%
ATCGGTGACTGATATAGCAT+GGG - chr1_3:69445709-69445728 Msa0137130:intron 40.0%
TGAATCTCATCTTGAATCCC+CGG - chr1_3:69446007-69446026 Msa0137130:intron 40.0%
GATTCATCATGATGAATCCG+GGG + chr1_3:69446027-69446046 None:intergenic 40.0%
TGAATCTCATCTTGAATCCC+CGG - chr1_3:69446007-69446026 Msa0137130:intron 40.0%
GGTGTTAACTTTGACTGCAA+AGG - chr1_3:69446997-69447016 Msa0137130:CDS 40.0%
TCGTAGGTAGTTGACTGATA+GGG - chr1_3:69447034-69447053 Msa0137130:CDS 40.0%
TACAGCTTATGGTAAGCTGT+TGG - chr1_3:69447113-69447132 Msa0137130:CDS 40.0%
!! ACCATTGGCTCTTTGTAGAA+GGG - chr1_3:69447267-69447286 Msa0137130:intron 40.0%
TAGAAGGGAAACCTTAGAGA+CGG - chr1_3:69447282-69447301 Msa0137130:intron 40.0%
AATTGACAACTCCGTCTCTA+AGG + chr1_3:69447296-69447315 None:intergenic 40.0%
TTATCCTAGCTTCGCCATTA+TGG - chr1_3:69447392-69447411 Msa0137130:intron 40.0%
TAGTGCACACATGGATTCTT+TGG + chr1_3:69447500-69447519 None:intergenic 40.0%
GATCATGTTTAGTGCACACA+TGG + chr1_3:69447509-69447528 None:intergenic 40.0%
GAAATAGCAGCTAGAGTTGT+GGG + chr1_3:69447668-69447687 None:intergenic 40.0%
TGAAATAGCAGCTAGAGTTG+TGG + chr1_3:69447669-69447688 None:intergenic 40.0%
GGACATATTGTCTACGTACT+TGG - chr1_3:69447847-69447866 Msa0137130:intron 40.0%
GATGTCTGCATCTCATATTG+AGG - chr1_3:69447869-69447888 Msa0137130:intron 40.0%
ATATGGGTCCATCCAAATGA+TGG - chr1_3:69447892-69447911 Msa0137130:intron 40.0%
TATCACTACCAGCCATCATT+TGG + chr1_3:69447907-69447926 None:intergenic 40.0%
CATGAGACCTCTGATACAAA+TGG - chr1_3:69448091-69448110 Msa0137130:CDS 40.0%
TGAGACCTCTGATACAAATG+GGG - chr1_3:69448093-69448112 Msa0137130:CDS 40.0%
ATCAACCCCATTTGTATCAG+AGG + chr1_3:69448101-69448120 None:intergenic 40.0%
TCTGATACAAATGGGGTTGA+TGG - chr1_3:69448100-69448119 Msa0137130:CDS 40.0%
ACCTCCAATTGAAGATCAAC+TGG - chr1_3:69448174-69448193 Msa0137130:CDS 40.0%
CATGCCAGTTGATCTTCAAT+TGG + chr1_3:69448181-69448200 None:intergenic 40.0%
CAATTGAAGATCAACTGGCA+TGG - chr1_3:69448179-69448198 Msa0137130:CDS 40.0%
TCACATAAACTCTATGGCCA+TGG - chr1_3:69448220-69448239 Msa0137130:CDS 40.0%
! GCTTGTTGCTTCTTCATGTA+AGG - chr1_3:69448282-69448301 Msa0137130:CDS 40.0%
TCATGTAAGGTATGCACTGT+TGG - chr1_3:69448295-69448314 Msa0137130:CDS 40.0%
! ATGCACTGTTGGTCTAACTA+TGG - chr1_3:69448306-69448325 Msa0137130:CDS 40.0%
CAAAACGATCTAAGCCAAGT+TGG + chr1_3:69448488-69448507 None:intergenic 40.0%
! CAACTTGGCTTAGATCGTTT+TGG - chr1_3:69448486-69448505 Msa0137130:CDS 40.0%
TAAAGTGTACAACGGTGAGA+CGG + chr1_3:69448516-69448535 None:intergenic 40.0%
TTAAGCTATGGGATTGCAAG+CGG + chr1_3:69448666-69448685 None:intergenic 40.0%
! CTGTGTCACTGTTAAGCTAT+GGG + chr1_3:69448677-69448696 None:intergenic 40.0%
! TCTGTGTCACTGTTAAGCTA+TGG + chr1_3:69448678-69448697 None:intergenic 40.0%
TAGCTTAACAGTGACACAGA+TGG - chr1_3:69448678-69448697 Msa0137130:intron 40.0%
ACAGATATGCTTGCATTCTG+AGG + chr1_3:69448801-69448820 None:intergenic 40.0%
! TTTGGAGCACATCGATGTTA+TGG - chr1_3:69448892-69448911 Msa0137130:intron 40.0%
! AAGCGCTTGTGATTTTGTTC+GGG - chr1_3:69449017-69449036 Msa0137130:CDS 40.0%
! ATTTTGTTCGGGAGAGCTTA+TGG - chr1_3:69449028-69449047 Msa0137130:CDS 40.0%
ACGCGTAAAATAAATGCCTG+GGG + chr1_3:69449248-69449267 None:intergenic 40.0%
GGATTATCTGGTCATGTTCT+TGG - chr1_3:69449400-69449419 Msa0137130:intron 40.0%
GTGAACCTGTTGCAAATTCA+TGG + chr1_3:69449437-69449456 None:intergenic 40.0%
CGACAAGACAGTGAAAATCT+GGG - chr1_3:69449458-69449477 Msa0137130:intron 40.0%
TAGTGTGACAGCATTGTCTT+GGG - chr1_3:69449539-69449558 Msa0137130:intron 40.0%
! TGGAATTCTAGCTGTTGGAA+TGG - chr1_3:69449587-69449606 Msa0137130:intron 40.0%
CTAGCTGTTGGAATGGAAAA+CGG - chr1_3:69449594-69449613 Msa0137130:intron 40.0%
AAAACGGCCAAATAGAGTTG+TGG - chr1_3:69449610-69449629 Msa0137130:intron 40.0%
ACAGACTCCACAACTCTATT+TGG + chr1_3:69449620-69449639 None:intergenic 40.0%
TCTGTCCTATAACAGACAAG+AGG - chr1_3:69449635-69449654 Msa0137130:intron 40.0%
TCCTATAACAGACAAGAGGA+TGG - chr1_3:69449639-69449658 Msa0137130:intron 40.0%
TCCATCCTCTTGTCTGTTAT+AGG + chr1_3:69449643-69449662 None:intergenic 40.0%
! AGTCTACAACTTGCTTCTTG+TGG - chr1_3:69449777-69449796 Msa0137130:CDS 40.0%
TTGGGTCAGTCAGTGTTAGT+GGG + chr1_3:69443762-69443781 None:intergenic 45.0%
ATTGGGTCAGTCAGTGTTAG+TGG + chr1_3:69443763-69443782 None:intergenic 45.0%
AGTAACCTTGGGGTCGAAAA+TGG + chr1_3:69443992-69444011 None:intergenic 45.0%
!! CAAATTTTGACCACCCTTCC+TGG - chr1_3:69444084-69444103 Msa0137130:CDS 45.0%
! AACAGCTTTGTGACCAGGAA+GGG + chr1_3:69444100-69444119 None:intergenic 45.0%
! TTGACAACAGCTTTGTGACC+AGG + chr1_3:69444105-69444124 None:intergenic 45.0%
CTGTTGTCAATTGCACTCAC+TGG - chr1_3:69444115-69444134 Msa0137130:CDS 45.0%
TTGCTATCTGGAGATGCTGA+TGG - chr1_3:69444416-69444435 Msa0137130:intron 45.0%
GATGTACCTTCCCATCAACA+AGG + chr1_3:69444466-69444485 None:intergenic 45.0%
GTACCACAATCCCACAAGAA+AGG - chr1_3:69444594-69444613 Msa0137130:intron 45.0%
ACCACAATCCCACAAGAAAG+GGG - chr1_3:69444596-69444615 Msa0137130:intron 45.0%
AACCAACGGAAAAAGAGTCC+AGG + chr1_3:69444847-69444866 None:intergenic 45.0%
!! TATGGTAGCCTTATCGATGG+CGG - chr1_3:69444874-69444893 Msa0137130:intron 45.0%
ACGATTTGACCACTACATCC+AGG + chr1_3:69444905-69444924 None:intergenic 45.0%
TGGTCAAATCGTCCTTGCAA+TGG - chr1_3:69444913-69444932 Msa0137130:intron 45.0%
GGTCAAATCGTCCTTGCAAT+GGG - chr1_3:69444914-69444933 Msa0137130:intron 45.0%
TATCCAATCCTCCCATTGCA+AGG + chr1_3:69444928-69444947 None:intergenic 45.0%
CAAGATTCACCTTTACTGCG+GGG - chr1_3:69444949-69444968 Msa0137130:intron 45.0%
AAGATTCACCTTTACTGCGG+GGG - chr1_3:69444950-69444969 Msa0137130:intron 45.0%
TGGCGACAAAGATACCTTTC+CGG + chr1_3:69444981-69445000 None:intergenic 45.0%
! AAGGGCATACAGATTGGATC+CGG - chr1_3:69445123-69445142 Msa0137130:intron 45.0%
TACAGATTGGATCCGGAGTT+TGG - chr1_3:69445130-69445149 Msa0137130:intron 45.0%
ACCTGTAAGCATCAATGGAG+AGG - chr1_3:69445163-69445182 Msa0137130:intron 45.0%
ACCTCTCCATTGATGCTTAC+AGG + chr1_3:69445167-69445186 None:intergenic 45.0%
CTGTATATGCCATTCCCGTT+TGG + chr1_3:69445266-69445285 None:intergenic 45.0%
CAAACGGGAATGGCATATAC+AGG - chr1_3:69445264-69445283 Msa0137130:intron 45.0%
TATAGAAGGTCCTGTCCTTG+TGG - chr1_3:69445313-69445332 Msa0137130:intron 45.0%
! CACACACCAGAAGTCTTTTC+AGG + chr1_3:69445512-69445531 None:intergenic 45.0%
CTGAAAAGACTTCTGGTGTG+TGG - chr1_3:69445510-69445529 Msa0137130:CDS 45.0%
TTCTGGTGTGTGGATGAATG+TGG - chr1_3:69445520-69445539 Msa0137130:CDS 45.0%
TGGGATTCTATGGTGGTCAT+TGG - chr1_3:69445573-69445592 Msa0137130:CDS 45.0%
!! ATGGTGGATCGTTCCATCTT+TGG - chr1_3:69445630-69445649 Msa0137130:intron 45.0%
CTTACACAAAAGGTTCCCTC+TGG - chr1_3:69445677-69445696 Msa0137130:intron 45.0%
!! TCCCTCTGGTCATTTTGCAT+CGG - chr1_3:69445691-69445710 Msa0137130:intron 45.0%
ACCGATGCAAAATGACCAGA+GGG + chr1_3:69445695-69445714 None:intergenic 45.0%
CATCGGTGACTGATATAGCA+TGG - chr1_3:69445708-69445727 Msa0137130:intron 45.0%
!! GATATAGCATGGGCTAGATC+TGG - chr1_3:69445719-69445738 Msa0137130:intron 45.0%
TATATCAGCTAGCCATGACC+AGG - chr1_3:69445751-69445770 Msa0137130:intron 45.0%
TTATGCTCCATGGAAAGTCG+AGG - chr1_3:69446579-69446598 Msa0137130:intron 45.0%
AGAGAAACCTCGACTTTCCA+TGG + chr1_3:69446589-69446608 None:intergenic 45.0%
GTCGAGGTTTCTCTTCAAGA+TGG - chr1_3:69446595-69446614 Msa0137130:intron 45.0%
CTCTTCAAGATGGAGAGTCT+TGG - chr1_3:69446605-69446624 Msa0137130:intron 45.0%
AGTCTTGGTATGAGATTGCG+CGG - chr1_3:69446620-69446639 Msa0137130:intron 45.0%
ATATCATGGCCATGAACCTG+AGG + chr1_3:69446646-69446665 None:intergenic 45.0%
! AAGGGGAATCACCGTTTTGT+TGG - chr1_3:69446691-69446710 Msa0137130:intron 45.0%
GGTGCAAATATGTCAGCTCT+TGG - chr1_3:69446838-69446857 Msa0137130:intron 45.0%
GGATTTGGCTGTATACTCGT+AGG - chr1_3:69447018-69447037 Msa0137130:CDS 45.0%
CTCGTAGGTAGTTGACTGAT+AGG - chr1_3:69447033-69447052 Msa0137130:CDS 45.0%
!! GACCATTGGCTCTTTGTAGA+AGG - chr1_3:69447266-69447285 Msa0137130:intron 45.0%
TCCCTTCTACAAAGAGCCAA+TGG + chr1_3:69447271-69447290 None:intergenic 45.0%
GAGACGGAGTTGTCAATTAG+TGG - chr1_3:69447298-69447317 Msa0137130:intron 45.0%
GCGAAGCTAGGATAATACTG+TGG + chr1_3:69447387-69447406 None:intergenic 45.0%
ATAGCCATAATGGCGAAGCT+AGG + chr1_3:69447399-69447418 None:intergenic 45.0%
TAGCTTCGCCATTATGGCTA+TGG - chr1_3:69447398-69447417 Msa0137130:intron 45.0%
CAGTTTCTGAGCTGATGTAG+CGG - chr1_3:69447433-69447452 Msa0137130:intron 45.0%
GCTAGAGTTGTGGGCAAATA+GGG + chr1_3:69447659-69447678 None:intergenic 45.0%
AGCTAGAGTTGTGGGCAAAT+AGG + chr1_3:69447660-69447679 None:intergenic 45.0%
ACTACCAGCCATCATTTGGA+TGG + chr1_3:69447903-69447922 None:intergenic 45.0%
AACCATAGTCATAGAAGGGC+TGG - chr1_3:69447938-69447957 Msa0137130:intron 45.0%
TACCAGCCCTTCTATGACTA+TGG + chr1_3:69447943-69447962 None:intergenic 45.0%
!! TACAAATGGGGTTGATGGTC+TGG - chr1_3:69448105-69448124 Msa0137130:CDS 45.0%
AAACACAGTTGGAACTGCGT+CGG + chr1_3:69448149-69448168 None:intergenic 45.0%
GGAGGTTCAGTAAACACAGT+TGG + chr1_3:69448160-69448179 None:intergenic 45.0%
GCCAGTTGATCTTCAATTGG+AGG + chr1_3:69448178-69448197 None:intergenic 45.0%
AAAGTGTACAACGGTGAGAC+GGG + chr1_3:69448515-69448534 None:intergenic 45.0%
TTCTGCCACAGCAGTAGATT+GGG + chr1_3:69448605-69448624 None:intergenic 45.0%
! GTTGGTTCATGGAAAGCAGT+TGG - chr1_3:69448640-69448659 Msa0137130:intron 45.0%
! CATGTCCATAAGCGGTTTTC+AGG - chr1_3:69449064-69449083 Msa0137130:CDS 45.0%
TTATAGTCTTCTTGCGAGGC+AGG - chr1_3:69449365-69449384 Msa0137130:intron 45.0%
TCATGTTCTTGGAACCCACA+CGG - chr1_3:69449411-69449430 Msa0137130:intron 45.0%
TTGCAAATTCATGGCCGTGT+GGG + chr1_3:69449428-69449447 None:intergenic 45.0%
GCGACAAGACAGTGAAAATC+TGG - chr1_3:69449457-69449476 Msa0137130:intron 45.0%
GTCACACTACTCGTAAATGG+AGG + chr1_3:69449528-69449547 None:intergenic 45.0%
GCTGTCACACTACTCGTAAA+TGG + chr1_3:69449531-69449550 None:intergenic 45.0%
GTAGTGTGACAGCATTGTCT+TGG - chr1_3:69449538-69449557 Msa0137130:intron 45.0%
CTCCCCAATCGAAGAAATGA+TGG - chr1_3:69449567-69449586 Msa0137130:intron 45.0%
!! GGATGGAAGCATTGTAGTAC+CGG - chr1_3:69449656-69449675 Msa0137130:intron 45.0%
!! GATGGAAGCATTGTAGTACC+GGG - chr1_3:69449657-69449676 Msa0137130:intron 45.0%
! CAATTTTCCTCCATGCCAGA+CGG + chr1_3:69449743-69449762 None:intergenic 45.0%
TCTGGCATGGAGGAAAATTG+AGG - chr1_3:69449743-69449762 Msa0137130:CDS 45.0%
! ACAGAGGGCAGCGAGATTTT+CGG + chr1_3:69443829-69443848 None:intergenic 50.0%
AAAATCTCGCTGCCCTCTGT+CGG - chr1_3:69443829-69443848 Msa0137130:three_prime_UTR 50.0%
ATTGTCACAGCTCCGACAGA+GGG + chr1_3:69443844-69443863 None:intergenic 50.0%
TATTGTCACAGCTCCGACAG+AGG + chr1_3:69443845-69443864 None:intergenic 50.0%
! CAACAGCTTTGTGACCAGGA+AGG + chr1_3:69444101-69444120 None:intergenic 50.0%
TGGGAACTGTCCCTTGTTGA+TGG - chr1_3:69444452-69444471 Msa0137130:intron 50.0%
GGGAACTGTCCCTTGTTGAT+GGG - chr1_3:69444453-69444472 Msa0137130:intron 50.0%
! ACTGTCCCTTGTTGATGGGA+AGG - chr1_3:69444457-69444476 Msa0137130:intron 50.0%
ACCCCTTTCTTGTGGGATTG+TGG + chr1_3:69444600-69444619 None:intergenic 50.0%
GTACTTCCACTGACGAGTAG+TGG - chr1_3:69444708-69444727 Msa0137130:intron 50.0%
! TGCCTGGACTCTTTTTCCGT+TGG - chr1_3:69444842-69444861 Msa0137130:intron 50.0%
AGGCAATTCCGCCATCGATA+AGG + chr1_3:69444885-69444904 None:intergenic 50.0%
!! TTATCGATGGCGGAATTGCC+TGG - chr1_3:69444884-69444903 Msa0137130:intron 50.0%
CAAATCGTCCTTGCAATGGG+AGG - chr1_3:69444917-69444936 Msa0137130:intron 50.0%
TTACGTAGCTCCGTGCCAAA+CGG - chr1_3:69445248-69445267 Msa0137130:intron 50.0%
TATGCCATTCCCGTTTGGCA+CGG + chr1_3:69445261-69445280 None:intergenic 50.0%
AAGAAGAAGAGCCAGCCACA+AGG + chr1_3:69445331-69445350 None:intergenic 50.0%
TTCCGTGGATGCAACCAAAG+GGG + chr1_3:69445420-69445439 None:intergenic 50.0%
CTTCCGTGGATGCAACCAAA+GGG + chr1_3:69445421-69445440 None:intergenic 50.0%
CTTTGGTTGCATCCACGGAA+GGG - chr1_3:69445420-69445439 Msa0137130:intron 50.0%
TTTGGTTGCATCCACGGAAG+GGG - chr1_3:69445421-69445440 Msa0137130:intron 50.0%
TGGCAGCCTGAAAAGACTTC+TGG - chr1_3:69445503-69445522 Msa0137130:CDS 50.0%
GAACTAAGCCACTGTGCTCT+GGG - chr1_3:69445554-69445573 Msa0137130:CDS 50.0%
CATAGAATCCCAGAGCACAG+TGG + chr1_3:69445565-69445584 None:intergenic 50.0%
!! CACTGTGCTCTGGGATTCTA+TGG - chr1_3:69445563-69445582 Msa0137130:CDS 50.0%
!! TGTGCTCTGGGATTCTATGG+TGG - chr1_3:69445566-69445585 Msa0137130:CDS 50.0%
CACCGATGCAAAATGACCAG+AGG + chr1_3:69445696-69445715 None:intergenic 50.0%
GAGTGAATCGGGGTTCATTG+CGG + chr1_3:69446158-69446177 None:intergenic 50.0%
!! GGGAATCACCGTTTTGTTGG+CGG - chr1_3:69446694-69446713 Msa0137130:intron 50.0%
CATCAGCTCCGCCAACAAAA+CGG + chr1_3:69446705-69446724 None:intergenic 50.0%
CTTCGCCATTATGGCTATGG+CGG - chr1_3:69447401-69447420 Msa0137130:intron 50.0%
AACAGCCGCCATAGCCATAA+TGG + chr1_3:69447409-69447428 None:intergenic 50.0%
CGCTACATCAGCTCAGAAAC+TGG + chr1_3:69447435-69447454 None:intergenic 50.0%
AGGGAATGGATGCAGAGCAT+CGG + chr1_3:69447620-69447639 None:intergenic 50.0%
TGCGTCGGGAACAGTTTCAA+AGG + chr1_3:69448134-69448153 None:intergenic 50.0%
AACACAGTTGGAACTGCGTC+GGG + chr1_3:69448148-69448167 None:intergenic 50.0%
AACTGGCATGGCACACACTT+TGG - chr1_3:69448191-69448210 Msa0137130:CDS 50.0%
CTTCTGCCACAGCAGTAGAT+TGG + chr1_3:69448606-69448625 None:intergenic 50.0%
CTACTGCTGTGGCAGAAGTA+TGG - chr1_3:69448608-69448627 Msa0137130:CDS 50.0%
! CTGTGGCAGAAGTATGGCTT+TGG - chr1_3:69448614-69448633 Msa0137130:intron 50.0%
!! GAAGTATGGCTTTGGCAGGT+TGG - chr1_3:69448622-69448641 Msa0137130:intron 50.0%
!! AGGGACACAAGCGGATTATC+TGG - chr1_3:69449388-69449407 Msa0137130:intron 50.0%
GTTGCAAATTCATGGCCGTG+TGG + chr1_3:69449429-69449448 None:intergenic 50.0%
CACGGCCATGAATTTGCAAC+AGG - chr1_3:69449429-69449448 Msa0137130:intron 50.0%
GTGACAGCATTGTCTTGGGT+TGG - chr1_3:69449543-69449562 Msa0137130:intron 50.0%
TACGCGAACAAGAAGAGCAG+CGG + chr1_3:69449688-69449707 None:intergenic 50.0%
TGCCTCTACAGTAAACCGTC+TGG - chr1_3:69449725-69449744 Msa0137130:intron 50.0%
TGCCAGACGGTTTACTGTAG+AGG + chr1_3:69449730-69449749 None:intergenic 50.0%
CTACAGTAAACCGTCTGGCA+TGG - chr1_3:69449730-69449749 Msa0137130:CDS 50.0%
! CAGAGGGCAGCGAGATTTTC+GGG + chr1_3:69443828-69443847 None:intergenic 55.0%
! AACGTCTCTTGGGGTGCTTC+TGG - chr1_3:69443934-69443953 Msa0137130:CDS 55.0%
CTTGGGGTCGAAAATGGCGA+CGG + chr1_3:69443986-69444005 None:intergenic 55.0%
! AGCTTTGTGACCAGGAAGGG+TGG + chr1_3:69444097-69444116 None:intergenic 55.0%
GGCTTACCACTACTCGTCAG+TGG + chr1_3:69444717-69444736 None:intergenic 55.0%
GCGGAATTGCCTGGATGTAG+TGG - chr1_3:69444893-69444912 Msa0137130:intron 55.0%
CGTCCTTGCAATGGGAGGAT+TGG - chr1_3:69444922-69444941 Msa0137130:intron 55.0%
TTCACCTTTACTGCGGGGGA+AGG - chr1_3:69444954-69444973 Msa0137130:CDS 55.0%
TACGTAGCTCCGTGCCAAAC+GGG - chr1_3:69445249-69445268 Msa0137130:intron 55.0%
CGGGAATGGCATATACAGGG+AGG - chr1_3:69445268-69445287 Msa0137130:intron 55.0%
GGTTGAATGGCAACCCCCTT+TGG - chr1_3:69445403-69445422 Msa0137130:intron 55.0%
ACCCCCTTTGGTTGCATCCA+CGG - chr1_3:69445415-69445434 Msa0137130:intron 55.0%
TCCGTGGATGCAACCAAAGG+GGG + chr1_3:69445419-69445438 None:intergenic 55.0%
CCTTCCGTGGATGCAACCAA+AGG + chr1_3:69445422-69445441 None:intergenic 55.0%
CCTTTGGTTGCATCCACGGA+AGG - chr1_3:69445419-69445438 Msa0137130:intron 55.0%
ATAACAGGCTTCCCCTTCCG+TGG + chr1_3:69445435-69445454 None:intergenic 55.0%
CGAACTAAGCCACTGTGCTC+TGG - chr1_3:69445553-69445572 Msa0137130:CDS 55.0%
GGTGGTCATTGGAGCCCAAA+TGG - chr1_3:69445584-69445603 Msa0137130:CDS 55.0%
GGGTCCATCCAAATGATGGC+TGG - chr1_3:69447896-69447915 Msa0137130:intron 55.0%
!! GGCAGAAGTATGGCTTTGGC+AGG - chr1_3:69448618-69448637 Msa0137130:intron 55.0%
!! GGCTTTGGCAGGTTGGTTCA+TGG - chr1_3:69448629-69448648 Msa0137130:intron 55.0%
GTTCATTCAAACAGGGCCCC+AGG - chr1_3:69449229-69449248 Msa0137130:intron 55.0%
TAGTCTTCTTGCGAGGCAGG+AGG - chr1_3:69449368-69449387 Msa0137130:intron 55.0%
AGTCTTCTTGCGAGGCAGGA+GGG - chr1_3:69449369-69449388 Msa0137130:intron 55.0%
CAGTAAACCGTCTGGCATGG+AGG - chr1_3:69449733-69449752 Msa0137130:CDS 55.0%
!! TTTTCGGGCGACGGCGATGA+TGG + chr1_3:69443813-69443832 None:intergenic 60.0%
!! GCAGCGAGATTTTCGGGCGA+CGG + chr1_3:69443822-69443841 None:intergenic 60.0%
!! CGTCGCCATTTTCGACCCCA+AGG - chr1_3:69443984-69444003 Msa0137130:CDS 60.0%
CTTTACTGCGGGGGAAGGAC+CGG - chr1_3:69444959-69444978 Msa0137130:CDS 60.0%
AGCTCCGTGCCAAACGGGAA+TGG - chr1_3:69445254-69445273 Msa0137130:intron 60.0%
GAAGGTCCTGTCCTTGTGGC+TGG - chr1_3:69445317-69445336 Msa0137130:intron 60.0%
GAAGAGCCAGCCACAAGGAC+AGG + chr1_3:69445326-69445345 None:intergenic 60.0%
GTATGAGATTGCGCGGCCTC+AGG - chr1_3:69446627-69446646 Msa0137130:intron 60.0%
ATTGCGCGGCCTCAGGTTCA+TGG - chr1_3:69446634-69446653 Msa0137130:intron 60.0%
GCAGGCCCAATCTACTGCTG+TGG - chr1_3:69448597-69448616 Msa0137130:CDS 60.0%
AGAAGAGCAGCGGCGAAACC+CGG + chr1_3:69449678-69449697 None:intergenic 60.0%
! GGGCGACGGCGATGATGGTT+GGG + chr1_3:69443808-69443827 None:intergenic 65.0%
CGGTCCTTCCCCCGCAGTAA+AGG + chr1_3:69444961-69444980 None:intergenic 65.0%
CGAGGCAGGAGGGACACAAG+CGG - chr1_3:69449379-69449398 Msa0137130:intron 65.0%
! CGGGCGACGGCGATGATGGT+TGG + chr1_3:69443809-69443828 None:intergenic 70.0%
CTGCGGGGGAAGGACCGGAA+AGG - chr1_3:69444964-69444983 Msa0137130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69443721 69450010 69443721 ID=Msa0137130;Name=Msa0137130
chr1_3 mRNA 69443721 69450010 69443721 ID=Msa0137130-mRNA-1;Parent=Msa0137130;Name=Msa0137130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=144|0.88|0.9|1|1|1|10|171|816
chr1_3 exon 69443721 69444382 69443721 ID=Msa0137130-mRNA-1:exon:24010;Parent=Msa0137130-mRNA-1
chr1_3 exon 69444953 69445130 69444953 ID=Msa0137130-mRNA-1:exon:24009;Parent=Msa0137130-mRNA-1
chr1_3 exon 69445428 69445645 69445428 ID=Msa0137130-mRNA-1:exon:24008;Parent=Msa0137130-mRNA-1
chr1_3 exon 69446842 69447163 69446842 ID=Msa0137130-mRNA-1:exon:24007;Parent=Msa0137130-mRNA-1
chr1_3 exon 69447959 69448630 69447959 ID=Msa0137130-mRNA-1:exon:24006;Parent=Msa0137130-mRNA-1
chr1_3 exon 69448746 69448906 69448746 ID=Msa0137130-mRNA-1:exon:24005;Parent=Msa0137130-mRNA-1
chr1_3 exon 69449002 69449155 69449002 ID=Msa0137130-mRNA-1:exon:24004;Parent=Msa0137130-mRNA-1
chr1_3 exon 69449253 69449338 69449253 ID=Msa0137130-mRNA-1:exon:24003;Parent=Msa0137130-mRNA-1
chr1_3 exon 69449626 69449653 69449626 ID=Msa0137130-mRNA-1:exon:24002;Parent=Msa0137130-mRNA-1
chr1_3 exon 69449726 69450010 69449726 ID=Msa0137130-mRNA-1:exon:24001;Parent=Msa0137130-mRNA-1
chr1_3 five_prime_UTR 69449867 69450010 69449867 ID=Msa0137130-mRNA-1:five_prime_utr;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69449726 69449866 69449726 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69449626 69449653 69449626 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69449253 69449338 69449253 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69449002 69449155 69449002 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69448746 69448906 69448746 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69447959 69448630 69447959 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69446842 69447163 69446842 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69445428 69445645 69445428 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69444953 69445130 69444953 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 CDS 69443892 69444382 69443892 ID=Msa0137130-mRNA-1:cds;Parent=Msa0137130-mRNA-1
chr1_3 three_prime_UTR 69443721 69443891 69443721 ID=Msa0137130-mRNA-1:three_prime_utr;Parent=Msa0137130-mRNA-1
Gene Sequence

>Msa0137130

ATGCATATCGAAGAAGGAGTTGAAGTGAAAAGGGTATTCATTGGAGCAGGATGCAACAGAATAGTGAATAACGTCTCTTGGGGTGCTTCTGGTTTTGTTTCTTTTGGAGCTTCAAACGCCGTCGCCATTTTCGACCCCAAGAGTGCTCAAATTTTGACCACCCTTCCTGCAAAAGAATTGGAACTGCATTATTTGCTATCTGGAGATGCTGATGGTGCTATTATTCTATGGGAACTGTCCCTTGTTGATGGGAAGTGGAGGCAAGTGTCACAAGTACCACAATCCCACAAGAAAGGGGTTACATGTATTGATGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGTACTGTTTGTATATGGGAACTTGTACTTCCACTGACGAGTAGTGGTGACTGTAAATTATCATGCCTGGACTCTTTTTCCGTTGGTTCTAAATCTATGGTAGCCTTATCGATGGCGGAATTGCCTGGATGTAGTGGTCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTACTGCGGGGGAAGGACCGGAAAGTTTGTACATTCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTGTAAGCATCAATGGAGAGGTAAACAATATTTTTCTGGTGAGTTCATCTCAAGACAAATGCATACGAATTTGGAAGATGGCATTACGTAGCTCCGTGCCAAACGGGAATGGCATATACAGGGAGGAAGAGTCAAGCTTATCATCCTATATAGAAGGTCCTGTCCTTGTGGCTGGCTCTTCTTCTTTTCAGATATCCTTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTTGAATGGCAACCCCCTTTGGTTGCATCCACGGAAGGGGAAGCCTGTTATCAACCACAAAGCATTTTATCTGCATCCATGGACAAGACTATGATGATCTGGCAGCCTGAAAAGACTTCTGGTGTGTGGATGAATGTGGTTACTGTTGGCGAACTAAGCCACTGTGCTCTGGGATTCTATGGTGGTCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCGTTCCATCTTTGGAAAAATGTTGGTGATGACAACTGGCTTACACAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGATATAGCATGGGCTAGATCTGGTGATTACATTATATCAGCTAGCCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTCGAGGTTTCTCTTCAAGATGGAGAGTCTTGGTATGAGATTGCGCGGCCTCAGGTTCATGGCCATGATATAAATTGTATGACAGTTGTTCATAGTAAGGGGAATCACCGTTTTGTTGGCGGAGCTGATGAGAAAGTTGCTAGAGTGTTTGAAGCTCCATTATCATTTTTGAAAACGTTGAGTAACGCCACTTTGCAGAAGTCTTGTTATTCTGATGACGACTTGACAAACATCCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAAAAACCTATTTATGCCCAAGCTGTACATGAGACCTCTGATACAAATGGGGTTGATGGTCTGGACACCTTTGAAACTGTTCCCGACGCAGTTCCAACTGTGTTTACTGAACCTCCAATTGAAGATCAACTGGCATGGCACACACTTTGGCCTGAATCACATAAACTCTATGGCCATGGAAATGAGCTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTACTGCTGTGGCAGAAGTATGGCTTTGGCAGGTTGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCATAGCTTAACAGTGACACAGATGGAATTCTCACACGATGACAACTTTCTTTTGACTGTCTCAAGAGATCGCCAGTTCTCTGTGTTTACAATCACAACAACAGGAACCAGTGAAATTAGTTATAGTCTTCTTGCGAGGCAGGAGGGACACAAGCGGATTATCTGGTCATGTTCTTGGAACCCACACGGCCATGAATTTGCAACAGGTTCACGCGACAAGACAGTGAAAATCTGGGCCGTAGAGAAGAAATCTTCATCAGTAAGACAACTTATGACTTTACCTCCATTTACGAGTAGTGTGACAGCATTGTCTTGGGTTGGTCTCCCCAATCGAAGAAATGATGGAATTCTAGCTGTTGGAATGGAAAACGGCCAAATAGAGTTGTGGAGTCTGTCCTATAACAGACAAGAGGATGGAAGCATTGTAGTACCGGGTTTCGCCGCTGCTCTTCTTGTTCGCGTAGATCCTTTTATATGTCATGCCTCTACAGTAAACCGTCTGGCATGGAGGAAAATTGAGGAAGATCACAAGAGTCTACAACTTGCTTCTTGTGGAGCTGATAATTGTGTGAGAGTGTTTGATGTAACTGTTTGA
Protein sequence

>Msa0137130

MHIEEGVEVKRVFIGAGCNRIVNNVSWGASGFVSFGASNAVAIFDPKSAQILTTLPAKELELHYLLSGDADGAIILWELSLVDGKWRQVSQVPQSHKKGVTCIDGIMVSQTEAMFASTSSDGTVCIWELVLPLTSSGDCKLSCLDSFSVGSKSMVALSMAELPGCSGQIVLAMGGLDNKIHLYCGGRTGKFVHSCELKGHTDWIRSLDFSLPVSINGEVNNIFLVSSSQDKCIRIWKMALRSSVPNGNGIYREEESSLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVEWQPPLVASTEGEACYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGDDNWLTQKVPSGHFASVTDIAWARSGDYIISASHDQTTRIYAPWKVEVSLQDGESWYEIARPQVHGHDINCMTVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLSNATLQKSCYSDDDLTNIQILGANMSALGLSQKPIYAQAVHETSDTNGVDGLDTFETVPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFTITTTGTSEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKKSSSVRQLMTLPPFTSSVTALSWVGLPNRRNDGILAVGMENGQIELWSLSYNRQEDGSIVVPGFAAALLVRVDPFICHASTVNRLAWRKIEEDHKSLQLASCGADNCVRVFDVTV*