AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1419460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419460 MtrunA17_Chr1g0209161 97.727 836 19 0 1 836 1 836 0.0 1689
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1419460 AT1G49540.1 65.077 839 271 12 7 833 7 835 0.0 1108
Msa1419460 AT1G49540.2 65.042 841 270 13 7 833 7 837 0.0 1106

Find 241 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAAACATCCAGATTT+TGG 0.080849 tig0024719:-6435 Msa1419460:CDS
CAGATGGTACTGTTTGTATA+TGG 0.208305 tig0024719:-8571 Msa1419460:CDS
ACCTCTCCATTGATGCTTAC+AGG 0.211910 tig0024719:+8086 None:intergenic
TACATGTATTGATGGAATTA+TGG 0.212375 tig0024719:-8630 Msa1419460:CDS
AACTAACCTTGGGCATAAAT+AGG 0.234409 tig0024719:+6377 None:intergenic
AAGACAAATGCATACGAATT+TGG 0.242871 tig0024719:-8034 Msa1419460:CDS
GAACTGCATTATTTGCTATC+TGG 0.268434 tig0024719:-8846 Msa1419460:CDS
AGAAGAAGAAGAAAGAGAAT+TGG 0.272509 tig0024719:+9476 None:intergenic
ATGGTGGATCGTTCCATCTT+TGG 0.278484 tig0024719:-7620 Msa1419460:CDS
CTGATGGTGCTATTATTCTA+TGG 0.290612 tig0024719:-8818 Msa1419460:CDS
GTACATTCATGTGAGCTAAA+AGG 0.291991 tig0024719:-8146 Msa1419460:CDS
GCTAAAATTGAATCTCCATT+TGG 0.295581 tig0024719:+7651 None:intergenic
ACAGACTCCACAACTCTATT+TGG 0.297076 tig0024719:+3631 None:intergenic
TCCAATCAAAAGAGATTCTA+AGG 0.303182 tig0024719:+7890 None:intergenic
CCATAGAGTTTATGTGATTC+AGG 0.311737 tig0024719:+5036 None:intergenic
TACAGATTGGATCCGGAGTT+TGG 0.311793 tig0024719:-8120 Msa1419460:CDS
TCCATCCTCTTGTCTGTTAT+AGG 0.312730 tig0024719:+3608 None:intergenic
AACGTTTCTTGGGGTGCTTC+TGG 0.315004 tig0024719:-9317 Msa1419460:CDS
TTCTTTATGCTGTGATCATA+AGG 0.318251 tig0024719:-4995 Msa1419460:CDS
ACATATTTGCACCCAAAATC+TGG 0.321358 tig0024719:+6423 None:intergenic
GGATTATCTGGTCATGTTCT+TGG 0.328711 tig0024719:-3848 Msa1419460:CDS
TTCCGTTGGTTCTAAATCTA+TGG 0.332083 tig0024719:-8394 Msa1419460:CDS
CACTGTGCTCTGGGATTCTA+TGG 0.332419 tig0024719:-7687 Msa1419460:CDS
GCGACAAGACAGTGAAAATC+TGG 0.332615 tig0024719:-3791 Msa1419460:CDS
AATGCTTTGTGGTTGATAAC+AGG 0.332640 tig0024719:+7803 None:intergenic
AATAGTGAACAACGTTTCTT+GGG 0.344542 tig0024719:-9327 Msa1419460:CDS
TGGCGACAAAGATACCTTTC+CGG 0.344773 tig0024719:+8272 None:intergenic
GAATAGTGAACAACGTTTCT+TGG 0.352990 tig0024719:-9328 Msa1419460:CDS
GTAGAGGCATGACATATAAA+AGG 0.354208 tig0024719:+3537 None:intergenic
TGTATACACAGCAAAAGAAT+TGG 0.356030 tig0024719:-8868 Msa1419460:intron
ACATGAGGATTGGGTATATT+CGG 0.356150 tig0024719:-7868 Msa1419460:CDS
GAAGAAGAAGAAAGAGAATT+GGG 0.356740 tig0024719:+9477 None:intergenic
GGCTTTGGCAGGTTGGTTCA+TGG 0.357324 tig0024719:-4621 Msa1419460:CDS
ATTCCATCATTTCTTCGATT+GGG 0.357838 tig0024719:+3678 None:intergenic
GCTGTCACACTACTCGTAAA+TGG 0.364831 tig0024719:+3720 None:intergenic
AGTAACCTTGGGGTTGAAAA+TGG 0.365919 tig0024719:+9262 None:intergenic
TGGCAGCCTGAAAAGACTTC+TGG 0.377252 tig0024719:-7747 Msa1419460:CDS
CCTGAATCACATAAACTCTA+TGG 0.383126 tig0024719:-5036 Msa1419460:CDS
GTGAACCTGTTGCAAATTCA+TGG 0.386968 tig0024719:+3814 None:intergenic
GCTTGTTGCTTCTTCATGTA+AGG 0.391628 tig0024719:-4968 Msa1419460:intron
CTACTGCTGTGGCAGAAGTA+TGG 0.394606 tig0024719:-4642 Msa1419460:CDS
TATGACAGTTGTTCATAGTA+AGG 0.395282 tig0024719:-6579 Msa1419460:CDS
CTAAAATTGAATCTCCATTT+GGG 0.396876 tig0024719:+7652 None:intergenic
AAGAAGGAGTTGAAGTGAAA+AGG 0.398466 tig0024719:-9376 Msa1419460:CDS
CGAACTAAGCCACTGTGCTC+TGG 0.400762 tig0024719:-7697 Msa1419460:CDS
TTCTGCCACAGCAGTAGATT+GGG 0.401219 tig0024719:+4648 None:intergenic
TTGAATAGAAATTTGCTACT+TGG 0.403781 tig0024719:+9109 None:intergenic
ACAGAGGGCAGCGAGATTAT+CGG 0.406256 tig0024719:+9425 None:intergenic
TACATTCATGTGAGCTAAAA+GGG 0.406622 tig0024719:-8145 Msa1419460:CDS
AATTCCATCATTTCTTCGAT+TGG 0.407892 tig0024719:+3677 None:intergenic
ACCTCCAATTGAAGATCAAC+TGG 0.411643 tig0024719:-5076 Msa1419460:CDS
TCTGATACAAATGGGGTTGA+TGG 0.415325 tig0024719:-5150 Msa1419460:CDS
CTTCTGCCACAGCAGTAGAT+TGG 0.418879 tig0024719:+4647 None:intergenic
ATTGCGCGGCCTCAGGTTCA+TGG 0.422152 tig0024719:-6617 Msa1419460:CDS
TGGGATTCTATGGTGGTCAT+TGG 0.423535 tig0024719:-7677 Msa1419460:CDS
TTATAGTCTTCTTGCGAGGC+AGG 0.424206 tig0024719:-3883 Msa1419460:CDS
AGAAGGAGTTGAAGTGAAAA+GGG 0.425565 tig0024719:-9375 Msa1419460:CDS
TCTTTATGCTGTGATCATAA+GGG 0.426565 tig0024719:-4994 Msa1419460:CDS
TTATCGATGGCGGAATTGCC+TGG 0.427069 tig0024719:-8366 Msa1419460:CDS
GTTAGCATACCTATACCTAT+AGG 0.427291 tig0024719:+3344 None:intergenic
TGAATAGAAATTTGCTACTT+GGG 0.427437 tig0024719:+9110 None:intergenic
GAAGAGCCAGCCACAAGGAC+AGG 0.427978 tig0024719:+7927 None:intergenic
TCATTACCTGTAAGCATCAA+TGG 0.428341 tig0024719:-8092 Msa1419460:CDS
TGGGAACTGTCCCTTGTTGA+TGG 0.428999 tig0024719:-8798 Msa1419460:CDS
TACCACAATCCCACAAGAAA+GGG 0.429846 tig0024719:-8655 Msa1419460:CDS
GTATGAGATTGCGCGGCCTC+AGG 0.431270 tig0024719:-6624 Msa1419460:CDS
AGCTAAAAGGGCATACAGAT+TGG 0.432748 tig0024719:-8133 Msa1419460:CDS
TACAAATGGGGTTGATGGTC+TGG 0.434125 tig0024719:-5145 Msa1419460:CDS
GAAGTATGGCTTTGGCAGGT+TGG 0.434435 tig0024719:-4628 Msa1419460:CDS
AAGGACAGGACCTTCTATAT+AGG 0.435333 tig0024719:+7941 None:intergenic
AACTGGCATGGCACACACTT+TGG 0.435584 tig0024719:-5059 Msa1419460:CDS
TTTGATTGGACATGAGGATT+GGG 0.435859 tig0024719:-7877 Msa1419460:CDS
CATGAGACCTCTGATACAAA+TGG 0.436275 tig0024719:-5159 Msa1419460:CDS
CTGTATATGCCATTCCCGTT+TGG 0.438205 tig0024719:+7987 None:intergenic
GAAGGTCCTGTCCTTGTGGC+TGG 0.439711 tig0024719:-7933 Msa1419460:CDS
GAAGTGAAAAGGGTATTCAT+TGG 0.440981 tig0024719:-9365 Msa1419460:CDS
AGGGACACAAGCGGATTATC+TGG 0.442277 tig0024719:-3860 Msa1419460:CDS
ATGAGACCTCTGATACAAAT+GGG 0.444909 tig0024719:-5158 Msa1419460:CDS
CACGGCCATGAATTTGCAAC+AGG 0.445611 tig0024719:-3819 Msa1419460:CDS
AGATGGTACTGTTTGTATAT+GGG 0.448027 tig0024719:-8570 Msa1419460:CDS
GGGCGACGGCGATGATGGTT+GGG 0.449048 tig0024719:+9446 None:intergenic
AAAGGGGTTACATGTATTGA+TGG 0.450575 tig0024719:-8638 Msa1419460:CDS
CAAACGGGAATGGCATATAC+AGG 0.452267 tig0024719:-7986 Msa1419460:CDS
CAGAGGGCAGCGAGATTATC+GGG 0.452299 tig0024719:+9426 None:intergenic
ACATGTAACCCCTTTCTTGT+GGG 0.452970 tig0024719:+8646 None:intergenic
CGTCCTTGCAATGGGAGGAT+TGG 0.455070 tig0024719:-8328 Msa1419460:CDS
AACACAGTTGGAACTGCGTC+GGG 0.458249 tig0024719:+5105 None:intergenic
ATTGGGTATATTCGGTTGAA+TGG 0.458591 tig0024719:-7860 Msa1419460:CDS
GGTGGTCATTGGAGCCCAAA+TGG 0.468423 tig0024719:-7666 Msa1419460:CDS
CCTAAAATTTCCCACAGTAC+CGG 0.472671 tig0024719:+9536 None:intergenic
GGTGCAAATATGTCAGCTCT+TGG 0.475040 tig0024719:-6413 Msa1419460:CDS
GTGTTTACAATCACAACAAC+AGG 0.476242 tig0024719:-4493 Msa1419460:intron
CTCCCCAATCGAAGAAATGA+TGG 0.478352 tig0024719:-3681 Msa1419460:CDS
TACGTAGCTCCGTGCCAAAC+GGG 0.479132 tig0024719:-8001 Msa1419460:CDS
AGGCAATTCCGCCATCGATA+AGG 0.479680 tig0024719:+8368 None:intergenic
TGACAACTGGCTTACACAAA+AGG 0.480622 tig0024719:-7583 Msa1419460:CDS
CATGCCAGTTGATCTTCAAT+TGG 0.481967 tig0024719:+5072 None:intergenic
GATATAGCATGGGCTAGATC+TGG 0.482923 tig0024719:-7531 Msa1419460:CDS
CGGGCGACGGCGATGATGGT+TGG 0.484590 tig0024719:+9445 None:intergenic
TGGACAAGACTATGATGATC+TGG 0.487149 tig0024719:-7767 Msa1419460:CDS
GTACCACAATCCCACAAGAA+AGG 0.487530 tig0024719:-8656 Msa1419460:CDS
CTTCCGTGGATGCAACCAAA+GGG 0.488239 tig0024719:+7832 None:intergenic
AGAGAAACCTCGACTTTCCA+TGG 0.491446 tig0024719:+6665 None:intergenic
AATTATGGTTTCTCAAACTG+AGG 0.493661 tig0024719:-8615 Msa1419460:CDS
AGTAGCAAATTTCTATTCAA+AGG 0.493848 tig0024719:-9106 Msa1419460:intron
GGATGGAAGCATTGTAGTAC+CGG 0.495177 tig0024719:-3592 Msa1419460:CDS
ACAAGATTCACCTTTACTGC+GGG 0.496063 tig0024719:-8302 Msa1419460:CDS
CTGTGTCACTGTTAAGCTAT+GGG 0.496668 tig0024719:+4576 None:intergenic
CAACTAGAATTTATGCTCCA+TGG 0.497145 tig0024719:-6682 Msa1419460:CDS
TGATGAAGATTTCTTCTCTA+CGG 0.497228 tig0024719:+3767 None:intergenic
TTACGTAGCTCCGTGCCAAA+CGG 0.497618 tig0024719:-8002 Msa1419460:CDS
ACCCCTTTCTTGTGGGATTG+TGG 0.499253 tig0024719:+8653 None:intergenic
CTAGCTGTTGGAATGGAAAA+CGG 0.499403 tig0024719:-3654 Msa1419460:CDS
GTAGTGTGACAGCATTGTCT+TGG 0.501252 tig0024719:-3710 Msa1419460:CDS
AGCTTATCATCCTATATAGA+AGG 0.501427 tig0024719:-7951 Msa1419460:CDS
TGATTGTAAACACAGAGAAC+TGG 0.501451 tig0024719:+4503 None:intergenic
CTGTCATACAATTTATATCA+TGG 0.501729 tig0024719:+6594 None:intergenic
TCTGTGTCACTGTTAAGCTA+TGG 0.504079 tig0024719:+4575 None:intergenic
CTCTTCAAGATGGAGAGTCT+TGG 0.504927 tig0024719:-6646 Msa1419460:CDS
TACATGTAACCCCTTTCTTG+TGG 0.505650 tig0024719:+8645 None:intergenic
GGTCAAATCGTCCTTGCAAT+GGG 0.506094 tig0024719:-8336 Msa1419460:CDS
GCCAGTTGATCTTCAATTGG+AGG 0.508620 tig0024719:+5075 None:intergenic
AAGACTATAACTAATTTCAC+TGG 0.509024 tig0024719:+3896 None:intergenic
GTCGAGGTTTCTCTTCAAGA+TGG 0.509924 tig0024719:-6656 Msa1419460:CDS
AAAATGTTGGTGATGACAAC+TGG 0.510399 tig0024719:-7596 Msa1419460:CDS
CTGTGGCAGAAGTATGGCTT+TGG 0.512071 tig0024719:-4636 Msa1419460:CDS
ATTGGGTCAGTCAGTGTTGG+TGG 0.512637 tig0024719:+9494 None:intergenic
TGACTGTAAATTATCATGCC+TGG 0.515474 tig0024719:-8424 Msa1419460:CDS
AATGATGGAATTCTAGCTGT+TGG 0.518192 tig0024719:-3666 Msa1419460:CDS
GGCAGAAGTATGGCTTTGGC+AGG 0.518853 tig0024719:-4632 Msa1419460:CDS
TAGTGTGACAGCATTGTCTT+GGG 0.519272 tig0024719:-3709 Msa1419460:CDS
TTTGCATCTACTTCTTCAGA+TGG 0.519491 tig0024719:-8587 Msa1419460:CDS
GAACTAAGCCACTGTGCTCT+GGG 0.520247 tig0024719:-7696 Msa1419460:CDS
AGCTCCGTGCCAAACGGGAA+TGG 0.521165 tig0024719:-7996 Msa1419460:CDS
CCTTTGGTTGCATCCACGGA+AGG 0.522914 tig0024719:-7831 Msa1419460:CDS
ATGACAGTTGTTCATAGTAA+GGG 0.523352 tig0024719:-6578 Msa1419460:CDS
ATAATAATGCATATCGAAGA+AGG 0.523952 tig0024719:-9392 Msa1419460:exon
ATAACAGGCTTCCCCTTCCG+TGG 0.525346 tig0024719:+7818 None:intergenic
TTCCATCATTTCTTCGATTG+GGG 0.526646 tig0024719:+3679 None:intergenic
AGTCTACAACTTGCTTCTTG+TGG 0.530154 tig0024719:-3471 Msa1419460:CDS
TTGCTATCTGGAGATGCTGA+TGG 0.531360 tig0024719:-8834 Msa1419460:CDS
TGGTCAAATCGTCCTTGCAA+TGG 0.532210 tig0024719:-8337 Msa1419460:CDS
TTGACAACAGCTTTGTGACC+AGG 0.532936 tig0024719:+9148 None:intergenic
AAGGGCATACAGATTGGATC+CGG 0.534028 tig0024719:-8127 Msa1419460:CDS
TGCCTCTACAGTAAACCGTC+TGG 0.535874 tig0024719:-3523 Msa1419460:CDS
TTTGGTTGCATCCACGGAAG+GGG 0.535971 tig0024719:-7829 Msa1419460:CDS
AAAAGGGTATTCATTGGAGC+AGG 0.536530 tig0024719:-9359 Msa1419460:CDS
TCACATAAACTCTATGGCCA+TGG 0.537110 tig0024719:-5030 Msa1419460:CDS
CTGTTGTCAATTGCACTCAC+TGG 0.537167 tig0024719:-9135 Msa1419460:CDS
ATAATCTCGCTGCCCTCTGT+CGG 0.545530 tig0024719:-9422 Msa1419460:five_prime_UTR
GTGACAGCATTGTCTTGGGT+TGG 0.548956 tig0024719:-3705 Msa1419460:CDS
TTATCGGGCGACGGCGATGA+TGG 0.549316 tig0024719:+9441 None:intergenic
GGAGGTTCAGTAAACACAGT+TGG 0.549347 tig0024719:+5093 None:intergenic
GATGCAGATAAAATGCTTTG+TGG 0.550954 tig0024719:+7792 None:intergenic
CTACAGTAAACCGTCTGGCA+TGG 0.553191 tig0024719:-3518 Msa1419460:CDS
CTTTGGTTGCATCCACGGAA+GGG 0.553868 tig0024719:-7830 Msa1419460:CDS
AGAAGAGCAGCGGCGAAACC+CGG 0.555080 tig0024719:+3573 None:intergenic
CATCAGCTCCGCCAACAAAA+CGG 0.556187 tig0024719:+6549 None:intergenic
CCTTCCGTGGATGCAACCAA+AGG 0.557493 tig0024719:+7831 None:intergenic
CATCGGTGACTGATATAGCA+TGG 0.557572 tig0024719:-7542 Msa1419460:CDS
ATGCATACGAATTTGGAAGA+TGG 0.561651 tig0024719:-8027 Msa1419460:CDS
AAGAAAATAGCTCATTTCCA+TGG 0.561954 tig0024719:+5013 None:intergenic
TATCCAATCCTCCCATTGCA+AGG 0.562834 tig0024719:+8325 None:intergenic
TGATGGTGCTATTATTCTAT+GGG 0.564507 tig0024719:-8817 Msa1419460:CDS
GGGAACTGTCCCTTGTTGAT+GGG 0.565491 tig0024719:-8797 Msa1419460:CDS
GTTGGTTCATGGAAAGCAGT+TGG 0.566583 tig0024719:-4610 Msa1419460:CDS
TATGCCATTCCCGTTTGGCA+CGG 0.567694 tig0024719:+7992 None:intergenic
TGCCAGACGGTTTACTGTAG+AGG 0.573011 tig0024719:+3521 None:intergenic
TATAGAAGGTCCTGTCCTTG+TGG 0.573054 tig0024719:-7937 Msa1419460:CDS
CTTACACAAAAGGTTCCCTC+TGG 0.573072 tig0024719:-7573 Msa1419460:CDS
TGGAATTCTAGCTGTTGGAA+TGG 0.578033 tig0024719:-3661 Msa1419460:CDS
TACCATAGATTTAGAACCAA+CGG 0.580301 tig0024719:+8392 None:intergenic
ATCAACCCCATTTGTATCAG+AGG 0.580402 tig0024719:+5152 None:intergenic
CGACAAGACAGTGAAAATCT+GGG 0.588108 tig0024719:-3790 Msa1419460:CDS
AAACACAGTTGGAACTGCGT+CGG 0.588864 tig0024719:+5104 None:intergenic
GATCATCATAGTCTTGTCCA+TGG 0.589029 tig0024719:+7770 None:intergenic
TAGTCTTCTTGCGAGGCAGG+AGG 0.589362 tig0024719:-3880 Msa1419460:CDS
TGCGTCGGGAACAGTTTCAA+AGG 0.592159 tig0024719:+5119 None:intergenic
ACTGTCCCTTGTTGATGGGA+AGG 0.592872 tig0024719:-8793 Msa1419460:intron
TATTATCACAGCTCCGACAG+AGG 0.597124 tig0024719:+9409 None:intergenic
AGCTTTGTGACCAGGAAGAG+TGG 0.598753 tig0024719:+9156 None:intergenic
ACGATTTGACCACTACATCC+AGG 0.600975 tig0024719:+8348 None:intergenic
AGAATTGGGTCAGTCAGTGT+TGG 0.601146 tig0024719:+9491 None:intergenic
TCCTATAACAGACAAGAGGA+TGG 0.602584 tig0024719:-3609 Msa1419460:CDS
TGACAGTTGTTCATAGTAAG+GGG 0.603153 tig0024719:-6577 Msa1419460:CDS
TATATCAGCTAGCCATGACC+AGG 0.603806 tig0024719:-7499 Msa1419460:intron
TCTGGCATGGAGGAAAATTG+AGG 0.604356 tig0024719:-3505 Msa1419460:CDS
AGTCTTCTTGCGAGGCAGGA+GGG 0.605997 tig0024719:-3879 Msa1419460:CDS
TTGGGTCAGTCAGTGTTGGT+GGG 0.610458 tig0024719:+9495 None:intergenic
ATCGGTGACTGATATAGCAT+GGG 0.610638 tig0024719:-7541 Msa1419460:CDS
ACCTGTAAGCATCAATGGAG+AGG 0.613920 tig0024719:-8087 Msa1419460:CDS
CGAGGCAGGAGGGACACAAG+CGG 0.615848 tig0024719:-3869 Msa1419460:CDS
TAGCTTAACAGTGACACAGA+TGG 0.618590 tig0024719:-4572 Msa1419460:CDS
TGGATGAATGTGGTTACTGT+TGG 0.619332 tig0024719:-7720 Msa1419460:CDS
ATTATCACAGCTCCGACAGA+GGG 0.620979 tig0024719:+9410 None:intergenic
GCGGAATTGCCTGGATGTAG+TGG 0.621195 tig0024719:-8357 Msa1419460:CDS
AAGAAGAAGAGCCAGCCACA+AGG 0.621956 tig0024719:+7922 None:intergenic
AAGATTCACCTTTACTGCGG+GGG 0.621967 tig0024719:-8300 Msa1419460:CDS
TTATGCTCCATGGAAAGTCG+AGG 0.623529 tig0024719:-6672 Msa1419460:CDS
GCAGCGAGATTATCGGGCGA+CGG 0.623846 tig0024719:+9432 None:intergenic
TCCGTGGATGCAACCAAAGG+GGG 0.625596 tig0024719:+7834 None:intergenic
GTACTTCCACTGACGAGTAG+TGG 0.627306 tig0024719:-8542 Msa1419460:intron
GCAGGCCCAATCTACTGCTG+TGG 0.627705 tig0024719:-4653 Msa1419460:intron
CAATTGAAGATCAACTGGCA+TGG 0.629052 tig0024719:-5071 Msa1419460:CDS
TTAAGCTATGGGATTGCAAG+CGG 0.629501 tig0024719:+4587 None:intergenic
CAAATCGTCCTTGCAATGGG+AGG 0.631304 tig0024719:-8333 Msa1419460:CDS
AACAAGATTCACCTTTACTG+CGG 0.631780 tig0024719:-8303 Msa1419460:CDS
ATCTATGGTAGCCTTATCGA+TGG 0.631961 tig0024719:-8379 Msa1419460:CDS
TTTCAAGAGGAACAGAAACA+GGG 0.633274 tig0024719:+3313 None:intergenic
TGTGCTCTGGGATTCTATGG+TGG 0.635038 tig0024719:-7684 Msa1419460:CDS
ATAACAAGACTTCTGCAAAG+TGG 0.637064 tig0024719:+6469 None:intergenic
GATGGAAGCATTGTAGTACC+GGG 0.637075 tig0024719:-3591 Msa1419460:CDS
GGCTTACCACTACTCGTCAG+TGG 0.637295 tig0024719:+8536 None:intergenic
AAAACGGCCAAATAGAGTTG+TGG 0.638326 tig0024719:-3638 Msa1419460:CDS
AGTCTTGGTATGAGATTGCG+CGG 0.641165 tig0024719:-6631 Msa1419460:CDS
GATGTACCTTCCCATCAACA+AGG 0.642227 tig0024719:+8787 None:intergenic
ACCGATGCAAAATGACCAGA+GGG 0.642490 tig0024719:+7558 None:intergenic
GTTGCAAATTCATGGCCGTG+TGG 0.643567 tig0024719:+3822 None:intergenic
CTGAAAAGACTTCTGGTGTG+TGG 0.643767 tig0024719:-7740 Msa1419460:CDS
TCATGTTCTTGGAACCCACA+CGG 0.651148 tig0024719:-3837 Msa1419460:CDS
CTTGGGGTTGAAAATGGCGA+CGG 0.653338 tig0024719:+9268 None:intergenic
ACCACAATCCCACAAGAAAG+GGG 0.653351 tig0024719:-8654 Msa1419460:CDS
ATATCATGGCCATGAACCTG+AGG 0.654048 tig0024719:+6608 None:intergenic
TTGCAAATTCATGGCCGTGT+GGG 0.657111 tig0024719:+3823 None:intergenic
CAGTAAACCGTCTGGCATGG+AGG 0.660516 tig0024719:-3515 Msa1419460:CDS
TTCCGTGGATGCAACCAAAG+GGG 0.666647 tig0024719:+7833 None:intergenic
TCTGTCCTATAACAGACAAG+AGG 0.667351 tig0024719:-3613 Msa1419460:CDS
CACCGATGCAAAATGACCAG+AGG 0.669482 tig0024719:+7557 None:intergenic
TACGCGAACAAGAAGAGCAG+CGG 0.669620 tig0024719:+3563 None:intergenic
TTAGTTATAGTCTTCTTGCG+AGG 0.676218 tig0024719:-3887 Msa1419460:CDS
GTAATGAGAAGTCCAAACTC+CGG 0.676979 tig0024719:+8108 None:intergenic
CAAGATTCACCTTTACTGCG+GGG 0.678899 tig0024719:-8301 Msa1419460:CDS
AAACGGGAATGGCATATACA+GGG 0.680280 tig0024719:-7985 Msa1419460:CDS
TTCTGGTGTGTGGATGAATG+TGG 0.682155 tig0024719:-7730 Msa1419460:CDS
ATAGTGAACAACGTTTCTTG+GGG 0.684400 tig0024719:-9326 Msa1419460:CDS
TATGGTAGCCTTATCGATGG+CGG 0.688793 tig0024719:-8376 Msa1419460:CDS
ATGTACCTTCCCATCAACAA+GGG 0.699218 tig0024719:+8788 None:intergenic
GTCACACTACTCGTAAATGG+AGG 0.699933 tig0024719:+3723 None:intergenic
TGAGACCTCTGATACAAATG+GGG 0.710699 tig0024719:-5157 Msa1419460:CDS
CGGGAATGGCATATACAGGG+AGG 0.738065 tig0024719:-7982 Msa1419460:CDS
CATAGAATCCCAGAGCACAG+TGG 0.755507 tig0024719:+7688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAACAAAAATTAAAGATAA+AGG + tig0024719:3579-3598 None:intergenic 15.0%
!! AATCATCAATAACATTATTA+GGG + tig0024719:3897-3916 None:intergenic 15.0%
!! TAATCATCAATAACATTATT+AGG + tig0024719:3898-3917 None:intergenic 15.0%
!! ATGTTAGTAATCTATAATTA+TGG + tig0024719:4553-4572 None:intergenic 15.0%
!! TATCTGTTAATTTATCTATT+AGG - tig0024719:5373-5392 Msa1419460:intron 15.0%
!! TTTAATTAGTTGTATAAACT+TGG - tig0024719:6002-6021 Msa1419460:intron 15.0%
!! AAATACTTGAATAAAACTAT+TGG - tig0024719:6613-6632 Msa1419460:CDS 15.0%
!! TAAATAGGATACAATAATAT+AGG - tig0024719:6761-6780 Msa1419460:intron 15.0%
!! AAATAGGATACAATAATATA+GGG - tig0024719:6762-6781 Msa1419460:intron 15.0%
!! AATTAATGTATATCAAATGT+TGG + tig0024719:8013-8032 None:intergenic 15.0%
!! TACAGATATATCAAAAAATA+AGG + tig0024719:9418-9437 None:intergenic 15.0%
!!! TAATAATTCATATTTTCAAG+AGG + tig0024719:9505-9524 None:intergenic 15.0%
!!! TTCCTTATAGTTTTCTTTTT+GGG - tig0024719:4583-4602 Msa1419460:CDS 20.0%
!!! ATGATGTATTTTTAAATACC+TGG + tig0024719:5324-5343 None:intergenic 20.0%
!!! AGACATTTTCGAATTATAAA+AGG + tig0024719:5420-5439 None:intergenic 20.0%
!! TAGATGATCTATTAACTTAT+TGG - tig0024719:5849-5868 Msa1419460:intron 20.0%
!!! TTTAAAATGCCACATTTTAT+TGG - tig0024719:5905-5924 Msa1419460:intron 20.0%
!! TTATACAACTAATTAAACCA+TGG + tig0024719:5999-6018 None:intergenic 20.0%
!!! AACGTTTTCAAAAATGATAA+TGG + tig0024719:6305-6324 None:intergenic 20.0%
!!! TTTTTTATGTGACAAATAAC+AGG - tig0024719:6471-6490 Msa1419460:CDS 20.0%
!! AATAGGATACAATAATATAG+GGG - tig0024719:6763-6782 Msa1419460:intron 20.0%
!!! TCTTTTCAATTCAATTTCTT+TGG - tig0024719:7340-7359 Msa1419460:intron 20.0%
!! TAACATCAGAAAATAAAACA+CGG + tig0024719:7527-7546 None:intergenic 20.0%
!! AAACAATTATATATCTGTTC+TGG - tig0024719:7561-7580 Msa1419460:CDS 20.0%
!! ATAAATAATTTATGCATTGC+AGG - tig0024719:8131-8150 Msa1419460:CDS 20.0%
!! TAATAATAGTAATGCAGAAA+AGG + tig0024719:8381-8400 None:intergenic 20.0%
!! AAATACTAATCACTTAATTG+TGG - tig0024719:8873-8892 Msa1419460:intron 20.0%
!!! GAATATTTTTTTACTCCTAT+AGG - tig0024719:9443-9462 Msa1419460:five_prime_UTR 20.0%
!!! TGAAGTATTTTTTGCTAAAT+AGG - tig0024719:9539-9558 Msa1419460:five_prime_UTR 20.0%
! ATAATAATGCATATCGAAGA+AGG - tig0024719:3410-3429 Msa1419460:three_prime_UTR 25.0%
!!! TGAATAGAAATTTGCTACTT+GGG + tig0024719:3695-3714 None:intergenic 25.0%
!!! TTGAATAGAAATTTGCTACT+TGG + tig0024719:3696-3715 None:intergenic 25.0%
! AGTAGCAAATTTCTATTCAA+AGG - tig0024719:3696-3715 Msa1419460:CDS 25.0%
!! ATCATAGAGAGTATAGAATT+TGG - tig0024719:3763-3782 Msa1419460:CDS 25.0%
!! ACTTGATAGCTTTCATTTAA+TGG - tig0024719:4072-4091 Msa1419460:intron 25.0%
!!! TCTATTTTTTGCGTTTATAG+TGG - tig0024719:4108-4127 Msa1419460:intron 25.0%
!! TACATGTATTGATGGAATTA+TGG - tig0024719:4172-4191 Msa1419460:intron 25.0%
! ATAACAGTAAACATTGTCAT+TGG + tig0024719:4300-4319 None:intergenic 25.0%
!! GTTCCTTATAGTTTTCTTTT+TGG - tig0024719:4582-4601 Msa1419460:CDS 25.0%
!! AGAGGTAAACAATATTTTTC+TGG - tig0024719:4733-4752 Msa1419460:intron 25.0%
! CTAAAATTGAATCTCCATTT+GGG + tig0024719:5153-5172 None:intergenic 25.0%
!!! TATTTTTAAATACCTGGTCA+TGG + tig0024719:5318-5337 None:intergenic 25.0%
!! AATCTATAGTAAAGCTTTTG+TGG + tig0024719:5352-5371 None:intergenic 25.0%
! TGCGTAGATAAACAAAAAAA+GGG + tig0024719:5798-5817 None:intergenic 25.0%
! ATGCGTAGATAAACAAAAAA+AGG + tig0024719:5799-5818 None:intergenic 25.0%
!! GTGGCATTTTAAACATTTTT+AGG + tig0024719:5898-5917 None:intergenic 25.0%
! TTGTCATTACCAATAAAATG+TGG + tig0024719:5917-5936 None:intergenic 25.0%
! CTGTCATACAATTTATATCA+TGG + tig0024719:6211-6230 None:intergenic 25.0%
! TCAACAAATTAACTAACCTT+GGG + tig0024719:6438-6457 None:intergenic 25.0%
! TTCAACAAATTAACTAACCT+TGG + tig0024719:6439-6458 None:intergenic 25.0%
! ACTTGAATAAAACTATTGGT+TGG - tig0024719:6617-6636 Msa1419460:CDS 25.0%
! TAGTAAATAGTTACAGCTTA+TGG - tig0024719:6654-6673 Msa1419460:CDS 25.0%
! TAAAGGTGAATTAGTAGTTA+AGG - tig0024719:6705-6724 Msa1419460:intron 25.0%
! TAGGAATATTGTGTGTAAAT+AGG - tig0024719:6746-6765 Msa1419460:intron 25.0%
!! TATTTCACATAGCGTATTTT+TGG - tig0024719:7234-7253 Msa1419460:intron 25.0%
!! ACTTTTTATTAACAGCTGTT+AGG + tig0024719:7368-7387 None:intergenic 25.0%
! TAATAAAAAGTTACGAGAGT+TGG - tig0024719:7377-7396 Msa1419460:intron 25.0%
! AATAAAAAGTTACGAGAGTT+GGG - tig0024719:7378-7397 Msa1419460:intron 25.0%
! AACATCAGAAAATAAAACAC+GGG + tig0024719:7526-7545 None:intergenic 25.0%
! ATCCTCAAATTTACAAACTT+TGG + tig0024719:7600-7619 None:intergenic 25.0%
! ATCTTTCTGTCAAATTATAC+AGG + tig0024719:7885-7904 None:intergenic 25.0%
!! TCTTACAATTTTCTTGACTA+TGG - tig0024719:7930-7949 Msa1419460:CDS 25.0%
!!! GAAAAAAGAGCATTAGAAAT+TGG + tig0024719:7991-8010 None:intergenic 25.0%
! TACATTAATTTCAACCAACT+TGG - tig0024719:8023-8042 Msa1419460:CDS 25.0%
!! GCTGATATTTCTACATTATT+TGG - tig0024719:8098-8117 Msa1419460:CDS 25.0%
!!! TTTTTTTTGGTGACTTTCTT+TGG - tig0024719:8408-8427 Msa1419460:CDS 25.0%
!! ATTAAGTTGTTCATTCAAAC+AGG - tig0024719:8775-8794 Msa1419460:intron 25.0%
!! TTAAGTTGTTCATTCAAACA+GGG - tig0024719:8776-8795 Msa1419460:intron 25.0%
! AAGACTATAACTAATTTCAC+TGG + tig0024719:8909-8928 None:intergenic 25.0%
!!! TTTTTTACTCCTATAGGTAT+AGG - tig0024719:9449-9468 Msa1419460:five_prime_UTR 25.0%
! TTAGCAAAAAATACTTCATG+TGG + tig0024719:9537-9556 None:intergenic 25.0%
GAAGAAGAAGAAAGAGAATT+GGG + tig0024719:3328-3347 None:intergenic 30.0%
AGAAGAAGAAGAAAGAGAAT+TGG + tig0024719:3329-3348 None:intergenic 30.0%
AATAGTGAACAACGTTTCTT+GGG - tig0024719:3475-3494 Msa1419460:CDS 30.0%
AAGATAAAGGATGAGTGAAA+AGG + tig0024719:3566-3585 None:intergenic 30.0%
GTACACTATATAAGTGCTTA+TGG - tig0024719:3718-3737 Msa1419460:CDS 30.0%
AGATTGTTTGAGAGAGTTTA+TGG + tig0024719:3824-3843 None:intergenic 30.0%
TGTGTATACAAAGTAAGAGA+GGG + tig0024719:3924-3943 None:intergenic 30.0%
TGTATACACAGCAAAAGAAT+TGG - tig0024719:3934-3953 Msa1419460:intron 30.0%
!! TGATGGTGCTATTATTCTAT+GGG - tig0024719:3985-4004 Msa1419460:intron 30.0%
!!! ATTTTTTGCGTTTATAGTGG+AGG - tig0024719:4111-4130 Msa1419460:intron 30.0%
AATTATGGTTTCTCAAACTG+AGG - tig0024719:4187-4206 Msa1419460:intron 30.0%
AGATGGTACTGTTTGTATAT+GGG - tig0024719:4232-4251 Msa1419460:intron 30.0%
ACATTGTCATTGGAAAAGTA+GGG + tig0024719:4290-4309 None:intergenic 30.0%
AACATTGTCATTGGAAAAGT+AGG + tig0024719:4291-4310 None:intergenic 30.0%
GATATTTAGTCCATCATTCT+AGG - tig0024719:4355-4374 Msa1419460:intron 30.0%
! TACCATAGATTTAGAACCAA+CGG + tig0024719:4413-4432 None:intergenic 30.0%
CTCCCAAAAAGAAAACTATA+AGG + tig0024719:4588-4607 None:intergenic 30.0%
! ATAGGCAGAAGAAAAAGTAT+AGG + tig0024719:4625-4644 None:intergenic 30.0%
TACATTCATGTGAGCTAAAA+GGG - tig0024719:4657-4676 Msa1419460:intron 30.0%
AAGACAAATGCATACGAATT+TGG - tig0024719:4768-4787 Msa1419460:intron 30.0%
AGCTTATCATCCTATATAGA+AGG - tig0024719:4851-4870 Msa1419460:intron 30.0%
! TCCTTAGAATCTCTTTTGAT+TGG - tig0024719:4911-4930 Msa1419460:intron 30.0%
TCCAATCAAAAGAGATTCTA+AGG + tig0024719:4915-4934 None:intergenic 30.0%
GCTAAAATTGAATCTCCATT+TGG + tig0024719:5154-5173 None:intergenic 30.0%
!! TCAATTTTAGCACATGGATA+TGG - tig0024719:5163-5182 Msa1419460:CDS 30.0%
! TTCCATCTTTGGAAAAATGT+TGG - tig0024719:5193-5212 Msa1419460:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - tig0024719:5504-5523 Msa1419460:intron 30.0%
TCTCGAGTATGTATCTATTT+CGG - tig0024719:5533-5552 Msa1419460:intron 30.0%
GATACAAAACTGAATCCAAT+TGG - tig0024719:5504-5523 Msa1419460:intron 30.0%
! TCTCGAGTATGTATCTATTT+TGG - tig0024719:5533-5552 Msa1419460:intron 30.0%
AGATTCATCATTATGAATCC+GGG + tig0024719:5682-5701 None:intergenic 30.0%
GAGATTCATCATTATGAATC+CGG + tig0024719:5683-5702 None:intergenic 30.0%
AGTGATTCATTAGAGTGAAT+CGG + tig0024719:5722-5741 None:intergenic 30.0%
!! TACAGTGTTGACAAAAAAAG+TGG + tig0024719:5767-5786 None:intergenic 30.0%
GCGTAGATAAACAAAAAAAG+GGG + tig0024719:5797-5816 None:intergenic 30.0%
GACAAATTCAAGATAACAAG+TGG + tig0024719:6061-6080 None:intergenic 30.0%
TATGACAGTTGTTCATAGTA+AGG - tig0024719:6223-6242 Msa1419460:intron 30.0%
ATGACAGTTGTTCATAGTAA+GGG - tig0024719:6224-6243 Msa1419460:intron 30.0%
! TTGACAAACATCCAGATTTT+GGG - tig0024719:6368-6387 Msa1419460:intron 30.0%
GAGATCACATTGTTTAATGT+TGG - tig0024719:6502-6521 Msa1419460:CDS 30.0%
TAGTAGTTAAGGTTAGTAGT+TGG - tig0024719:6716-6735 Msa1419460:intron 30.0%
CACACTGATATGTAAATACT+TGG - tig0024719:6789-6808 Msa1419460:intron 30.0%
!! CTCTTTATTTCTGCTATTGA+CGG + tig0024719:7015-7034 None:intergenic 30.0%
! ACATGATCTATTTTCACCAT+AGG - tig0024719:7073-7092 Msa1419460:intron 30.0%
ATTGGAAGCTTTACGTATTA+TGG + tig0024719:7140-7159 None:intergenic 30.0%
!! GAGCATCGGTAATAATATAT+TGG + tig0024719:7158-7177 None:intergenic 30.0%
GAAATAAGTCAAAAAGGGAA+TGG + tig0024719:7186-7205 None:intergenic 30.0%
GGGTTGAAATAAGTCAAAAA+GGG + tig0024719:7191-7210 None:intergenic 30.0%
AGGGTTGAAATAAGTCAAAA+AGG + tig0024719:7192-7211 None:intergenic 30.0%
ATGTTATCAATAGCAGATTG+CGG + tig0024719:7274-7293 None:intergenic 30.0%
AACAAAACCATAGTCATAGA+AGG - tig0024719:7485-7504 Msa1419460:intron 30.0%
ACAAAACCATAGTCATAGAA+GGG - tig0024719:7486-7505 Msa1419460:intron 30.0%
ATATATCTGTTCTGGTGTAT+TGG - tig0024719:7569-7588 Msa1419460:CDS 30.0%
CTCCAAAGTTTGTAAATTTG+AGG - tig0024719:7595-7614 Msa1419460:CDS 30.0%
AAGAAAATAGCTCATTTCCA+TGG + tig0024719:7792-7811 None:intergenic 30.0%
TTCTTTATGCTGTGATCATA+AGG - tig0024719:7807-7826 Msa1419460:CDS 30.0%
TCTTTATGCTGTGATCATAA+GGG - tig0024719:7808-7827 Msa1419460:CDS 30.0%
TATGGAACTGAATTGAACAT+TGG - tig0024719:8464-8483 Msa1419460:intron 30.0%
AATCATTTATACTCTCAGTC+AGG + tig0024719:8515-8534 None:intergenic 30.0%
! ATCACTTAATTGTGGTTTGT+AGG - tig0024719:8881-8900 Msa1419460:intron 30.0%
TGATGAAGATTTCTTCTCTA+CGG + tig0024719:9038-9057 None:intergenic 30.0%
ATTCCATCATTTCTTCGATT+GGG + tig0024719:9127-9146 None:intergenic 30.0%
AATTCCATCATTTCTTCGAT+TGG + tig0024719:9128-9147 None:intergenic 30.0%
!!! TGGGAAATTTTAGGGCTTTT+TGG - tig0024719:3275-3294 Msa1419460:three_prime_UTR 35.0%
!!! GGGAAATTTTAGGGCTTTTT+GGG - tig0024719:3276-3295 Msa1419460:three_prime_UTR 35.0%
AAGAAGGAGTTGAAGTGAAA+AGG - tig0024719:3426-3445 Msa1419460:exon 35.0%
AGAAGGAGTTGAAGTGAAAA+GGG - tig0024719:3427-3446 Msa1419460:exon 35.0%
!! GAAGTGAAAAGGGTATTCAT+TGG - tig0024719:3437-3456 Msa1419460:CDS 35.0%
GAATAGTGAACAACGTTTCT+TGG - tig0024719:3474-3493 Msa1419460:CDS 35.0%
ATAGTGAACAACGTTTCTTG+GGG - tig0024719:3476-3495 Msa1419460:CDS 35.0%
!!! GCTTCTGGTTTTGTTTCTTT+TGG - tig0024719:3500-3519 Msa1419460:CDS 35.0%
CTGTGTATACAAAGTAAGAG+AGG + tig0024719:3925-3944 None:intergenic 35.0%
!! GAACTGCATTATTTGCTATC+TGG - tig0024719:3956-3975 Msa1419460:intron 35.0%
!! CTGATGGTGCTATTATTCTA+TGG - tig0024719:3984-4003 Msa1419460:intron 35.0%
AAAGGGGTTACATGTATTGA+TGG - tig0024719:4164-4183 Msa1419460:intron 35.0%
TTTGCATCTACTTCTTCAGA+TGG - tig0024719:4215-4234 Msa1419460:intron 35.0%
CAGATGGTACTGTTTGTATA+TGG - tig0024719:4231-4250 Msa1419460:intron 35.0%
TTTACAGTCACCTAGAATGA+TGG + tig0024719:4368-4387 None:intergenic 35.0%
TGACTGTAAATTATCATGCC+TGG - tig0024719:4378-4397 Msa1419460:intron 35.0%
!! TTCCGTTGGTTCTAAATCTA+TGG - tig0024719:4408-4427 Msa1419460:intron 35.0%
AACAAGATTCACCTTTACTG+CGG - tig0024719:4499-4518 Msa1419460:CDS 35.0%
AATGTACAAACTGGGTTCAT+AGG + tig0024719:4643-4662 None:intergenic 35.0%
CTCACATGAATGTACAAACT+GGG + tig0024719:4651-4670 None:intergenic 35.0%
GTACATTCATGTGAGCTAAA+AGG - tig0024719:4656-4675 Msa1419460:intron 35.0%
TCATTACCTGTAAGCATCAA+TGG - tig0024719:4710-4729 Msa1419460:intron 35.0%
ATGCATACGAATTTGGAAGA+TGG - tig0024719:4775-4794 Msa1419460:intron 35.0%
!! ATCTCTTTTGATTGGACATG+AGG - tig0024719:4919-4938 Msa1419460:intron 35.0%
!! TTTTGATTGGACATGAGGAT+TGG - tig0024719:4924-4943 Msa1419460:intron 35.0%
TTTGATTGGACATGAGGATT+GGG - tig0024719:4925-4944 Msa1419460:intron 35.0%
ACATGAGGATTGGGTATATT+CGG - tig0024719:4934-4953 Msa1419460:intron 35.0%
ATTGGGTATATTCGGTTGAA+TGG - tig0024719:4942-4961 Msa1419460:intron 35.0%
!! AATGCTTTGTGGTTGATAAC+AGG + tig0024719:5002-5021 None:intergenic 35.0%
GATGCAGATAAAATGCTTTG+TGG + tig0024719:5013-5032 None:intergenic 35.0%
! AAGCATTTTATCTGCATCCA+TGG - tig0024719:5015-5034 Msa1419460:CDS 35.0%
!! GGAGATTCAATTTTAGCACA+TGG - tig0024719:5157-5176 Msa1419460:CDS 35.0%
!! ATTTTAGCACATGGATATGG+TGG - tig0024719:5166-5185 Msa1419460:CDS 35.0%
! CACCAACATTTTTCCAAAGA+TGG + tig0024719:5198-5217 None:intergenic 35.0%
!! AAAATGTTGGTGATGACAAC+TGG - tig0024719:5206-5225 Msa1419460:intron 35.0%
CAGTGAGTTAGACAACATAT+AGG + tig0024719:5444-5463 None:intergenic 35.0%
TACTCGAGATTTGTACCAAT+TGG + tig0024719:5522-5541 None:intergenic 35.0%
AGATTCATCATGATGAATCC+GGG + tig0024719:5580-5599 None:intergenic 35.0%
GAGATTCATCATGATGAATC+CGG + tig0024719:5581-5600 None:intergenic 35.0%
TACTCGAGATTAGTACCAAT+TGG + tig0024719:5624-5643 None:intergenic 35.0%
GATTCATCATTATGAATCCG+GGG + tig0024719:5681-5700 None:intergenic 35.0%
TGATTCATTAGAGTGAATCG+GGG + tig0024719:5720-5739 None:intergenic 35.0%
GTGATTCATTAGAGTGAATC+GGG + tig0024719:5721-5740 None:intergenic 35.0%
AGATAAACAAAAAAAGGGGC+TGG + tig0024719:5793-5812 None:intergenic 35.0%
GAATCTCGATTTAACAACCA+TGG - tig0024719:5979-5998 Msa1419460:intron 35.0%
!! AGTTGTCTGCAATTTTGACA+CGG + tig0024719:6105-6124 None:intergenic 35.0%
CAACTAGAATTTATGCTCCA+TGG - tig0024719:6120-6139 Msa1419460:intron 35.0%
TGACAGTTGTTCATAGTAAG+GGG - tig0024719:6225-6244 Msa1419460:intron 35.0%
ATAACAAGACTTCTGCAAAG+TGG + tig0024719:6336-6355 None:intergenic 35.0%
! CTTGACAAACATCCAGATTT+TGG - tig0024719:6367-6386 Msa1419460:intron 35.0%
ACATATTTGCACCCAAAATC+TGG + tig0024719:6382-6401 None:intergenic 35.0%
CAAAAACCTATTTATGCCCA+AGG - tig0024719:6419-6438 Msa1419460:CDS 35.0%
AACTAACCTTGGGCATAAAT+AGG + tig0024719:6428-6447 None:intergenic 35.0%
TCTTTCTCATTGTTATCTGC+TGG - tig0024719:6528-6547 Msa1419460:CDS 35.0%
AACTTTGACTGCAAAGGATT+TGG - tig0024719:6555-6574 Msa1419460:CDS 35.0%
CATGTTGCTATGCAGAATAA+AGG - tig0024719:6688-6707 Msa1419460:intron 35.0%
AGTTAAGGTTAGTAGTTGGT+TGG - tig0024719:6720-6739 Msa1419460:intron 35.0%
! GTTAGTAGTTGGTTGGTTAT+AGG - tig0024719:6727-6746 Msa1419460:intron 35.0%
! ATACTTGGTGAATAGACCAT+TGG - tig0024719:6804-6823 Msa1419460:intron 35.0%
TTGTCAATTAGTGGCAATAG+TGG - tig0024719:6859-6878 Msa1419460:intron 35.0%
! CTCTTCACTTTAGTTTCCTA+TGG + tig0024719:7092-7111 None:intergenic 35.0%
AGGAAACTAAAGTGAAGAGT+TGG - tig0024719:7093-7112 Msa1419460:intron 35.0%
! CTATTGATAACATTGCTCGT+AGG - tig0024719:7281-7300 Msa1419460:intron 35.0%
TGCATCTCATATTGAGGATA+TGG - tig0024719:7427-7446 Msa1419460:intron 35.0%
GCATCTCATATTGAGGATAT+GGG - tig0024719:7428-7447 Msa1419460:intron 35.0%
ATGAGACCTCTGATACAAAT+GGG - tig0024719:7644-7663 Msa1419460:CDS 35.0%
CCATAGAGTTTATGTGATTC+AGG + tig0024719:7769-7788 None:intergenic 35.0%
CCTGAATCACATAAACTCTA+TGG - tig0024719:7766-7785 Msa1419460:CDS 35.0%
TAGAGCAGTAAAGTGTACAA+CGG + tig0024719:8076-8095 None:intergenic 35.0%
TGATTGTAAACACAGAGAAC+TGG + tig0024719:8302-8321 None:intergenic 35.0%
GTGTTTACAATCACAACAAC+AGG - tig0024719:8309-8328 Msa1419460:CDS 35.0%
! TGGTTGACATTTGTTGAGTT+TGG - tig0024719:8428-8447 Msa1419460:CDS 35.0%
! TAAGCGCTTGTGATTTTGTT+CGG - tig0024719:8570-8589 Msa1419460:CDS 35.0%
ACTTATGACATGTCCATAAG+CGG - tig0024719:8610-8629 Msa1419460:CDS 35.0%
AATAACCTGAAAACCGCTTA+TGG + tig0024719:8626-8645 None:intergenic 35.0%
AACGCGTAAAATAAATGCCT+GGG + tig0024719:8803-8822 None:intergenic 35.0%
AAACGCGTAAAATAAATGCC+TGG + tig0024719:8804-8823 None:intergenic 35.0%
TTAGTTATAGTCTTCTTGCG+AGG - tig0024719:8915-8934 Msa1419460:intron 35.0%
TTCCATCATTTCTTCGATTG+GGG + tig0024719:9126-9145 None:intergenic 35.0%
! AATGATGGAATTCTAGCTGT+TGG - tig0024719:9136-9155 Msa1419460:CDS 35.0%
! GTAGAGGCATGACATATAAA+AGG + tig0024719:9268-9287 None:intergenic 35.0%
GTTAGCATACCTATACCTAT+AGG + tig0024719:9461-9480 None:intergenic 35.0%
TTTCAAGAGGAACAGAAACA+GGG + tig0024719:9492-9511 None:intergenic 35.0%
!! TTTTCAAGAGGAACAGAAAC+AGG + tig0024719:9493-9512 None:intergenic 35.0%
CCTAAAATTTCCCACAGTAC+CGG + tig0024719:3269-3288 None:intergenic 40.0%
! CGGTACTGTGGGAAATTTTA+GGG - tig0024719:3267-3286 Msa1419460:three_prime_UTR 40.0%
!! AAAAGGGTATTCATTGGAGC+AGG - tig0024719:3443-3462 Msa1419460:CDS 40.0%
AGTAACCTTGGGGTTGAAAA+TGG + tig0024719:3543-3562 None:intergenic 40.0%
AGTGAAAAGGAGTAACCTTG+GGG + tig0024719:3553-3572 None:intergenic 40.0%
GAGTGAAAAGGAGTAACCTT+GGG + tig0024719:3554-3573 None:intergenic 40.0%
TGAGTGAAAAGGAGTAACCT+TGG + tig0024719:3555-3574 None:intergenic 40.0%
TCAAAATTTGAGCACTCTGC+AGG + tig0024719:3626-3645 None:intergenic 40.0%
!! CAAATTTTGACCACTCTTCC+TGG - tig0024719:3636-3655 Msa1419460:CDS 40.0%
ATGTACCTTCCCATCAACAA+GGG + tig0024719:4017-4036 None:intergenic 40.0%
TACCACAATCCCACAAGAAA+GGG - tig0024719:4147-4166 Msa1419460:intron 40.0%
ACATGTAACCCCTTTCTTGT+GGG + tig0024719:4159-4178 None:intergenic 40.0%
TACATGTAACCCCTTTCTTG+TGG + tig0024719:4160-4179 None:intergenic 40.0%
!! ATCTATGGTAGCCTTATCGA+TGG - tig0024719:4423-4442 Msa1419460:intron 40.0%
ACAAGATTCACCTTTACTGC+GGG - tig0024719:4500-4519 Msa1419460:CDS 40.0%
GCTCACATGAATGTACAAAC+TGG + tig0024719:4652-4671 None:intergenic 40.0%
! AGCTAAAAGGGCATACAGAT+TGG - tig0024719:4669-4688 Msa1419460:intron 40.0%
GTAATGAGAAGTCCAAACTC+CGG + tig0024719:4697-4716 None:intergenic 40.0%
AAACGGGAATGGCATATACA+GGG - tig0024719:4817-4836 Msa1419460:intron 40.0%
AAGGACAGGACCTTCTATAT+AGG + tig0024719:4864-4883 None:intergenic 40.0%
!! GATCATCATAGTCTTGTCCA+TGG + tig0024719:5035-5054 None:intergenic 40.0%
TGGACAAGACTATGATGATC+TGG - tig0024719:5035-5054 Msa1419460:CDS 40.0%
TGGATGAATGTGGTTACTGT+TGG - tig0024719:5082-5101 Msa1419460:CDS 40.0%
! TGACAACTGGCTTACACAAA+AGG - tig0024719:5219-5238 Msa1419460:intron 40.0%
ATCGGTGACTGATATAGCAT+GGG - tig0024719:5261-5280 Msa1419460:intron 40.0%
TGAATCTCATCTTGAATCCC+CGG - tig0024719:5559-5578 Msa1419460:intron 40.0%
GATTCATCATGATGAATCCG+GGG + tig0024719:5579-5598 None:intergenic 40.0%
TGAATCTCATCTTGAATCCC+CGG - tig0024719:5559-5578 Msa1419460:intron 40.0%
GGTGTTAACTTTGACTGCAA+AGG - tig0024719:6549-6568 Msa1419460:CDS 40.0%
TCGTAGGTAGTTGACTGATA+GGG - tig0024719:6586-6605 Msa1419460:CDS 40.0%
TACAGCTTATGGTAAGCTGT+TGG - tig0024719:6665-6684 Msa1419460:CDS 40.0%
!! ACCATTGGCTCTTTGTAGAA+GGG - tig0024719:6819-6838 Msa1419460:intron 40.0%
TAGAAGGGAAACCTTAGAGA+CGG - tig0024719:6834-6853 Msa1419460:intron 40.0%
AATTGACAACTCCGTCTCTA+AGG + tig0024719:6848-6867 None:intergenic 40.0%
TTATCCTAGCTTCGCCATTA+TGG - tig0024719:6944-6963 Msa1419460:intron 40.0%
TAGTGCACACATGGATTCTT+TGG + tig0024719:7052-7071 None:intergenic 40.0%
GATCATGTTTAGTGCACACA+TGG + tig0024719:7061-7080 None:intergenic 40.0%
GAAATAGCAGCTAGAGTTGT+GGG + tig0024719:7220-7239 None:intergenic 40.0%
TGAAATAGCAGCTAGAGTTG+TGG + tig0024719:7221-7240 None:intergenic 40.0%
GGACATATTGTCTACGTACT+TGG - tig0024719:7399-7418 Msa1419460:intron 40.0%
GATGTCTGCATCTCATATTG+AGG - tig0024719:7421-7440 Msa1419460:intron 40.0%
ATATGGGTCCATCCAAATGA+TGG - tig0024719:7444-7463 Msa1419460:intron 40.0%
TATCACTACCAGCCATCATT+TGG + tig0024719:7459-7478 None:intergenic 40.0%
CATGAGACCTCTGATACAAA+TGG - tig0024719:7643-7662 Msa1419460:CDS 40.0%
TGAGACCTCTGATACAAATG+GGG - tig0024719:7645-7664 Msa1419460:CDS 40.0%
ATCAACCCCATTTGTATCAG+AGG + tig0024719:7653-7672 None:intergenic 40.0%
TCTGATACAAATGGGGTTGA+TGG - tig0024719:7652-7671 Msa1419460:CDS 40.0%
ACCTCCAATTGAAGATCAAC+TGG - tig0024719:7726-7745 Msa1419460:CDS 40.0%
CATGCCAGTTGATCTTCAAT+TGG + tig0024719:7733-7752 None:intergenic 40.0%
CAATTGAAGATCAACTGGCA+TGG - tig0024719:7731-7750 Msa1419460:CDS 40.0%
TCACATAAACTCTATGGCCA+TGG - tig0024719:7772-7791 Msa1419460:CDS 40.0%
! GCTTGTTGCTTCTTCATGTA+AGG - tig0024719:7834-7853 Msa1419460:CDS 40.0%
TCATGTAAGGTATGCACTGT+TGG - tig0024719:7847-7866 Msa1419460:CDS 40.0%
! ATGCACTGTTGGTCTAACTA+TGG - tig0024719:7858-7877 Msa1419460:CDS 40.0%
CAAAACGATCTAAGCCAAGT+TGG + tig0024719:8040-8059 None:intergenic 40.0%
! CAACTTGGCTTAGATCGTTT+TGG - tig0024719:8038-8057 Msa1419460:CDS 40.0%
TAAAGTGTACAACGGTGAGA+CGG + tig0024719:8068-8087 None:intergenic 40.0%
TTAAGCTATGGGATTGCAAG+CGG + tig0024719:8218-8237 None:intergenic 40.0%
! CTGTGTCACTGTTAAGCTAT+GGG + tig0024719:8229-8248 None:intergenic 40.0%
! TCTGTGTCACTGTTAAGCTA+TGG + tig0024719:8230-8249 None:intergenic 40.0%
TAGCTTAACAGTGACACAGA+TGG - tig0024719:8230-8249 Msa1419460:intron 40.0%
ACAGATATGCTTGCATTCTG+AGG + tig0024719:8353-8372 None:intergenic 40.0%
! TTTGGAGCACATCGATGTTA+TGG - tig0024719:8446-8465 Msa1419460:intron 40.0%
! AAGCGCTTGTGATTTTGTTC+GGG - tig0024719:8571-8590 Msa1419460:CDS 40.0%
! ATTTTGTTCGGGAGAGCTTA+TGG - tig0024719:8582-8601 Msa1419460:CDS 40.0%
ACGCGTAAAATAAATGCCTG+GGG + tig0024719:8802-8821 None:intergenic 40.0%
GGATTATCTGGTCATGTTCT+TGG - tig0024719:8954-8973 Msa1419460:intron 40.0%
GTGAACCTGTTGCAAATTCA+TGG + tig0024719:8991-9010 None:intergenic 40.0%
CGACAAGACAGTGAAAATCT+GGG - tig0024719:9012-9031 Msa1419460:intron 40.0%
TAGTGTGACAGCATTGTCTT+GGG - tig0024719:9093-9112 Msa1419460:intron 40.0%
! TGGAATTCTAGCTGTTGGAA+TGG - tig0024719:9141-9160 Msa1419460:CDS 40.0%
CTAGCTGTTGGAATGGAAAA+CGG - tig0024719:9148-9167 Msa1419460:CDS 40.0%
AAAACGGCCAAATAGAGTTG+TGG - tig0024719:9164-9183 Msa1419460:CDS 40.0%
ACAGACTCCACAACTCTATT+TGG + tig0024719:9174-9193 None:intergenic 40.0%
TCTGTCCTATAACAGACAAG+AGG - tig0024719:9189-9208 Msa1419460:intron 40.0%
TCCTATAACAGACAAGAGGA+TGG - tig0024719:9193-9212 Msa1419460:intron 40.0%
TCCATCCTCTTGTCTGTTAT+AGG + tig0024719:9197-9216 None:intergenic 40.0%
! AGTCTACAACTTGCTTCTTG+TGG - tig0024719:9331-9350 Msa1419460:CDS 40.0%
! CCGGTACTGTGGGAAATTTT+AGG - tig0024719:3266-3285 Msa1419460:three_prime_UTR 45.0%
AGAATTGGGTCAGTCAGTGT+TGG + tig0024719:3314-3333 None:intergenic 45.0%
ATTATCACAGCTCCGACAGA+GGG + tig0024719:3395-3414 None:intergenic 45.0%
TATTATCACAGCTCCGACAG+AGG + tig0024719:3396-3415 None:intergenic 45.0%
! TTGACAACAGCTTTGTGACC+AGG + tig0024719:3657-3676 None:intergenic 45.0%
CTGTTGTCAATTGCACTCAC+TGG - tig0024719:3667-3686 Msa1419460:CDS 45.0%
TTGCTATCTGGAGATGCTGA+TGG - tig0024719:3968-3987 Msa1419460:intron 45.0%
GATGTACCTTCCCATCAACA+AGG + tig0024719:4018-4037 None:intergenic 45.0%
GTACCACAATCCCACAAGAA+AGG - tig0024719:4146-4165 Msa1419460:intron 45.0%
ACCACAATCCCACAAGAAAG+GGG - tig0024719:4148-4167 Msa1419460:intron 45.0%
AACCAACGGAAAAAGAGTCC+AGG + tig0024719:4399-4418 None:intergenic 45.0%
!! TATGGTAGCCTTATCGATGG+CGG - tig0024719:4426-4445 Msa1419460:intron 45.0%
ACGATTTGACCACTACATCC+AGG + tig0024719:4457-4476 None:intergenic 45.0%
TGGTCAAATCGTCCTTGCAA+TGG - tig0024719:4465-4484 Msa1419460:intron 45.0%
GGTCAAATCGTCCTTGCAAT+GGG - tig0024719:4466-4485 Msa1419460:intron 45.0%
TATCCAATCCTCCCATTGCA+AGG + tig0024719:4480-4499 None:intergenic 45.0%
CAAGATTCACCTTTACTGCG+GGG - tig0024719:4501-4520 Msa1419460:CDS 45.0%
AAGATTCACCTTTACTGCGG+GGG - tig0024719:4502-4521 Msa1419460:CDS 45.0%
TGGCGACAAAGATACCTTTC+CGG + tig0024719:4533-4552 None:intergenic 45.0%
! AAGGGCATACAGATTGGATC+CGG - tig0024719:4675-4694 Msa1419460:intron 45.0%
TACAGATTGGATCCGGAGTT+TGG - tig0024719:4682-4701 Msa1419460:intron 45.0%
ACCTGTAAGCATCAATGGAG+AGG - tig0024719:4715-4734 Msa1419460:intron 45.0%
ACCTCTCCATTGATGCTTAC+AGG + tig0024719:4719-4738 None:intergenic 45.0%
CTGTATATGCCATTCCCGTT+TGG + tig0024719:4818-4837 None:intergenic 45.0%
CAAACGGGAATGGCATATAC+AGG - tig0024719:4816-4835 Msa1419460:intron 45.0%
TATAGAAGGTCCTGTCCTTG+TGG - tig0024719:4865-4884 Msa1419460:intron 45.0%
! CACACACCAGAAGTCTTTTC+AGG + tig0024719:5064-5083 None:intergenic 45.0%
CTGAAAAGACTTCTGGTGTG+TGG - tig0024719:5062-5081 Msa1419460:CDS 45.0%
TTCTGGTGTGTGGATGAATG+TGG - tig0024719:5072-5091 Msa1419460:CDS 45.0%
TGGGATTCTATGGTGGTCAT+TGG - tig0024719:5125-5144 Msa1419460:CDS 45.0%
!! ATGGTGGATCGTTCCATCTT+TGG - tig0024719:5182-5201 Msa1419460:intron 45.0%
CTTACACAAAAGGTTCCCTC+TGG - tig0024719:5229-5248 Msa1419460:intron 45.0%
!! TCCCTCTGGTCATTTTGCAT+CGG - tig0024719:5243-5262 Msa1419460:intron 45.0%
ACCGATGCAAAATGACCAGA+GGG + tig0024719:5247-5266 None:intergenic 45.0%
CATCGGTGACTGATATAGCA+TGG - tig0024719:5260-5279 Msa1419460:intron 45.0%
!! GATATAGCATGGGCTAGATC+TGG - tig0024719:5271-5290 Msa1419460:intron 45.0%
TATATCAGCTAGCCATGACC+AGG - tig0024719:5303-5322 Msa1419460:intron 45.0%
TTATGCTCCATGGAAAGTCG+AGG - tig0024719:6130-6149 Msa1419460:intron 45.0%
AGAGAAACCTCGACTTTCCA+TGG + tig0024719:6140-6159 None:intergenic 45.0%
GTCGAGGTTTCTCTTCAAGA+TGG - tig0024719:6146-6165 Msa1419460:intron 45.0%
CTCTTCAAGATGGAGAGTCT+TGG - tig0024719:6156-6175 Msa1419460:intron 45.0%
AGTCTTGGTATGAGATTGCG+CGG - tig0024719:6171-6190 Msa1419460:intron 45.0%
ATATCATGGCCATGAACCTG+AGG + tig0024719:6197-6216 None:intergenic 45.0%
! AAGGGGAATCACCGTTTTGT+TGG - tig0024719:6242-6261 Msa1419460:intron 45.0%
GGTGCAAATATGTCAGCTCT+TGG - tig0024719:6389-6408 Msa1419460:CDS 45.0%
GGATTTGGCTGTATACTCGT+AGG - tig0024719:6570-6589 Msa1419460:CDS 45.0%
CTCGTAGGTAGTTGACTGAT+AGG - tig0024719:6585-6604 Msa1419460:CDS 45.0%
!! GACCATTGGCTCTTTGTAGA+AGG - tig0024719:6818-6837 Msa1419460:intron 45.0%
TCCCTTCTACAAAGAGCCAA+TGG + tig0024719:6823-6842 None:intergenic 45.0%
GAGACGGAGTTGTCAATTAG+TGG - tig0024719:6850-6869 Msa1419460:intron 45.0%
CAGTTTCTGAGCTGATGTAG+CGG - tig0024719:6985-7004 Msa1419460:intron 45.0%
GCTAGAGTTGTGGGCAAATA+GGG + tig0024719:7211-7230 None:intergenic 45.0%
AGCTAGAGTTGTGGGCAAAT+AGG + tig0024719:7212-7231 None:intergenic 45.0%
CAATAGCAGATTGCGGAAAC+TGG + tig0024719:7267-7286 None:intergenic 45.0%
ACTACCAGCCATCATTTGGA+TGG + tig0024719:7455-7474 None:intergenic 45.0%
AACCATAGTCATAGAAGGGC+TGG - tig0024719:7490-7509 Msa1419460:intron 45.0%
TACCAGCCCTTCTATGACTA+TGG + tig0024719:7495-7514 None:intergenic 45.0%
!! TACAAATGGGGTTGATGGTC+TGG - tig0024719:7657-7676 Msa1419460:CDS 45.0%
AAACACAGTTGGAACTGCGT+CGG + tig0024719:7701-7720 None:intergenic 45.0%
GGAGGTTCAGTAAACACAGT+TGG + tig0024719:7712-7731 None:intergenic 45.0%
GCCAGTTGATCTTCAATTGG+AGG + tig0024719:7730-7749 None:intergenic 45.0%
AAAGTGTACAACGGTGAGAC+GGG + tig0024719:8067-8086 None:intergenic 45.0%
TTCTGCCACAGCAGTAGATT+GGG + tig0024719:8157-8176 None:intergenic 45.0%
! GTTGGTTCATGGAAAGCAGT+TGG - tig0024719:8192-8211 Msa1419460:intron 45.0%
! CATGTCCATAAGCGGTTTTC+AGG - tig0024719:8618-8637 Msa1419460:CDS 45.0%
TTATAGTCTTCTTGCGAGGC+AGG - tig0024719:8919-8938 Msa1419460:intron 45.0%
TCATGTTCTTGGAACCCACA+CGG - tig0024719:8965-8984 Msa1419460:intron 45.0%
TTGCAAATTCATGGCCGTGT+GGG + tig0024719:8982-9001 None:intergenic 45.0%
GCGACAAGACAGTGAAAATC+TGG - tig0024719:9011-9030 Msa1419460:intron 45.0%
GTCACACTACTCGTAAATGG+AGG + tig0024719:9082-9101 None:intergenic 45.0%
GCTGTCACACTACTCGTAAA+TGG + tig0024719:9085-9104 None:intergenic 45.0%
GTAGTGTGACAGCATTGTCT+TGG - tig0024719:9092-9111 Msa1419460:intron 45.0%
CTCCCCAATCGAAGAAATGA+TGG - tig0024719:9121-9140 Msa1419460:CDS 45.0%
!! GGATGGAAGCATTGTAGTAC+CGG - tig0024719:9210-9229 Msa1419460:intron 45.0%
!! GATGGAAGCATTGTAGTACC+GGG - tig0024719:9211-9230 Msa1419460:intron 45.0%
! CAATTTTCCTCCATGCCAGA+CGG + tig0024719:9297-9316 None:intergenic 45.0%
TCTGGCATGGAGGAAAATTG+AGG - tig0024719:9297-9316 Msa1419460:CDS 45.0%
!!! TTATTATCATTTTTTTTTTT+TGG - tig0024719:8395-8414 Msa1419460:CDS 5.0%
!! TTGGGTCAGTCAGTGTTGGT+GGG + tig0024719:3310-3329 None:intergenic 50.0%
! ATTGGGTCAGTCAGTGTTGG+TGG + tig0024719:3311-3330 None:intergenic 50.0%
ACAGAGGGCAGCGAGATTAT+CGG + tig0024719:3380-3399 None:intergenic 50.0%
ATAATCTCGCTGCCCTCTGT+CGG - tig0024719:3380-3399 Msa1419460:three_prime_UTR 50.0%
! AACGTTTCTTGGGGTGCTTC+TGG - tig0024719:3485-3504 Msa1419460:CDS 50.0%
CTTGGGGTTGAAAATGGCGA+CGG + tig0024719:3537-3556 None:intergenic 50.0%
! AGCTTTGTGACCAGGAAGAG+TGG + tig0024719:3649-3668 None:intergenic 50.0%
TGGGAACTGTCCCTTGTTGA+TGG - tig0024719:4004-4023 Msa1419460:intron 50.0%
GGGAACTGTCCCTTGTTGAT+GGG - tig0024719:4005-4024 Msa1419460:intron 50.0%
! ACTGTCCCTTGTTGATGGGA+AGG - tig0024719:4009-4028 Msa1419460:intron 50.0%
ACCCCTTTCTTGTGGGATTG+TGG + tig0024719:4152-4171 None:intergenic 50.0%
GTACTTCCACTGACGAGTAG+TGG - tig0024719:4260-4279 Msa1419460:intron 50.0%
! TGCCTGGACTCTTTTTCCGT+TGG - tig0024719:4394-4413 Msa1419460:intron 50.0%
AGGCAATTCCGCCATCGATA+AGG + tig0024719:4437-4456 None:intergenic 50.0%
!! TTATCGATGGCGGAATTGCC+TGG - tig0024719:4436-4455 Msa1419460:intron 50.0%
CAAATCGTCCTTGCAATGGG+AGG - tig0024719:4469-4488 Msa1419460:intron 50.0%
TTACGTAGCTCCGTGCCAAA+CGG - tig0024719:4800-4819 Msa1419460:intron 50.0%
TATGCCATTCCCGTTTGGCA+CGG + tig0024719:4813-4832 None:intergenic 50.0%
AAGAAGAAGAGCCAGCCACA+AGG + tig0024719:4883-4902 None:intergenic 50.0%
TTCCGTGGATGCAACCAAAG+GGG + tig0024719:4972-4991 None:intergenic 50.0%
CTTCCGTGGATGCAACCAAA+GGG + tig0024719:4973-4992 None:intergenic 50.0%
CTTTGGTTGCATCCACGGAA+GGG - tig0024719:4972-4991 Msa1419460:CDS 50.0%
TTTGGTTGCATCCACGGAAG+GGG - tig0024719:4973-4992 Msa1419460:CDS 50.0%
TGGCAGCCTGAAAAGACTTC+TGG - tig0024719:5055-5074 Msa1419460:CDS 50.0%
GAACTAAGCCACTGTGCTCT+GGG - tig0024719:5106-5125 Msa1419460:CDS 50.0%
CATAGAATCCCAGAGCACAG+TGG + tig0024719:5117-5136 None:intergenic 50.0%
!! CACTGTGCTCTGGGATTCTA+TGG - tig0024719:5115-5134 Msa1419460:CDS 50.0%
!! TGTGCTCTGGGATTCTATGG+TGG - tig0024719:5118-5137 Msa1419460:CDS 50.0%
CACCGATGCAAAATGACCAG+AGG + tig0024719:5248-5267 None:intergenic 50.0%
GAGTGAATCGGGGTTCATTG+CGG + tig0024719:5710-5729 None:intergenic 50.0%
!! GGGAATCACCGTTTTGTTGG+CGG - tig0024719:6245-6264 Msa1419460:intron 50.0%
CATCAGCTCCGCCAACAAAA+CGG + tig0024719:6256-6275 None:intergenic 50.0%
ATCGCCATAATGGCGAAGCT+AGG + tig0024719:6951-6970 None:intergenic 50.0%
TAGCTTCGCCATTATGGCGA+TGG - tig0024719:6950-6969 Msa1419460:intron 50.0%
CGCTACATCAGCTCAGAAAC+TGG + tig0024719:6987-7006 None:intergenic 50.0%
AGGGAATGGATGCAGAGCAT+CGG + tig0024719:7172-7191 None:intergenic 50.0%
TGCGTCGGGAACAGTTTCAA+AGG + tig0024719:7686-7705 None:intergenic 50.0%
AACACAGTTGGAACTGCGTC+GGG + tig0024719:7700-7719 None:intergenic 50.0%
AACTGGCATGGCACACACTT+TGG - tig0024719:7743-7762 Msa1419460:CDS 50.0%
CTTCTGCCACAGCAGTAGAT+TGG + tig0024719:8158-8177 None:intergenic 50.0%
CTACTGCTGTGGCAGAAGTA+TGG - tig0024719:8160-8179 Msa1419460:intron 50.0%
! CTGTGGCAGAAGTATGGCTT+TGG - tig0024719:8166-8185 Msa1419460:intron 50.0%
!! GAAGTATGGCTTTGGCAGGT+TGG - tig0024719:8174-8193 Msa1419460:intron 50.0%
!! AGGGACACAAGCGGATTATC+TGG - tig0024719:8942-8961 Msa1419460:intron 50.0%
GTTGCAAATTCATGGCCGTG+TGG + tig0024719:8983-9002 None:intergenic 50.0%
CACGGCCATGAATTTGCAAC+AGG - tig0024719:8983-9002 Msa1419460:intron 50.0%
GTGACAGCATTGTCTTGGGT+TGG - tig0024719:9097-9116 Msa1419460:intron 50.0%
TACGCGAACAAGAAGAGCAG+CGG + tig0024719:9242-9261 None:intergenic 50.0%
TGCCTCTACAGTAAACCGTC+TGG - tig0024719:9279-9298 Msa1419460:CDS 50.0%
TGCCAGACGGTTTACTGTAG+AGG + tig0024719:9284-9303 None:intergenic 50.0%
CTACAGTAAACCGTCTGGCA+TGG - tig0024719:9284-9303 Msa1419460:CDS 50.0%
CAGAGGGCAGCGAGATTATC+GGG + tig0024719:3379-3398 None:intergenic 55.0%
!! CGTCGCCATTTTCAACCCCA+AGG - tig0024719:3535-3554 Msa1419460:CDS 55.0%
GGCTTACCACTACTCGTCAG+TGG + tig0024719:4269-4288 None:intergenic 55.0%
GCGGAATTGCCTGGATGTAG+TGG - tig0024719:4445-4464 Msa1419460:intron 55.0%
CGTCCTTGCAATGGGAGGAT+TGG - tig0024719:4474-4493 Msa1419460:intron 55.0%
TTCACCTTTACTGCGGGGGA+AGG - tig0024719:4506-4525 Msa1419460:CDS 55.0%
TACGTAGCTCCGTGCCAAAC+GGG - tig0024719:4801-4820 Msa1419460:intron 55.0%
CGGGAATGGCATATACAGGG+AGG - tig0024719:4820-4839 Msa1419460:intron 55.0%
GGTTGAATGGCAACCCCCTT+TGG - tig0024719:4955-4974 Msa1419460:intron 55.0%
ACCCCCTTTGGTTGCATCCA+CGG - tig0024719:4967-4986 Msa1419460:intron 55.0%
TCCGTGGATGCAACCAAAGG+GGG + tig0024719:4971-4990 None:intergenic 55.0%
CCTTCCGTGGATGCAACCAA+AGG + tig0024719:4974-4993 None:intergenic 55.0%
CCTTTGGTTGCATCCACGGA+AGG - tig0024719:4971-4990 Msa1419460:CDS 55.0%
ATAACAGGCTTCCCCTTCCG+TGG + tig0024719:4987-5006 None:intergenic 55.0%
CGAACTAAGCCACTGTGCTC+TGG - tig0024719:5105-5124 Msa1419460:CDS 55.0%
GGTGGTCATTGGAGCCCAAA+TGG - tig0024719:5136-5155 Msa1419460:CDS 55.0%
CTTCGCCATTATGGCGATGG+CGG - tig0024719:6953-6972 Msa1419460:intron 55.0%
AACAGCCGCCATCGCCATAA+TGG + tig0024719:6961-6980 None:intergenic 55.0%
GGGTCCATCCAAATGATGGC+TGG - tig0024719:7448-7467 Msa1419460:intron 55.0%
!! GGCAGAAGTATGGCTTTGGC+AGG - tig0024719:8170-8189 Msa1419460:intron 55.0%
!! GGCTTTGGCAGGTTGGTTCA+TGG - tig0024719:8181-8200 Msa1419460:intron 55.0%
GTTCATTCAAACAGGGCCCC+AGG - tig0024719:8783-8802 Msa1419460:intron 55.0%
TAGTCTTCTTGCGAGGCAGG+AGG - tig0024719:8922-8941 Msa1419460:intron 55.0%
AGTCTTCTTGCGAGGCAGGA+GGG - tig0024719:8923-8942 Msa1419460:intron 55.0%
CAGTAAACCGTCTGGCATGG+AGG - tig0024719:9287-9306 Msa1419460:CDS 55.0%
TTATCGGGCGACGGCGATGA+TGG + tig0024719:3364-3383 None:intergenic 60.0%
GCAGCGAGATTATCGGGCGA+CGG + tig0024719:3373-3392 None:intergenic 60.0%
CTTTACTGCGGGGGAAGGAC+CGG - tig0024719:4511-4530 Msa1419460:CDS 60.0%
AGCTCCGTGCCAAACGGGAA+TGG - tig0024719:4806-4825 Msa1419460:intron 60.0%
GAAGGTCCTGTCCTTGTGGC+TGG - tig0024719:4869-4888 Msa1419460:intron 60.0%
GAAGAGCCAGCCACAAGGAC+AGG + tig0024719:4878-4897 None:intergenic 60.0%
GTATGAGATTGCGCGGCCTC+AGG - tig0024719:6178-6197 Msa1419460:intron 60.0%
ATTGCGCGGCCTCAGGTTCA+TGG - tig0024719:6185-6204 Msa1419460:intron 60.0%
GCAGGCCCAATCTACTGCTG+TGG - tig0024719:8149-8168 Msa1419460:CDS 60.0%
AGAAGAGCAGCGGCGAAACC+CGG + tig0024719:9232-9251 None:intergenic 60.0%
! GGGCGACGGCGATGATGGTT+GGG + tig0024719:3359-3378 None:intergenic 65.0%
CGGTCCTTCCCCCGCAGTAA+AGG + tig0024719:4513-4532 None:intergenic 65.0%
CGAGGCAGGAGGGACACAAG+CGG - tig0024719:8933-8952 Msa1419460:intron 65.0%
! CGGGCGACGGCGATGATGGT+TGG + tig0024719:3360-3379 None:intergenic 70.0%
CTGCGGGGGAAGGACCGGAA+AGG - tig0024719:4516-4535 Msa1419460:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024719 gene 3258 9566 3258 ID=Msa1419460;Name=Msa1419460
tig0024719 mRNA 3258 9566 3258 ID=Msa1419460-mRNA-1;Parent=Msa1419460;Name=Msa1419460-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|1|1|1|1|10|173|836
tig0024719 exon 3258 3921 3258 ID=Msa1419460-mRNA-1:exon:947;Parent=Msa1419460-mRNA-1
tig0024719 exon 4494 4671 4494 ID=Msa1419460-mRNA-1:exon:946;Parent=Msa1419460-mRNA-1
tig0024719 exon 4969 5186 4969 ID=Msa1419460-mRNA-1:exon:945;Parent=Msa1419460-mRNA-1
tig0024719 exon 6384 6705 6384 ID=Msa1419460-mRNA-1:exon:944;Parent=Msa1419460-mRNA-1
tig0024719 exon 7500 8171 7500 ID=Msa1419460-mRNA-1:exon:943;Parent=Msa1419460-mRNA-1
tig0024719 exon 8287 8447 8287 ID=Msa1419460-mRNA-1:exon:942;Parent=Msa1419460-mRNA-1
tig0024719 exon 8543 8696 8543 ID=Msa1419460-mRNA-1:exon:941;Parent=Msa1419460-mRNA-1
tig0024719 exon 8794 8879 8794 ID=Msa1419460-mRNA-1:exon:940;Parent=Msa1419460-mRNA-1
tig0024719 exon 9107 9194 9107 ID=Msa1419460-mRNA-1:exon:939;Parent=Msa1419460-mRNA-1
tig0024719 exon 9268 9566 9268 ID=Msa1419460-mRNA-1:exon:938;Parent=Msa1419460-mRNA-1
tig0024719 five_prime_UTR 9409 9566 9409 ID=Msa1419460-mRNA-1:five_prime_utr;Parent=Msa1419460-mRNA-1
tig0024719 CDS 9268 9408 9268 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 9107 9194 9107 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 8794 8879 8794 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 8543 8696 8543 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 8287 8447 8287 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 7500 8171 7500 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 6384 6705 6384 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 4969 5186 4969 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 4494 4671 4494 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 CDS 3431 3921 3431 ID=Msa1419460-mRNA-1:cds;Parent=Msa1419460-mRNA-1
tig0024719 three_prime_UTR 3258 3430 3258 ID=Msa1419460-mRNA-1:three_prime_utr;Parent=Msa1419460-mRNA-1
Gene Sequence

>Msa1419460

ATGCATATCGAAGAAGGAGTTGAAGTGAAAAGGGTATTCATTGGAGCAGGATGTAACAGAATAGTGAACAACGTTTCTTGGGGTGCTTCTGGTTTTGTTTCTTTTGGAGCTTCAAACGCCGTCGCCATTTTCAACCCCAAGAGTGCTCAAATTTTGACCACTCTTCCTGGTCACAAAGCTGTTGTCAATTGCACTCACTGGCTCCCAAGTAGCAAATTTCTATTCAAAGCAAAAGAATTGGAACTGCATTATTTGCTATCTGGAGATGCTGATGGTGCTATTATTCTATGGGAACTGTCCCTTGTTGATGGGAAGTGGAGGCAAGTGTCACAAGTACCACAATCCCACAAGAAAGGGGTTACATGTATTGATGGAATTATGGTTTCTCAAACTGAGGCAATGTTTGCATCTACTTCTTCAGATGGTACTGTTTGTATATGGGAACTTGTACTTCCACTGACGAGTAGTGGTGACTGTAAATTATCATGCCTGGACTCTTTTTCCGTTGGTTCTAAATCTATGGTAGCCTTATCGATGGCGGAATTGCCTGGATGTAGTGGTCAAATCGTCCTTGCAATGGGAGGATTGGATAACAAGATTCACCTTTACTGCGGGGGAAGGACCGGAAAGTTTGTACATTCATGTGAGCTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCATTACCTGTAAGCATCAATGGAGAGGTAAACAATATTTTTCTGGTGAGTTCATCTCAAGACAAATGCATACGAATTTGGAAGATGGCATTACGTAGCTCCGTGCCAAACGGGAATGGCATATACAGGGAGGAAGAGTCAAGCTTATCATCCTATATAGAAGGTCCTGTCCTTGTGGCTGGCTCTTCTTCTTTTCAGATATCCTTAGAATCTCTTTTGATTGGACATGAGGATTGGGTATATTCGGTTGAATGGCAACCCCCTTTGGTTGCATCCACGGAAGGGGAAGCCTGTTATCAACCACAAAGCATTTTATCTGCATCCATGGACAAGACTATGATGATCTGGCAGCCTGAAAAGACTTCTGGTGTGTGGATGAATGTGGTTACTGTTGGCGAACTAAGCCACTGTGCTCTGGGATTCTATGGTGGTCATTGGAGCCCAAATGGAGATTCAATTTTAGCACATGGATATGGTGGATCGTTCCATCTTTGGAAAAATGTTGGTGATGACAACTGGCTTACACAAAAGGTTCCCTCTGGTCATTTTGCATCGGTGACTGATATAGCATGGGCTAGATCTGGTGATTACATTATATCAGCTAGCCATGACCAGACAACTAGAATTTATGCTCCATGGAAAGTCGAGGTTTCTCTTCAAGATGGAGAGTCTTGGTATGAGATTGCGCGGCCTCAGGTTCATGGCCATGATATAAATTGTATGACAGTTGTTCATAGTAAGGGGAATCACCGTTTTGTTGGCGGAGCTGATGAGAAAGTTGCTAGAGTGTTTGAAGCTCCATTATCATTTTTGAAAACGTTGAGTAACGCCACTTTGCAGAAGTCTTGTTATTCTGATGACGACTTGACAAACATCCAGATTTTGGGTGCAAATATGTCAGCTCTTGGACTATCACAAAAACCTATTTATGCCCAAGCTGTACATGAGACCTCTGATACAAATGGGGTTGATGGTCTGGACACCTTTGAAACTGTTCCCGACGCAGTTCCAACTGTGTTTACTGAACCTCCAATTGAAGATCAACTGGCATGGCACACACTTTGGCCTGAATCACATAAACTCTATGGCCATGGAAATGAGCTATTTTCTTTATGCTGTGATCATAAGGGTGAGCTTGTTGCTTCTTCATGTAAGGCCCAATCTACTGCTGTGGCAGAAGTATGGCTTTGGCAGGTTGGTTCATGGAAAGCAGTTGGCCGCTTGCAATCCCATAGCTTAACAGTGACACAGATGGAATTCTCACACGATGACAACTTTCTTTTGACTGTCTCAAGAGATCGCCAGTTCTCTGTGTTTACAATCACAACAACAGGAACCAGTGAAATTAGTTATAGTCTTCTTGCGAGGCAGGAGGGACACAAGCGGATTATCTGGTCATGTTCTTGGAACCCACACGGCCATGAATTTGCAACAGGTTCACGCGACAAGACAGTGAAAATCTGGGCCGTAGAGAAGAAATCTTCATCAGTAAGACAACTTATGACTTTACCTCCATTTACGAGTAGTGTGACAGCATTGTCTTGGGTTGGTCTCCCCAATCGAAGAAATGATGGAATTCTAGCTGTTGGAATGGAAAACGGCCAAATAGAGTTGTGGAGTCTGTCCTATAACAGACAAGAGGATGGAAGCATTGTAGTACCGGGTTTCGCCGCTGCTCTTCTTGTTCGCGTAGATCCTTTTATATGTCATGCCTCTACAGTAAACCGTCTGGCATGGAGGAAAATTGAGGAAGATCACAAGAGTCTACAACTTGCTTCTTGTGGAGCTGATAATTGTGTGAGAGTGTTTGATGTAACTGTTTGA
Protein sequence

>Msa1419460

MHIEEGVEVKRVFIGAGCNRIVNNVSWGASGFVSFGASNAVAIFNPKSAQILTTLPGHKAVVNCTHWLPSSKFLFKAKELELHYLLSGDADGAIILWELSLVDGKWRQVSQVPQSHKKGVTCIDGIMVSQTEAMFASTSSDGTVCIWELVLPLTSSGDCKLSCLDSFSVGSKSMVALSMAELPGCSGQIVLAMGGLDNKIHLYCGGRTGKFVHSCELKGHTDWIRSLDFSLPVSINGEVNNIFLVSSSQDKCIRIWKMALRSSVPNGNGIYREEESSLSSYIEGPVLVAGSSSFQISLESLLIGHEDWVYSVEWQPPLVASTEGEACYQPQSILSASMDKTMMIWQPEKTSGVWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGDDNWLTQKVPSGHFASVTDIAWARSGDYIISASHDQTTRIYAPWKVEVSLQDGESWYEIARPQVHGHDINCMTVVHSKGNHRFVGGADEKVARVFEAPLSFLKTLSNATLQKSCYSDDDLTNIQILGANMSALGLSQKPIYAQAVHETSDTNGVDGLDTFETVPDAVPTVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHKGELVASSCKAQSTAVAEVWLWQVGSWKAVGRLQSHSLTVTQMEFSHDDNFLLTVSRDRQFSVFTITTTGTSEISYSLLARQEGHKRIIWSCSWNPHGHEFATGSRDKTVKIWAVEKKSSSVRQLMTLPPFTSSVTALSWVGLPNRRNDGILAVGMENGQIELWSLSYNRQEDGSIVVPGFAAALLVRVDPFICHASTVNRLAWRKIEEDHKSLQLASCGADNCVRVFDVTV*