AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429870 MtrunA17_Chr3g0137781 96.178 157 6 0 12 168 21 177 2.15e-112 317
Msa1429870 MtrunA17_Chr4g0003351 50.943 159 72 4 11 168 6 159 7.67e-52 162
Msa1429870 MtrunA17_Chr4g0063831 50.943 159 69 5 13 167 18 171 5.74e-45 145
Msa1429870 MtrunA17_Chr1g0149341 55.714 140 60 2 30 168 3 141 1.55e-34 118
Msa1429870 MtrunA17_Chr1g0199151 51.515 66 31 1 104 168 21 86 1.19e-19 78.6
Msa1429870 MtrunA17_Chr7g0264721 37.500 80 46 2 91 168 28 105 1.73e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429870 AT5G25360.3 55.128 156 64 3 13 168 67 216 8.24e-53 167
Msa1429870 AT5G25360.2 55.405 148 59 3 21 168 29 169 1.33e-48 155
Msa1429870 AT5G25360.1 55.405 148 59 3 21 168 29 169 1.33e-48 155
Msa1429870 AT4G32342.1 49.091 165 66 5 7 167 10 160 5.10e-45 145
Msa1429870 AT4G32342.2 49.091 165 66 5 7 167 48 198 1.59e-44 145
Msa1429870 AT1G15350.1 45.570 158 78 5 13 168 3 154 5.59e-37 125
Msa1429870 AT1G15350.2 45.570 158 78 5 13 168 3 154 5.59e-37 125
Msa1429870 AT3G15770.2 53.719 121 51 3 48 167 44 160 2.52e-36 124
Msa1429870 AT3G15770.1 53.719 121 51 3 48 167 45 161 2.77e-36 124
Msa1429870 AT1G15350.6 55.446 101 43 2 70 168 8 108 3.78e-31 108
Msa1429870 AT1G15350.3 55.446 101 43 2 70 168 8 108 3.78e-31 108
Msa1429870 AT1G15350.5 55.446 101 43 2 70 168 8 108 3.78e-31 108
Msa1429870 AT1G15350.4 55.446 101 43 2 70 168 8 108 3.78e-31 108
Msa1429870 AT3G54880.1 41.228 114 62 2 58 168 1 112 9.60e-24 90.1
Msa1429870 AT5G03440.2 42.857 84 48 0 85 168 15 98 7.61e-20 79.7
Msa1429870 AT5G03440.3 42.857 84 48 0 85 168 15 98 7.61e-20 79.7
Msa1429870 AT5G03440.1 42.857 84 48 0 85 168 15 98 7.61e-20 79.7

Find 89 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTATTTACCTTATTT+TGG 0.062991 tig0026572:-53344 None:intergenic
TTCATCCTCTTAATGTTTAT+TGG 0.159120 tig0026572:+54612 Msa1429870:three_prime_UTR
TTGCCATGATTGACAAATTC+TGG 0.203050 tig0026572:-52969 None:intergenic
TTGACTTTCTTGTTGATATA+TGG 0.216717 tig0026572:+54507 Msa1429870:CDS
CAACCCATTGTTGCCTTGTT+TGG 0.223693 tig0026572:-53282 None:intergenic
GACACTTGTATTTATGATCT+TGG 0.275845 tig0026572:+54929 Msa1429870:three_prime_UTR
GGGCGAGGCCGATGCATCTA+AGG 0.287521 tig0026572:+52767 Msa1429870:CDS
AAATGGATGACATGCTTCTC+TGG 0.301324 tig0026572:-52890 None:intergenic
TGTTGTCGTTGTTCATTGTT+TGG 0.311681 tig0026572:-52806 None:intergenic
AACAATGGGTTGGAAATAAA+AGG 0.312465 tig0026572:+53293 Msa1429870:CDS
AGTGAAAACATAACACCTAT+TGG 0.318943 tig0026572:-54901 None:intergenic
GGTTGTGTTAATCATGCTTC+TGG 0.347483 tig0026572:+52677 None:intergenic
GAGCAGCAGTGCTATTGAAT+TGG 0.355690 tig0026572:+52848 Msa1429870:CDS
TTGGGTTCCCCAACTTGTTT+CGG 0.356307 tig0026572:-53325 None:intergenic
TATGATTGAACTGGCAAAAC+AGG 0.376802 tig0026572:+54545 Msa1429870:exon
AACCAACTTAATAGAAAATC+AGG 0.378292 tig0026572:-54734 None:intergenic
TGACTTTCTTGTTGATATAT+GGG 0.383956 tig0026572:+54508 Msa1429870:CDS
AAGTTGGGGAACCCAAAATA+AGG 0.384880 tig0026572:+53332 Msa1429870:CDS
TGTTGATATATGGGAATTAG+AGG 0.391346 tig0026572:+54517 Msa1429870:CDS
ACTATCCAATAAACATTAAG+AGG 0.394734 tig0026572:-54617 None:intergenic
CCCAACTTGTTTCGGACGCC+CGG 0.401219 tig0026572:-53317 None:intergenic
CCTCTGCTCTGTTGCAAAGC+AGG 0.407496 tig0026572:-52705 None:intergenic
TCTCCAGAATTTGTCAATCA+TGG 0.416899 tig0026572:+52966 Msa1429870:CDS
CCGGGCGTCCGAAACAAGTT+GGG 0.420971 tig0026572:+53317 Msa1429870:CDS
CAACAGAGCAGAGGTTGTCT+TGG 0.421310 tig0026572:+52714 Msa1429870:CDS
CTGGAAGGAAATGTTAATCT+TGG 0.422072 tig0026572:-54962 None:intergenic
GCCACCTACGAGAGTCTACT+TGG 0.426114 tig0026572:+54346 Msa1429870:CDS
AAAAGACTTAGTACTTACTT+TGG 0.426312 tig0026572:-54776 None:intergenic
GTGAAAACATAACACCTATT+GGG 0.432741 tig0026572:-54900 None:intergenic
GTTGTCGTTGTTCATTGTTT+GGG 0.444475 tig0026572:-52805 None:intergenic
TGGGTTGGAAATAAAAGGTC+CGG 0.452762 tig0026572:+53298 Msa1429870:CDS
GGTGATCTCCAAGTTGGAAT+GGG 0.452928 tig0026572:+55275 Msa1429870:three_prime_UTR
ATGAAAGAACTTACTCTAAG+AGG 0.460791 tig0026572:-54397 None:intergenic
AGGATGGTTTGACACGGAAA+TGG 0.461819 tig0026572:-52907 None:intergenic
AGAGGAATGCGCTCAGGAAA+AGG 0.472233 tig0026572:-54379 None:intergenic
GATCAAATAGTCTGCAATCC+AGG 0.473644 tig0026572:+55216 Msa1429870:three_prime_UTR
TGAATGCCATCACTACTTTG+AGG 0.479975 tig0026572:-52936 None:intergenic
GAGGGCATGTATGATTGAAC+TGG 0.485460 tig0026572:+54536 Msa1429870:exon
GATGATTCCTACGGCAGCAC+TGG 0.489025 tig0026572:-54981 None:intergenic
TCCGGGCGTCCGAAACAAGT+TGG 0.490712 tig0026572:+53316 Msa1429870:CDS
TTATTAATAACTGACCCAAT+AGG 0.491022 tig0026572:+54886 Msa1429870:three_prime_UTR
ATCATCTCATACTGTGACAT+TGG 0.493232 tig0026572:+54998 Msa1429870:three_prime_UTR
TGGTGATCTCCAAGTTGGAA+TGG 0.502647 tig0026572:+55274 Msa1429870:three_prime_UTR
GAACCAAACAAGGCAACAAT+GGG 0.503294 tig0026572:+53279 Msa1429870:CDS
CTTAGTGGTGATCTCCAAGT+TGG 0.503397 tig0026572:+55269 Msa1429870:three_prime_UTR
TTCTTCTGTGGAACCAAACA+AGG 0.508337 tig0026572:+53269 Msa1429870:CDS
AGTACTTACTTTGGTGCAGA+TGG 0.516361 tig0026572:-54767 None:intergenic
TCTGCAATCCAGGACTATAG+AGG 0.524169 tig0026572:+55226 Msa1429870:three_prime_UTR
CATTGGTGAGGCTTTGATGA+AGG 0.524390 tig0026572:+55015 Msa1429870:three_prime_UTR
ACTCTAAGAGGAATGCGCTC+AGG 0.532544 tig0026572:-54385 None:intergenic
TTCCACAACTAAGGCAGTTG+CGG 0.533016 tig0026572:+55099 Msa1429870:three_prime_UTR
GAATTGATCCTCTATAGTCC+TGG 0.533065 tig0026572:-55234 None:intergenic
TACTTTGAGGATCAGAAGGA+TGG 0.543246 tig0026572:-52923 None:intergenic
GCTCCCGCCCCATTCCAACT+TGG 0.549677 tig0026572:-55283 None:intergenic
GGAACCAAACAAGGCAACAA+TGG 0.556597 tig0026572:+53278 Msa1429870:CDS
AATGGATGACATGCTTCTCT+GGG 0.557186 tig0026572:-52889 None:intergenic
ATCCGCAACTGCCTTAGTTG+TGG 0.558439 tig0026572:-55101 None:intergenic
GGCGAGGCCGATGCATCTAA+GGG 0.563203 tig0026572:+52768 Msa1429870:CDS
TCTCCAAGTTGGAATGGGGC+GGG 0.563451 tig0026572:+55280 Msa1429870:three_prime_UTR
TGTATGCAGGTCTTCTTCTG+TGG 0.571627 tig0026572:+53257 Msa1429870:intron
TCCTCTCCTGCAAAATCTAG+AGG 0.574443 tig0026572:-54578 None:intergenic
CCTCTCCTGCAAAATCTAGA+GGG 0.578403 tig0026572:-54577 None:intergenic
TCTGATCCTCAAAGTAGTGA+TGG 0.580218 tig0026572:+52930 Msa1429870:CDS
ATTCCTACGGCAGCACTGGA+AGG 0.586917 tig0026572:-54977 None:intergenic
CAAACAAGGCAACAATGGGT+TGG 0.588867 tig0026572:+53283 Msa1429870:CDS
GGGTTGGAAATAAAAGGTCC+GGG 0.591087 tig0026572:+53299 Msa1429870:CDS
ATCTCCAAGTTGGAATGGGG+CGG 0.592965 tig0026572:+55279 Msa1429870:three_prime_UTR
GTTGATATATGGGAATTAGA+GGG 0.593196 tig0026572:+54518 Msa1429870:CDS
TCGCCCATTAATAAAACAAG+AGG 0.595108 tig0026572:-52750 None:intergenic
TCACTACTTTGAGGATCAGA+AGG 0.595919 tig0026572:-52927 None:intergenic
CAACTTGGAGATCACCACTA+AGG 0.598538 tig0026572:-55268 None:intergenic
TTTGCAGGAGAGGAAAGGTG+TGG 0.612135 tig0026572:+54587 Msa1429870:three_prime_UTR
ACTATTTGATCAAAATAAGA+CGG 0.613083 tig0026572:-55204 None:intergenic
TTTCCTTCCAGTGCTGCCGT+AGG 0.617308 tig0026572:+54974 Msa1429870:three_prime_UTR
AGTGCTATTGAATTGGATCA+TGG 0.626780 tig0026572:+52855 Msa1429870:CDS
ACAGTATGAGATGATTCCTA+CGG 0.628284 tig0026572:-54990 None:intergenic
CTCATACTGTGACATTGGTG+AGG 0.628731 tig0026572:+55003 Msa1429870:three_prime_UTR
CCTGCTTTGCAACAGAGCAG+AGG 0.631103 tig0026572:+52705 Msa1429870:CDS
AGTGAAGCTTGACTAAGCTG+AGG 0.634103 tig0026572:-54835 None:intergenic
GTGATCTCCAAGTTGGAATG+GGG 0.637300 tig0026572:+55276 Msa1429870:three_prime_UTR
GTGAAGCTTGACTAAGCTGA+GGG 0.640473 tig0026572:-54834 None:intergenic
CTCTCCTGCAAAATCTAGAG+GGG 0.644947 tig0026572:-54576 None:intergenic
CCCAAGTAGACTCTCGTAGG+TGG 0.647046 tig0026572:-54347 None:intergenic
ATCAGAAGGATGGTTTGACA+CGG 0.658576 tig0026572:-52913 None:intergenic
CGGGCGTCCGAAACAAGTTG+GGG 0.664193 tig0026572:+53318 Msa1429870:CDS
AGTCCCAAGTAGACTCTCGT+AGG 0.676556 tig0026572:-54350 None:intergenic
CCACCTACGAGAGTCTACTT+GGG 0.677939 tig0026572:+54347 Msa1429870:CDS
TGAGGGATTAGTCTCCGCAG+AGG 0.727780 tig0026572:-54817 None:intergenic
TGTAAATCGGATATCCTCTG+CGG 0.750038 tig0026572:+54803 Msa1429870:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTACCTTATTTT+GGG - tig0026572:53346-53365 None:intergenic 10.0%
!!! TATATTTATTTACCTTATTT+TGG - tig0026572:53347-53366 None:intergenic 10.0%
!! AAATAAGGTAAATAAATATA+AGG + tig0026572:53347-53366 Msa1429870:intron 10.0%
!!! TTTTTTTTTCTGATTATAAT+TGG + tig0026572:54253-54272 Msa1429870:intron 10.0%
!!! TTTTTTTTCTGATTATAATT+GGG + tig0026572:54254-54273 Msa1429870:intron 10.0%
!! AAAGAAAATATACAAATAGA+GGG - tig0026572:53029-53048 None:intergenic 15.0%
!! AAAAGAAAATATACAAATAG+AGG - tig0026572:53030-53049 None:intergenic 15.0%
!! CAAAATATAATAAAAAGACA+AGG - tig0026572:53196-53215 None:intergenic 15.0%
!!! AAAACCTCTTGTTTTATTAA+TGG + tig0026572:52746-52765 Msa1429870:CDS 20.0%
!!! AAACCTCTTGTTTTATTAAT+GGG + tig0026572:52747-52766 Msa1429870:CDS 20.0%
!! AAGAAAATATACAAATAGAG+GGG - tig0026572:53028-53047 None:intergenic 20.0%
!!! TTTTGTTTCTTTTATCTTGA+TGG + tig0026572:53053-53072 Msa1429870:intron 20.0%
!! ATTATTACAAGCAATTGATA+AGG - tig0026572:53225-53244 None:intergenic 20.0%
!! TTATCAATTGCTTGTAATAA+TGG + tig0026572:53224-53243 Msa1429870:intron 20.0%
!! TAAAAAATGTATGAGTGATA+AGG + tig0026572:54021-54040 Msa1429870:intron 20.0%
!!! TTTTGTCAAGTTCTAATTTT+CGG + tig0026572:54302-54321 Msa1429870:intron 20.0%
!!! TTGTTTTTATTTTTTCTGTG+TGG + tig0026572:54664-54683 Msa1429870:three_prime_UTR 20.0%
!! ACTATTTGATCAAAATAAGA+CGG - tig0026572:55207-55226 None:intergenic 20.0%
!!! ACAGATCTGAAGATTTTTTT+TGG + tig0026572:52826-52845 Msa1429870:CDS 25.0%
!! TTAACTTTAAGAACCATGAA+CGG - tig0026572:53107-53126 None:intergenic 25.0%
!!! CTTTCTTCTATCGATTTTAT+AGG + tig0026572:53166-53185 Msa1429870:intron 25.0%
! CTTTGTATTACAACATCTAT+CGG - tig0026572:53673-53692 None:intergenic 25.0%
! AATACAAAGAGTAGATAAGA+TGG + tig0026572:53684-53703 Msa1429870:intron 25.0%
! AATCTTTCCTAATAGTTTCT+AGG - tig0026572:53742-53761 None:intergenic 25.0%
! AACTATTAGGAAAGATTTAG+AGG + tig0026572:53745-53764 Msa1429870:intron 25.0%
! GGAAAAAAATGTACAAACAA+GGG - tig0026572:53883-53902 None:intergenic 25.0%
! AGGAAAAAAATGTACAAACA+AGG - tig0026572:53884-53903 None:intergenic 25.0%
! TGGTCTAAACAATGAATAAA+AGG - tig0026572:53980-53999 None:intergenic 25.0%
!! CTTGAAGCAAAAGATTTTTA+TGG - tig0026572:54000-54019 None:intergenic 25.0%
! AAGTAGAGAAATTAATTGAG+AGG + tig0026572:54064-54083 Msa1429870:intron 25.0%
!! TTTTCCAAAGATAGAATCAT+GGG - tig0026572:54188-54207 None:intergenic 25.0%
!! ATTTTCCAAAGATAGAATCA+TGG - tig0026572:54189-54208 None:intergenic 25.0%
!! TTCTTTATCTACTCATTTTC+TGG + tig0026572:54430-54449 Msa1429870:intron 25.0%
! AATGATATTACCATCAGTTA+CGG - tig0026572:54472-54491 None:intergenic 25.0%
! TTGACTTTCTTGTTGATATA+TGG + tig0026572:54507-54526 Msa1429870:CDS 25.0%
! TGACTTTCTTGTTGATATAT+GGG + tig0026572:54508-54527 Msa1429870:CDS 25.0%
! TTCATCCTCTTAATGTTTAT+TGG + tig0026572:54612-54631 Msa1429870:three_prime_UTR 25.0%
! ACTATCCAATAAACATTAAG+AGG - tig0026572:54620-54639 None:intergenic 25.0%
!!! TTTTTATTTTTTCTGTGTGG+AGG + tig0026572:54667-54686 Msa1429870:three_prime_UTR 25.0%
!! TTCCTGATTTTCTATTAAGT+TGG + tig0026572:54732-54751 Msa1429870:three_prime_UTR 25.0%
! AACCAACTTAATAGAAAATC+AGG - tig0026572:54737-54756 None:intergenic 25.0%
! AAAAGACTTAGTACTTACTT+TGG - tig0026572:54779-54798 None:intergenic 25.0%
!! AAGTCTTTTTGTGTGTAAAT+CGG + tig0026572:54790-54809 Msa1429870:three_prime_UTR 25.0%
! TTATTAATAACTGACCCAAT+AGG + tig0026572:54886-54905 Msa1429870:three_prime_UTR 25.0%
! GGAATCGCTTTAAATATATG+TGG + tig0026572:53074-53093 Msa1429870:intron 30.0%
TTACAAGCAATTGATAAGGA+TGG - tig0026572:53221-53240 None:intergenic 30.0%
!! AACAATGGGTTGGAAATAAA+AGG + tig0026572:53293-53312 Msa1429870:CDS 30.0%
TAGAAAGGATGGTAGAAAAT+AGG + tig0026572:53617-53636 Msa1429870:intron 30.0%
AGTAAGACCTAGAAACTATT+AGG + tig0026572:53732-53751 Msa1429870:intron 30.0%
AGATTTAGAGGTTAATGAGT+TGG + tig0026572:53757-53776 Msa1429870:intron 30.0%
GATTTAGAGGTTAATGAGTT+GGG + tig0026572:53758-53777 Msa1429870:intron 30.0%
GTTATATCCGAAACCATATT+TGG - tig0026572:53785-53804 None:intergenic 30.0%
TGGTTTCGGATATAACATTA+TGG + tig0026572:53789-53808 Msa1429870:intron 30.0%
TAGAGAAATTAATTGAGAGG+TGG + tig0026572:54067-54086 Msa1429870:intron 30.0%
GAAATTAGGAGACGTTAATT+AGG - tig0026572:54166-54185 None:intergenic 30.0%
AGATAGAATCATGGGAAATT+AGG - tig0026572:54180-54199 None:intergenic 30.0%
ATTTCCCATGATTCTATCTT+TGG + tig0026572:54181-54200 Msa1429870:intron 30.0%
ATGAAAGAACTTACTCTAAG+AGG - tig0026572:54400-54419 None:intergenic 30.0%
TGTTGATATATGGGAATTAG+AGG + tig0026572:54517-54536 Msa1429870:CDS 30.0%
GTTGATATATGGGAATTAGA+GGG + tig0026572:54518-54537 Msa1429870:CDS 30.0%
!!! TTTTTTAAATAGCAGCGCTT+AGG - tig0026572:54861-54880 None:intergenic 30.0%
GTGAAAACATAACACCTATT+GGG - tig0026572:54903-54922 None:intergenic 30.0%
AGTGAAAACATAACACCTAT+TGG - tig0026572:54904-54923 None:intergenic 30.0%
!! AATAGGTGTTATGTTTTCAC+TGG + tig0026572:54903-54922 Msa1429870:three_prime_UTR 30.0%
GACACTTGTATTTATGATCT+TGG + tig0026572:54929-54948 Msa1429870:three_prime_UTR 30.0%
!!! GTGTTTTTTTTCCACAACTA+AGG + tig0026572:55090-55109 Msa1429870:three_prime_UTR 30.0%
!!! TTCTTTGTTTTCTACCTTAG+TGG + tig0026572:55254-55273 Msa1429870:three_prime_UTR 30.0%
TCGCCCATTAATAAAACAAG+AGG - tig0026572:52753-52772 None:intergenic 35.0%
!!! TCTTGTTTTATTAATGGGCG+AGG + tig0026572:52752-52771 Msa1429870:CDS 35.0%
! TTTTAGTCCCTTAGATGCAT+CGG - tig0026572:52778-52797 None:intergenic 35.0%
GTTGTCGTTGTTCATTGTTT+GGG - tig0026572:52808-52827 None:intergenic 35.0%
TGTTGTCGTTGTTCATTGTT+TGG - tig0026572:52809-52828 None:intergenic 35.0%
! AGTGCTATTGAATTGGATCA+TGG + tig0026572:52855-52874 Msa1429870:CDS 35.0%
TCTCCAGAATTTGTCAATCA+TGG + tig0026572:52966-52985 Msa1429870:CDS 35.0%
TTGCCATGATTGACAAATTC+TGG - tig0026572:52972-52991 None:intergenic 35.0%
AGGGGTGATAATAGATAAAC+TGG - tig0026572:53010-53029 None:intergenic 35.0%
!! TGGTAAGTTTTGATGTATGC+AGG + tig0026572:53244-53263 Msa1429870:intron 35.0%
TATAAGGTTTCTGCATGAAG+AGG + tig0026572:53363-53382 Msa1429870:intron 35.0%
CAAGGGCAAAAATGATCAAA+TGG - tig0026572:53439-53458 None:intergenic 35.0%
TTGGTAAGACTAGACTAGAT+AGG + tig0026572:53548-53567 Msa1429870:intron 35.0%
AGACTAGACTAGATAGGATT+AGG + tig0026572:53554-53573 Msa1429870:intron 35.0%
ACACAATTAGAGAGAGAGTT+GGG + tig0026572:53581-53600 Msa1429870:intron 35.0%
TCTACCATCCTTTCTACTAT+AGG - tig0026572:53613-53632 None:intergenic 35.0%
AAAATAGGCTTAGGTGGTTT+GGG + tig0026572:53632-53651 Msa1429870:intron 35.0%
ACAAAGAGTAGATAAGATGG+AGG + tig0026572:53687-53706 Msa1429870:intron 35.0%
! TAATGAGTTGGGTCCAAATA+TGG + tig0026572:53769-53788 Msa1429870:intron 35.0%
TAGTCAAAGAGAATAAGCAC+GGG - tig0026572:53912-53931 None:intergenic 35.0%
CTAGTCAAAGAGAATAAGCA+CGG - tig0026572:53913-53932 None:intergenic 35.0%
AGAAATTAATTGAGAGGTGG+AGG + tig0026572:54070-54089 Msa1429870:intron 35.0%
GAAATTAATTGAGAGGTGGA+GGG + tig0026572:54071-54090 Msa1429870:intron 35.0%
TAGGAGACGTTAATTAGGAT+AGG - tig0026572:54161-54180 None:intergenic 35.0%
TGATTATAATTGGGACCAGA+AGG + tig0026572:54263-54282 Msa1429870:intron 35.0%
! ATCTTAAAAAGTACGCCTTC+TGG - tig0026572:54281-54300 None:intergenic 35.0%
TTCGGATTTATGTTCCTAGT+TGG + tig0026572:54320-54339 Msa1429870:intron 35.0%
ATTACCATCAGTTACGGTTA+GGG - tig0026572:54466-54485 None:intergenic 35.0%
TATTACCATCAGTTACGGTT+AGG - tig0026572:54467-54486 None:intergenic 35.0%
ATGGTAATATCATTCGTGAC+AGG + tig0026572:54478-54497 Msa1429870:intron 35.0%
TATGATTGAACTGGCAAAAC+AGG + tig0026572:54545-54564 Msa1429870:exon 35.0%
CTGGAAGGAAATGTTAATCT+TGG - tig0026572:54965-54984 None:intergenic 35.0%
ACAGTATGAGATGATTCCTA+CGG - tig0026572:54993-55012 None:intergenic 35.0%
ATCATCTCATACTGTGACAT+TGG + tig0026572:54998-55017 Msa1429870:three_prime_UTR 35.0%
! CACAAAGTTGTTCTGTTTTC+AGG + tig0026572:55043-55062 Msa1429870:three_prime_UTR 35.0%
AATGGATGACATGCTTCTCT+GGG - tig0026572:52892-52911 None:intergenic 40.0%
AAATGGATGACATGCTTCTC+TGG - tig0026572:52893-52912 None:intergenic 40.0%
ATCAGAAGGATGGTTTGACA+CGG - tig0026572:52916-52935 None:intergenic 40.0%
! TACTTTGAGGATCAGAAGGA+TGG - tig0026572:52926-52945 None:intergenic 40.0%
! TCACTACTTTGAGGATCAGA+AGG - tig0026572:52930-52949 None:intergenic 40.0%
TCTGATCCTCAAAGTAGTGA+TGG + tig0026572:52930-52949 Msa1429870:CDS 40.0%
TGAATGCCATCACTACTTTG+AGG - tig0026572:52939-52958 None:intergenic 40.0%
TTCTTCTGTGGAACCAAACA+AGG + tig0026572:53269-53288 Msa1429870:CDS 40.0%
GAACCAAACAAGGCAACAAT+GGG + tig0026572:53279-53298 Msa1429870:CDS 40.0%
! TGGGTTGGAAATAAAAGGTC+CGG + tig0026572:53298-53317 Msa1429870:CDS 40.0%
AAGTTGGGGAACCCAAAATA+AGG + tig0026572:53332-53351 Msa1429870:CDS 40.0%
! TTTTGCCCTTGCATGTTGTA+TGG + tig0026572:53448-53467 Msa1429870:intron 40.0%
TGGGCGGTTAAAAATCAACA+CGG + tig0026572:53481-53500 Msa1429870:intron 40.0%
CGGAAATCAAGTAAGTGTAG+CGG + tig0026572:53501-53520 Msa1429870:intron 40.0%
GACACAATTAGAGAGAGAGT+TGG + tig0026572:53580-53599 Msa1429870:intron 40.0%
CACAATTAGAGAGAGAGTTG+GGG + tig0026572:53582-53601 Msa1429870:intron 40.0%
AGCACCTATAGTAGAAAGGA+TGG + tig0026572:53606-53625 Msa1429870:intron 40.0%
GGATGGTAGAAAATAGGCTT+AGG + tig0026572:53623-53642 Msa1429870:intron 40.0%
TGGTAGAAAATAGGCTTAGG+TGG + tig0026572:53626-53645 Msa1429870:intron 40.0%
GAAAATAGGCTTAGGTGGTT+TGG + tig0026572:53631-53650 Msa1429870:intron 40.0%
GTTGGGTCCAAATATGGTTT+CGG + tig0026572:53775-53794 Msa1429870:intron 40.0%
CGTGCTTATTCTCTTTGACT+AGG + tig0026572:53911-53930 Msa1429870:intron 40.0%
GTTAATTAGGATAGGAGGCA+GGG - tig0026572:54153-54172 None:intergenic 40.0%
GAGACGTTAATTAGGATAGG+AGG - tig0026572:54158-54177 None:intergenic 40.0%
! TATTCCCCTCTAGATTTTGC+AGG + tig0026572:54572-54591 Msa1429870:three_prime_UTR 40.0%
! TAGATTTTGCAGGAGAGGAA+AGG + tig0026572:54582-54601 Msa1429870:three_prime_UTR 40.0%
! AGTACTTACTTTGGTGCAGA+TGG - tig0026572:54770-54789 None:intergenic 40.0%
TGTAAATCGGATATCCTCTG+CGG + tig0026572:54803-54822 Msa1429870:three_prime_UTR 40.0%
!! GGTGTTATGTTTTCACTGGA+TGG + tig0026572:54907-54926 Msa1429870:three_prime_UTR 40.0%
GATCAAATAGTCTGCAATCC+AGG + tig0026572:55216-55235 Msa1429870:three_prime_UTR 40.0%
GAATTGATCCTCTATAGTCC+TGG - tig0026572:55237-55256 None:intergenic 40.0%
! GAGCAGCAGTGCTATTGAAT+TGG + tig0026572:52848-52867 Msa1429870:CDS 45.0%
AGGATGGTTTGACACGGAAA+TGG - tig0026572:52910-52929 None:intergenic 45.0%
! ATGTGGTTGCTTTCCGTTCA+TGG + tig0026572:53091-53110 Msa1429870:intron 45.0%
TGTATGCAGGTCTTCTTCTG+TGG + tig0026572:53257-53276 Msa1429870:intron 45.0%
GGAACCAAACAAGGCAACAA+TGG + tig0026572:53278-53297 Msa1429870:CDS 45.0%
! CAACCCATTGTTGCCTTGTT+TGG - tig0026572:53285-53304 None:intergenic 45.0%
CAAACAAGGCAACAATGGGT+TGG + tig0026572:53283-53302 Msa1429870:CDS 45.0%
GGGTTGGAAATAAAAGGTCC+GGG + tig0026572:53299-53318 Msa1429870:CDS 45.0%
! TTGGGTTCCCCAACTTGTTT+CGG - tig0026572:53328-53347 None:intergenic 45.0%
GTTTCTGCATGAAGAGGCTT+AGG + tig0026572:53369-53388 Msa1429870:intron 45.0%
ATGAAGAGGCTTAGGTGGTT+TGG + tig0026572:53377-53396 Msa1429870:intron 45.0%
!! TAGGTGGTTTGGTCATTACC+AGG + tig0026572:53388-53407 Msa1429870:intron 45.0%
!! AGGTGGTTTGGTCATTACCA+GGG + tig0026572:53389-53408 Msa1429870:intron 45.0%
ATGCAATACTGTACTTGCCC+TGG - tig0026572:53409-53428 None:intergenic 45.0%
CCGTACCATACAACATGCAA+GGG - tig0026572:53456-53475 None:intergenic 45.0%
CCCTTGCATGTTGTATGGTA+CGG + tig0026572:53453-53472 Msa1429870:intron 45.0%
TCCGTACCATACAACATGCA+AGG - tig0026572:53457-53476 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + tig0026572:53461-53480 Msa1429870:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + tig0026572:53462-53481 Msa1429870:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + tig0026572:53509-53528 Msa1429870:intron 45.0%
AGGATGTTGCGTTGGATGAT+TGG + tig0026572:53529-53548 Msa1429870:intron 45.0%
GGGTAGCACCTATAGTAGAA+AGG + tig0026572:53602-53621 Msa1429870:intron 45.0%
GAGGAGAGTCTGATATGAAG+AGG + tig0026572:53706-53725 Msa1429870:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0026572:53838-53857 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0026572:53839-53858 None:intergenic 45.0%
CGTTAATTAGGATAGGAGGC+AGG - tig0026572:54154-54173 None:intergenic 45.0%
! GAGGGCATGTATGATTGAAC+TGG + tig0026572:54536-54555 Msa1429870:exon 45.0%
CTCTCCTGCAAAATCTAGAG+GGG - tig0026572:54579-54598 None:intergenic 45.0%
CCTCTCCTGCAAAATCTAGA+GGG - tig0026572:54580-54599 None:intergenic 45.0%
TCCTCTCCTGCAAAATCTAG+AGG - tig0026572:54581-54600 None:intergenic 45.0%
GTGAAGCTTGACTAAGCTGA+GGG - tig0026572:54837-54856 None:intergenic 45.0%
AGTGAAGCTTGACTAAGCTG+AGG - tig0026572:54838-54857 None:intergenic 45.0%
CTCATACTGTGACATTGGTG+AGG + tig0026572:55003-55022 Msa1429870:three_prime_UTR 45.0%
! CATTGGTGAGGCTTTGATGA+AGG + tig0026572:55015-55034 Msa1429870:three_prime_UTR 45.0%
!!! GTTGTTCTGTTTTCAGGTGC+AGG + tig0026572:55049-55068 Msa1429870:three_prime_UTR 45.0%
TTCCACAACTAAGGCAGTTG+CGG + tig0026572:55099-55118 Msa1429870:three_prime_UTR 45.0%
TCTGCAATCCAGGACTATAG+AGG + tig0026572:55226-55245 Msa1429870:three_prime_UTR 45.0%
CAACTTGGAGATCACCACTA+AGG - tig0026572:55271-55290 None:intergenic 45.0%
CTTAGTGGTGATCTCCAAGT+TGG + tig0026572:55269-55288 Msa1429870:three_prime_UTR 45.0%
! TGGTGATCTCCAAGTTGGAA+TGG + tig0026572:55274-55293 Msa1429870:three_prime_UTR 45.0%
! GGTGATCTCCAAGTTGGAAT+GGG + tig0026572:55275-55294 Msa1429870:three_prime_UTR 45.0%
! GTGATCTCCAAGTTGGAATG+GGG + tig0026572:55276-55295 Msa1429870:three_prime_UTR 45.0%
CAACAGAGCAGAGGTTGTCT+TGG + tig0026572:52714-52733 Msa1429870:CDS 50.0%
TCTGCATGAAGAGGCTTAGG+TGG + tig0026572:53372-53391 Msa1429870:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - tig0026572:53834-53853 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0026572:53840-53859 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0026572:53837-53856 Msa1429870:intron 50.0%
GAGAATAAGCACGGGCAGTA+AGG - tig0026572:53904-53923 None:intergenic 50.0%
GAGGTGGAGGGAGTTAAACT+TGG + tig0026572:54083-54102 Msa1429870:intron 50.0%
CCACCTACGAGAGTCTACTT+GGG + tig0026572:54347-54366 Msa1429870:CDS 50.0%
AGTCCCAAGTAGACTCTCGT+AGG - tig0026572:54353-54372 None:intergenic 50.0%
AGAGGAATGCGCTCAGGAAA+AGG - tig0026572:54382-54401 None:intergenic 50.0%
! ACTCTAAGAGGAATGCGCTC+AGG - tig0026572:54388-54407 None:intergenic 50.0%
TGCTCCCTAACCGTAACTGA+TGG + tig0026572:54459-54478 Msa1429870:intron 50.0%
! CCCTCTAGATTTTGCAGGAG+AGG + tig0026572:54577-54596 Msa1429870:three_prime_UTR 50.0%
TTTGCAGGAGAGGAAAGGTG+TGG + tig0026572:54587-54606 Msa1429870:three_prime_UTR 50.0%
ATCCGCAACTGCCTTAGTTG+TGG - tig0026572:55104-55123 None:intergenic 50.0%
! ATCTCCAAGTTGGAATGGGG+CGG + tig0026572:55279-55298 Msa1429870:three_prime_UTR 50.0%
CCTCTGCTCTGTTGCAAAGC+AGG - tig0026572:52708-52727 None:intergenic 55.0%
CCTGCTTTGCAACAGAGCAG+AGG + tig0026572:52705-52724 Msa1429870:CDS 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + tig0026572:53465-53484 Msa1429870:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + tig0026572:53521-53540 Msa1429870:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - tig0026572:53826-53845 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + tig0026572:53825-53844 Msa1429870:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + tig0026572:53826-53845 Msa1429870:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + tig0026572:53832-53851 Msa1429870:intron 55.0%
TCGTAGGTGGCGTTCCAACT+AGG - tig0026572:54337-54356 None:intergenic 55.0%
GCCACCTACGAGAGTCTACT+TGG + tig0026572:54346-54365 Msa1429870:CDS 55.0%
CCCAAGTAGACTCTCGTAGG+TGG - tig0026572:54350-54369 None:intergenic 55.0%
!! TGAGGGATTAGTCTCCGCAG+AGG - tig0026572:54820-54839 None:intergenic 55.0%
TTTCCTTCCAGTGCTGCCGT+AGG + tig0026572:54974-54993 Msa1429870:three_prime_UTR 55.0%
! ATTCCTACGGCAGCACTGGA+AGG - tig0026572:54980-54999 None:intergenic 55.0%
GATGATTCCTACGGCAGCAC+TGG - tig0026572:54984-55003 None:intergenic 55.0%
GGCGAGGCCGATGCATCTAA+GGG + tig0026572:52768-52787 Msa1429870:CDS 60.0%
TCCGGGCGTCCGAAACAAGT+TGG + tig0026572:53316-53335 Msa1429870:CDS 60.0%
! CCCAACTTGTTTCGGACGCC+CGG - tig0026572:53320-53339 None:intergenic 60.0%
CCGGGCGTCCGAAACAAGTT+GGG + tig0026572:53317-53336 Msa1429870:CDS 60.0%
CGGGCGTCCGAAACAAGTTG+GGG + tig0026572:53318-53337 Msa1429870:CDS 60.0%
GGGCGAGGCCGATGCATCTA+AGG + tig0026572:52767-52786 Msa1429870:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0026572 gene 52690 55302 52690 ID=Msa1429870;Name=Msa1429870
tig0026572 mRNA 52690 55302 52690 ID=Msa1429870-mRNA-1;Parent=Msa1429870;Name=Msa1429870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.75|1|1|1|4|749|168
tig0026572 exon 52690 52987 52690 ID=Msa1429870-mRNA-1:exon:6704;Parent=Msa1429870-mRNA-1
tig0026572 exon 53266 53353 53266 ID=Msa1429870-mRNA-1:exon:6705;Parent=Msa1429870-mRNA-1
tig0026572 exon 54339 54405 54339 ID=Msa1429870-mRNA-1:exon:6706;Parent=Msa1429870-mRNA-1
tig0026572 exon 54500 55302 54500 ID=Msa1429870-mRNA-1:exon:6707;Parent=Msa1429870-mRNA-1
tig0026572 CDS 52690 52987 52690 ID=Msa1429870-mRNA-1:cds;Parent=Msa1429870-mRNA-1
tig0026572 CDS 53266 53353 53266 ID=Msa1429870-mRNA-1:cds;Parent=Msa1429870-mRNA-1
tig0026572 CDS 54339 54405 54339 ID=Msa1429870-mRNA-1:cds;Parent=Msa1429870-mRNA-1
tig0026572 CDS 54500 54553 54500 ID=Msa1429870-mRNA-1:cds;Parent=Msa1429870-mRNA-1
tig0026572 three_prime_UTR 54554 55302 54554 ID=Msa1429870-mRNA-1:three_prime_utr;Parent=Msa1429870-mRNA-1
Gene Sequence

>Msa1429870

ATGCTTCTGGTTAAACCTGCTTTGCAACAGAGCAGAGGTTGTCTTGGATGTTTCTCAAAACCTCTTGTTTTATTAATGGGCGAGGCCGATGCATCTAAGGGACTAAAAACTCAAGCCCAAACAATGAACAACGACAACAGATCTGAAGATTTTTTTTGGAGCAGCAGTGCTATTGAATTGGATCATGGTGCTATTCAGTCCCAGAGAAGCATGTCATCCATTTCCGTGTCAAACCATCCTTCTGATCCTCAAAGTAGTGATGGCATTCAGACTGATTCTCCAGAATTTGTCAATCATGGTCTTCTTCTGTGGAACCAAACAAGGCAACAATGGGTTGGAAATAAAAGGTCCGGGCGTCCGAAACAAGTTGGGGAACCCAAAATAAGTTGGAACGCCACCTACGAGAGTCTACTTGGGACTAACAAGCCTTTTCCTGAGCGCATTCCTCTTAGAGAAATGATTGACTTTCTTGTTGATATATGGGAATTAGAGGGCATGTATGATTGA
Protein sequence

>Msa1429870

MLLVKPALQQSRGCLGCFSKPLVLLMGEADASKGLKTQAQTMNNDNRSEDFFWSSSAIELDHGAIQSQRSMSSISVSNHPSDPQSSDGIQTDSPEFVNHGLLLWNQTRQQWVGNKRSGRPKQVGEPKISWNATYESLLGTNKPFPERIPLREMIDFLVDIWELEGMYD*