Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434110 | XP_003625515.1 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.33e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434110 | sp|O82201|AP4S_ARATH | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.30e-95 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434110 | G7L0L8 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.11e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385740 | Msa1434110 | 0.949011 | 3.007379e-107 | -8.615850e-47 |
| Msa0827280 | Msa1434110 | 0.812300 | 4.545071e-51 | -8.615850e-47 |
| Msa1123790 | Msa1434110 | 0.975226 | 1.446008e-139 | -8.615850e-47 |
| Msa1169930 | Msa1434110 | 0.968249 | 2.077081e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434110 | MtrunA17_Chr7g0263061 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1434110 | MtrunA17_Chr8g0389621 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1434110 | MtrunA17_Chr5g0448531 | 42.754 | 138 | 79 | 0 | 3 | 140 | 2 | 139 | 4.79e-39 | 129 |
| Msa1434110 | MtrunA17_Chr1g0156591 | 46.763 | 139 | 74 | 0 | 3 | 141 | 2 | 140 | 1.60e-38 | 127 |
| Msa1434110 | MtrunA17_Chr8g0373311 | 37.838 | 148 | 79 | 3 | 3 | 141 | 2 | 145 | 5.90e-31 | 108 |
| Msa1434110 | MtrunA17_Chr5g0440601 | 44.248 | 113 | 59 | 1 | 24 | 136 | 4 | 112 | 6.99e-27 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434110 | AT2G19790.1 | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.32e-96 | 275 |
| Msa1434110 | AT1G47830.1 | 47.482 | 139 | 73 | 0 | 3 | 141 | 2 | 140 | 3.94e-39 | 129 |
| Msa1434110 | AT2G17380.1 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 1.01e-38 | 129 |
| Msa1434110 | AT4G35410.2 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 2.01e-37 | 125 |
| Msa1434110 | AT3G50860.1 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.78e-35 | 120 |
| Msa1434110 | AT3G50860.2 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.86e-35 | 119 |
| Msa1434110 | AT4G35410.1 | 46.392 | 97 | 52 | 0 | 3 | 99 | 2 | 98 | 1.42e-25 | 94.0 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATGAGCTTGCTATTT+TGG | 0.125124 | tig0027465:-34517 | Msa1434110:intron |
| GAAACCATGGATCGACATTT+TGG | 0.210891 | tig0027465:-34474 | Msa1434110:CDS |
| TCTGACTCCTATTCAGCTTA+TGG | 0.236679 | tig0027465:-34167 | Msa1434110:CDS |
| GGGGATCCGATTCGTGTTAA+TGG | 0.262612 | tig0027465:-35908 | Msa1434110:CDS |
| CAGAAATTGTGCACGAAGAT+TGG | 0.272515 | tig0027465:+36435 | None:intergenic |
| TACGAACGATTTCGCCTTCA+AGG | 0.388788 | tig0027465:+35818 | None:intergenic |
| AGAAATTGTGCACGAAGATT+GGG | 0.434378 | tig0027465:+36436 | None:intergenic |
| GAAGAACGACGAACCCTTGA+AGG | 0.434936 | tig0027465:-35832 | Msa1434110:CDS |
| TGTTCACCATTAACACGAAT+CGG | 0.437301 | tig0027465:+35902 | None:intergenic |
| TAGCAGAAAGAAAGAGAAAG+AGG | 0.446186 | tig0027465:-35940 | Msa1434110:five_prime_UTR |
| TATCATGTTTCATTTAGAAA+AGG | 0.473226 | tig0027465:-34254 | Msa1434110:CDS |
| TACAATCAAGCAGGATGGTA+AGG | 0.475920 | tig0027465:+33963 | None:intergenic |
| CACAATGGAGGAGGAGGAGG+AGG | 0.493900 | tig0027465:+35965 | None:intergenic |
| GCAACTACAAAATTGTATAC+AGG | 0.518035 | tig0027465:-34914 | Msa1434110:CDS |
| CATAATAAAGCAGCAGTGAC+AGG | 0.519864 | tig0027465:+34081 | None:intergenic |
| CAATGCGAAGGATCGAAGTA+AGG | 0.527385 | tig0027465:-36018 | Msa1434110:five_prime_UTR |
| ACGAACGATTTCGCCTTCAA+GGG | 0.529007 | tig0027465:+35819 | None:intergenic |
| TTTCTGGTTGGAGTTGATGA+CGG | 0.545713 | tig0027465:-34873 | Msa1434110:CDS |
| ACGCTGAGAGAATCGAGATT+CGG | 0.554440 | tig0027465:+36468 | None:intergenic |
| CACGGTCAATACAATCAAGC+AGG | 0.554604 | tig0027465:+33954 | None:intergenic |
| ACACACAATGGAGGAGGAGG+AGG | 0.555773 | tig0027465:+35962 | None:intergenic |
| TTTCTTTCTGCTACACACAA+TGG | 0.564098 | tig0027465:+35950 | None:intergenic |
| CCTCGCCCGTAATGAAAACC+AGG | 0.570058 | tig0027465:-35791 | Msa1434110:intron |
| GGTCATGAATGGTTGTATTG+TGG | 0.573456 | tig0027465:-34209 | Msa1434110:CDS |
| CCATGGTTTCGACTAAGAGA+TGG | 0.580792 | tig0027465:+34487 | None:intergenic |
| GTTGCCAAAATGTCGATCCA+TGG | 0.581731 | tig0027465:+34470 | None:intergenic |
| GTGTTAATGGTGAACAAACA+AGG | 0.585214 | tig0027465:-35895 | Msa1434110:CDS |
| GCTACACACAATGGAGGAGG+AGG | 0.590876 | tig0027465:+35959 | None:intergenic |
| TTGGAGGAAATGGTCATGAA+TGG | 0.600198 | tig0027465:-34220 | Msa1434110:CDS |
| ATCTTCGTGCACAATTTCTG+CGG | 0.601350 | tig0027465:-36432 | Msa1434110:intron |
| AAACATCGTAAGAGATACAA+AGG | 0.603461 | tig0027465:-34141 | Msa1434110:exon |
| CCATCTCTTAGTCGAAACCA+TGG | 0.604583 | tig0027465:-34487 | Msa1434110:CDS |
| TAGGACTTTCGTCAATGCGA+AGG | 0.606048 | tig0027465:-36030 | Msa1434110:five_prime_UTR |
| AAGCAAATAATCAGTAGTCA+CGG | 0.628691 | tig0027465:+33936 | None:intergenic |
| CTTTCTGCTACACACAATGG+AGG | 0.631136 | tig0027465:+35953 | None:intergenic |
| TCTGCTACACACAATGGAGG+AGG | 0.634679 | tig0027465:+35956 | None:intergenic |
| GTCAATACAATCAAGCAGGA+TGG | 0.642082 | tig0027465:+33958 | None:intergenic |
| GGTTGGAGTTGATGACGGCG+AGG | 0.687099 | tig0027465:-34868 | Msa1434110:intron |
| TTCGTCGTTCTTCAACAGTG+AGG | 0.697820 | tig0027465:+35842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATAAAATAAAAAACTT+AGG | - | tig0027465:35223-35242 | Msa1434110:intron | 10.0% |
| !!! | TAATTTCTTTTTTTCTTTTT+TGG | - | tig0027465:36485-36504 | Msa1434110:five_prime_UTR | 10.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | + | tig0027465:34640-34659 | None:intergenic | 15.0% |
| !! | ATAAATAATAAACAATGACA+AGG | + | tig0027465:34701-34720 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTTATCATAGA+TGG | - | tig0027465:35089-35108 | Msa1434110:intron | 15.0% |
| !!! | TTGAAATTTTTATCATAGAT+GGG | - | tig0027465:35090-35109 | Msa1434110:intron | 15.0% |
| !!! | TTTTCTTATTATTATAGCAG+TGG | - | tig0027465:34027-34046 | Msa1434110:three_prime_UTR | 20.0% |
| !! | AACTAAGTAAGATTTAATCA+AGG | + | tig0027465:34098-34117 | None:intergenic | 20.0% |
| !! | ATTAGCTAAAATTGAATGTA+AGG | + | tig0027465:34675-34694 | None:intergenic | 20.0% |
| !! | TCAAAATTGAAACAAAAACT+AGG | - | tig0027465:34783-34802 | Msa1434110:intron | 20.0% |
| !! | TAAATAAGATATAGATGTCT+TGG | - | tig0027465:35056-35075 | Msa1434110:intron | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | - | tig0027465:35577-35596 | Msa1434110:intron | 20.0% |
| !! | TTTACAACAGAAAATTCATT+CGG | + | tig0027465:35714-35733 | None:intergenic | 20.0% |
| !! | ACAATACTAATAATAACTTC+AGG | + | tig0027465:35745-35764 | None:intergenic | 20.0% |
| !! | CGATATCAATTTATTTACAA+TGG | + | tig0027465:35808-35827 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | - | tig0027465:36144-36163 | Msa1434110:intron | 20.0% |
| !! | TTCATGAAGAAAAAGAAAAT+TGG | + | tig0027465:36381-36400 | None:intergenic | 20.0% |
| ! | TGAATCAACAGACTAAAATT+TGG | + | tig0027465:34200-34219 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTAGTCTAGACT+AGG | - | tig0027465:34252-34271 | Msa1434110:CDS | 25.0% |
| ! | TTCTAATTTCCAACTTTACA+CGG | - | tig0027465:34284-34303 | Msa1434110:intron | 25.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | - | tig0027465:34469-34488 | Msa1434110:CDS | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | - | tig0027465:34470-34489 | Msa1434110:CDS | 25.0% |
| !!! | ATTTATTCAACCCTAGTTTT+AGG | - | tig0027465:34715-34734 | Msa1434110:intron | 25.0% |
| !!! | TTTATTCAACCCTAGTTTTA+GGG | - | tig0027465:34716-34735 | Msa1434110:intron | 25.0% |
| ! | TAGTTGACAATAATAACACA+GGG | + | tig0027465:35202-35221 | None:intergenic | 25.0% |
| ! | ATAGTTGACAATAATAACAC+AGG | + | tig0027465:35203-35222 | None:intergenic | 25.0% |
| ! | TATACAGTAATGAAAGAAAG+CGG | + | tig0027465:35255-35274 | None:intergenic | 25.0% |
| ! | TACTGTATATCAATACAACA+TGG | - | tig0027465:35266-35285 | Msa1434110:intron | 25.0% |
| ! | GTTAGTTACCAAAAACATAT+AGG | - | tig0027465:35379-35398 | Msa1434110:intron | 25.0% |
| ! | GAAGAAAACAATAGACATTA+TGG | + | tig0027465:36036-36055 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | + | tig0027465:36085-36104 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | - | tig0027465:36159-36178 | Msa1434110:intron | 25.0% |
| !!! | TCTTTTTTTCTTTTTTGGCA+TGG | - | tig0027465:36490-36509 | Msa1434110:five_prime_UTR | 25.0% |
| TTCGGAAGAAAAAAAAACGA+AGG | + | tig0027465:33915-33934 | None:intergenic | 30.0% | |
| ATCATGCATGATTCATTGAT+TGG | - | tig0027465:34051-34070 | Msa1434110:three_prime_UTR | 30.0% | |
| !! | AACAGACTAAAATTTGGTGT+TGG | + | tig0027465:34194-34213 | None:intergenic | 30.0% |
| ! | TATCCACCAAAATCTTTTAC+CGG | - | tig0027465:34334-34353 | Msa1434110:intron | 30.0% |
| GAGAAAGAGGAATAAAAATG+GGG | - | tig0027465:34471-34490 | Msa1434110:CDS | 30.0% | |
| AATCTATCATGGAGAACTTA+TGG | + | tig0027465:34903-34922 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | + | tig0027465:34914-34933 | None:intergenic | 30.0% |
| TAAGATATAGATGTCTTGGA+AGG | - | tig0027465:35060-35079 | Msa1434110:intron | 30.0% | |
| AGTTGACAATAATAACACAG+GGG | + | tig0027465:35201-35220 | None:intergenic | 30.0% | |
| AATCATTGACCTAATACCTT+AGG | + | tig0027465:35292-35311 | None:intergenic | 30.0% | |
| ! | CAACTGAACCTATATGTTTT+TGG | + | tig0027465:35390-35409 | None:intergenic | 30.0% |
| GCAACTACAAAATTGTATAC+AGG | - | tig0027465:35484-35503 | Msa1434110:intron | 30.0% | |
| !!! | CTATGCATCTTTGTTTTTTC+TGG | - | tig0027465:35509-35528 | Msa1434110:intron | 30.0% |
| ! | CTAGTTGATTTATACAAAGG+TGG | - | tig0027465:35580-35599 | Msa1434110:intron | 30.0% |
| TTACAATGGAAGTGATACAT+GGG | + | tig0027465:35794-35813 | None:intergenic | 30.0% | |
| TTTACAATGGAAGTGATACA+TGG | + | tig0027465:35795-35814 | None:intergenic | 30.0% | |
| AATTGATATCGCTTCAAATC+TGG | - | tig0027465:35817-35836 | Msa1434110:CDS | 30.0% | |
| !! | TTCCTTCCATATTCTGAAAT+TGG | - | tig0027465:36053-36072 | Msa1434110:intron | 30.0% |
| CTAAAGCCAATTTCAGAATA+TGG | + | tig0027465:36062-36081 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | - | tig0027465:36162-36181 | Msa1434110:intron | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | - | tig0027465:36168-36187 | Msa1434110:intron | 30.0% |
| ! | GTTTTATCCATAAGCTGAAT+AGG | + | tig0027465:36241-36260 | None:intergenic | 30.0% |
| AAACATCGTAAGAGATACAA+AGG | - | tig0027465:36257-36276 | Msa1434110:intron | 30.0% | |
| AAGCAAATAATCAGTAGTCA+CGG | + | tig0027465:36465-36484 | None:intergenic | 30.0% | |
| AGAAATTGTGCACGAAGATT+GGG | + | tig0027465:33965-33984 | None:intergenic | 35.0% | |
| ! | CATGATTCATTGATTGGTGA+GGG | - | tig0027465:34057-34076 | Msa1434110:three_prime_UTR | 35.0% |
| !! | TAAAATTTGGTGTTGGAGAC+TGG | + | tig0027465:34187-34206 | None:intergenic | 35.0% |
| !! | ACTGAGCTGATTGTTGTTTA+TGG | - | tig0027465:34308-34327 | Msa1434110:intron | 35.0% |
| !! | GAAATCGTGTTTTCAAGACA+AGG | + | tig0027465:34407-34426 | None:intergenic | 35.0% |
| TTTCTTTCTGCTACACACAA+TGG | + | tig0027465:34451-34470 | None:intergenic | 35.0% | |
| TAGCAGAAAGAAAGAGAAAG+AGG | - | tig0027465:34458-34477 | Msa1434110:intron | 35.0% | |
| TGTTCACCATTAACACGAAT+CGG | + | tig0027465:34499-34518 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | - | tig0027465:34503-34522 | Msa1434110:CDS | 35.0% | |
| CATAAACACTTGTGAGACTA+TGG | - | tig0027465:34835-34854 | Msa1434110:intron | 35.0% | |
| CATAGATGGGAGAAAATAGT+TGG | - | tig0027465:35103-35122 | Msa1434110:intron | 35.0% | |
| ! | CTACTTTCTTTTCCCCAATT+TGG | + | tig0027465:35146-35165 | None:intergenic | 35.0% |
| GGAAAAGAAAGTAGTTAGTG+AGG | - | tig0027465:35152-35171 | Msa1434110:intron | 35.0% | |
| TATCAATACAACATGGCCTA+AGG | - | tig0027465:35273-35292 | Msa1434110:intron | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | - | tig0027465:35438-35457 | Msa1434110:intron | 35.0% |
| !!! | GCATCTTTGTTTTTTCTGGT+TGG | - | tig0027465:35513-35532 | Msa1434110:intron | 35.0% |
| ATTGTTCATTCTACCTTCTG+TGG | - | tig0027465:35850-35869 | Msa1434110:CDS | 35.0% | |
| TCTGCAAAATTATCCACAGA+AGG | + | tig0027465:35866-35885 | None:intergenic | 35.0% | |
| GACATTATGGAAGTAATGTG+AGG | + | tig0027465:36023-36042 | None:intergenic | 35.0% | |
| AGCCAATTTCAGAATATGGA+AGG | + | tig0027465:36058-36077 | None:intergenic | 35.0% | |
| CAGAAATTGTGCACGAAGAT+TGG | + | tig0027465:33966-33985 | None:intergenic | 40.0% | |
| ATCTTCGTGCACAATTTCTG+CGG | - | tig0027465:33966-33985 | Msa1434110:three_prime_UTR | 40.0% | |
| ! | GCATGATTCATTGATTGGTG+AGG | - | tig0027465:34056-34075 | Msa1434110:three_prime_UTR | 40.0% |
| ! | GAACCGGTAAAAGATTTTGG+TGG | + | tig0027465:34340-34359 | None:intergenic | 40.0% |
| ! | GTCGAACCGGTAAAAGATTT+TGG | + | tig0027465:34343-34362 | None:intergenic | 40.0% |
| CATTGACGAAAGTCCTAATG+TGG | + | tig0027465:34365-34384 | None:intergenic | 40.0% | |
| !! | AGCATGCCTGGTTTTCATTA+CGG | + | tig0027465:34616-34635 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCCCAATTTGGC+GGG | + | tig0027465:35142-35161 | None:intergenic | 40.0% |
| ! | CTTTCTTTTCCCCAATTTGG+CGG | + | tig0027465:35143-35162 | None:intergenic | 40.0% |
| ! | ACAACATGGCCTAAGGTATT+AGG | - | tig0027465:35280-35299 | Msa1434110:intron | 40.0% |
| TGTATCAGCCAGATCAATCA+AGG | + | tig0027465:35429-35448 | None:intergenic | 40.0% | |
| !! | TTTCTGGTTGGAGTTGATGA+CGG | - | tig0027465:35525-35544 | Msa1434110:intron | 40.0% |
| !! | GTTTTGATCTAACTGACCAG+TGG | - | tig0027465:35642-35661 | Msa1434110:intron | 40.0% |
| GTCATGGCTTCAAATGTGAT+CGG | - | tig0027465:35664-35683 | Msa1434110:intron | 40.0% | |
| TCGGTTTCTTTAGACAAGCA+AGG | + | tig0027465:35695-35714 | None:intergenic | 40.0% | |
| ATTACGCTGAAGCTGAAATG+TGG | + | tig0027465:35769-35788 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | - | tig0027465:35881-35900 | Msa1434110:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | - | tig0027465:35924-35943 | Msa1434110:exon | 40.0% |
| TTGGAGGAAATGGTCATGAA+TGG | - | tig0027465:36178-36197 | Msa1434110:intron | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | - | tig0027465:36189-36208 | Msa1434110:intron | 40.0% | |
| TCTGACTCCTATTCAGCTTA+TGG | - | tig0027465:36231-36250 | Msa1434110:intron | 40.0% | |
| CATAATAAAGCAGCAGTGAC+AGG | + | tig0027465:36320-36339 | None:intergenic | 40.0% | |
| TACAATCAAGCAGGATGGTA+AGG | + | tig0027465:36438-36457 | None:intergenic | 40.0% | |
| GTCAATACAATCAAGCAGGA+TGG | + | tig0027465:36443-36462 | None:intergenic | 40.0% | |
| ACGCTGAGAGAATCGAGATT+CGG | + | tig0027465:33933-33952 | None:intergenic | 45.0% | |
| AGCTCAGTACCGTGTAAAGT+TGG | + | tig0027465:34296-34315 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTCGACCACATT+AGG | - | tig0027465:34349-34368 | Msa1434110:intron | 45.0% |
| AAGTCCTAATGTGGTCGAAC+CGG | + | tig0027465:34356-34375 | None:intergenic | 45.0% | |
| TAGGACTTTCGTCAATGCGA+AGG | - | tig0027465:34368-34387 | Msa1434110:intron | 45.0% | |
| CAATGCGAAGGATCGAAGTA+AGG | - | tig0027465:34380-34399 | Msa1434110:intron | 45.0% | |
| CTTTCTGCTACACACAATGG+AGG | + | tig0027465:34448-34467 | None:intergenic | 45.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | + | tig0027465:34559-34578 | None:intergenic | 45.0% | |
| ACGAACGATTTCGCCTTCAA+GGG | + | tig0027465:34582-34601 | None:intergenic | 45.0% | |
| TACGAACGATTTCGCCTTCA+AGG | + | tig0027465:34583-34602 | None:intergenic | 45.0% | |
| !! | GCATGCCTGGTTTTCATTAC+GGG | + | tig0027465:34615-34634 | None:intergenic | 45.0% |
| ! | GAAAAGAATGGAAGCATGCC+TGG | + | tig0027465:34628-34647 | None:intergenic | 45.0% |
| CCAAGCATGCCCTAAAACTA+GGG | + | tig0027465:34728-34747 | None:intergenic | 45.0% | |
| TCCAAGCATGCCCTAAAACT+AGG | + | tig0027465:34729-34748 | None:intergenic | 45.0% | |
| ! | TTCTTTTCCCCAATTTGGCG+GGG | + | tig0027465:35141-35160 | None:intergenic | 45.0% |
| TCCGTTCACCTTGATTGATC+TGG | - | tig0027465:35418-35437 | Msa1434110:intron | 45.0% | |
| GCCAGATCAATCAAGGTGAA+CGG | + | tig0027465:35422-35441 | None:intergenic | 45.0% | |
| ATCTAACTGACCAGTGGTCA+TGG | - | tig0027465:35648-35667 | Msa1434110:intron | 45.0% | |
| ! | ACATTTGAAGCCATGACCAC+TGG | + | tig0027465:35661-35680 | None:intergenic | 45.0% |
| CCATGGTTTCGACTAAGAGA+TGG | + | tig0027465:35914-35933 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | - | tig0027465:35911-35930 | Msa1434110:CDS | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | + | tig0027465:35931-35950 | None:intergenic | 45.0% | |
| CTGCTGTGACTAAGAGTCTT+TGG | - | tig0027465:35961-35980 | Msa1434110:five_prime_UTR | 45.0% | |
| CACGGTCAATACAATCAAGC+AGG | + | tig0027465:36447-36466 | None:intergenic | 45.0% | |
| !! | TTAATAAAATAAAAAACTTA+GGG | - | tig0027465:35224-35243 | Msa1434110:intron | 5.0% |
| TCTGCTACACACAATGGAGG+AGG | + | tig0027465:34445-34464 | None:intergenic | 50.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | - | tig0027465:34490-34509 | Msa1434110:CDS | 50.0% |
| GAAGAACGACGAACCCTTGA+AGG | - | tig0027465:34566-34585 | Msa1434110:intron | 50.0% | |
| !!! | CCCTAGTTTTAGGGCATGCT+TGG | - | tig0027465:34725-34744 | Msa1434110:intron | 50.0% |
| CTTTCACACCCCGCCAAATT+GGG | - | tig0027465:35130-35149 | Msa1434110:intron | 50.0% | |
| TTTCACACCCCGCCAAATTG+GGG | - | tig0027465:35131-35150 | Msa1434110:intron | 50.0% | |
| !! | GGATCGACATTTTGGCAACG+TGG | - | tig0027465:35932-35951 | Msa1434110:exon | 50.0% |
| ACACACAATGGAGGAGGAGG+AGG | + | tig0027465:34439-34458 | None:intergenic | 55.0% | |
| GCTACACACAATGGAGGAGG+AGG | + | tig0027465:34442-34461 | None:intergenic | 55.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | + | tig0027465:34610-34629 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | - | tig0027465:34607-34626 | Msa1434110:intron | 55.0% | |
| GGGCATGCTTGGATCATCGA+AGG | - | tig0027465:34736-34755 | Msa1434110:intron | 55.0% | |
| CCAATTTGGCGGGGTGTGAA+AGG | + | tig0027465:35132-35151 | None:intergenic | 55.0% | |
| CCTTTCACACCCCGCCAAAT+TGG | - | tig0027465:35129-35148 | Msa1434110:intron | 55.0% | |
| CACAATGGAGGAGGAGGAGG+AGG | + | tig0027465:34436-34455 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | - | tig0027465:35530-35549 | Msa1434110:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027465 | gene | 33897 | 36523 | 33897 | ID=Msa1434110;Name=Msa1434110 |
| tig0027465 | mRNA | 33897 | 36523 | 33897 | ID=Msa1434110-mRNA-1;Parent=Msa1434110;Name=Msa1434110-mRNA-1;_AED=0.23;_eAED=0.23;_QI=208|1|1|1|0.75|0.6|5|256|143 |
| tig0027465 | exon | 33897 | 34287 | 33897 | ID=Msa1434110-mRNA-1:exon:8990;Parent=Msa1434110-mRNA-1 |
| tig0027465 | exon | 34467 | 34535 | 34467 | ID=Msa1434110-mRNA-1:exon:8989;Parent=Msa1434110-mRNA-1 |
| tig0027465 | exon | 34869 | 34955 | 34869 | ID=Msa1434110-mRNA-1:exon:8988;Parent=Msa1434110-mRNA-1 |
| tig0027465 | exon | 35792 | 36049 | 35792 | ID=Msa1434110-mRNA-1:exon:8987;Parent=Msa1434110-mRNA-1 |
| tig0027465 | exon | 36433 | 36523 | 36433 | ID=Msa1434110-mRNA-1:exon:8986;Parent=Msa1434110-mRNA-1 |
| tig0027465 | five_prime_UTR | 36433 | 36523 | 36433 | ID=Msa1434110-mRNA-1:five_prime_utr;Parent=Msa1434110-mRNA-1 |
| tig0027465 | five_prime_UTR | 35933 | 36049 | 35933 | ID=Msa1434110-mRNA-1:five_prime_utr;Parent=Msa1434110-mRNA-1 |
| tig0027465 | CDS | 35792 | 35932 | 35792 | ID=Msa1434110-mRNA-1:cds;Parent=Msa1434110-mRNA-1 |
| tig0027465 | CDS | 34869 | 34955 | 34869 | ID=Msa1434110-mRNA-1:cds;Parent=Msa1434110-mRNA-1 |
| tig0027465 | CDS | 34467 | 34535 | 34467 | ID=Msa1434110-mRNA-1:cds;Parent=Msa1434110-mRNA-1 |
| tig0027465 | CDS | 34153 | 34287 | 34153 | ID=Msa1434110-mRNA-1:cds;Parent=Msa1434110-mRNA-1 |
| tig0027465 | three_prime_UTR | 33897 | 34152 | 33897 | ID=Msa1434110-mRNA-1:three_prime_utr;Parent=Msa1434110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
