Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123790 | XP_003625515.1 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.33e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123790 | sp|O82201|AP4S_ARATH | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.30e-95 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123790 | G7L0L8 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.11e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa1123790 | 0.810374 | 1.190119e-50 | -8.615850e-47 |
| Msa0667050 | Msa1123790 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0667790 | Msa1123790 | 0.815667 | 8.219970e-52 | -8.615850e-47 |
| Msa0687020 | Msa1123790 | 0.805973 | 1.030705e-49 | -8.615850e-47 |
| Msa0827280 | Msa1123790 | 0.839739 | 1.323142e-57 | -8.615850e-47 |
| Msa1089320 | Msa1123790 | 0.821714 | 3.486515e-53 | -8.615850e-47 |
| Msa1123790 | Msa1169930 | 0.950853 | 6.955374e-109 | -8.615850e-47 |
| Msa1123790 | Msa1204530 | 0.805642 | 1.209697e-49 | -8.615850e-47 |
| Msa1123790 | Msa1305710 | 0.803438 | 3.485180e-49 | -8.615850e-47 |
| Msa1123790 | Msa1331320 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa1123790 | Msa1331350 | 0.804243 | 2.372417e-49 | -8.615850e-47 |
| Msa1123790 | Msa1364210 | 0.822089 | 2.854251e-53 | -8.615850e-47 |
| Msa1123790 | Msa1385740 | 0.931220 | 5.211225e-94 | -8.615850e-47 |
| Msa1123790 | Msa1389880 | 0.803887 | 2.812272e-49 | -8.615850e-47 |
| Msa1123790 | Msa1434110 | 0.975226 | 1.446008e-139 | -8.615850e-47 |
| Msa0532980 | Msa1123790 | 0.807063 | 6.070732e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123790 | MtrunA17_Chr7g0263061 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1123790 | MtrunA17_Chr8g0389621 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1123790 | MtrunA17_Chr5g0448531 | 42.754 | 138 | 79 | 0 | 3 | 140 | 2 | 139 | 4.79e-39 | 129 |
| Msa1123790 | MtrunA17_Chr1g0156591 | 46.763 | 139 | 74 | 0 | 3 | 141 | 2 | 140 | 1.60e-38 | 127 |
| Msa1123790 | MtrunA17_Chr8g0373311 | 37.838 | 148 | 79 | 3 | 3 | 141 | 2 | 145 | 5.90e-31 | 108 |
| Msa1123790 | MtrunA17_Chr5g0440601 | 44.248 | 113 | 59 | 1 | 24 | 136 | 4 | 112 | 6.99e-27 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123790 | AT2G19790.1 | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.32e-96 | 275 |
| Msa1123790 | AT1G47830.1 | 47.482 | 139 | 73 | 0 | 3 | 141 | 2 | 140 | 3.94e-39 | 129 |
| Msa1123790 | AT2G17380.1 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 1.01e-38 | 129 |
| Msa1123790 | AT4G35410.2 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 2.01e-37 | 125 |
| Msa1123790 | AT3G50860.1 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.78e-35 | 120 |
| Msa1123790 | AT3G50860.2 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.86e-35 | 119 |
| Msa1123790 | AT4G35410.1 | 46.392 | 97 | 52 | 0 | 3 | 99 | 2 | 98 | 1.42e-25 | 94.0 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATGAGCTTGCTATTT+TGG | 0.125124 | 7_3:-74774128 | Msa1123790:intron |
| GAAACCATGGATCGACATTT+TGG | 0.210891 | 7_3:-74774085 | Msa1123790:CDS |
| TCTGACTCCTATTCAGCTTA+TGG | 0.236679 | 7_3:-74773778 | Msa1123790:CDS |
| GGGGATCCGATTCGTGTTAA+TGG | 0.262612 | 7_3:-74775519 | Msa1123790:CDS |
| CAGAAATTGTGCACGAAGAT+TGG | 0.272515 | 7_3:+74776048 | None:intergenic |
| TACGAACGATTTCGCCTTCA+AGG | 0.388788 | 7_3:+74775429 | None:intergenic |
| AGAAATTGTGCACGAAGATT+GGG | 0.434378 | 7_3:+74776049 | None:intergenic |
| GAAGAACGACGAACCCTTGA+AGG | 0.434936 | 7_3:-74775443 | Msa1123790:CDS |
| TGTTCACCATTAACACGAAT+CGG | 0.437301 | 7_3:+74775513 | None:intergenic |
| TAGCAGAAAGAAAGAGAAAG+AGG | 0.446186 | 7_3:-74775551 | Msa1123790:five_prime_UTR |
| TATCATGTTTCATTTAGAAA+AGG | 0.473226 | 7_3:-74773865 | Msa1123790:CDS |
| TACAATCAAGCAGGATGGTA+AGG | 0.475920 | 7_3:+74773574 | None:intergenic |
| CACAATGGAGGAGGAGGAGG+AGG | 0.493900 | 7_3:+74775576 | None:intergenic |
| GCAACTACAAAATTGTATAC+AGG | 0.518035 | 7_3:-74774525 | Msa1123790:CDS |
| CATAATAAAGCAGCAGTGAC+AGG | 0.519864 | 7_3:+74773692 | None:intergenic |
| CAATGCGAAGGATCGAAGTA+AGG | 0.527385 | 7_3:-74775629 | Msa1123790:five_prime_UTR |
| ACGAACGATTTCGCCTTCAA+GGG | 0.529007 | 7_3:+74775430 | None:intergenic |
| TTTCTGGTTGGAGTTGATGA+CGG | 0.545713 | 7_3:-74774484 | Msa1123790:CDS |
| ACGCTGAGAGAATCGAGATT+CGG | 0.554440 | 7_3:+74776081 | None:intergenic |
| CACGGTCAATACAATCAAGC+AGG | 0.554604 | 7_3:+74773565 | None:intergenic |
| ACACACAATGGAGGAGGAGG+AGG | 0.555773 | 7_3:+74775573 | None:intergenic |
| TTTCTTTCTGCTACACACAA+TGG | 0.564098 | 7_3:+74775561 | None:intergenic |
| CCTCGCCCGTAATGAAAACC+AGG | 0.570058 | 7_3:-74775402 | Msa1123790:intron |
| GGTCATGAATGGTTGTATTG+TGG | 0.573456 | 7_3:-74773820 | Msa1123790:CDS |
| CCATGGTTTCGACTAAGAGA+TGG | 0.580792 | 7_3:+74774098 | None:intergenic |
| GTTGCCAAAATGTCGATCCA+TGG | 0.581731 | 7_3:+74774081 | None:intergenic |
| GTGTTAATGGTGAACAAACA+AGG | 0.585214 | 7_3:-74775506 | Msa1123790:CDS |
| GCTACACACAATGGAGGAGG+AGG | 0.590876 | 7_3:+74775570 | None:intergenic |
| TTGGAGGAAATGGTCATGAA+TGG | 0.600198 | 7_3:-74773831 | Msa1123790:CDS |
| ATCTTCGTGCACAATTTCTG+CGG | 0.601350 | 7_3:-74776045 | Msa1123790:intron |
| AAACATCGTAAGAGATACAA+AGG | 0.603461 | 7_3:-74773752 | Msa1123790:exon |
| CCATCTCTTAGTCGAAACCA+TGG | 0.604583 | 7_3:-74774098 | Msa1123790:CDS |
| TAGGACTTTCGTCAATGCGA+AGG | 0.606048 | 7_3:-74775641 | Msa1123790:five_prime_UTR |
| AAGCAAATAATCAGTAGTCA+CGG | 0.628691 | 7_3:+74773547 | None:intergenic |
| CTTTCTGCTACACACAATGG+AGG | 0.631136 | 7_3:+74775564 | None:intergenic |
| TCTGCTACACACAATGGAGG+AGG | 0.634679 | 7_3:+74775567 | None:intergenic |
| GTCAATACAATCAAGCAGGA+TGG | 0.642082 | 7_3:+74773569 | None:intergenic |
| GGTTGGAGTTGATGACGGCG+AGG | 0.687099 | 7_3:-74774479 | Msa1123790:intron |
| TTCGTCGTTCTTCAACAGTG+AGG | 0.697820 | 7_3:+74775453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATAAAATAAAAAACTT+AGG | - | chr7_3:74774838-74774857 | Msa1123790:intron | 10.0% |
| !!! | TAATTTCTTTTTTTCTTTTT+TGG | - | chr7_3:74776100-74776119 | Msa1123790:five_prime_UTR | 10.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | + | chr7_3:74774255-74774274 | None:intergenic | 15.0% |
| !! | ATAAATAATAAACAATGACA+AGG | + | chr7_3:74774316-74774335 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTTATCATAGA+TGG | - | chr7_3:74774704-74774723 | Msa1123790:intron | 15.0% |
| !!! | TTGAAATTTTTATCATAGAT+GGG | - | chr7_3:74774705-74774724 | Msa1123790:intron | 15.0% |
| !!! | TTTTCTTATTATTATAGCAG+TGG | - | chr7_3:74773640-74773659 | Msa1123790:three_prime_UTR | 20.0% |
| !! | AACTAAGTAAGATTTAATCA+AGG | + | chr7_3:74773711-74773730 | None:intergenic | 20.0% |
| !! | ATTAGCTAAAATTGAATGTA+AGG | + | chr7_3:74774290-74774309 | None:intergenic | 20.0% |
| !! | TCAAAATTGAAACAAAAACT+AGG | - | chr7_3:74774398-74774417 | Msa1123790:intron | 20.0% |
| !! | TAAATAAGATATAGATGTCT+TGG | - | chr7_3:74774671-74774690 | Msa1123790:intron | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | - | chr7_3:74775192-74775211 | Msa1123790:intron | 20.0% |
| !! | TTTACAACAGAAAATTCATT+CGG | + | chr7_3:74775329-74775348 | None:intergenic | 20.0% |
| !! | ACAATACTAATAATAACTTC+AGG | + | chr7_3:74775360-74775379 | None:intergenic | 20.0% |
| !! | CGATATCAATTTATTTACAA+TGG | + | chr7_3:74775423-74775442 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | - | chr7_3:74775759-74775778 | Msa1123790:intron | 20.0% |
| !! | TTCATGAAGAAAAAGAAAAT+TGG | + | chr7_3:74775996-74776015 | None:intergenic | 20.0% |
| ! | TGAATCAACAGACTAAAATT+TGG | + | chr7_3:74773815-74773834 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTAGTCTAGACT+AGG | - | chr7_3:74773867-74773886 | Msa1123790:CDS | 25.0% |
| ! | TTCTAATTTCCAACTTTACA+CGG | - | chr7_3:74773899-74773918 | Msa1123790:intron | 25.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | - | chr7_3:74774084-74774103 | Msa1123790:CDS | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | - | chr7_3:74774085-74774104 | Msa1123790:CDS | 25.0% |
| !!! | ATTTATTCAACCCTAGTTTT+AGG | - | chr7_3:74774330-74774349 | Msa1123790:intron | 25.0% |
| !!! | TTTATTCAACCCTAGTTTTA+GGG | - | chr7_3:74774331-74774350 | Msa1123790:intron | 25.0% |
| ! | TAGTTGACAATAATAACACA+GGG | + | chr7_3:74774817-74774836 | None:intergenic | 25.0% |
| ! | ATAGTTGACAATAATAACAC+AGG | + | chr7_3:74774818-74774837 | None:intergenic | 25.0% |
| ! | TATACAGTAATGAAAGAAAG+CGG | + | chr7_3:74774870-74774889 | None:intergenic | 25.0% |
| ! | TACTGTATATCAATACAACA+TGG | - | chr7_3:74774881-74774900 | Msa1123790:intron | 25.0% |
| ! | GTTAGTTACCAAAAACATAT+AGG | - | chr7_3:74774994-74775013 | Msa1123790:intron | 25.0% |
| ! | GAAGAAAACAATAGACATTA+TGG | + | chr7_3:74775651-74775670 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | + | chr7_3:74775700-74775719 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | - | chr7_3:74775774-74775793 | Msa1123790:intron | 25.0% |
| !!! | TCTTTTTTTCTTTTTTGGCA+TGG | - | chr7_3:74776105-74776124 | Msa1123790:five_prime_UTR | 25.0% |
| CGGAAGAAAAAAAAAAACGA+AGG | + | chr7_3:74773526-74773545 | None:intergenic | 30.0% | |
| ATCATGCATGATTCATTGAT+TGG | - | chr7_3:74773664-74773683 | Msa1123790:three_prime_UTR | 30.0% | |
| !! | AACAGACTAAAATTTGGTGT+TGG | + | chr7_3:74773809-74773828 | None:intergenic | 30.0% |
| ! | TATCCACCAAAATCTTTTAC+CGG | - | chr7_3:74773949-74773968 | Msa1123790:intron | 30.0% |
| GAGAAAGAGGAATAAAAATG+GGG | - | chr7_3:74774086-74774105 | Msa1123790:CDS | 30.0% | |
| AATCTATCATGGAGAACTTA+TGG | + | chr7_3:74774518-74774537 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | + | chr7_3:74774529-74774548 | None:intergenic | 30.0% |
| TAAGATATAGATGTCTTGGA+AGG | - | chr7_3:74774675-74774694 | Msa1123790:intron | 30.0% | |
| AGTTGACAATAATAACACAG+GGG | + | chr7_3:74774816-74774835 | None:intergenic | 30.0% | |
| AATCATTGACCTAATACCTT+AGG | + | chr7_3:74774907-74774926 | None:intergenic | 30.0% | |
| ! | CAACTGAACCTATATGTTTT+TGG | + | chr7_3:74775005-74775024 | None:intergenic | 30.0% |
| GCAACTACAAAATTGTATAC+AGG | - | chr7_3:74775099-74775118 | Msa1123790:intron | 30.0% | |
| !!! | CTATGCATCTTTGTTTTTTC+TGG | - | chr7_3:74775124-74775143 | Msa1123790:intron | 30.0% |
| ! | CTAGTTGATTTATACAAAGG+TGG | - | chr7_3:74775195-74775214 | Msa1123790:intron | 30.0% |
| TTACAATGGAAGTGATACAT+GGG | + | chr7_3:74775409-74775428 | None:intergenic | 30.0% | |
| TTTACAATGGAAGTGATACA+TGG | + | chr7_3:74775410-74775429 | None:intergenic | 30.0% | |
| AATTGATATCGCTTCAAATC+TGG | - | chr7_3:74775432-74775451 | Msa1123790:CDS | 30.0% | |
| !! | TTCCTTCCATATTCTGAAAT+TGG | - | chr7_3:74775668-74775687 | Msa1123790:intron | 30.0% |
| CTAAAGCCAATTTCAGAATA+TGG | + | chr7_3:74775677-74775696 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | - | chr7_3:74775777-74775796 | Msa1123790:intron | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | - | chr7_3:74775783-74775802 | Msa1123790:intron | 30.0% |
| ! | GTTTTATCCATAAGCTGAAT+AGG | + | chr7_3:74775856-74775875 | None:intergenic | 30.0% |
| AAACATCGTAAGAGATACAA+AGG | - | chr7_3:74775872-74775891 | Msa1123790:intron | 30.0% | |
| AAGCAAATAATCAGTAGTCA+CGG | + | chr7_3:74776080-74776099 | None:intergenic | 30.0% | |
| AGAAATTGTGCACGAAGATT+GGG | + | chr7_3:74773578-74773597 | None:intergenic | 35.0% | |
| ! | CATGATTCATTGATTGGTGA+GGG | - | chr7_3:74773670-74773689 | Msa1123790:three_prime_UTR | 35.0% |
| !! | TAAAATTTGGTGTTGGAGAC+TGG | + | chr7_3:74773802-74773821 | None:intergenic | 35.0% |
| !! | ACTGAGCTGATTGTTGTTTA+TGG | - | chr7_3:74773923-74773942 | Msa1123790:intron | 35.0% |
| !! | GAAATCGTGTTTTCAAGACA+AGG | + | chr7_3:74774022-74774041 | None:intergenic | 35.0% |
| TTTCTTTCTGCTACACACAA+TGG | + | chr7_3:74774066-74774085 | None:intergenic | 35.0% | |
| TAGCAGAAAGAAAGAGAAAG+AGG | - | chr7_3:74774073-74774092 | Msa1123790:intron | 35.0% | |
| TGTTCACCATTAACACGAAT+CGG | + | chr7_3:74774114-74774133 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | - | chr7_3:74774118-74774137 | Msa1123790:CDS | 35.0% | |
| CATAAACACTTGTGAGACTA+TGG | - | chr7_3:74774450-74774469 | Msa1123790:intron | 35.0% | |
| CATAGATGGGAGAAAATAGT+TGG | - | chr7_3:74774718-74774737 | Msa1123790:intron | 35.0% | |
| ! | CTACTTTCTTTTCCCCAATT+TGG | + | chr7_3:74774761-74774780 | None:intergenic | 35.0% |
| GGAAAAGAAAGTAGTTAGTG+AGG | - | chr7_3:74774767-74774786 | Msa1123790:intron | 35.0% | |
| TATCAATACAACATGGCCTA+AGG | - | chr7_3:74774888-74774907 | Msa1123790:intron | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | - | chr7_3:74775053-74775072 | Msa1123790:intron | 35.0% |
| !!! | GCATCTTTGTTTTTTCTGGT+TGG | - | chr7_3:74775128-74775147 | Msa1123790:intron | 35.0% |
| ATTGTTCATTCTACCTTCTG+TGG | - | chr7_3:74775465-74775484 | Msa1123790:CDS | 35.0% | |
| TCTGCAAAATTATCCACAGA+AGG | + | chr7_3:74775481-74775500 | None:intergenic | 35.0% | |
| GACATTATGGAAGTAATGTG+AGG | + | chr7_3:74775638-74775657 | None:intergenic | 35.0% | |
| AGCCAATTTCAGAATATGGA+AGG | + | chr7_3:74775673-74775692 | None:intergenic | 35.0% | |
| CAGAAATTGTGCACGAAGAT+TGG | + | chr7_3:74773579-74773598 | None:intergenic | 40.0% | |
| ATCTTCGTGCACAATTTCTG+CGG | - | chr7_3:74773579-74773598 | Msa1123790:three_prime_UTR | 40.0% | |
| ! | GCATGATTCATTGATTGGTG+AGG | - | chr7_3:74773669-74773688 | Msa1123790:three_prime_UTR | 40.0% |
| ! | GAACCGGTAAAAGATTTTGG+TGG | + | chr7_3:74773955-74773974 | None:intergenic | 40.0% |
| ! | GTCGAACCGGTAAAAGATTT+TGG | + | chr7_3:74773958-74773977 | None:intergenic | 40.0% |
| CATTGACGAAAGTCCTAATG+TGG | + | chr7_3:74773980-74773999 | None:intergenic | 40.0% | |
| !! | AGCATGCCTGGTTTTCATTA+CGG | + | chr7_3:74774231-74774250 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCCCAATTTGGC+GGG | + | chr7_3:74774757-74774776 | None:intergenic | 40.0% |
| ! | CTTTCTTTTCCCCAATTTGG+CGG | + | chr7_3:74774758-74774777 | None:intergenic | 40.0% |
| ! | ACAACATGGCCTAAGGTATT+AGG | - | chr7_3:74774895-74774914 | Msa1123790:intron | 40.0% |
| TGTATCAGCCAGATCAATCA+AGG | + | chr7_3:74775044-74775063 | None:intergenic | 40.0% | |
| !! | TTTCTGGTTGGAGTTGATGA+CGG | - | chr7_3:74775140-74775159 | Msa1123790:intron | 40.0% |
| !! | GTTTTGATCTAACTGACCAG+TGG | - | chr7_3:74775257-74775276 | Msa1123790:intron | 40.0% |
| GTCATGGCTTCAAATGTGAT+CGG | - | chr7_3:74775279-74775298 | Msa1123790:intron | 40.0% | |
| TCGGTTTCTTTAGACAAGCA+AGG | + | chr7_3:74775310-74775329 | None:intergenic | 40.0% | |
| ATTACGCTGAAGCTGAAATG+TGG | + | chr7_3:74775384-74775403 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | - | chr7_3:74775496-74775515 | Msa1123790:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | - | chr7_3:74775539-74775558 | Msa1123790:exon | 40.0% |
| TTGGAGGAAATGGTCATGAA+TGG | - | chr7_3:74775793-74775812 | Msa1123790:intron | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | - | chr7_3:74775804-74775823 | Msa1123790:intron | 40.0% | |
| TCTGACTCCTATTCAGCTTA+TGG | - | chr7_3:74775846-74775865 | Msa1123790:intron | 40.0% | |
| CATAATAAAGCAGCAGTGAC+AGG | + | chr7_3:74775935-74775954 | None:intergenic | 40.0% | |
| TACAATCAAGCAGGATGGTA+AGG | + | chr7_3:74776053-74776072 | None:intergenic | 40.0% | |
| GTCAATACAATCAAGCAGGA+TGG | + | chr7_3:74776058-74776077 | None:intergenic | 40.0% | |
| ACGCTGAGAGAATCGAGATT+CGG | + | chr7_3:74773546-74773565 | None:intergenic | 45.0% | |
| AGCTCAGTACCGTGTAAAGT+TGG | + | chr7_3:74773911-74773930 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTCGACCACATT+AGG | - | chr7_3:74773964-74773983 | Msa1123790:intron | 45.0% |
| AAGTCCTAATGTGGTCGAAC+CGG | + | chr7_3:74773971-74773990 | None:intergenic | 45.0% | |
| TAGGACTTTCGTCAATGCGA+AGG | - | chr7_3:74773983-74774002 | Msa1123790:intron | 45.0% | |
| CAATGCGAAGGATCGAAGTA+AGG | - | chr7_3:74773995-74774014 | Msa1123790:intron | 45.0% | |
| CTTTCTGCTACACACAATGG+AGG | + | chr7_3:74774063-74774082 | None:intergenic | 45.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | + | chr7_3:74774174-74774193 | None:intergenic | 45.0% | |
| ACGAACGATTTCGCCTTCAA+GGG | + | chr7_3:74774197-74774216 | None:intergenic | 45.0% | |
| TACGAACGATTTCGCCTTCA+AGG | + | chr7_3:74774198-74774217 | None:intergenic | 45.0% | |
| !! | GCATGCCTGGTTTTCATTAC+GGG | + | chr7_3:74774230-74774249 | None:intergenic | 45.0% |
| ! | GAAAAGAATGGAAGCATGCC+TGG | + | chr7_3:74774243-74774262 | None:intergenic | 45.0% |
| CCAAGCATGCCCTAAAACTA+GGG | + | chr7_3:74774343-74774362 | None:intergenic | 45.0% | |
| TCCAAGCATGCCCTAAAACT+AGG | + | chr7_3:74774344-74774363 | None:intergenic | 45.0% | |
| ! | TTCTTTTCCCCAATTTGGCG+GGG | + | chr7_3:74774756-74774775 | None:intergenic | 45.0% |
| TCCGTTCACCTTGATTGATC+TGG | - | chr7_3:74775033-74775052 | Msa1123790:intron | 45.0% | |
| GCCAGATCAATCAAGGTGAA+CGG | + | chr7_3:74775037-74775056 | None:intergenic | 45.0% | |
| ATCTAACTGACCAGTGGTCA+TGG | - | chr7_3:74775263-74775282 | Msa1123790:intron | 45.0% | |
| ! | ACATTTGAAGCCATGACCAC+TGG | + | chr7_3:74775276-74775295 | None:intergenic | 45.0% |
| CCATGGTTTCGACTAAGAGA+TGG | + | chr7_3:74775529-74775548 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | - | chr7_3:74775526-74775545 | Msa1123790:exon | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | + | chr7_3:74775546-74775565 | None:intergenic | 45.0% | |
| CTGCTGTGACTAAGAGTCTT+TGG | - | chr7_3:74775576-74775595 | Msa1123790:five_prime_UTR | 45.0% | |
| CACGGTCAATACAATCAAGC+AGG | + | chr7_3:74776062-74776081 | None:intergenic | 45.0% | |
| !! | TTAATAAAATAAAAAACTTA+GGG | - | chr7_3:74774839-74774858 | Msa1123790:intron | 5.0% |
| TCTGCTACACACAATGGAGG+AGG | + | chr7_3:74774060-74774079 | None:intergenic | 50.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | - | chr7_3:74774105-74774124 | Msa1123790:CDS | 50.0% |
| GAAGAACGACGAACCCTTGA+AGG | - | chr7_3:74774181-74774200 | Msa1123790:intron | 50.0% | |
| !!! | CCCTAGTTTTAGGGCATGCT+TGG | - | chr7_3:74774340-74774359 | Msa1123790:intron | 50.0% |
| CTTTCACACCCCGCCAAATT+GGG | - | chr7_3:74774745-74774764 | Msa1123790:intron | 50.0% | |
| TTTCACACCCCGCCAAATTG+GGG | - | chr7_3:74774746-74774765 | Msa1123790:intron | 50.0% | |
| !! | GGATCGACATTTTGGCAACG+TGG | - | chr7_3:74775547-74775566 | Msa1123790:five_prime_UTR | 50.0% |
| ACACACAATGGAGGAGGAGG+AGG | + | chr7_3:74774054-74774073 | None:intergenic | 55.0% | |
| GCTACACACAATGGAGGAGG+AGG | + | chr7_3:74774057-74774076 | None:intergenic | 55.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | + | chr7_3:74774225-74774244 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | - | chr7_3:74774222-74774241 | Msa1123790:intron | 55.0% | |
| GGGCATGCTTGGATCATCGA+AGG | - | chr7_3:74774351-74774370 | Msa1123790:intron | 55.0% | |
| CCAATTTGGCGGGGTGTGAA+AGG | + | chr7_3:74774747-74774766 | None:intergenic | 55.0% | |
| CCTTTCACACCCCGCCAAAT+TGG | - | chr7_3:74774744-74774763 | Msa1123790:intron | 55.0% | |
| CACAATGGAGGAGGAGGAGG+AGG | + | chr7_3:74774051-74774070 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | - | chr7_3:74775145-74775164 | Msa1123790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74773508 | 74776138 | 74773508 | ID=Msa1123790;Name=Msa1123790 |
| chr7_3 | mRNA | 74773508 | 74776138 | 74773508 | ID=Msa1123790-mRNA-1;Parent=Msa1123790;Name=Msa1123790-mRNA-1;_AED=0.23;_eAED=0.23;_QI=210|1|1|1|0.75|0.6|5|256|143 |
| chr7_3 | exon | 74773508 | 74773898 | 74773508 | ID=Msa1123790-mRNA-1:exon:19948;Parent=Msa1123790-mRNA-1 |
| chr7_3 | exon | 74774078 | 74774146 | 74774078 | ID=Msa1123790-mRNA-1:exon:19947;Parent=Msa1123790-mRNA-1 |
| chr7_3 | exon | 74774480 | 74774566 | 74774480 | ID=Msa1123790-mRNA-1:exon:19946;Parent=Msa1123790-mRNA-1 |
| chr7_3 | exon | 74775403 | 74775660 | 74775403 | ID=Msa1123790-mRNA-1:exon:19945;Parent=Msa1123790-mRNA-1 |
| chr7_3 | exon | 74776046 | 74776138 | 74776046 | ID=Msa1123790-mRNA-1:exon:19944;Parent=Msa1123790-mRNA-1 |
| chr7_3 | five_prime_UTR | 74776046 | 74776138 | 74776046 | ID=Msa1123790-mRNA-1:five_prime_utr;Parent=Msa1123790-mRNA-1 |
| chr7_3 | five_prime_UTR | 74775544 | 74775660 | 74775544 | ID=Msa1123790-mRNA-1:five_prime_utr;Parent=Msa1123790-mRNA-1 |
| chr7_3 | CDS | 74775403 | 74775543 | 74775403 | ID=Msa1123790-mRNA-1:cds;Parent=Msa1123790-mRNA-1 |
| chr7_3 | CDS | 74774480 | 74774566 | 74774480 | ID=Msa1123790-mRNA-1:cds;Parent=Msa1123790-mRNA-1 |
| chr7_3 | CDS | 74774078 | 74774146 | 74774078 | ID=Msa1123790-mRNA-1:cds;Parent=Msa1123790-mRNA-1 |
| chr7_3 | CDS | 74773764 | 74773898 | 74773764 | ID=Msa1123790-mRNA-1:cds;Parent=Msa1123790-mRNA-1 |
| chr7_3 | three_prime_UTR | 74773508 | 74773763 | 74773508 | ID=Msa1123790-mRNA-1:three_prime_utr;Parent=Msa1123790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
