Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169930 | XP_003625515.1 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.33e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169930 | sp|O82201|AP4S_ARATH | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.30e-95 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169930 | G7L0L8 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.11e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1169930 | 0.808216 | 3.453387e-50 | -8.615850e-47 |
| Msa0667790 | Msa1169930 | 0.804833 | 1.786478e-49 | -8.615850e-47 |
| Msa0827280 | Msa1169930 | 0.829599 | 4.703336e-55 | -8.615850e-47 |
| Msa0127850 | Msa1169930 | 0.809153 | 2.177842e-50 | -8.615850e-47 |
| Msa1089320 | Msa1169930 | 0.807529 | 4.835923e-50 | -8.615850e-47 |
| Msa1123790 | Msa1169930 | 0.950853 | 6.955374e-109 | -8.615850e-47 |
| Msa1169930 | Msa1364210 | 0.808913 | 2.452067e-50 | -8.615850e-47 |
| Msa1169930 | Msa1385740 | 0.987206 | 1.974588e-169 | -8.615850e-47 |
| Msa1169930 | Msa1434110 | 0.968249 | 2.077081e-128 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169930 | MtrunA17_Chr7g0263061 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1169930 | MtrunA17_Chr8g0389621 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1169930 | MtrunA17_Chr5g0448531 | 42.754 | 138 | 79 | 0 | 3 | 140 | 2 | 139 | 4.79e-39 | 129 |
| Msa1169930 | MtrunA17_Chr1g0156591 | 46.763 | 139 | 74 | 0 | 3 | 141 | 2 | 140 | 1.60e-38 | 127 |
| Msa1169930 | MtrunA17_Chr8g0373311 | 37.838 | 148 | 79 | 3 | 3 | 141 | 2 | 145 | 5.90e-31 | 108 |
| Msa1169930 | MtrunA17_Chr5g0440601 | 44.248 | 113 | 59 | 1 | 24 | 136 | 4 | 112 | 6.99e-27 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169930 | AT2G19790.1 | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.32e-96 | 275 |
| Msa1169930 | AT1G47830.1 | 47.482 | 139 | 73 | 0 | 3 | 141 | 2 | 140 | 3.94e-39 | 129 |
| Msa1169930 | AT2G17380.1 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 1.01e-38 | 129 |
| Msa1169930 | AT4G35410.2 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 2.01e-37 | 125 |
| Msa1169930 | AT3G50860.1 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.78e-35 | 120 |
| Msa1169930 | AT3G50860.2 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.86e-35 | 119 |
| Msa1169930 | AT4G35410.1 | 46.392 | 97 | 52 | 0 | 3 | 99 | 2 | 98 | 1.42e-25 | 94.0 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATGAGCTTGCTATTT+TGG | 0.125124 | 7_4:-63033030 | Msa1169930:intron |
| GAAACCATGGATCGACATTT+TGG | 0.210891 | 7_4:-63032987 | Msa1169930:CDS |
| TCTGACTCCTATTCAGCTTA+TGG | 0.236679 | 7_4:-63032680 | Msa1169930:CDS |
| GGGGATCCGATTCGTGTTAA+TGG | 0.262612 | 7_4:-63034421 | Msa1169930:CDS |
| CAGAAATTGTGCACGAAGAT+TGG | 0.272515 | 7_4:+63034948 | None:intergenic |
| TACGAACGATTTCGCCTTCA+AGG | 0.388788 | 7_4:+63034331 | None:intergenic |
| AGAAATTGTGCACGAAGATT+GGG | 0.434378 | 7_4:+63034949 | None:intergenic |
| GAAGAACGACGAACCCTTGA+AGG | 0.434936 | 7_4:-63034345 | Msa1169930:CDS |
| TGTTCACCATTAACACGAAT+CGG | 0.437301 | 7_4:+63034415 | None:intergenic |
| TAGCAGAAAGAAAGAGAAAG+AGG | 0.446186 | 7_4:-63034453 | Msa1169930:five_prime_UTR |
| TATCATGTTTCATTTAGAAA+AGG | 0.473226 | 7_4:-63032767 | Msa1169930:CDS |
| TACAATCAAGCAGGATGGTA+AGG | 0.475920 | 7_4:+63032476 | None:intergenic |
| CACAATGGAGGAGGAGGAGG+AGG | 0.493900 | 7_4:+63034478 | None:intergenic |
| GCAACTACAAAATTGTATAC+AGG | 0.518035 | 7_4:-63033427 | Msa1169930:CDS |
| CATAATAAAGCAGCAGTGAC+AGG | 0.519864 | 7_4:+63032594 | None:intergenic |
| CAATGCGAAGGATCGAAGTA+AGG | 0.527385 | 7_4:-63034531 | Msa1169930:five_prime_UTR |
| ACGAACGATTTCGCCTTCAA+GGG | 0.529007 | 7_4:+63034332 | None:intergenic |
| TTTCTGGTTGGAGTTGATGA+CGG | 0.545713 | 7_4:-63033386 | Msa1169930:CDS |
| ACGCTGAGAGAATCGAGATT+CGG | 0.554440 | 7_4:+63034981 | None:intergenic |
| CACGGTCAATACAATCAAGC+AGG | 0.554604 | 7_4:+63032467 | None:intergenic |
| ACACACAATGGAGGAGGAGG+AGG | 0.555773 | 7_4:+63034475 | None:intergenic |
| TTTCTTTCTGCTACACACAA+TGG | 0.564098 | 7_4:+63034463 | None:intergenic |
| CCTCGCCCGTAATGAAAACC+AGG | 0.570058 | 7_4:-63034304 | Msa1169930:intron |
| GGTCATGAATGGTTGTATTG+TGG | 0.573456 | 7_4:-63032722 | Msa1169930:CDS |
| CCATGGTTTCGACTAAGAGA+TGG | 0.580792 | 7_4:+63033000 | None:intergenic |
| GTTGCCAAAATGTCGATCCA+TGG | 0.581731 | 7_4:+63032983 | None:intergenic |
| GTGTTAATGGTGAACAAACA+AGG | 0.585214 | 7_4:-63034408 | Msa1169930:CDS |
| GCTACACACAATGGAGGAGG+AGG | 0.590876 | 7_4:+63034472 | None:intergenic |
| TTGGAGGAAATGGTCATGAA+TGG | 0.600198 | 7_4:-63032733 | Msa1169930:CDS |
| ATCTTCGTGCACAATTTCTG+CGG | 0.601350 | 7_4:-63034945 | Msa1169930:intron |
| AAACATCGTAAGAGATACAA+AGG | 0.603461 | 7_4:-63032654 | Msa1169930:exon |
| CCATCTCTTAGTCGAAACCA+TGG | 0.604583 | 7_4:-63033000 | Msa1169930:CDS |
| TAGGACTTTCGTCAATGCGA+AGG | 0.606048 | 7_4:-63034543 | Msa1169930:five_prime_UTR |
| AAGCAAATAATCAGTAGTCA+CGG | 0.628691 | 7_4:+63032449 | None:intergenic |
| CTTTCTGCTACACACAATGG+AGG | 0.631136 | 7_4:+63034466 | None:intergenic |
| TCTGCTACACACAATGGAGG+AGG | 0.634679 | 7_4:+63034469 | None:intergenic |
| GTCAATACAATCAAGCAGGA+TGG | 0.642082 | 7_4:+63032471 | None:intergenic |
| GGTTGGAGTTGATGACGGCG+AGG | 0.687099 | 7_4:-63033381 | Msa1169930:intron |
| TTCGTCGTTCTTCAACAGTG+AGG | 0.697820 | 7_4:+63034355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATAAAATAAAAAACTT+AGG | - | chr7_4:63033737-63033756 | Msa1169930:intron | 10.0% |
| !!! | TAATTTCTTTTTTTCTTTTT+TGG | - | chr7_4:63034999-63035018 | Msa1169930:five_prime_UTR | 10.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | + | chr7_4:63033154-63033173 | None:intergenic | 15.0% |
| !! | ATAAATAATAAACAATGACA+AGG | + | chr7_4:63033215-63033234 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTTATCATAGA+TGG | - | chr7_4:63033603-63033622 | Msa1169930:intron | 15.0% |
| !!! | TTGAAATTTTTATCATAGAT+GGG | - | chr7_4:63033604-63033623 | Msa1169930:intron | 15.0% |
| !!! | TTTTCTTATTATTATAGCAG+TGG | - | chr7_4:63032541-63032560 | Msa1169930:three_prime_UTR | 20.0% |
| !! | AACTAAGTAAGATTTAATCA+AGG | + | chr7_4:63032612-63032631 | None:intergenic | 20.0% |
| !! | ATTAGCTAAAATTGAATGTA+AGG | + | chr7_4:63033189-63033208 | None:intergenic | 20.0% |
| !! | TCAAAATTGAAACAAAAACT+AGG | - | chr7_4:63033297-63033316 | Msa1169930:intron | 20.0% |
| !! | TAAATAAGATATAGATGTCT+TGG | - | chr7_4:63033570-63033589 | Msa1169930:intron | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | - | chr7_4:63034091-63034110 | Msa1169930:intron | 20.0% |
| !! | TTTACAACAGAAAATTCATT+CGG | + | chr7_4:63034228-63034247 | None:intergenic | 20.0% |
| !! | ACAATACTAATAATAACTTC+AGG | + | chr7_4:63034259-63034278 | None:intergenic | 20.0% |
| !! | CGATATCAATTTATTTACAA+TGG | + | chr7_4:63034322-63034341 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | - | chr7_4:63034658-63034677 | Msa1169930:intron | 20.0% |
| !! | TTCATGAAGAAAAAGAAAAT+TGG | + | chr7_4:63034895-63034914 | None:intergenic | 20.0% |
| ! | TGAATCAACAGACTAAAATT+TGG | + | chr7_4:63032714-63032733 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTAGTCTAGACT+AGG | - | chr7_4:63032766-63032785 | Msa1169930:CDS | 25.0% |
| ! | TTCTAATTTCCAACTTTACA+CGG | - | chr7_4:63032798-63032817 | Msa1169930:intron | 25.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | - | chr7_4:63032983-63033002 | Msa1169930:CDS | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | - | chr7_4:63032984-63033003 | Msa1169930:CDS | 25.0% |
| !!! | ATTTATTCAACCCTAGTTTT+AGG | - | chr7_4:63033229-63033248 | Msa1169930:intron | 25.0% |
| !!! | TTTATTCAACCCTAGTTTTA+GGG | - | chr7_4:63033230-63033249 | Msa1169930:intron | 25.0% |
| ! | TAGTTGACAATAATAACACA+GGG | + | chr7_4:63033716-63033735 | None:intergenic | 25.0% |
| ! | ATAGTTGACAATAATAACAC+AGG | + | chr7_4:63033717-63033736 | None:intergenic | 25.0% |
| ! | TATACAGTAATGAAAGAAAG+CGG | + | chr7_4:63033769-63033788 | None:intergenic | 25.0% |
| ! | TACTGTATATCAATACAACA+TGG | - | chr7_4:63033780-63033799 | Msa1169930:intron | 25.0% |
| ! | GTTAGTTACCAAAAACATAT+AGG | - | chr7_4:63033893-63033912 | Msa1169930:intron | 25.0% |
| ! | GAAGAAAACAATAGACATTA+TGG | + | chr7_4:63034550-63034569 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | + | chr7_4:63034599-63034618 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | - | chr7_4:63034673-63034692 | Msa1169930:intron | 25.0% |
| !!! | TCTTTTTTTCTTTTTTGGCA+TGG | - | chr7_4:63035004-63035023 | Msa1169930:five_prime_UTR | 25.0% |
| TCGGAAGAAAAAAAAAACGA+AGG | + | chr7_4:63032428-63032447 | None:intergenic | 30.0% | |
| ATCATGCATGATTCATTGAT+TGG | - | chr7_4:63032565-63032584 | Msa1169930:three_prime_UTR | 30.0% | |
| !! | AACAGACTAAAATTTGGTGT+TGG | + | chr7_4:63032708-63032727 | None:intergenic | 30.0% |
| ! | TATCCACCAAAATCTTTTAC+CGG | - | chr7_4:63032848-63032867 | Msa1169930:intron | 30.0% |
| GAGAAAGAGGAATAAAAATG+GGG | - | chr7_4:63032985-63033004 | Msa1169930:CDS | 30.0% | |
| AATCTATCATGGAGAACTTA+TGG | + | chr7_4:63033417-63033436 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | + | chr7_4:63033428-63033447 | None:intergenic | 30.0% |
| TAAGATATAGATGTCTTGGA+AGG | - | chr7_4:63033574-63033593 | Msa1169930:intron | 30.0% | |
| AGTTGACAATAATAACACAG+GGG | + | chr7_4:63033715-63033734 | None:intergenic | 30.0% | |
| AATCATTGACCTAATACCTT+AGG | + | chr7_4:63033806-63033825 | None:intergenic | 30.0% | |
| ! | CAACTGAACCTATATGTTTT+TGG | + | chr7_4:63033904-63033923 | None:intergenic | 30.0% |
| GCAACTACAAAATTGTATAC+AGG | - | chr7_4:63033998-63034017 | Msa1169930:intron | 30.0% | |
| !!! | CTATGCATCTTTGTTTTTTC+TGG | - | chr7_4:63034023-63034042 | Msa1169930:intron | 30.0% |
| ! | CTAGTTGATTTATACAAAGG+TGG | - | chr7_4:63034094-63034113 | Msa1169930:intron | 30.0% |
| TTACAATGGAAGTGATACAT+GGG | + | chr7_4:63034308-63034327 | None:intergenic | 30.0% | |
| TTTACAATGGAAGTGATACA+TGG | + | chr7_4:63034309-63034328 | None:intergenic | 30.0% | |
| AATTGATATCGCTTCAAATC+TGG | - | chr7_4:63034331-63034350 | Msa1169930:CDS | 30.0% | |
| !! | TTCCTTCCATATTCTGAAAT+TGG | - | chr7_4:63034567-63034586 | Msa1169930:intron | 30.0% |
| CTAAAGCCAATTTCAGAATA+TGG | + | chr7_4:63034576-63034595 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | - | chr7_4:63034676-63034695 | Msa1169930:intron | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | - | chr7_4:63034682-63034701 | Msa1169930:intron | 30.0% |
| ! | GTTTTATCCATAAGCTGAAT+AGG | + | chr7_4:63034755-63034774 | None:intergenic | 30.0% |
| AAACATCGTAAGAGATACAA+AGG | - | chr7_4:63034771-63034790 | Msa1169930:intron | 30.0% | |
| AAGCAAATAATCAGTAGTCA+CGG | + | chr7_4:63034979-63034998 | None:intergenic | 30.0% | |
| AGAAATTGTGCACGAAGATT+GGG | + | chr7_4:63032479-63032498 | None:intergenic | 35.0% | |
| ! | CATGATTCATTGATTGGTGA+GGG | - | chr7_4:63032571-63032590 | Msa1169930:three_prime_UTR | 35.0% |
| !! | TAAAATTTGGTGTTGGAGAC+TGG | + | chr7_4:63032701-63032720 | None:intergenic | 35.0% |
| !! | ACTGAGCTGATTGTTGTTTA+TGG | - | chr7_4:63032822-63032841 | Msa1169930:intron | 35.0% |
| !! | GAAATCGTGTTTTCAAGACA+AGG | + | chr7_4:63032921-63032940 | None:intergenic | 35.0% |
| TTTCTTTCTGCTACACACAA+TGG | + | chr7_4:63032965-63032984 | None:intergenic | 35.0% | |
| TAGCAGAAAGAAAGAGAAAG+AGG | - | chr7_4:63032972-63032991 | Msa1169930:intron | 35.0% | |
| TGTTCACCATTAACACGAAT+CGG | + | chr7_4:63033013-63033032 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | - | chr7_4:63033017-63033036 | Msa1169930:CDS | 35.0% | |
| CATAAACACTTGTGAGACTA+TGG | - | chr7_4:63033349-63033368 | Msa1169930:intron | 35.0% | |
| CATAGATGGGAGAAAATAGT+TGG | - | chr7_4:63033617-63033636 | Msa1169930:intron | 35.0% | |
| ! | CTACTTTCTTTTCCCCAATT+TGG | + | chr7_4:63033660-63033679 | None:intergenic | 35.0% |
| GGAAAAGAAAGTAGTTAGTG+AGG | - | chr7_4:63033666-63033685 | Msa1169930:intron | 35.0% | |
| TATCAATACAACATGGCCTA+AGG | - | chr7_4:63033787-63033806 | Msa1169930:intron | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | - | chr7_4:63033952-63033971 | Msa1169930:intron | 35.0% |
| !!! | GCATCTTTGTTTTTTCTGGT+TGG | - | chr7_4:63034027-63034046 | Msa1169930:intron | 35.0% |
| ATTGTTCATTCTACCTTCTG+TGG | - | chr7_4:63034364-63034383 | Msa1169930:CDS | 35.0% | |
| TCTGCAAAATTATCCACAGA+AGG | + | chr7_4:63034380-63034399 | None:intergenic | 35.0% | |
| GACATTATGGAAGTAATGTG+AGG | + | chr7_4:63034537-63034556 | None:intergenic | 35.0% | |
| AGCCAATTTCAGAATATGGA+AGG | + | chr7_4:63034572-63034591 | None:intergenic | 35.0% | |
| CAGAAATTGTGCACGAAGAT+TGG | + | chr7_4:63032480-63032499 | None:intergenic | 40.0% | |
| ATCTTCGTGCACAATTTCTG+CGG | - | chr7_4:63032480-63032499 | Msa1169930:three_prime_UTR | 40.0% | |
| ! | GCATGATTCATTGATTGGTG+AGG | - | chr7_4:63032570-63032589 | Msa1169930:three_prime_UTR | 40.0% |
| ! | GAACCGGTAAAAGATTTTGG+TGG | + | chr7_4:63032854-63032873 | None:intergenic | 40.0% |
| ! | GTCGAACCGGTAAAAGATTT+TGG | + | chr7_4:63032857-63032876 | None:intergenic | 40.0% |
| CATTGACGAAAGTCCTAATG+TGG | + | chr7_4:63032879-63032898 | None:intergenic | 40.0% | |
| !! | AGCATGCCTGGTTTTCATTA+CGG | + | chr7_4:63033130-63033149 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCCCAATTTGGC+GGG | + | chr7_4:63033656-63033675 | None:intergenic | 40.0% |
| ! | CTTTCTTTTCCCCAATTTGG+CGG | + | chr7_4:63033657-63033676 | None:intergenic | 40.0% |
| ! | ACAACATGGCCTAAGGTATT+AGG | - | chr7_4:63033794-63033813 | Msa1169930:intron | 40.0% |
| TGTATCAGCCAGATCAATCA+AGG | + | chr7_4:63033943-63033962 | None:intergenic | 40.0% | |
| !! | TTTCTGGTTGGAGTTGATGA+CGG | - | chr7_4:63034039-63034058 | Msa1169930:intron | 40.0% |
| !! | GTTTTGATCTAACTGACCAG+TGG | - | chr7_4:63034156-63034175 | Msa1169930:intron | 40.0% |
| GTCATGGCTTCAAATGTGAT+CGG | - | chr7_4:63034178-63034197 | Msa1169930:intron | 40.0% | |
| TCGGTTTCTTTAGACAAGCA+AGG | + | chr7_4:63034209-63034228 | None:intergenic | 40.0% | |
| ATTACGCTGAAGCTGAAATG+TGG | + | chr7_4:63034283-63034302 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | - | chr7_4:63034395-63034414 | Msa1169930:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | - | chr7_4:63034438-63034457 | Msa1169930:exon | 40.0% |
| TTGGAGGAAATGGTCATGAA+TGG | - | chr7_4:63034692-63034711 | Msa1169930:intron | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | - | chr7_4:63034703-63034722 | Msa1169930:intron | 40.0% | |
| TCTGACTCCTATTCAGCTTA+TGG | - | chr7_4:63034745-63034764 | Msa1169930:intron | 40.0% | |
| CATAATAAAGCAGCAGTGAC+AGG | + | chr7_4:63034834-63034853 | None:intergenic | 40.0% | |
| TACAATCAAGCAGGATGGTA+AGG | + | chr7_4:63034952-63034971 | None:intergenic | 40.0% | |
| GTCAATACAATCAAGCAGGA+TGG | + | chr7_4:63034957-63034976 | None:intergenic | 40.0% | |
| ACGCTGAGAGAATCGAGATT+CGG | + | chr7_4:63032447-63032466 | None:intergenic | 45.0% | |
| AGCTCAGTACCGTGTAAAGT+TGG | + | chr7_4:63032810-63032829 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTCGACCACATT+AGG | - | chr7_4:63032863-63032882 | Msa1169930:intron | 45.0% |
| AAGTCCTAATGTGGTCGAAC+CGG | + | chr7_4:63032870-63032889 | None:intergenic | 45.0% | |
| TAGGACTTTCGTCAATGCGA+AGG | - | chr7_4:63032882-63032901 | Msa1169930:intron | 45.0% | |
| CAATGCGAAGGATCGAAGTA+AGG | - | chr7_4:63032894-63032913 | Msa1169930:intron | 45.0% | |
| CTTTCTGCTACACACAATGG+AGG | + | chr7_4:63032962-63032981 | None:intergenic | 45.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | + | chr7_4:63033073-63033092 | None:intergenic | 45.0% | |
| ACGAACGATTTCGCCTTCAA+GGG | + | chr7_4:63033096-63033115 | None:intergenic | 45.0% | |
| TACGAACGATTTCGCCTTCA+AGG | + | chr7_4:63033097-63033116 | None:intergenic | 45.0% | |
| !! | GCATGCCTGGTTTTCATTAC+GGG | + | chr7_4:63033129-63033148 | None:intergenic | 45.0% |
| ! | GAAAAGAATGGAAGCATGCC+TGG | + | chr7_4:63033142-63033161 | None:intergenic | 45.0% |
| CCAAGCATGCCCTAAAACTA+GGG | + | chr7_4:63033242-63033261 | None:intergenic | 45.0% | |
| TCCAAGCATGCCCTAAAACT+AGG | + | chr7_4:63033243-63033262 | None:intergenic | 45.0% | |
| ! | TTCTTTTCCCCAATTTGGCG+GGG | + | chr7_4:63033655-63033674 | None:intergenic | 45.0% |
| TCCGTTCACCTTGATTGATC+TGG | - | chr7_4:63033932-63033951 | Msa1169930:intron | 45.0% | |
| GCCAGATCAATCAAGGTGAA+CGG | + | chr7_4:63033936-63033955 | None:intergenic | 45.0% | |
| ATCTAACTGACCAGTGGTCA+TGG | - | chr7_4:63034162-63034181 | Msa1169930:intron | 45.0% | |
| ! | ACATTTGAAGCCATGACCAC+TGG | + | chr7_4:63034175-63034194 | None:intergenic | 45.0% |
| CCATGGTTTCGACTAAGAGA+TGG | + | chr7_4:63034428-63034447 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | - | chr7_4:63034425-63034444 | Msa1169930:CDS | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | + | chr7_4:63034445-63034464 | None:intergenic | 45.0% | |
| CTGCTGTGACTAAGAGTCTT+TGG | - | chr7_4:63034475-63034494 | Msa1169930:five_prime_UTR | 45.0% | |
| CACGGTCAATACAATCAAGC+AGG | + | chr7_4:63034961-63034980 | None:intergenic | 45.0% | |
| !! | TTAATAAAATAAAAAACTTA+GGG | - | chr7_4:63033738-63033757 | Msa1169930:intron | 5.0% |
| TCTGCTACACACAATGGAGG+AGG | + | chr7_4:63032959-63032978 | None:intergenic | 50.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | - | chr7_4:63033004-63033023 | Msa1169930:CDS | 50.0% |
| GAAGAACGACGAACCCTTGA+AGG | - | chr7_4:63033080-63033099 | Msa1169930:intron | 50.0% | |
| !!! | CCCTAGTTTTAGGGCATGCT+TGG | - | chr7_4:63033239-63033258 | Msa1169930:intron | 50.0% |
| CTTTCACACCCCGCCAAATT+GGG | - | chr7_4:63033644-63033663 | Msa1169930:intron | 50.0% | |
| TTTCACACCCCGCCAAATTG+GGG | - | chr7_4:63033645-63033664 | Msa1169930:intron | 50.0% | |
| !! | GGATCGACATTTTGGCAACG+TGG | - | chr7_4:63034446-63034465 | Msa1169930:five_prime_UTR | 50.0% |
| ACACACAATGGAGGAGGAGG+AGG | + | chr7_4:63032953-63032972 | None:intergenic | 55.0% | |
| GCTACACACAATGGAGGAGG+AGG | + | chr7_4:63032956-63032975 | None:intergenic | 55.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | + | chr7_4:63033124-63033143 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | - | chr7_4:63033121-63033140 | Msa1169930:intron | 55.0% | |
| GGGCATGCTTGGATCATCGA+AGG | - | chr7_4:63033250-63033269 | Msa1169930:intron | 55.0% | |
| CCAATTTGGCGGGGTGTGAA+AGG | + | chr7_4:63033646-63033665 | None:intergenic | 55.0% | |
| CCTTTCACACCCCGCCAAAT+TGG | - | chr7_4:63033643-63033662 | Msa1169930:intron | 55.0% | |
| CACAATGGAGGAGGAGGAGG+AGG | + | chr7_4:63032950-63032969 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | - | chr7_4:63034044-63034063 | Msa1169930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 63032410 | 63035037 | 63032410 | ID=Msa1169930;Name=Msa1169930 |
| chr7_4 | mRNA | 63032410 | 63035037 | 63032410 | ID=Msa1169930-mRNA-1;Parent=Msa1169930;Name=Msa1169930-mRNA-1;_AED=0.23;_eAED=0.23;_QI=209|1|1|1|0.75|0.6|5|256|143 |
| chr7_4 | exon | 63032410 | 63032800 | 63032410 | ID=Msa1169930-mRNA-1:exon:20132;Parent=Msa1169930-mRNA-1 |
| chr7_4 | exon | 63032980 | 63033048 | 63032980 | ID=Msa1169930-mRNA-1:exon:20131;Parent=Msa1169930-mRNA-1 |
| chr7_4 | exon | 63033382 | 63033468 | 63033382 | ID=Msa1169930-mRNA-1:exon:20130;Parent=Msa1169930-mRNA-1 |
| chr7_4 | exon | 63034305 | 63034562 | 63034305 | ID=Msa1169930-mRNA-1:exon:20129;Parent=Msa1169930-mRNA-1 |
| chr7_4 | exon | 63034946 | 63035037 | 63034946 | ID=Msa1169930-mRNA-1:exon:20128;Parent=Msa1169930-mRNA-1 |
| chr7_4 | five_prime_UTR | 63034946 | 63035037 | 63034946 | ID=Msa1169930-mRNA-1:five_prime_utr;Parent=Msa1169930-mRNA-1 |
| chr7_4 | five_prime_UTR | 63034446 | 63034562 | 63034446 | ID=Msa1169930-mRNA-1:five_prime_utr;Parent=Msa1169930-mRNA-1 |
| chr7_4 | CDS | 63034305 | 63034445 | 63034305 | ID=Msa1169930-mRNA-1:cds;Parent=Msa1169930-mRNA-1 |
| chr7_4 | CDS | 63033382 | 63033468 | 63033382 | ID=Msa1169930-mRNA-1:cds;Parent=Msa1169930-mRNA-1 |
| chr7_4 | CDS | 63032980 | 63033048 | 63032980 | ID=Msa1169930-mRNA-1:cds;Parent=Msa1169930-mRNA-1 |
| chr7_4 | CDS | 63032666 | 63032800 | 63032666 | ID=Msa1169930-mRNA-1:cds;Parent=Msa1169930-mRNA-1 |
| chr7_4 | three_prime_UTR | 63032410 | 63032665 | 63032410 | ID=Msa1169930-mRNA-1:three_prime_utr;Parent=Msa1169930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
