Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385740 | XP_003625515.1 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.33e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385740 | sp|O82201|AP4S_ARATH | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.30e-95 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385740 | G7L0L8 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 1.11e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa1385740 | 0.806570 | 7.714645e-50 | -8.615850e-47 |
| Msa1385740 | Msa1434110 | 0.949011 | 3.007379e-107 | -8.615850e-47 |
| Msa0694840 | Msa1385740 | 0.802869 | 4.572426e-49 | -8.615850e-47 |
| Msa0827280 | Msa1385740 | 0.813157 | 2.950337e-51 | -8.615850e-47 |
| Msa0127850 | Msa1385740 | 0.804599 | 1.999425e-49 | -8.615850e-47 |
| Msa1123790 | Msa1385740 | 0.931220 | 5.211225e-94 | -8.615850e-47 |
| Msa1169930 | Msa1385740 | 0.987206 | 1.974588e-169 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385740 | MtrunA17_Chr7g0263061 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1385740 | MtrunA17_Chr8g0389621 | 100.000 | 143 | 0 | 0 | 1 | 143 | 1 | 143 | 2.15e-104 | 294 |
| Msa1385740 | MtrunA17_Chr5g0448531 | 42.754 | 138 | 79 | 0 | 3 | 140 | 2 | 139 | 4.79e-39 | 129 |
| Msa1385740 | MtrunA17_Chr1g0156591 | 46.763 | 139 | 74 | 0 | 3 | 141 | 2 | 140 | 1.60e-38 | 127 |
| Msa1385740 | MtrunA17_Chr8g0373311 | 37.838 | 148 | 79 | 3 | 3 | 141 | 2 | 145 | 5.90e-31 | 108 |
| Msa1385740 | MtrunA17_Chr5g0440601 | 44.248 | 113 | 59 | 1 | 24 | 136 | 4 | 112 | 6.99e-27 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385740 | AT2G19790.1 | 90.845 | 142 | 13 | 0 | 1 | 142 | 1 | 142 | 1.32e-96 | 275 |
| Msa1385740 | AT1G47830.1 | 47.482 | 139 | 73 | 0 | 3 | 141 | 2 | 140 | 3.94e-39 | 129 |
| Msa1385740 | AT2G17380.1 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 1.01e-38 | 129 |
| Msa1385740 | AT4G35410.2 | 42.446 | 139 | 80 | 0 | 3 | 141 | 2 | 140 | 2.01e-37 | 125 |
| Msa1385740 | AT3G50860.1 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.78e-35 | 120 |
| Msa1385740 | AT3G50860.2 | 40.278 | 144 | 81 | 1 | 3 | 141 | 2 | 145 | 3.86e-35 | 119 |
| Msa1385740 | AT4G35410.1 | 46.392 | 97 | 52 | 0 | 3 | 99 | 2 | 98 | 1.42e-25 | 94.0 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAATGAGCTTGCTATTT+TGG | 0.125124 | tig0020776:-29738 | Msa1385740:intron |
| GAAACCATGGATCGACATTT+TGG | 0.210891 | tig0020776:-29695 | Msa1385740:CDS |
| TCTGACTCCTATTCAGCTTA+TGG | 0.236679 | tig0020776:-29388 | Msa1385740:CDS |
| GGGGATCCGATTCGTGTTAA+TGG | 0.262612 | tig0020776:-31129 | Msa1385740:CDS |
| CAGAAATTGTGCACGAAGAT+TGG | 0.272515 | tig0020776:+31656 | None:intergenic |
| TACGAACGATTTCGCCTTCA+AGG | 0.388788 | tig0020776:+31039 | None:intergenic |
| AGAAATTGTGCACGAAGATT+GGG | 0.434378 | tig0020776:+31657 | None:intergenic |
| GAAGAACGACGAACCCTTGA+AGG | 0.434936 | tig0020776:-31053 | Msa1385740:CDS |
| TGTTCACCATTAACACGAAT+CGG | 0.437301 | tig0020776:+31123 | None:intergenic |
| TAGCAGAAAGAAAGAGAAAG+AGG | 0.446186 | tig0020776:-31161 | Msa1385740:five_prime_UTR |
| TATCATGTTTCATTTAGAAA+AGG | 0.473226 | tig0020776:-29475 | Msa1385740:CDS |
| TACAATCAAGCAGGATGGTA+AGG | 0.475920 | tig0020776:+29184 | None:intergenic |
| CACAATGGAGGAGGAGGAGG+AGG | 0.493900 | tig0020776:+31186 | None:intergenic |
| GCAACTACAAAATTGTATAC+AGG | 0.518035 | tig0020776:-30135 | Msa1385740:CDS |
| CATAATAAAGCAGCAGTGAC+AGG | 0.519864 | tig0020776:+29302 | None:intergenic |
| CAATGCGAAGGATCGAAGTA+AGG | 0.527385 | tig0020776:-31239 | Msa1385740:five_prime_UTR |
| ACGAACGATTTCGCCTTCAA+GGG | 0.529007 | tig0020776:+31040 | None:intergenic |
| TTTCTGGTTGGAGTTGATGA+CGG | 0.545713 | tig0020776:-30094 | Msa1385740:CDS |
| ACGCTGAGAGAATCGAGATT+CGG | 0.554440 | tig0020776:+31689 | None:intergenic |
| CACGGTCAATACAATCAAGC+AGG | 0.554604 | tig0020776:+29175 | None:intergenic |
| ACACACAATGGAGGAGGAGG+AGG | 0.555773 | tig0020776:+31183 | None:intergenic |
| TTTCTTTCTGCTACACACAA+TGG | 0.564098 | tig0020776:+31171 | None:intergenic |
| CCTCGCCCGTAATGAAAACC+AGG | 0.570058 | tig0020776:-31012 | Msa1385740:intron |
| GGTCATGAATGGTTGTATTG+TGG | 0.573456 | tig0020776:-29430 | Msa1385740:CDS |
| CCATGGTTTCGACTAAGAGA+TGG | 0.580792 | tig0020776:+29708 | None:intergenic |
| GTTGCCAAAATGTCGATCCA+TGG | 0.581731 | tig0020776:+29691 | None:intergenic |
| GTGTTAATGGTGAACAAACA+AGG | 0.585214 | tig0020776:-31116 | Msa1385740:CDS |
| GCTACACACAATGGAGGAGG+AGG | 0.590876 | tig0020776:+31180 | None:intergenic |
| TTGGAGGAAATGGTCATGAA+TGG | 0.600198 | tig0020776:-29441 | Msa1385740:CDS |
| ATCTTCGTGCACAATTTCTG+CGG | 0.601350 | tig0020776:-31653 | Msa1385740:intron |
| AAACATCGTAAGAGATACAA+AGG | 0.603461 | tig0020776:-29362 | Msa1385740:exon |
| CCATCTCTTAGTCGAAACCA+TGG | 0.604583 | tig0020776:-29708 | Msa1385740:CDS |
| TAGGACTTTCGTCAATGCGA+AGG | 0.606048 | tig0020776:-31251 | Msa1385740:five_prime_UTR |
| AAGCAAATAATCAGTAGTCA+CGG | 0.628691 | tig0020776:+29157 | None:intergenic |
| CTTTCTGCTACACACAATGG+AGG | 0.631136 | tig0020776:+31174 | None:intergenic |
| TCTGCTACACACAATGGAGG+AGG | 0.634679 | tig0020776:+31177 | None:intergenic |
| GTCAATACAATCAAGCAGGA+TGG | 0.642082 | tig0020776:+29179 | None:intergenic |
| GGTTGGAGTTGATGACGGCG+AGG | 0.687099 | tig0020776:-30089 | Msa1385740:intron |
| TTCGTCGTTCTTCAACAGTG+AGG | 0.697820 | tig0020776:+31063 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATAAAATAAAAAACTT+AGG | - | tig0020776:30445-30464 | Msa1385740:intron | 10.0% |
| !!! | TAATTTCTTTTTTTCTTTTT+TGG | - | tig0020776:31707-31726 | Msa1385740:five_prime_UTR | 10.0% |
| !! | ATGAAAATAAAAGAAAAGAA+TGG | + | tig0020776:29862-29881 | None:intergenic | 15.0% |
| !! | ATAAATAATAAACAATGACA+AGG | + | tig0020776:29923-29942 | None:intergenic | 15.0% |
| !!! | TTTGAAATTTTTATCATAGA+TGG | - | tig0020776:30311-30330 | Msa1385740:intron | 15.0% |
| !!! | TTGAAATTTTTATCATAGAT+GGG | - | tig0020776:30312-30331 | Msa1385740:intron | 15.0% |
| !!! | TTTTCTTATTATTATAGCAG+TGG | - | tig0020776:29249-29268 | Msa1385740:three_prime_UTR | 20.0% |
| !! | AACTAAGTAAGATTTAATCA+AGG | + | tig0020776:29320-29339 | None:intergenic | 20.0% |
| !! | ATTAGCTAAAATTGAATGTA+AGG | + | tig0020776:29897-29916 | None:intergenic | 20.0% |
| !! | TCAAAATTGAAACAAAAACT+AGG | - | tig0020776:30005-30024 | Msa1385740:intron | 20.0% |
| !! | TAAATAAGATATAGATGTCT+TGG | - | tig0020776:30278-30297 | Msa1385740:intron | 20.0% |
| !!! | ATTCTAGTTGATTTATACAA+AGG | - | tig0020776:30799-30818 | Msa1385740:intron | 20.0% |
| !! | TTTACAACAGAAAATTCATT+CGG | + | tig0020776:30936-30955 | None:intergenic | 20.0% |
| !! | ACAATACTAATAATAACTTC+AGG | + | tig0020776:30967-30986 | None:intergenic | 20.0% |
| !! | CGATATCAATTTATTTACAA+TGG | + | tig0020776:31030-31049 | None:intergenic | 20.0% |
| !! | TATCATGTTTCATTTAGAAA+AGG | - | tig0020776:31366-31385 | Msa1385740:intron | 20.0% |
| !! | TTCATGAAGAAAAAGAAAAT+TGG | + | tig0020776:31603-31622 | None:intergenic | 20.0% |
| ! | TGAATCAACAGACTAAAATT+TGG | + | tig0020776:29422-29441 | None:intergenic | 25.0% |
| !!! | ATATAGTTTTAGTCTAGACT+AGG | - | tig0020776:29474-29493 | Msa1385740:CDS | 25.0% |
| ! | TTCTAATTTCCAACTTTACA+CGG | - | tig0020776:29506-29525 | Msa1385740:intron | 25.0% |
| ! | AAGAGAAAGAGGAATAAAAA+TGG | - | tig0020776:29691-29710 | Msa1385740:CDS | 25.0% |
| ! | AGAGAAAGAGGAATAAAAAT+GGG | - | tig0020776:29692-29711 | Msa1385740:CDS | 25.0% |
| !!! | ATTTATTCAACCCTAGTTTT+AGG | - | tig0020776:29937-29956 | Msa1385740:intron | 25.0% |
| !!! | TTTATTCAACCCTAGTTTTA+GGG | - | tig0020776:29938-29957 | Msa1385740:intron | 25.0% |
| ! | TAGTTGACAATAATAACACA+GGG | + | tig0020776:30424-30443 | None:intergenic | 25.0% |
| ! | ATAGTTGACAATAATAACAC+AGG | + | tig0020776:30425-30444 | None:intergenic | 25.0% |
| ! | TATACAGTAATGAAAGAAAG+CGG | + | tig0020776:30477-30496 | None:intergenic | 25.0% |
| ! | TACTGTATATCAATACAACA+TGG | - | tig0020776:30488-30507 | Msa1385740:intron | 25.0% |
| ! | GTTAGTTACCAAAAACATAT+AGG | - | tig0020776:30601-30620 | Msa1385740:intron | 25.0% |
| ! | GAAGAAAACAATAGACATTA+TGG | + | tig0020776:31258-31277 | None:intergenic | 25.0% |
| ! | AGAAACAAAAAATCAGTGTT+TGG | + | tig0020776:31307-31326 | None:intergenic | 25.0% |
| !!! | AGAAAAGGTACATTTTATGT+TGG | - | tig0020776:31381-31400 | Msa1385740:intron | 25.0% |
| !!! | TCTTTTTTTCTTTTTTGGCA+TGG | - | tig0020776:31712-31731 | Msa1385740:five_prime_UTR | 25.0% |
| TCGGAAGAAAAAAAAAACGA+AGG | + | tig0020776:29136-29155 | None:intergenic | 30.0% | |
| ATCATGCATGATTCATTGAT+TGG | - | tig0020776:29273-29292 | Msa1385740:three_prime_UTR | 30.0% | |
| !! | AACAGACTAAAATTTGGTGT+TGG | + | tig0020776:29416-29435 | None:intergenic | 30.0% |
| ! | TATCCACCAAAATCTTTTAC+CGG | - | tig0020776:29556-29575 | Msa1385740:intron | 30.0% |
| GAGAAAGAGGAATAAAAATG+GGG | - | tig0020776:29693-29712 | Msa1385740:CDS | 30.0% | |
| AATCTATCATGGAGAACTTA+TGG | + | tig0020776:30125-30144 | None:intergenic | 30.0% | |
| ! | GCTGATTTCATAATCTATCA+TGG | + | tig0020776:30136-30155 | None:intergenic | 30.0% |
| TAAGATATAGATGTCTTGGA+AGG | - | tig0020776:30282-30301 | Msa1385740:intron | 30.0% | |
| AGTTGACAATAATAACACAG+GGG | + | tig0020776:30423-30442 | None:intergenic | 30.0% | |
| AATCATTGACCTAATACCTT+AGG | + | tig0020776:30514-30533 | None:intergenic | 30.0% | |
| ! | CAACTGAACCTATATGTTTT+TGG | + | tig0020776:30612-30631 | None:intergenic | 30.0% |
| GCAACTACAAAATTGTATAC+AGG | - | tig0020776:30706-30725 | Msa1385740:intron | 30.0% | |
| !!! | CTATGCATCTTTGTTTTTTC+TGG | - | tig0020776:30731-30750 | Msa1385740:intron | 30.0% |
| ! | CTAGTTGATTTATACAAAGG+TGG | - | tig0020776:30802-30821 | Msa1385740:intron | 30.0% |
| TTACAATGGAAGTGATACAT+GGG | + | tig0020776:31016-31035 | None:intergenic | 30.0% | |
| TTTACAATGGAAGTGATACA+TGG | + | tig0020776:31017-31036 | None:intergenic | 30.0% | |
| AATTGATATCGCTTCAAATC+TGG | - | tig0020776:31039-31058 | Msa1385740:CDS | 30.0% | |
| !! | TTCCTTCCATATTCTGAAAT+TGG | - | tig0020776:31275-31294 | Msa1385740:intron | 30.0% |
| CTAAAGCCAATTTCAGAATA+TGG | + | tig0020776:31284-31303 | None:intergenic | 30.0% | |
| !! | AAAGGTACATTTTATGTTGG+AGG | - | tig0020776:31384-31403 | Msa1385740:intron | 30.0% |
| ! | ACATTTTATGTTGGAGGAAA+TGG | - | tig0020776:31390-31409 | Msa1385740:intron | 30.0% |
| ! | GTTTTATCCATAAGCTGAAT+AGG | + | tig0020776:31463-31482 | None:intergenic | 30.0% |
| AAACATCGTAAGAGATACAA+AGG | - | tig0020776:31479-31498 | Msa1385740:intron | 30.0% | |
| AAGCAAATAATCAGTAGTCA+CGG | + | tig0020776:31687-31706 | None:intergenic | 30.0% | |
| AGAAATTGTGCACGAAGATT+GGG | + | tig0020776:29187-29206 | None:intergenic | 35.0% | |
| ! | CATGATTCATTGATTGGTGA+GGG | - | tig0020776:29279-29298 | Msa1385740:three_prime_UTR | 35.0% |
| !! | TAAAATTTGGTGTTGGAGAC+TGG | + | tig0020776:29409-29428 | None:intergenic | 35.0% |
| !! | ACTGAGCTGATTGTTGTTTA+TGG | - | tig0020776:29530-29549 | Msa1385740:intron | 35.0% |
| !! | GAAATCGTGTTTTCAAGACA+AGG | + | tig0020776:29629-29648 | None:intergenic | 35.0% |
| TTTCTTTCTGCTACACACAA+TGG | + | tig0020776:29673-29692 | None:intergenic | 35.0% | |
| TAGCAGAAAGAAAGAGAAAG+AGG | - | tig0020776:29680-29699 | Msa1385740:intron | 35.0% | |
| TGTTCACCATTAACACGAAT+CGG | + | tig0020776:29721-29740 | None:intergenic | 35.0% | |
| GTGTTAATGGTGAACAAACA+AGG | - | tig0020776:29725-29744 | Msa1385740:CDS | 35.0% | |
| CATAAACACTTGTGAGACTA+TGG | - | tig0020776:30057-30076 | Msa1385740:intron | 35.0% | |
| CATAGATGGGAGAAAATAGT+TGG | - | tig0020776:30325-30344 | Msa1385740:intron | 35.0% | |
| ! | CTACTTTCTTTTCCCCAATT+TGG | + | tig0020776:30368-30387 | None:intergenic | 35.0% |
| GGAAAAGAAAGTAGTTAGTG+AGG | - | tig0020776:30374-30393 | Msa1385740:intron | 35.0% | |
| TATCAATACAACATGGCCTA+AGG | - | tig0020776:30495-30514 | Msa1385740:intron | 35.0% | |
| ! | TGGCTGATACATTTTTGTCA+TGG | - | tig0020776:30660-30679 | Msa1385740:intron | 35.0% |
| !!! | GCATCTTTGTTTTTTCTGGT+TGG | - | tig0020776:30735-30754 | Msa1385740:intron | 35.0% |
| ATTGTTCATTCTACCTTCTG+TGG | - | tig0020776:31072-31091 | Msa1385740:CDS | 35.0% | |
| TCTGCAAAATTATCCACAGA+AGG | + | tig0020776:31088-31107 | None:intergenic | 35.0% | |
| GACATTATGGAAGTAATGTG+AGG | + | tig0020776:31245-31264 | None:intergenic | 35.0% | |
| AGCCAATTTCAGAATATGGA+AGG | + | tig0020776:31280-31299 | None:intergenic | 35.0% | |
| CAGAAATTGTGCACGAAGAT+TGG | + | tig0020776:29188-29207 | None:intergenic | 40.0% | |
| ATCTTCGTGCACAATTTCTG+CGG | - | tig0020776:29188-29207 | Msa1385740:three_prime_UTR | 40.0% | |
| ! | GCATGATTCATTGATTGGTG+AGG | - | tig0020776:29278-29297 | Msa1385740:three_prime_UTR | 40.0% |
| ! | GAACCGGTAAAAGATTTTGG+TGG | + | tig0020776:29562-29581 | None:intergenic | 40.0% |
| ! | GTCGAACCGGTAAAAGATTT+TGG | + | tig0020776:29565-29584 | None:intergenic | 40.0% |
| CATTGACGAAAGTCCTAATG+TGG | + | tig0020776:29587-29606 | None:intergenic | 40.0% | |
| !! | AGCATGCCTGGTTTTCATTA+CGG | + | tig0020776:29838-29857 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCCCAATTTGGC+GGG | + | tig0020776:30364-30383 | None:intergenic | 40.0% |
| ! | CTTTCTTTTCCCCAATTTGG+CGG | + | tig0020776:30365-30384 | None:intergenic | 40.0% |
| ! | ACAACATGGCCTAAGGTATT+AGG | - | tig0020776:30502-30521 | Msa1385740:intron | 40.0% |
| TGTATCAGCCAGATCAATCA+AGG | + | tig0020776:30651-30670 | None:intergenic | 40.0% | |
| !! | TTTCTGGTTGGAGTTGATGA+CGG | - | tig0020776:30747-30766 | Msa1385740:intron | 40.0% |
| !! | GTTTTGATCTAACTGACCAG+TGG | - | tig0020776:30864-30883 | Msa1385740:intron | 40.0% |
| GTCATGGCTTCAAATGTGAT+CGG | - | tig0020776:30886-30905 | Msa1385740:intron | 40.0% | |
| TCGGTTTCTTTAGACAAGCA+AGG | + | tig0020776:30917-30936 | None:intergenic | 40.0% | |
| ATTACGCTGAAGCTGAAATG+TGG | + | tig0020776:30991-31010 | None:intergenic | 40.0% | |
| !!! | GCAGAATGAGCTTGCTATTT+TGG | - | tig0020776:31103-31122 | Msa1385740:CDS | 40.0% |
| ! | GAAACCATGGATCGACATTT+TGG | - | tig0020776:31146-31165 | Msa1385740:exon | 40.0% |
| TTGGAGGAAATGGTCATGAA+TGG | - | tig0020776:31400-31419 | Msa1385740:intron | 40.0% | |
| GGTCATGAATGGTTGTATTG+TGG | - | tig0020776:31411-31430 | Msa1385740:intron | 40.0% | |
| TCTGACTCCTATTCAGCTTA+TGG | - | tig0020776:31453-31472 | Msa1385740:intron | 40.0% | |
| CATAATAAAGCAGCAGTGAC+AGG | + | tig0020776:31542-31561 | None:intergenic | 40.0% | |
| TACAATCAAGCAGGATGGTA+AGG | + | tig0020776:31660-31679 | None:intergenic | 40.0% | |
| GTCAATACAATCAAGCAGGA+TGG | + | tig0020776:31665-31684 | None:intergenic | 40.0% | |
| ACGCTGAGAGAATCGAGATT+CGG | + | tig0020776:29155-29174 | None:intergenic | 45.0% | |
| AGCTCAGTACCGTGTAAAGT+TGG | + | tig0020776:29518-29537 | None:intergenic | 45.0% | |
| !! | TTTACCGGTTCGACCACATT+AGG | - | tig0020776:29571-29590 | Msa1385740:intron | 45.0% |
| AAGTCCTAATGTGGTCGAAC+CGG | + | tig0020776:29578-29597 | None:intergenic | 45.0% | |
| TAGGACTTTCGTCAATGCGA+AGG | - | tig0020776:29590-29609 | Msa1385740:intron | 45.0% | |
| CAATGCGAAGGATCGAAGTA+AGG | - | tig0020776:29602-29621 | Msa1385740:intron | 45.0% | |
| CTTTCTGCTACACACAATGG+AGG | + | tig0020776:29670-29689 | None:intergenic | 45.0% | |
| TTCGTCGTTCTTCAACAGTG+AGG | + | tig0020776:29781-29800 | None:intergenic | 45.0% | |
| ACGAACGATTTCGCCTTCAA+GGG | + | tig0020776:29804-29823 | None:intergenic | 45.0% | |
| TACGAACGATTTCGCCTTCA+AGG | + | tig0020776:29805-29824 | None:intergenic | 45.0% | |
| !! | GCATGCCTGGTTTTCATTAC+GGG | + | tig0020776:29837-29856 | None:intergenic | 45.0% |
| ! | GAAAAGAATGGAAGCATGCC+TGG | + | tig0020776:29850-29869 | None:intergenic | 45.0% |
| CCAAGCATGCCCTAAAACTA+GGG | + | tig0020776:29950-29969 | None:intergenic | 45.0% | |
| TCCAAGCATGCCCTAAAACT+AGG | + | tig0020776:29951-29970 | None:intergenic | 45.0% | |
| ! | TTCTTTTCCCCAATTTGGCG+GGG | + | tig0020776:30363-30382 | None:intergenic | 45.0% |
| TCCGTTCACCTTGATTGATC+TGG | - | tig0020776:30640-30659 | Msa1385740:intron | 45.0% | |
| GCCAGATCAATCAAGGTGAA+CGG | + | tig0020776:30644-30663 | None:intergenic | 45.0% | |
| ATCTAACTGACCAGTGGTCA+TGG | - | tig0020776:30870-30889 | Msa1385740:intron | 45.0% | |
| ! | ACATTTGAAGCCATGACCAC+TGG | + | tig0020776:30883-30902 | None:intergenic | 45.0% |
| CCATGGTTTCGACTAAGAGA+TGG | + | tig0020776:31136-31155 | None:intergenic | 45.0% | |
| CCATCTCTTAGTCGAAACCA+TGG | - | tig0020776:31133-31152 | Msa1385740:CDS | 45.0% | |
| GTTGCCAAAATGTCGATCCA+TGG | + | tig0020776:31153-31172 | None:intergenic | 45.0% | |
| CTGCTGTGACTAAGAGTCTT+TGG | - | tig0020776:31183-31202 | Msa1385740:five_prime_UTR | 45.0% | |
| CACGGTCAATACAATCAAGC+AGG | + | tig0020776:31669-31688 | None:intergenic | 45.0% | |
| !! | TTAATAAAATAAAAAACTTA+GGG | - | tig0020776:30446-30465 | Msa1385740:intron | 5.0% |
| TCTGCTACACACAATGGAGG+AGG | + | tig0020776:29667-29686 | None:intergenic | 50.0% | |
| ! | GGGGATCCGATTCGTGTTAA+TGG | - | tig0020776:29712-29731 | Msa1385740:CDS | 50.0% |
| GAAGAACGACGAACCCTTGA+AGG | - | tig0020776:29788-29807 | Msa1385740:intron | 50.0% | |
| !!! | CCCTAGTTTTAGGGCATGCT+TGG | - | tig0020776:29947-29966 | Msa1385740:intron | 50.0% |
| CTTTCACACCCCGCCAAATT+GGG | - | tig0020776:30352-30371 | Msa1385740:intron | 50.0% | |
| TTTCACACCCCGCCAAATTG+GGG | - | tig0020776:30353-30372 | Msa1385740:intron | 50.0% | |
| !! | GGATCGACATTTTGGCAACG+TGG | - | tig0020776:31154-31173 | Msa1385740:five_prime_UTR | 50.0% |
| ACACACAATGGAGGAGGAGG+AGG | + | tig0020776:29661-29680 | None:intergenic | 55.0% | |
| GCTACACACAATGGAGGAGG+AGG | + | tig0020776:29664-29683 | None:intergenic | 55.0% | |
| !! | CCTGGTTTTCATTACGGGCG+AGG | + | tig0020776:29832-29851 | None:intergenic | 55.0% |
| CCTCGCCCGTAATGAAAACC+AGG | - | tig0020776:29829-29848 | Msa1385740:intron | 55.0% | |
| GGGCATGCTTGGATCATCGA+AGG | - | tig0020776:29958-29977 | Msa1385740:intron | 55.0% | |
| CCAATTTGGCGGGGTGTGAA+AGG | + | tig0020776:30354-30373 | None:intergenic | 55.0% | |
| CCTTTCACACCCCGCCAAAT+TGG | - | tig0020776:30351-30370 | Msa1385740:intron | 55.0% | |
| CACAATGGAGGAGGAGGAGG+AGG | + | tig0020776:29658-29677 | None:intergenic | 60.0% | |
| !! | GGTTGGAGTTGATGACGGCG+AGG | - | tig0020776:30752-30771 | Msa1385740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020776 | gene | 29118 | 31745 | 29118 | ID=Msa1385740;Name=Msa1385740 |
| tig0020776 | mRNA | 29118 | 31745 | 29118 | ID=Msa1385740-mRNA-1;Parent=Msa1385740;Name=Msa1385740-mRNA-1;_AED=0.23;_eAED=0.23;_QI=209|1|1|1|0.75|0.6|5|256|143 |
| tig0020776 | exon | 29118 | 29508 | 29118 | ID=Msa1385740-mRNA-1:exon:9832;Parent=Msa1385740-mRNA-1 |
| tig0020776 | exon | 29688 | 29756 | 29688 | ID=Msa1385740-mRNA-1:exon:9831;Parent=Msa1385740-mRNA-1 |
| tig0020776 | exon | 30090 | 30176 | 30090 | ID=Msa1385740-mRNA-1:exon:9830;Parent=Msa1385740-mRNA-1 |
| tig0020776 | exon | 31013 | 31270 | 31013 | ID=Msa1385740-mRNA-1:exon:9829;Parent=Msa1385740-mRNA-1 |
| tig0020776 | exon | 31654 | 31745 | 31654 | ID=Msa1385740-mRNA-1:exon:9828;Parent=Msa1385740-mRNA-1 |
| tig0020776 | five_prime_UTR | 31654 | 31745 | 31654 | ID=Msa1385740-mRNA-1:five_prime_utr;Parent=Msa1385740-mRNA-1 |
| tig0020776 | five_prime_UTR | 31154 | 31270 | 31154 | ID=Msa1385740-mRNA-1:five_prime_utr;Parent=Msa1385740-mRNA-1 |
| tig0020776 | CDS | 31013 | 31153 | 31013 | ID=Msa1385740-mRNA-1:cds;Parent=Msa1385740-mRNA-1 |
| tig0020776 | CDS | 30090 | 30176 | 30090 | ID=Msa1385740-mRNA-1:cds;Parent=Msa1385740-mRNA-1 |
| tig0020776 | CDS | 29688 | 29756 | 29688 | ID=Msa1385740-mRNA-1:cds;Parent=Msa1385740-mRNA-1 |
| tig0020776 | CDS | 29374 | 29508 | 29374 | ID=Msa1385740-mRNA-1:cds;Parent=Msa1385740-mRNA-1 |
| tig0020776 | three_prime_UTR | 29118 | 29373 | 29118 | ID=Msa1385740-mRNA-1:three_prime_utr;Parent=Msa1385740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
