AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0827280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827280 MtrunA17_Chr2g0329821 99.600 250 1 0 1 250 1 250 0.0 514
Msa0827280 MtrunA17_Chr8g0343441 80.081 246 48 1 6 250 10 255 1.12e-123 352
Msa0827280 MtrunA17_Chr2g0300241 72.177 248 58 5 6 250 13 252 1.13e-113 326
Msa0827280 MtrunA17_Chr4g0076771 67.857 252 76 1 1 247 1 252 1.37e-111 321
Msa0827280 MtrunA17_Chr1g0150821 68.775 253 70 3 6 250 11 262 2.02e-108 313
Msa0827280 MtrunA17_Chr4g0006381 61.600 250 85 5 1 250 3 241 1.49e-91 270
Msa0827280 MtrunA17_Chr7g0242511 58.607 244 91 4 1 244 3 236 2.30e-86 256
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0827280 AT3G42790.1 72.653 245 61 3 6 250 11 249 2.46e-118 338
Msa0827280 AT5G20510.1 69.200 250 71 2 6 250 11 259 1.37e-113 327
Msa0827280 AT1G14510.1 67.755 245 76 3 6 250 10 251 7.18e-106 306
Msa0827280 AT2G02470.1 68.340 259 69 6 1 250 1 255 6.79e-105 304
Msa0827280 AT2G02470.2 68.504 254 68 6 1 250 1 246 4.83e-103 299
Msa0827280 AT5G26210.1 70.732 246 70 2 6 250 10 254 1.98e-93 275
Msa0827280 AT5G20510.2 68.519 216 62 2 40 250 4 218 5.28e-92 270
Msa0827280 AT5G05610.2 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa0827280 AT5G05610.1 60.331 242 84 5 6 247 9 238 3.61e-88 261
Msa0827280 AT3G11200.1 61.570 242 84 5 6 247 11 243 9.78e-86 255
Msa0827280 AT5G20510.3 74.194 155 40 0 6 160 11 165 1.02e-75 228
Msa0827280 AT3G11200.2 61.538 208 71 5 40 247 32 230 4.83e-72 220
Msa0827280 AT2G02470.3 72.785 158 38 2 1 154 1 157 1.04e-66 207

Find 93 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCTTCCTCCTCATCTTT+TGG 0.240666 5_3:-68431345 None:intergenic
GGTTGTCTGCTCTGAGCTTC+AGG 0.243347 5_3:-68431306 None:intergenic
AAAACGATGTCGTTTGGATT+AGG 0.261991 5_3:-68428088 None:intergenic
TTCTACTTTGGAGCCAGATT+TGG 0.290182 5_3:+68429226 Msa0827280:CDS
GATTCAATGGGTTATGGTTA+AGG 0.299628 5_3:-68428144 None:intergenic
ACGGATTGCTTAATGAGAAT+TGG 0.301755 5_3:+68429059 Msa0827280:CDS
CATTGTTCAATTCGATTCAA+TGG 0.307254 5_3:-68428157 None:intergenic
AAGGAGAATTTGTGCTTATA+CGG 0.310260 5_3:+68429040 Msa0827280:CDS
CAAAATGTCATTCCTTCATT+TGG 0.312555 5_3:-68431821 None:intergenic
AAACGATGTCGTTTGGATTA+GGG 0.318784 5_3:-68428087 None:intergenic
AATCACATACAAAACTTTGT+TGG 0.336175 5_3:+68431579 Msa0827280:three_prime_UTR
AACAGGGCGAAGCCACTTGC+GGG 0.339120 5_3:+68431388 Msa0827280:CDS
CAATTCGATTCAATGGGTTA+TGG 0.346327 5_3:-68428150 None:intergenic
TTTGGCTGTAATGCCGCTTT+TGG 0.349429 5_3:-68431327 None:intergenic
GTAACGGGGCTGATGAGTTC+TGG 0.350703 5_3:+68431424 Msa0827280:CDS
TGCTGGGTATCAACTTTGCC+AGG 0.351612 5_3:+68429131 Msa0827280:CDS
CTTTGATGATTCCAGTTCTT+CGG 0.353581 5_3:-68428227 None:intergenic
AAGAAATTATACCGACGGTT+AGG 0.356361 5_3:-68428251 None:intergenic
ATTATTTACCGCTTTAGAAC+TGG 0.360765 5_3:-68430052 None:intergenic
GGGCTTGTGGTGATAGTAAC+GGG 0.362851 5_3:+68431409 Msa0827280:CDS
ATTCAATGGGTTATGGTTAA+GGG 0.365057 5_3:-68428143 None:intergenic
CATTTCTTGCACTGCGAGAT+AGG 0.367114 5_3:+68428055 Msa0827280:five_prime_UTR
AGAGATTCCTGAGCCTGTGC+TGG 0.371017 5_3:+68429114 Msa0827280:CDS
GATTTCAAGAGCCGAAGAAC+TGG 0.371977 5_3:+68428216 Msa0827280:CDS
ACAGTATTTGAAGTTGTAAC+TGG 0.378246 5_3:+68429964 Msa0827280:CDS
AGATTGAAAACGATGTCGTT+TGG 0.383693 5_3:-68428094 None:intergenic
CTTTCCCTTGCATTCTACTT+TGG 0.386606 5_3:+68429214 Msa0827280:CDS
CGGATTGCTTAATGAGAATT+GGG 0.394937 5_3:+68429060 Msa0827280:CDS
TTTCTCTTGCATTCCATCCC+TGG 0.397443 5_3:-68429149 None:intergenic
AGAGCAGGATGATGATGAAC+AGG 0.397479 5_3:+68431371 Msa0827280:CDS
TTCGAGGTAGTGCTTGTTTG+TGG 0.407783 5_3:-68427928 None:intergenic
AGCTTTATCAAATCCAAATC+TGG 0.410286 5_3:-68429239 None:intergenic
TTTATATTTACGCAAGGATT+GGG 0.413551 5_3:-68427903 None:intergenic
AGCACAGGCTCAGGAATCTC+TGG 0.425752 5_3:-68429112 None:intergenic
AAAAGATGAGGAGGAAGAAC+TGG 0.426868 5_3:+68431347 Msa0827280:CDS
TTTATGAAGTTTGAGACATA+GGG 0.431717 5_3:+68431658 Msa0827280:three_prime_UTR
TCTTGTTACTGCTGCATGAT+GGG 0.433135 5_3:-68431536 None:intergenic
TCTGGAGGAACTTCTTCAAC+AGG 0.445499 5_3:-68429094 None:intergenic
CAGTGGCCACCTTAGTGTTA+TGG 0.446538 5_3:+68431773 Msa0827280:three_prime_UTR
AGAAAGAAAAGCATATTAAC+CGG 0.449243 5_3:-68431615 None:intergenic
ATTGTTCAATTCGATTCAAT+GGG 0.450426 5_3:-68428156 None:intergenic
AGAAATTATACCGACGGTTA+GGG 0.452362 5_3:-68428250 None:intergenic
GGAGGAAGAACTGGAAGAGC+AGG 0.470600 5_3:+68431356 Msa0827280:CDS
ACGACATTTGCACCAAATGA+AGG 0.471559 5_3:+68431809 Msa0827280:three_prime_UTR
CCAGAACTAGAGAAAAGACT+TGG 0.475974 5_3:-68431749 None:intergenic
CATTAATTTCCATAACACTA+AGG 0.480224 5_3:-68431782 None:intergenic
CTCTTGTTACTGCTGCATGA+TGG 0.480424 5_3:-68431537 None:intergenic
TGTTGGAGTCTTCACTGATC+CGG 0.484963 5_3:+68431596 Msa0827280:three_prime_UTR
TTCTACAGACAATGTGATCC+TGG 0.488698 5_3:+68428437 Msa0827280:CDS
TTGATACCCAGCACAGGCTC+AGG 0.497706 5_3:-68429121 None:intergenic
ATCACTGTGAACAGCAACTA+AGG 0.498800 5_3:-68429182 None:intergenic
TTGCTGTTCACAGTGATACA+TGG 0.507689 5_3:+68429188 Msa0827280:CDS
GTAGTTGAAACATTGTTGAC+TGG 0.509936 5_3:+68431719 Msa0827280:three_prime_UTR
ATCTGCGAGAAGTGGTTCCA+TGG 0.517485 5_3:+68431459 Msa0827280:CDS
GGTATCAACTTTGCCAGGGA+TGG 0.520071 5_3:+68429136 Msa0827280:CDS
GAGATTCCTGAGCCTGTGCT+GGG 0.523852 5_3:+68429115 Msa0827280:CDS
TTTCTTTCTAGACGCATTGG+TGG 0.530027 5_3:+68431629 Msa0827280:three_prime_UTR
ATGGAATGCAAGAGAAAGAC+TGG 0.533268 5_3:+68429155 Msa0827280:CDS
GAAGCCACTTGCGGGGCTTG+TGG 0.543776 5_3:+68431396 Msa0827280:CDS
TTGATATGCTCAGCACGAGC+AGG 0.552258 5_3:-68431501 None:intergenic
GAATCGAATTGAACAATGGA+AGG 0.552287 5_3:+68428162 Msa0827280:exon
TTGGATTTGATAAAGCTGAC+AGG 0.552742 5_3:+68429245 Msa0827280:CDS
GGGGCTTGTGGTGATAGTAA+CGG 0.558893 5_3:+68431408 Msa0827280:CDS
GTTACAACTTCAAATACTGT+TGG 0.565683 5_3:-68429961 None:intergenic
GCTGCGACATCTGCGAGAAG+TGG 0.566172 5_3:+68431451 Msa0827280:CDS
GAACAGGGCGAAGCCACTTG+CGG 0.571946 5_3:+68431387 Msa0827280:CDS
TGGCTCCAAAGTAGAATGCA+AGG 0.572860 5_3:-68429219 None:intergenic
TAGTTGAAACATTGTTGACT+GGG 0.579913 5_3:+68431720 Msa0827280:three_prime_UTR
ATCTAAGTCCAGTTCTAAAG+CGG 0.587642 5_3:+68430044 Msa0827280:CDS
CATAACACTAAGGTGGCCAC+TGG 0.593168 5_3:-68431772 None:intergenic
AGTCAACAATGTTTCAACTA+CGG 0.597010 5_3:-68431717 None:intergenic
ATCACCACAAGCCCCGCAAG+TGG 0.598002 5_3:-68431400 None:intergenic
TCAGAGCAGACAACCAAAAG+CGG 0.606960 5_3:+68431314 Msa0827280:CDS
ATCAGATTATGATGACGTGA+TGG 0.614427 5_3:-68427852 None:intergenic
CATTGAATCGAATTGAACAA+TGG 0.620243 5_3:+68428158 Msa0827280:exon
GCTGGGTATCAACTTTGCCA+GGG 0.620748 5_3:+68429132 Msa0827280:CDS
TTATGAAGTTTGAGACATAG+GGG 0.621103 5_3:+68431659 Msa0827280:three_prime_UTR
TCATAATCTGATTATTACAG+TGG 0.623153 5_3:+68427863 Msa0827280:five_prime_UTR
TAATTTCCATAACACTAAGG+TGG 0.623750 5_3:-68431779 None:intergenic
GCAAAGTTGATACCCAGCAC+AGG 0.629760 5_3:-68429127 None:intergenic
ATCATCAAAGCCCTAACCGT+CGG 0.634254 5_3:+68428240 Msa0827280:CDS
GATTATGATGACGTGATGGA+CGG 0.635988 5_3:-68427848 None:intergenic
GGCATTACAGCCAAAAGATG+AGG 0.636479 5_3:+68431335 Msa0827280:CDS
GGCTCCAAAGTAGAATGCAA+GGG 0.639786 5_3:-68429218 None:intergenic
ACAGGGCGAAGCCACTTGCG+GGG 0.643480 5_3:+68431389 Msa0827280:CDS
CAGAACTAGAGAAAAGACTT+GGG 0.649772 5_3:-68431748 None:intergenic
ACAGGCTCAGGAATCTCTGG+AGG 0.651339 5_3:-68429109 None:intergenic
ATTACAGCCAAAAGATGAGG+AGG 0.661732 5_3:+68431338 Msa0827280:CDS
GAGCAGGATGATGATGAACA+GGG 0.682274 5_3:+68431372 Msa0827280:CDS
GGCTTGTGGTGATAGTAACG+GGG 0.707309 5_3:+68431410 Msa0827280:CDS
AACAAAACAAGACACAACGC+AGG 0.709831 5_3:-68427957 None:intergenic
TCTTCAGTCTCAAACAACAG+TGG 0.724521 5_3:+68430015 Msa0827280:CDS
TACAGTGGAAGCGAACACAG+AGG 0.787896 5_3:+68427878 Msa0827280:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATACAACTATTTTAA+GGG - chr5_3:68428981-68429000 None:intergenic 10.0%
!!! AAATAAATACAACTATTTTA+AGG - chr5_3:68428982-68429001 None:intergenic 10.0%
!! ATAAAGAAAATGATATTATT+AGG - chr5_3:68430898-68430917 None:intergenic 10.0%
!!! TTCAATCTTTTTCAAAATTT+TGG + chr5_3:68428275-68428294 Msa0827280:intron 15.0%
!! TAAATAAAATTCAAAAACCT+TGG - chr5_3:68428363-68428382 None:intergenic 15.0%
!!! TTTTATTTTCCATCAATTTT+AGG + chr5_3:68428530-68428549 Msa0827280:intron 15.0%
!!! TTTATTTTCCATCAATTTTA+GGG + chr5_3:68428531-68428550 Msa0827280:intron 15.0%
!!! AAATGCCTTAATTTTAAAAA+GGG - chr5_3:68430379-68430398 None:intergenic 15.0%
!!! AAAATGCCTTAATTTTAAAA+AGG - chr5_3:68430380-68430399 None:intergenic 15.0%
!! ATTTGTGAATAAAAAAGTAA+AGG + chr5_3:68430431-68430450 Msa0827280:intron 15.0%
!! AAATAAATAAGTTAACAATG+TGG + chr5_3:68430558-68430577 Msa0827280:intron 15.0%
!!! TTTATTGTCATTTTGAATTT+CGG + chr5_3:68430913-68430932 Msa0827280:intron 15.0%
!! GTATATAAACATAACTTATT+TGG - chr5_3:68431166-68431185 None:intergenic 15.0%
!!! ATCATCAAAAATTTGTTCAA+CGG - chr5_3:68428199-68428218 None:intergenic 20.0%
!!! TTTTTCAAAATTTTGGCAAA+AGG + chr5_3:68428282-68428301 Msa0827280:intron 20.0%
!!! TTTTCAAAATTTTGGCAAAA+GGG + chr5_3:68428283-68428302 Msa0827280:intron 20.0%
!!! TTTCATTAAATTTTCTACCA+AGG + chr5_3:68428343-68428362 Msa0827280:intron 20.0%
!!! ATAAAAGAGCATTCAAATAT+CGG - chr5_3:68428516-68428535 None:intergenic 20.0%
!! TGATAATTCATTGTTCTTTA+TGG + chr5_3:68428615-68428634 Msa0827280:intron 20.0%
!! AGATAAAAATAGTTATGCTT+CGG - chr5_3:68429281-68429300 None:intergenic 20.0%
!! AGAAAAATCTTATTCAACAA+GGG - chr5_3:68429418-68429437 None:intergenic 20.0%
!! AAGAAAAATCTTATTCAACA+AGG - chr5_3:68429419-68429438 None:intergenic 20.0%
!!! CGCTATTATTATTTTAAACA+GGG - chr5_3:68430191-68430210 None:intergenic 20.0%
!!! TCGCTATTATTATTTTAAAC+AGG - chr5_3:68430192-68430211 None:intergenic 20.0%
!! TCTATTGTTTATCCTATAAT+GGG + chr5_3:68430271-68430290 Msa0827280:intron 20.0%
!!! AGAATCCCTTTTTAAAATTA+AGG + chr5_3:68430371-68430390 Msa0827280:intron 20.0%
!!! AAATTAAGGCATTTTTCAAA+TGG + chr5_3:68430385-68430404 Msa0827280:intron 20.0%
!!! TTTTTTTGCAATAAACAACA+AGG - chr5_3:68430536-68430555 None:intergenic 20.0%
!!! TTATTGTCATTTTGAATTTC+GGG + chr5_3:68430914-68430933 Msa0827280:intron 20.0%
!! AAGTATACATATCATTAACA+GGG - chr5_3:68431000-68431019 None:intergenic 20.0%
!! TATCTAATTGATATCTTGTT+TGG + chr5_3:68431218-68431237 Msa0827280:intron 20.0%
!!! ATCTAATTGATATCTTGTTT+GGG + chr5_3:68431219-68431238 Msa0827280:intron 20.0%
!! TTAACAATTAGATAAGAACA+CGG - chr5_3:68431268-68431287 None:intergenic 20.0%
! TCATAATCTGATTATTACAG+TGG + chr5_3:68427863-68427882 Msa0827280:five_prime_UTR 25.0%
! TTTATATTTACGCAAGGATT+GGG - chr5_3:68427906-68427925 None:intergenic 25.0%
!! TTTTATATTTACGCAAGGAT+TGG - chr5_3:68427907-68427926 None:intergenic 25.0%
! ATTGTTCAATTCGATTCAAT+GGG - chr5_3:68428159-68428178 None:intergenic 25.0%
! TATTCTTGCACTAAAATGTT+TGG + chr5_3:68428381-68428400 Msa0827280:intron 25.0%
! ACATTGAAATTAAACTAACC+AGG - chr5_3:68428458-68428477 None:intergenic 25.0%
! TAATTGAACCCTAAAATTGA+TGG - chr5_3:68428542-68428561 None:intergenic 25.0%
! ATTGACTGATAAATAAAAGG+CGG - chr5_3:68428683-68428702 None:intergenic 25.0%
!!! CTTTTATTTATCAGTCAATG+CGG + chr5_3:68428684-68428703 Msa0827280:intron 25.0%
!!! TAAGCTATTTCTAAGGAAAA+TGG - chr5_3:68428881-68428900 None:intergenic 25.0%
!!! AATAATTTGCTTATCCAAAC+AGG + chr5_3:68428955-68428974 Msa0827280:intron 25.0%
! GATAAAAATAGTTATGCTTC+GGG - chr5_3:68429280-68429299 None:intergenic 25.0%
! GCAAATAAAATTGCAAATCA+AGG - chr5_3:68429492-68429511 None:intergenic 25.0%
! TTGCTTATAAATCATTGTTG+AGG + chr5_3:68429508-68429527 Msa0827280:intron 25.0%
!!! ATACCATTTTTTCCTGAAAA+AGG + chr5_3:68429577-68429596 Msa0827280:intron 25.0%
!!! TACCATTTTTTCCTGAAAAA+GGG + chr5_3:68429578-68429597 Msa0827280:intron 25.0%
! TAAAGAAAAAACCACTTGAT+AGG - chr5_3:68429782-68429801 None:intergenic 25.0%
!! AATCATCTGTGTATTTGTTT+TGG + chr5_3:68429836-68429855 Msa0827280:intron 25.0%
! GTCTATTGTTTATCCTATAA+TGG + chr5_3:68430270-68430289 Msa0827280:intron 25.0%
!! AAAGGAACAACTAGTTTAAT+TGG + chr5_3:68430449-68430468 Msa0827280:intron 25.0%
!! ACTAAAGAATCGTTTCATTT+TGG - chr5_3:68430490-68430509 None:intergenic 25.0%
! TTGTCTCCTTCTTTATTAAT+CGG + chr5_3:68430616-68430635 Msa0827280:intron 25.0%
! GTGAAGTATGATGAATATAT+TGG + chr5_3:68430749-68430768 Msa0827280:intron 25.0%
! GAATTTGGACTGAATATTTA+TGG + chr5_3:68430813-68430832 Msa0827280:intron 25.0%
! CAAGTATACATATCATTAAC+AGG - chr5_3:68431001-68431020 None:intergenic 25.0%
! CTGTTAATGATATGTATACT+TGG + chr5_3:68430999-68431018 Msa0827280:intron 25.0%
! TAATGATATGTATACTTGGT+TGG + chr5_3:68431003-68431022 Msa0827280:intron 25.0%
! TATCTCTCATCATTATTAAG+CGG - chr5_3:68431111-68431130 None:intergenic 25.0%
! AAACATAACTTATTTGGAAG+TGG - chr5_3:68431160-68431179 None:intergenic 25.0%
! AATCACATACAAAACTTTGT+TGG + chr5_3:68431579-68431598 Msa0827280:three_prime_UTR 25.0%
!! AGAAAGAAAAGCATATTAAC+CGG - chr5_3:68431618-68431637 None:intergenic 25.0%
!!! TTTTATGAAGTTTGAGACAT+AGG + chr5_3:68431657-68431676 Msa0827280:three_prime_UTR 25.0%
!! TTTATGAAGTTTGAGACATA+GGG + chr5_3:68431658-68431677 Msa0827280:three_prime_UTR 25.0%
! CATTAATTTCCATAACACTA+AGG - chr5_3:68431785-68431804 None:intergenic 25.0%
! GTGGATTTTATATTTACGCA+AGG - chr5_3:68427912-68427931 None:intergenic 30.0%
!! ATTCAATGGGTTATGGTTAA+GGG - chr5_3:68428146-68428165 None:intergenic 30.0%
CATTGTTCAATTCGATTCAA+TGG - chr5_3:68428160-68428179 None:intergenic 30.0%
CATTGAATCGAATTGAACAA+TGG + chr5_3:68428158-68428177 Msa0827280:exon 30.0%
TGAACAAGAAATTATACCGA+CGG - chr5_3:68428259-68428278 None:intergenic 30.0%
CAAAATTTGTAGATCAAGCA+AGG - chr5_3:68428319-68428338 None:intergenic 30.0%
! CTTGCTTGATCTACAAATTT+TGG + chr5_3:68428317-68428336 Msa0827280:intron 30.0%
AGGGTTCAATTATTTGCAAT+TGG + chr5_3:68428550-68428569 Msa0827280:intron 30.0%
!! CGCATTGACTGATAAATAAA+AGG - chr5_3:68428686-68428705 None:intergenic 30.0%
! TGCGACAAATTTTGCATTAT+AGG - chr5_3:68428717-68428736 None:intergenic 30.0%
TTGTCGCATTTCTATGATTT+AGG + chr5_3:68428729-68428748 Msa0827280:intron 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG + chr5_3:68428790-68428809 Msa0827280:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG + chr5_3:68428791-68428810 Msa0827280:intron 30.0%
!! GCTTACATAAGCTATTTCTA+AGG - chr5_3:68428888-68428907 None:intergenic 30.0%
CTGTTGTATTCTTTCAGAAA+AGG + chr5_3:68429021-68429040 Msa0827280:intron 30.0%
AAGGAGAATTTGTGCTTATA+CGG + chr5_3:68429040-68429059 Msa0827280:CDS 30.0%
! AGCTTTATCAAATCCAAATC+TGG - chr5_3:68429242-68429261 None:intergenic 30.0%
ACTCGTGAAAAAGTTATATC+AGG + chr5_3:68429308-68429327 Msa0827280:intron 30.0%
ATATCAGGATGAGTATGTTA+AGG + chr5_3:68429323-68429342 Msa0827280:intron 30.0%
!!! ACCATTTTTTCCTGAAAAAG+GGG + chr5_3:68429579-68429598 Msa0827280:intron 30.0%
!!! TGTTTTAAGATAGTGCAAGA+AGG + chr5_3:68429713-68429732 Msa0827280:intron 30.0%
AATTGAAGATTCCTATCAAG+TGG + chr5_3:68429768-68429787 Msa0827280:intron 30.0%
GTTACAACTTCAAATACTGT+TGG - chr5_3:68429964-68429983 None:intergenic 30.0%
! ACAGTATTTGAAGTTGTAAC+TGG + chr5_3:68429964-68429983 Msa0827280:CDS 30.0%
!! ATTATTTACCGCTTTAGAAC+TGG - chr5_3:68430055-68430074 None:intergenic 30.0%
TTCAAGTGTAGACTGTATAT+AGG + chr5_3:68430347-68430366 Msa0827280:intron 30.0%
! TTAATTGGTTTCTTTGAGCA+AGG + chr5_3:68430464-68430483 Msa0827280:intron 30.0%
TAGACTCCGATTAATAAAGA+AGG - chr5_3:68430625-68430644 None:intergenic 30.0%
! AATCGGAGTCTAAAATACTT+TGG + chr5_3:68430633-68430652 Msa0827280:intron 30.0%
!!! TTTGGTGTTTCGTTACATTT+TGG + chr5_3:68430651-68430670 Msa0827280:intron 30.0%
!! TTGGTGTTTCGTTACATTTT+GGG + chr5_3:68430652-68430671 Msa0827280:intron 30.0%
TAAGAACTTTACCTTAAGCT+TGG + chr5_3:68430682-68430701 Msa0827280:intron 30.0%
! TGTACTTGTATGATGGAATT+TGG + chr5_3:68430798-68430817 Msa0827280:intron 30.0%
AAGGTATGCAGAAATAAAAG+AGG + chr5_3:68430860-68430879 Msa0827280:intron 30.0%
TATACATATCATTAACAGGG+TGG - chr5_3:68430997-68431016 None:intergenic 30.0%
TATGTATACTTGGTTGGAAA+TGG + chr5_3:68431009-68431028 Msa0827280:intron 30.0%
AGTTTCCACTAACTATGATA+TGG + chr5_3:68431083-68431102 Msa0827280:intron 30.0%
ACTTTCAATGCAAAATTGTG+TGG + chr5_3:68431184-68431203 Msa0827280:intron 30.0%
! TTATGAAGTTTGAGACATAG+GGG + chr5_3:68431659-68431678 Msa0827280:three_prime_UTR 30.0%
AGTCAACAATGTTTCAACTA+CGG - chr5_3:68431720-68431739 None:intergenic 30.0%
! TAGTTGAAACATTGTTGACT+GGG + chr5_3:68431720-68431739 Msa0827280:three_prime_UTR 30.0%
TAATTTCCATAACACTAAGG+TGG - chr5_3:68431782-68431801 None:intergenic 30.0%
CAAAATGTCATTCCTTCATT+TGG - chr5_3:68431824-68431843 None:intergenic 30.0%
! ATCAGATTATGATGACGTGA+TGG - chr5_3:68427855-68427874 None:intergenic 35.0%
! AAACGATGTCGTTTGGATTA+GGG - chr5_3:68428090-68428109 None:intergenic 35.0%
! AAAACGATGTCGTTTGGATT+AGG - chr5_3:68428091-68428110 None:intergenic 35.0%
AGATTGAAAACGATGTCGTT+TGG - chr5_3:68428097-68428116 None:intergenic 35.0%
!! GATTCAATGGGTTATGGTTA+AGG - chr5_3:68428147-68428166 None:intergenic 35.0%
!! CAATTCGATTCAATGGGTTA+TGG - chr5_3:68428153-68428172 None:intergenic 35.0%
GAATCGAATTGAACAATGGA+AGG + chr5_3:68428162-68428181 Msa0827280:exon 35.0%
! CTTTGATGATTCCAGTTCTT+CGG - chr5_3:68428230-68428249 None:intergenic 35.0%
AGAAATTATACCGACGGTTA+GGG - chr5_3:68428253-68428272 None:intergenic 35.0%
AAGAAATTATACCGACGGTT+AGG - chr5_3:68428254-68428273 None:intergenic 35.0%
!! CTTGTAGCTTTGAATTCTGA+TGG + chr5_3:68428643-68428662 Msa0827280:intron 35.0%
! TCTATGATTTAGGACCTGTT+TGG + chr5_3:68428739-68428758 Msa0827280:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr5_3:68428756-68428775 None:intergenic 35.0%
GCTTATTTGAGCTTATCTAC+TGG + chr5_3:68428766-68428785 Msa0827280:intron 35.0%
!! AACTATTTTAAGGGCCTGTT+TGG - chr5_3:68428972-68428991 None:intergenic 35.0%
! ACGGATTGCTTAATGAGAAT+TGG + chr5_3:68429059-68429078 Msa0827280:CDS 35.0%
CGGATTGCTTAATGAGAATT+GGG + chr5_3:68429060-68429079 Msa0827280:CDS 35.0%
TTGGATTTGATAAAGCTGAC+AGG + chr5_3:68429245-68429264 Msa0827280:CDS 35.0%
AGTATGTTAAGGCAGTAGTT+TGG + chr5_3:68429334-68429353 Msa0827280:intron 35.0%
TTGTTTAGTCATCGTTGTGT+TGG + chr5_3:68429380-68429399 Msa0827280:intron 35.0%
GCTAGAAAGCAGTTATAAAG+TGG - chr5_3:68429464-68429483 None:intergenic 35.0%
!!! TCCCCTTTTTCAGGAAAAAA+TGG - chr5_3:68429583-68429602 None:intergenic 35.0%
ATAGTGCAAGAAGGAAAAGT+TGG + chr5_3:68429722-68429741 Msa0827280:intron 35.0%
AATGGCAAATTAGGACAAGA+AGG - chr5_3:68429900-68429919 None:intergenic 35.0%
TGCATCACAAATGGCAAATT+AGG - chr5_3:68429909-68429928 None:intergenic 35.0%
! TAATTTGCCATTTGTGATGC+AGG + chr5_3:68429908-68429927 Msa0827280:intron 35.0%
!! ATCTAAGTCCAGTTCTAAAG+CGG + chr5_3:68430044-68430063 Msa0827280:CDS 35.0%
TGAATCGCAGTGTAAAACTT+AGG + chr5_3:68430130-68430149 Msa0827280:intron 35.0%
TTCAAGTGTAGACTGTTCAT+AGG + chr5_3:68430159-68430178 Msa0827280:intron 35.0%
CATGGACAAAAGACAATACA+TGG - chr5_3:68430233-68430252 None:intergenic 35.0%
! CATGTATTGTCTTTTGTCCA+TGG + chr5_3:68430231-68430250 Msa0827280:intron 35.0%
CAATGCATGAAAGATAACCA+TGG - chr5_3:68430251-68430270 None:intergenic 35.0%
GTCTACACTTGAAAAACCAT+AGG - chr5_3:68430340-68430359 None:intergenic 35.0%
TGCAATAAACAACAAGGTCT+TGG - chr5_3:68430530-68430549 None:intergenic 35.0%
! TGGTGTTTCGTTACATTTTG+GGG + chr5_3:68430653-68430672 Msa0827280:intron 35.0%
TTGCAGAATAACCAAGCTTA+AGG - chr5_3:68430696-68430715 None:intergenic 35.0%
! CAAGCTTTGTACTTGTATGA+TGG + chr5_3:68430791-68430810 Msa0827280:intron 35.0%
! CACTTGAATTGCTACTTGTA+AGG + chr5_3:68430841-68430860 Msa0827280:intron 35.0%
!! TGAATTTCGGGTTTAGAATG+TGG + chr5_3:68430926-68430945 Msa0827280:intron 35.0%
AGTTAGTGGAAACTTGTGAA+GGG - chr5_3:68431077-68431096 None:intergenic 35.0%
TAGTTAGTGGAAACTTGTGA+AGG - chr5_3:68431078-68431097 None:intergenic 35.0%
TCAATGCAAAATTGTGTGGA+AGG + chr5_3:68431188-68431207 Msa0827280:intron 35.0%
! TGATCTTCACACATTTTCCA+TGG - chr5_3:68431479-68431498 None:intergenic 35.0%
GTAGTTGAAACATTGTTGAC+TGG + chr5_3:68431719-68431738 Msa0827280:three_prime_UTR 35.0%
CAGAACTAGAGAAAAGACTT+GGG - chr5_3:68431751-68431770 None:intergenic 35.0%
! GATTATGATGACGTGATGGA+CGG - chr5_3:68427851-68427870 None:intergenic 40.0%
AACAAAACAAGACACAACGC+AGG - chr5_3:68427960-68427979 None:intergenic 40.0%
TTCTACAGACAATGTGATCC+TGG + chr5_3:68428437-68428456 Msa0827280:CDS 40.0%
!! GTAGCTTTGAATTCTGATGG+AGG + chr5_3:68428646-68428665 Msa0827280:intron 40.0%
! GATTTAGGACCTGTTTGGAT+TGG + chr5_3:68428744-68428763 Msa0827280:intron 40.0%
ATGGAATGCAAGAGAAAGAC+TGG + chr5_3:68429155-68429174 Msa0827280:CDS 40.0%
ATCACTGTGAACAGCAACTA+AGG - chr5_3:68429185-68429204 None:intergenic 40.0%
! TTGCTGTTCACAGTGATACA+TGG + chr5_3:68429188-68429207 Msa0827280:CDS 40.0%
CTTTCCCTTGCATTCTACTT+TGG + chr5_3:68429214-68429233 Msa0827280:CDS 40.0%
!! TTCTACTTTGGAGCCAGATT+TGG + chr5_3:68429226-68429245 Msa0827280:CDS 40.0%
TGATGTGACTAAGAGGTCAT+AGG - chr5_3:68429648-68429667 None:intergenic 40.0%
! AGCCACAATTGATGCTCTTT+TGG + chr5_3:68429804-68429823 Msa0827280:intron 40.0%
!! GACCAAAAGAGCATCAATTG+TGG - chr5_3:68429809-68429828 None:intergenic 40.0%
TCTTCAGTCTCAAACAACAG+TGG + chr5_3:68430015-68430034 Msa0827280:CDS 40.0%
CAATACATGGAGAGTTTGTC+AGG - chr5_3:68430220-68430239 None:intergenic 40.0%
CACAGACTAAACAATCTGCA+TGG - chr5_3:68430303-68430322 None:intergenic 40.0%
TGTTCTCATCTATCTGCCTA+TGG + chr5_3:68430321-68430340 Msa0827280:intron 40.0%
AAACAACAAGGTCTTGGATG+AGG - chr5_3:68430524-68430543 None:intergenic 40.0%
! GCACAAGTTTTCAACATGAG+AGG + chr5_3:68431132-68431151 Msa0827280:intron 40.0%
ATTACAGCCAAAAGATGAGG+AGG + chr5_3:68431338-68431357 Msa0827280:CDS 40.0%
! AGTTCTTCCTCCTCATCTTT+TGG - chr5_3:68431348-68431367 None:intergenic 40.0%
AAAAGATGAGGAGGAAGAAC+TGG + chr5_3:68431347-68431366 Msa0827280:CDS 40.0%
TCTTGTTACTGCTGCATGAT+GGG - chr5_3:68431539-68431558 None:intergenic 40.0%
! GCTTTTCTTTCTAGACGCAT+TGG + chr5_3:68431626-68431645 Msa0827280:three_prime_UTR 40.0%
TTTCTTTCTAGACGCATTGG+TGG + chr5_3:68431629-68431648 Msa0827280:three_prime_UTR 40.0%
CCAGAACTAGAGAAAAGACT+TGG - chr5_3:68431752-68431771 None:intergenic 40.0%
!! CCAAGTCTTTTCTCTAGTTC+TGG + chr5_3:68431749-68431768 Msa0827280:three_prime_UTR 40.0%
ACGACATTTGCACCAAATGA+AGG + chr5_3:68431809-68431828 Msa0827280:three_prime_UTR 40.0%
TTCGAGGTAGTGCTTGTTTG+TGG - chr5_3:68427931-68427950 None:intergenic 45.0%
! ACAACGCAGGTTTTTCTTCG+AGG - chr5_3:68427947-68427966 None:intergenic 45.0%
CATTTCTTGCACTGCGAGAT+AGG + chr5_3:68428055-68428074 Msa0827280:five_prime_UTR 45.0%
GATTTCAAGAGCCGAAGAAC+TGG + chr5_3:68428216-68428235 Msa0827280:CDS 45.0%
ATCATCAAAGCCCTAACCGT+CGG + chr5_3:68428240-68428259 Msa0827280:CDS 45.0%
TCTGGAGGAACTTCTTCAAC+AGG - chr5_3:68429097-68429116 None:intergenic 45.0%
TTTCTCTTGCATTCCATCCC+TGG - chr5_3:68429152-68429171 None:intergenic 45.0%
GGCTCCAAAGTAGAATGCAA+GGG - chr5_3:68429221-68429240 None:intergenic 45.0%
TGGCTCCAAAGTAGAATGCA+AGG - chr5_3:68429222-68429241 None:intergenic 45.0%
GTTGAGGCAGTATTCCAACA+CGG + chr5_3:68429524-68429543 Msa0827280:intron 45.0%
! AAGTAAGGCTCCCCTTTTTC+AGG - chr5_3:68429592-68429611 None:intergenic 45.0%
CCTCTTGCAGATGCAAAGTA+AGG - chr5_3:68429607-68429626 None:intergenic 45.0%
CCTTACTTTGCATCTGCAAG+AGG + chr5_3:68429604-68429623 Msa0827280:intron 45.0%
CCATGTGTGATGTGACTAAG+AGG - chr5_3:68429655-68429674 None:intergenic 45.0%
CCTCTTAGTCACATCACACA+TGG + chr5_3:68429652-68429671 Msa0827280:intron 45.0%
CATGGCAGCATTTCTATAGC+AGG + chr5_3:68429670-68429689 Msa0827280:intron 45.0%
GACGTTTCCTGCATCACAAA+TGG - chr5_3:68429918-68429937 None:intergenic 45.0%
!! GCATGGAGAGTACCCATTAT+AGG - chr5_3:68430286-68430305 None:intergenic 45.0%
GAAGGAGACAAGCTGTAAAC+TGG - chr5_3:68430607-68430626 None:intergenic 45.0%
TGGAAACTTGTGAAGGGAGA+TGG - chr5_3:68431071-68431090 None:intergenic 45.0%
!! CGGTGCCATATCATAGTTAG+TGG - chr5_3:68431091-68431110 None:intergenic 45.0%
TCAGAGCAGACAACCAAAAG+CGG + chr5_3:68431314-68431333 Msa0827280:CDS 45.0%
!!! TTTGGCTGTAATGCCGCTTT+TGG - chr5_3:68431330-68431349 None:intergenic 45.0%
GGCATTACAGCCAAAAGATG+AGG + chr5_3:68431335-68431354 Msa0827280:CDS 45.0%
! AGAGCAGGATGATGATGAAC+AGG + chr5_3:68431371-68431390 Msa0827280:CDS 45.0%
! GAGCAGGATGATGATGAACA+GGG + chr5_3:68431372-68431391 Msa0827280:CDS 45.0%
CTCTTGTTACTGCTGCATGA+TGG - chr5_3:68431540-68431559 None:intergenic 45.0%
TGTTGGAGTCTTCACTGATC+CGG + chr5_3:68431596-68431615 Msa0827280:three_prime_UTR 45.0%
!!! TTTTCTCTAGTTCTGGCCAG+TGG + chr5_3:68431756-68431775 Msa0827280:three_prime_UTR 45.0%
TACAGTGGAAGCGAACACAG+AGG + chr5_3:68427878-68427897 Msa0827280:five_prime_UTR 50.0%
!! GCAAAGTTGATACCCAGCAC+AGG - chr5_3:68429130-68429149 None:intergenic 50.0%
TGCTGGGTATCAACTTTGCC+AGG + chr5_3:68429131-68429150 Msa0827280:CDS 50.0%
GCTGGGTATCAACTTTGCCA+GGG + chr5_3:68429132-68429151 Msa0827280:CDS 50.0%
GGTATCAACTTTGCCAGGGA+TGG + chr5_3:68429136-68429155 Msa0827280:CDS 50.0%
GCAGTATTCCAACACGGAGA+CGG + chr5_3:68429530-68429549 Msa0827280:intron 50.0%
TTCAACATCCGTCTCCGTGT+TGG - chr5_3:68429541-68429560 None:intergenic 50.0%
GGGGCTTGTGGTGATAGTAA+CGG + chr5_3:68431408-68431427 Msa0827280:CDS 50.0%
GGGCTTGTGGTGATAGTAAC+GGG + chr5_3:68431409-68431428 Msa0827280:CDS 50.0%
GGCTTGTGGTGATAGTAACG+GGG + chr5_3:68431410-68431429 Msa0827280:CDS 50.0%
ATCTGCGAGAAGTGGTTCCA+TGG + chr5_3:68431459-68431478 Msa0827280:CDS 50.0%
TTGATATGCTCAGCACGAGC+AGG - chr5_3:68431504-68431523 None:intergenic 50.0%
CATAACACTAAGGTGGCCAC+TGG - chr5_3:68431775-68431794 None:intergenic 50.0%
CAGTGGCCACCTTAGTGTTA+TGG + chr5_3:68431773-68431792 Msa0827280:three_prime_UTR 50.0%
ACAGGCTCAGGAATCTCTGG+AGG - chr5_3:68429112-68429131 None:intergenic 55.0%
AGCACAGGCTCAGGAATCTC+TGG - chr5_3:68429115-68429134 None:intergenic 55.0%
AGAGATTCCTGAGCCTGTGC+TGG + chr5_3:68429114-68429133 Msa0827280:CDS 55.0%
GAGATTCCTGAGCCTGTGCT+GGG + chr5_3:68429115-68429134 Msa0827280:CDS 55.0%
TTGATACCCAGCACAGGCTC+AGG - chr5_3:68429124-68429143 None:intergenic 55.0%
GAGGTCATAGGCTCAAGTCG+TGG - chr5_3:68429636-68429655 None:intergenic 55.0%
! GGTTGTCTGCTCTGAGCTTC+AGG - chr5_3:68431309-68431328 None:intergenic 55.0%
GGAGGAAGAACTGGAAGAGC+AGG + chr5_3:68431356-68431375 Msa0827280:CDS 55.0%
! GTAACGGGGCTGATGAGTTC+TGG + chr5_3:68431424-68431443 Msa0827280:CDS 55.0%
GAACAGGGCGAAGCCACTTG+CGG + chr5_3:68431387-68431406 Msa0827280:CDS 60.0%
AACAGGGCGAAGCCACTTGC+GGG + chr5_3:68431388-68431407 Msa0827280:CDS 60.0%
ATCACCACAAGCCCCGCAAG+TGG - chr5_3:68431403-68431422 None:intergenic 60.0%
GCTGCGACATCTGCGAGAAG+TGG + chr5_3:68431451-68431470 Msa0827280:CDS 60.0%
ACAGGGCGAAGCCACTTGCG+GGG + chr5_3:68431389-68431408 Msa0827280:CDS 65.0%
GAAGCCACTTGCGGGGCTTG+TGG + chr5_3:68431396-68431415 Msa0827280:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 68427828 68431846 68427828 ID=Msa0827280;Name=Msa0827280
chr5_3 mRNA 68427828 68431846 68427828 ID=Msa0827280-mRNA-1;Parent=Msa0827280;Name=Msa0827280-mRNA-1;_AED=0.14;_eAED=0.14;_QI=349|1|1|1|1|1|5|277|250
chr5_3 exon 68427828 68428261 68427828 ID=Msa0827280-mRNA-1:exon:21466;Parent=Msa0827280-mRNA-1
chr5_3 exon 68428426 68428458 68428426 ID=Msa0827280-mRNA-1:exon:21467;Parent=Msa0827280-mRNA-1
chr5_3 exon 68429038 68429266 68429038 ID=Msa0827280-mRNA-1:exon:21468;Parent=Msa0827280-mRNA-1
chr5_3 exon 68429930 68430065 68429930 ID=Msa0827280-mRNA-1:exon:21469;Parent=Msa0827280-mRNA-1
chr5_3 exon 68431300 68431846 68431300 ID=Msa0827280-mRNA-1:exon:21470;Parent=Msa0827280-mRNA-1
chr5_3 five_prime_UTR 68427828 68428176 68427828 ID=Msa0827280-mRNA-1:five_prime_utr;Parent=Msa0827280-mRNA-1
chr5_3 CDS 68428177 68428261 68428177 ID=Msa0827280-mRNA-1:cds;Parent=Msa0827280-mRNA-1
chr5_3 CDS 68428426 68428458 68428426 ID=Msa0827280-mRNA-1:cds;Parent=Msa0827280-mRNA-1
chr5_3 CDS 68429038 68429266 68429038 ID=Msa0827280-mRNA-1:cds;Parent=Msa0827280-mRNA-1
chr5_3 CDS 68429930 68430065 68429930 ID=Msa0827280-mRNA-1:cds;Parent=Msa0827280-mRNA-1
chr5_3 CDS 68431300 68431569 68431300 ID=Msa0827280-mRNA-1:cds;Parent=Msa0827280-mRNA-1
chr5_3 three_prime_UTR 68431570 68431846 68431570 ID=Msa0827280-mRNA-1:three_prime_utr;Parent=Msa0827280-mRNA-1
Gene Sequence

>Msa0827280

ATGGAAGGTCGAAGTCGCACCGTTGAACAAATTTTTGATGATTTCAAGAGCCGAAGAACTGGAATCATCAAAGCCCTAACCGTCGATGTTGAAGATTTCTACAGACAATGTGATCCTGAAAAGGAGAATTTGTGCTTATACGGATTGCTTAATGAGAATTGGGAAGTGAATTTACCTGTTGAAGAAGTTCCTCCAGAGATTCCTGAGCCTGTGCTGGGTATCAACTTTGCCAGGGATGGAATGCAAGAGAAAGACTGGTTAGCCTTAGTTGCTGTTCACAGTGATACATGGTTACTTTCCCTTGCATTCTACTTTGGAGCCAGATTTGGATTTGATAAAGCTGACAGGAAACGTCTATTCAATTTGATCAATGAACTGCCAACAGTATTTGAAGTTGTAACTGGTGCTGCAAAGAAACAAGTCAAAGAGAAGTCTTCAGTCTCAAACAACAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGCGCGAGCTCCTGAAGCTCAGAGCAGACAACCAAAAGCGGCATTACAGCCAAAAGATGAGGAGGAAGAACTGGAAGAGCAGGATGATGATGAACAGGGCGAAGCCACTTGCGGGGCTTGTGGTGATAGTAACGGGGCTGATGAGTTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACTCCTGCTCGTGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAGTAACAAGAGAGCTCGCTAG

Protein sequence

>Msa0827280

MEGRSRTVEQIFDDFKSRRTGIIKALTVDVEDFYRQCDPEKENLCLYGLLNENWEVNLPVEEVPPEIPEPVLGINFARDGMQEKDWLALVAVHSDTWLLSLAFYFGARFGFDKADRKRLFNLINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALQPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR*