Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029310 | Msa1227740 | 0.805159 | 1.527395e-49 | -8.615850e-47 |
| Msa0677410 | Msa1227740 | 0.805175 | 1.515183e-49 | -8.615850e-47 |
| Msa0696450 | Msa1227740 | 0.805968 | 1.033189e-49 | -8.615850e-47 |
| Msa0197660 | Msa1227740 | 0.817558 | 3.098050e-52 | -8.615850e-47 |
| Msa0229790 | Msa1227740 | 0.887846 | 9.968849e-73 | -8.615850e-47 |
| Msa1227740 | Msa1384870 | 0.813400 | 2.609635e-51 | -8.615850e-47 |
| Msa1227740 | Msa1436000 | 0.801382 | 9.244712e-49 | -8.615850e-47 |
| Msa0428050 | Msa1227740 | 0.802600 | 5.196045e-49 | -8.615850e-47 |
| Msa0438720 | Msa1227740 | 0.872770 | 2.463159e-67 | -8.615850e-47 |
| Msa1101580 | Msa1227740 | 0.902064 | 1.420273e-78 | -8.615850e-47 |
| Msa0239800 | Msa1227740 | 0.811068 | 8.420895e-51 | -8.615850e-47 |
| Msa0317510 | Msa1227740 | 0.813377 | 2.639889e-51 | -8.615850e-47 |
| Msa1168160 | Msa1227740 | 0.800717 | 1.263993e-48 | -8.615850e-47 |
| Msa0545120 | Msa1227740 | 0.803884 | 2.816729e-49 | -8.615850e-47 |
| Msa0871270 | Msa1227740 | 0.802250 | 6.133156e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGAGTGTGCTGATCTT+TGG | 0.343305 | 8_2:-3131643 | Msa1227740:CDS |
| CTGTCATTGAAGGGAAGGTT+TGG | 0.377281 | 8_2:-3131207 | Msa1227740:intron |
| AAGCATGCTGATGGGGCTGC+TGG | 0.411338 | 8_2:-3131176 | Msa1227740:CDS |
| CAGCTGGAAGATCTCCTCTA+TGG | 0.416917 | 8_2:-3130907 | Msa1227740:CDS |
| TATGTCATGCTGTCCATTGT+AGG | 0.422325 | 8_2:-3131689 | None:intergenic |
| GCTGATGGGGCTGCTGGAAG+TGG | 0.440363 | 8_2:-3131170 | Msa1227740:CDS |
| GAGGCGGTGAAGCATGCTGA+TGG | 0.457396 | 8_2:-3131185 | Msa1227740:CDS |
| ATTGCAGCACTTGCAATCCT+AGG | 0.474675 | 8_2:+3131620 | None:intergenic |
| TCTGCTATCACAGGACCAAT+TGG | 0.480119 | 8_2:-3131665 | Msa1227740:CDS |
| AATTTGATATCCAGACAACT+TGG | 0.487685 | 8_2:-3130934 | Msa1227740:intron |
| CAGACAACTTGGACTGCAGC+TGG | 0.489066 | 8_2:-3130923 | Msa1227740:CDS |
| AGGCGGTGAAGCATGCTGAT+GGG | 0.489921 | 8_2:-3131184 | Msa1227740:CDS |
| TCAGCACACTCCTTACCAAT+TGG | 0.492187 | 8_2:+3131650 | None:intergenic |
| GGCGGTGAAGCATGCTGATG+GGG | 0.508593 | 8_2:-3131183 | Msa1227740:CDS |
| TCATTGAAGGGAAGGTTTGG+AGG | 0.531755 | 8_2:-3131204 | Msa1227740:intron |
| AGTGTGCTGATCTTTGGCCT+AGG | 0.535711 | 8_2:-3131637 | Msa1227740:CDS |
| GATTGGGTAAAAGTTGAAGA+AGG | 0.561791 | 8_2:-3129929 | Msa1227740:CDS |
| GAATTGCAAACCTTCCATAG+AGG | 0.570742 | 8_2:+3130893 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+AGG | 0.586121 | 8_2:-3131674 | Msa1227740:CDS |
| AGTGGCAAGATATACTATCA+AGG | 0.587989 | 8_2:-3131152 | Msa1227740:intron |
| TTGAAGGGAAGGTTTGGAGG+CGG | 0.610256 | 8_2:-3131201 | Msa1227740:intron |
| TATCACAGGACCAATTGGTA+AGG | 0.614979 | 8_2:-3131660 | Msa1227740:CDS |
| TGGAAGATCTCCTCTATGGA+AGG | 0.616327 | 8_2:-3130903 | Msa1227740:intron |
| TGTGATAGCAGAACCTACAA+TGG | 0.642578 | 8_2:+3131676 | None:intergenic |
| AGTTGAAGAAGGCAACGACA+AGG | 0.678134 | 8_2:-3129918 | Msa1227740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr8_2:3130603-3130622 | Msa1227740:intron | 10.0% |
| !! | TATATATATGATTTATCTTA+AGG | - | chr8_2:3131189-3131208 | Msa1227740:CDS | 10.0% |
| !! | ATATATATGATTTATCTTAA+GGG | - | chr8_2:3131190-3131209 | Msa1227740:CDS | 10.0% |
| !! | TATTTGTTTAATATGAAAAT+TGG | - | chr8_2:3130603-3130622 | Msa1227740:intron | 10.0% |
| !! | TATATATATGATTTATCTTA+AGG | - | chr8_2:3131189-3131208 | Msa1227740:CDS | 10.0% |
| !! | ATATATATGATTTATCTTAA+GGG | - | chr8_2:3131190-3131209 | Msa1227740:CDS | 10.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr8_2:3130821-3130840 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr8_2:3130831-3130850 | Msa1227740:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr8_2:3131457-3131476 | None:intergenic | 15.0% |
| !! | TTATGAAAATAAATAGAACA+AGG | + | chr8_2:3130821-3130840 | None:intergenic | 15.0% |
| !!! | ATTTTCATAATTTCAATTTG+AGG | - | chr8_2:3130831-3130850 | Msa1227740:intron | 15.0% |
| !! | ATAAAGTTTATGCAAATTAA+AGG | + | chr8_2:3131457-3131476 | None:intergenic | 15.0% |
| !!! | ACTTACTGAAAATTGAATTT+TGG | - | chr8_2:3130099-3130118 | Msa1227740:intron | 20.0% |
| !! | AAGTTAAACAAACAAAAACA+GGG | + | chr8_2:3130333-3130352 | None:intergenic | 20.0% |
| !! | AAAGTTAAACAAACAAAAAC+AGG | + | chr8_2:3130334-3130353 | None:intergenic | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr8_2:3130745-3130764 | Msa1227740:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr8_2:3131517-3131536 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr8_2:3131517-3131536 | Msa1227740:intron | 20.0% |
| !!! | ACTTACTGAAAATTGAATTT+TGG | - | chr8_2:3130099-3130118 | Msa1227740:intron | 20.0% |
| !! | AAGTTAAACAAACAAAAACA+GGG | + | chr8_2:3130333-3130352 | None:intergenic | 20.0% |
| !! | AAAGTTAAACAAACAAAAAC+AGG | + | chr8_2:3130334-3130353 | None:intergenic | 20.0% |
| !! | ATAAAGATATGTCTACAATT+TGG | - | chr8_2:3130745-3130764 | Msa1227740:intron | 20.0% |
| !! | TAAAAAGAAAAACAGAATTC+TGG | + | chr8_2:3131517-3131536 | None:intergenic | 20.0% |
| !!! | GAATTCTGTTTTTCTTTTTA+AGG | - | chr8_2:3131517-3131536 | Msa1227740:intron | 20.0% |
| !!! | TGAAAATTGAATTTTGGAGA+AGG | - | chr8_2:3130105-3130124 | Msa1227740:intron | 25.0% |
| ! | GCTACAAAATAGACTAATAA+GGG | + | chr8_2:3130229-3130248 | None:intergenic | 25.0% |
| ! | TGCTACAAAATAGACTAATA+AGG | + | chr8_2:3130230-3130249 | None:intergenic | 25.0% |
| !!! | TATTAGTCTATTTTGTAGCA+TGG | - | chr8_2:3130230-3130249 | Msa1227740:intron | 25.0% |
| !!! | TGCTAAGTGAATTTTAGTTT+TGG | - | chr8_2:3130277-3130296 | Msa1227740:intron | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr8_2:3130519-3130538 | None:intergenic | 25.0% |
| ! | TCATTATATTCAAAGCCAAT+AGG | - | chr8_2:3130522-3130541 | Msa1227740:intron | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr8_2:3130570-3130589 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr8_2:3130755-3130774 | Msa1227740:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr8_2:3130912-3130931 | Msa1227740:CDS | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr8_2:3130940-3130959 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr8_2:3130941-3130960 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr8_2:3131012-3131031 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr8_2:3131013-3131032 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr8_2:3131028-3131047 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr8_2:3131408-3131427 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr8_2:3131409-3131428 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr8_2:3131596-3131615 | None:intergenic | 25.0% |
| !! | TTTTCTTTTACTCTTCTCAA+AGG | - | chr8_2:3131603-3131622 | Msa1227740:intron | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr8_2:3131637-3131656 | Msa1227740:CDS | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr8_2:3131650-3131669 | Msa1227740:CDS | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr8_2:3131651-3131670 | Msa1227740:CDS | 25.0% |
| !!! | TGAAAATTGAATTTTGGAGA+AGG | - | chr8_2:3130105-3130124 | Msa1227740:intron | 25.0% |
| ! | GCTACAAAATAGACTAATAA+GGG | + | chr8_2:3130229-3130248 | None:intergenic | 25.0% |
| ! | TGCTACAAAATAGACTAATA+AGG | + | chr8_2:3130230-3130249 | None:intergenic | 25.0% |
| !!! | TATTAGTCTATTTTGTAGCA+TGG | - | chr8_2:3130230-3130249 | Msa1227740:intron | 25.0% |
| !!! | TGCTAAGTGAATTTTAGTTT+TGG | - | chr8_2:3130277-3130296 | Msa1227740:intron | 25.0% |
| !!! | GGCTTTGAATATAATGATAT+AGG | + | chr8_2:3130519-3130538 | None:intergenic | 25.0% |
| ! | TCATTATATTCAAAGCCAAT+AGG | - | chr8_2:3130522-3130541 | Msa1227740:intron | 25.0% |
| ! | TCTAATCAATATGTCATTGA+AGG | + | chr8_2:3130570-3130589 | None:intergenic | 25.0% |
| !! | GTCTACAATTTGGAAAATTT+TGG | - | chr8_2:3130755-3130774 | Msa1227740:intron | 25.0% |
| ! | ATTGTGTTAAAAGAACTTTG+AGG | - | chr8_2:3130912-3130931 | Msa1227740:CDS | 25.0% |
| ! | AGAAACCTTCATTAAATTCA+GGG | + | chr8_2:3130940-3130959 | None:intergenic | 25.0% |
| ! | AAGAAACCTTCATTAAATTC+AGG | + | chr8_2:3130941-3130960 | None:intergenic | 25.0% |
| !!! | CATATGGTTTTTTGATTGTT+GGG | + | chr8_2:3131012-3131031 | None:intergenic | 25.0% |
| !!! | TCATATGGTTTTTTGATTGT+TGG | + | chr8_2:3131013-3131032 | None:intergenic | 25.0% |
| ! | GTAGTTGTATGTATATCATA+TGG | + | chr8_2:3131028-3131047 | None:intergenic | 25.0% |
| ! | TATTTGTAGCTATTCAAAGT+GGG | + | chr8_2:3131408-3131427 | None:intergenic | 25.0% |
| ! | ATATTTGTAGCTATTCAAAG+TGG | + | chr8_2:3131409-3131428 | None:intergenic | 25.0% |
| ! | GAGTAAAAGAAAAACTCTAA+AGG | + | chr8_2:3131596-3131615 | None:intergenic | 25.0% |
| !! | TTTTCTTTTACTCTTCTCAA+AGG | - | chr8_2:3131603-3131622 | Msa1227740:intron | 25.0% |
| ! | TTTGTGTTTGATCAATCATA+TGG | - | chr8_2:3131637-3131656 | Msa1227740:CDS | 25.0% |
| !!! | AATCATATGGTTTTGTAGAT+TGG | - | chr8_2:3131650-3131669 | Msa1227740:CDS | 25.0% |
| !!! | ATCATATGGTTTTGTAGATT+GGG | - | chr8_2:3131651-3131670 | Msa1227740:CDS | 25.0% |
| GTATTAAAACTGCCACAAAA+GGG | + | chr8_2:3130052-3130071 | None:intergenic | 30.0% | |
| TGTATTAAAACTGCCACAAA+AGG | + | chr8_2:3130053-3130072 | None:intergenic | 30.0% | |
| GCAACAATAACATTATTGCA+AGG | + | chr8_2:3130151-3130170 | None:intergenic | 30.0% | |
| TAAACAAACAAAAACAGGGA+AGG | + | chr8_2:3130329-3130348 | None:intergenic | 30.0% | |
| !! | TTTGTTTAACTTTTCGATCG+TGG | - | chr8_2:3130341-3130360 | Msa1227740:intron | 30.0% |
| ATACAAAACTCTGTCATTGA+AGG | - | chr8_2:3130379-3130398 | Msa1227740:intron | 30.0% | |
| TACAAAACTCTGTCATTGAA+GGG | - | chr8_2:3130380-3130399 | Msa1227740:intron | 30.0% | |
| AACCTAAAAATAGCACCTAT+TGG | + | chr8_2:3130540-3130559 | None:intergenic | 30.0% | |
| AATTTGATATCCAGACAACT+TGG | - | chr8_2:3130662-3130681 | Msa1227740:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr8_2:3130890-3130909 | None:intergenic | 30.0% | |
| AGGGACTATAACAATAAATG+AGG | - | chr8_2:3131209-3131228 | Msa1227740:intron | 30.0% | |
| AAATAGAGATGTAGAGAAGT+AGG | + | chr8_2:3131254-3131273 | None:intergenic | 30.0% | |
| TACTTCTCTACATCTCTATT+TGG | - | chr8_2:3131253-3131272 | Msa1227740:intron | 30.0% | |
| ACTTCTCTACATCTCTATTT+GGG | - | chr8_2:3131254-3131273 | Msa1227740:intron | 30.0% | |
| TGTTTGCATTTCATTGAGTT+AGG | - | chr8_2:3131304-3131323 | Msa1227740:intron | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr8_2:3131444-3131463 | None:intergenic | 30.0% | |
| GTATTAAAACTGCCACAAAA+GGG | + | chr8_2:3130052-3130071 | None:intergenic | 30.0% | |
| TGTATTAAAACTGCCACAAA+AGG | + | chr8_2:3130053-3130072 | None:intergenic | 30.0% | |
| GCAACAATAACATTATTGCA+AGG | + | chr8_2:3130151-3130170 | None:intergenic | 30.0% | |
| TAAACAAACAAAAACAGGGA+AGG | + | chr8_2:3130329-3130348 | None:intergenic | 30.0% | |
| !! | TTTGTTTAACTTTTCGATCG+TGG | - | chr8_2:3130341-3130360 | Msa1227740:intron | 30.0% |
| ATACAAAACTCTGTCATTGA+AGG | - | chr8_2:3130379-3130398 | Msa1227740:intron | 30.0% | |
| TACAAAACTCTGTCATTGAA+GGG | - | chr8_2:3130380-3130399 | Msa1227740:intron | 30.0% | |
| AACCTAAAAATAGCACCTAT+TGG | + | chr8_2:3130540-3130559 | None:intergenic | 30.0% | |
| AATTTGATATCCAGACAACT+TGG | - | chr8_2:3130662-3130681 | Msa1227740:intron | 30.0% | |
| CTGCTATTAGCATCAAATAT+AGG | + | chr8_2:3130890-3130909 | None:intergenic | 30.0% | |
| AGGGACTATAACAATAAATG+AGG | - | chr8_2:3131209-3131228 | Msa1227740:intron | 30.0% | |
| AAATAGAGATGTAGAGAAGT+AGG | + | chr8_2:3131254-3131273 | None:intergenic | 30.0% | |
| TACTTCTCTACATCTCTATT+TGG | - | chr8_2:3131253-3131272 | Msa1227740:intron | 30.0% | |
| ACTTCTCTACATCTCTATTT+GGG | - | chr8_2:3131254-3131273 | Msa1227740:intron | 30.0% | |
| TGTTTGCATTTCATTGAGTT+AGG | - | chr8_2:3131304-3131323 | Msa1227740:intron | 30.0% | |
| AAATTAAAGGAACTCACAGT+GGG | + | chr8_2:3131444-3131463 | None:intergenic | 30.0% | |
| ! | ATGTGTCTGATTTAAAGCTG+AGG | - | chr8_2:3130171-3130190 | Msa1227740:intron | 35.0% |
| ACAAAAACAGGGAAGGAATA+AGG | + | chr8_2:3130322-3130341 | None:intergenic | 35.0% | |
| !! | GAGTTTTGTATGACCAGAAT+TGG | + | chr8_2:3130370-3130389 | None:intergenic | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr8_2:3130444-3130463 | Msa1227740:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr8_2:3130479-3130498 | Msa1227740:intron | 35.0% |
| !!! | AGCCAATAGGTGCTATTTTT+AGG | - | chr8_2:3130535-3130554 | Msa1227740:intron | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr8_2:3131040-3131059 | Msa1227740:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr8_2:3131443-3131462 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr8_2:3131445-3131464 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr8_2:3131580-3131599 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr8_2:3131667-3131686 | Msa1227740:CDS | 35.0% | |
| ! | ATGTGTCTGATTTAAAGCTG+AGG | - | chr8_2:3130171-3130190 | Msa1227740:intron | 35.0% |
| ACAAAAACAGGGAAGGAATA+AGG | + | chr8_2:3130322-3130341 | None:intergenic | 35.0% | |
| !! | GAGTTTTGTATGACCAGAAT+TGG | + | chr8_2:3130370-3130389 | None:intergenic | 35.0% |
| AGTGGCAAGATATACTATCA+AGG | - | chr8_2:3130444-3130463 | Msa1227740:intron | 35.0% | |
| ! | CTGCAATGCTATATGTTTTC+AGG | - | chr8_2:3130479-3130498 | Msa1227740:intron | 35.0% |
| !!! | AGCCAATAGGTGCTATTTTT+AGG | - | chr8_2:3130535-3130554 | Msa1227740:intron | 35.0% |
| ACAACTACAGCTACAATTAC+AGG | - | chr8_2:3131040-3131059 | Msa1227740:intron | 35.0% | |
| AATTAAAGGAACTCACAGTG+GGG | + | chr8_2:3131443-3131462 | None:intergenic | 35.0% | |
| CAAATTAAAGGAACTCACAG+TGG | + | chr8_2:3131445-3131464 | None:intergenic | 35.0% | |
| !! | CTAAAGGCACTTCATTGTTT+AGG | + | chr8_2:3131580-3131599 | None:intergenic | 35.0% |
| GATTGGGTAAAAGTTGAAGA+AGG | - | chr8_2:3131667-3131686 | Msa1227740:CDS | 35.0% | |
| TGTGATAGCAGAACCTACAA+TGG | + | chr8_2:3129923-3129942 | None:intergenic | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+AGG | - | chr8_2:3129922-3129941 | Msa1227740:CDS | 40.0% | |
| TATCACAGGACCAATTGGTA+AGG | - | chr8_2:3129936-3129955 | Msa1227740:intron | 40.0% | |
| GCAACAACATTTACACTCTC+AGG | + | chr8_2:3130197-3130216 | None:intergenic | 40.0% | |
| TTCACTTAGCATTGCTCAAG+AGG | + | chr8_2:3130268-3130287 | None:intergenic | 40.0% | |
| AAACTCTGTCATTGAAGGGA+AGG | - | chr8_2:3130384-3130403 | Msa1227740:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr8_2:3130706-3130725 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr8_2:3130932-3130951 | Msa1227740:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr8_2:3130947-3130966 | Msa1227740:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr8_2:3130948-3130967 | Msa1227740:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr8_2:3130977-3130996 | Msa1227740:intron | 40.0% | |
| !!! | ACTGATCATGCTGCTTTTTC+CGG | + | chr8_2:3131119-3131138 | None:intergenic | 40.0% |
| CATCTCTATTTGGGTGTGAA+TGG | - | chr8_2:3131263-3131282 | Msa1227740:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr8_2:3131502-3131521 | None:intergenic | 40.0% | |
| TGTGATAGCAGAACCTACAA+TGG | + | chr8_2:3129923-3129942 | None:intergenic | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+AGG | - | chr8_2:3129922-3129941 | Msa1227740:CDS | 40.0% | |
| TATCACAGGACCAATTGGTA+AGG | - | chr8_2:3129936-3129955 | Msa1227740:intron | 40.0% | |
| GCAACAACATTTACACTCTC+AGG | + | chr8_2:3130197-3130216 | None:intergenic | 40.0% | |
| TTCACTTAGCATTGCTCAAG+AGG | + | chr8_2:3130268-3130287 | None:intergenic | 40.0% | |
| AAACTCTGTCATTGAAGGGA+AGG | - | chr8_2:3130384-3130403 | Msa1227740:intron | 40.0% | |
| GAATTGCAAACCTTCCATAG+AGG | + | chr8_2:3130706-3130725 | None:intergenic | 40.0% | |
| AGGAGCCCTGAATTTAATGA+AGG | - | chr8_2:3130932-3130951 | Msa1227740:intron | 40.0% | |
| AATGAAGGTTTCTTCACCTG+TGG | - | chr8_2:3130947-3130966 | Msa1227740:intron | 40.0% | |
| ATGAAGGTTTCTTCACCTGT+GGG | - | chr8_2:3130948-3130967 | Msa1227740:intron | 40.0% | |
| AAGTTGTCCCTTCTGGATTT+GGG | - | chr8_2:3130977-3130996 | Msa1227740:intron | 40.0% | |
| !!! | ACTGATCATGCTGCTTTTTC+CGG | + | chr8_2:3131119-3131138 | None:intergenic | 40.0% |
| CATCTCTATTTGGGTGTGAA+TGG | - | chr8_2:3131263-3131282 | Msa1227740:intron | 40.0% | |
| AATTCTGGTACTAGAGAGTC+AGG | + | chr8_2:3131502-3131521 | None:intergenic | 40.0% | |
| TCTGCTATCACAGGACCAAT+TGG | - | chr8_2:3129931-3129950 | Msa1227740:CDS | 45.0% | |
| TCAGCACACTCCTTACCAAT+TGG | + | chr8_2:3129949-3129968 | None:intergenic | 45.0% | |
| ! | GTAAGGAGTGTGCTGATCTT+TGG | - | chr8_2:3129953-3129972 | Msa1227740:intron | 45.0% |
| ATTGCAGCACTTGCAATCCT+AGG | + | chr8_2:3129979-3129998 | None:intergenic | 45.0% | |
| ! | GTAGTTCCAATGCCCTTTTG+TGG | - | chr8_2:3130037-3130056 | Msa1227740:intron | 45.0% |
| ! | AAACTGCCACAAAAGGGCAT+TGG | + | chr8_2:3130046-3130065 | None:intergenic | 45.0% |
| TCGATCGTGGAATCCAATTC+TGG | - | chr8_2:3130354-3130373 | Msa1227740:intron | 45.0% | |
| CTGTCATTGAAGGGAAGGTT+TGG | - | chr8_2:3130389-3130408 | Msa1227740:intron | 45.0% | |
| TCATTGAAGGGAAGGTTTGG+AGG | - | chr8_2:3130392-3130411 | Msa1227740:intron | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr8_2:3130693-3130712 | Msa1227740:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr8_2:3130949-3130968 | Msa1227740:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr8_2:3130976-3130995 | Msa1227740:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr8_2:3130978-3130997 | Msa1227740:intron | 45.0% | |
| !!! | CTGATCATGCTGCTTTTTCC+GGG | + | chr8_2:3131118-3131137 | None:intergenic | 45.0% |
| CTATTTGGGTGTGAATGGAG+AGG | - | chr8_2:3131268-3131287 | Msa1227740:intron | 45.0% | |
| GTGAATGGAGAGGTAGATCT+CGG | - | chr8_2:3131278-3131297 | Msa1227740:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr8_2:3131376-3131395 | Msa1227740:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr8_2:3131678-3131697 | Msa1227740:CDS | 45.0% | |
| TCTGCTATCACAGGACCAAT+TGG | - | chr8_2:3129931-3129950 | Msa1227740:CDS | 45.0% | |
| TCAGCACACTCCTTACCAAT+TGG | + | chr8_2:3129949-3129968 | None:intergenic | 45.0% | |
| ! | GTAAGGAGTGTGCTGATCTT+TGG | - | chr8_2:3129953-3129972 | Msa1227740:intron | 45.0% |
| ATTGCAGCACTTGCAATCCT+AGG | + | chr8_2:3129979-3129998 | None:intergenic | 45.0% | |
| ! | GTAGTTCCAATGCCCTTTTG+TGG | - | chr8_2:3130037-3130056 | Msa1227740:intron | 45.0% |
| ! | AAACTGCCACAAAAGGGCAT+TGG | + | chr8_2:3130046-3130065 | None:intergenic | 45.0% |
| TCGATCGTGGAATCCAATTC+TGG | - | chr8_2:3130354-3130373 | Msa1227740:intron | 45.0% | |
| CTGTCATTGAAGGGAAGGTT+TGG | - | chr8_2:3130389-3130408 | Msa1227740:intron | 45.0% | |
| TCATTGAAGGGAAGGTTTGG+AGG | - | chr8_2:3130392-3130411 | Msa1227740:intron | 45.0% | |
| TGGAAGATCTCCTCTATGGA+AGG | - | chr8_2:3130693-3130712 | Msa1227740:intron | 45.0% | |
| TGAAGGTTTCTTCACCTGTG+GGG | - | chr8_2:3130949-3130968 | Msa1227740:intron | 45.0% | |
| GAAGTTGTCCCTTCTGGATT+TGG | - | chr8_2:3130976-3130995 | Msa1227740:intron | 45.0% | |
| AGTTGTCCCTTCTGGATTTG+GGG | - | chr8_2:3130978-3130997 | Msa1227740:intron | 45.0% | |
| !!! | CTGATCATGCTGCTTTTTCC+GGG | + | chr8_2:3131118-3131137 | None:intergenic | 45.0% |
| CTATTTGGGTGTGAATGGAG+AGG | - | chr8_2:3131268-3131287 | Msa1227740:intron | 45.0% | |
| GTGAATGGAGAGGTAGATCT+CGG | - | chr8_2:3131278-3131297 | Msa1227740:intron | 45.0% | |
| AATGTGTGATGCTGCTGTCT+TGG | - | chr8_2:3131376-3131395 | Msa1227740:intron | 45.0% | |
| AGTTGAAGAAGGCAACGACA+AGG | - | chr8_2:3131678-3131697 | Msa1227740:CDS | 45.0% | |
| ! | AGTGTGCTGATCTTTGGCCT+AGG | - | chr8_2:3129959-3129978 | Msa1227740:intron | 50.0% |
| TTGAAGGGAAGGTTTGGAGG+CGG | - | chr8_2:3130395-3130414 | Msa1227740:intron | 50.0% | |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr8_2:3130689-3130708 | Msa1227740:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr8_2:3130970-3130989 | Msa1227740:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr8_2:3130987-3131006 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr8_2:3130988-3131007 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr8_2:3131097-3131116 | Msa1227740:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr8_2:3131106-3131125 | None:intergenic | 50.0% |
| AATGGAGAGGTAGATCTCGG+CGG | - | chr8_2:3131281-3131300 | Msa1227740:intron | 50.0% | |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr8_2:3131497-3131516 | None:intergenic | 50.0% | |
| ! | AGTGTGCTGATCTTTGGCCT+AGG | - | chr8_2:3129959-3129978 | Msa1227740:intron | 50.0% |
| TTGAAGGGAAGGTTTGGAGG+CGG | - | chr8_2:3130395-3130414 | Msa1227740:intron | 50.0% | |
| CAGCTGGAAGATCTCCTCTA+TGG | - | chr8_2:3130689-3130708 | Msa1227740:intron | 50.0% | |
| GGAGATGAAGTTGTCCCTTC+TGG | - | chr8_2:3130970-3130989 | Msa1227740:intron | 50.0% | |
| CACCAACCCCAAATCCAGAA+GGG | + | chr8_2:3130987-3131006 | None:intergenic | 50.0% | |
| ACACCAACCCCAAATCCAGA+AGG | + | chr8_2:3130988-3131007 | None:intergenic | 50.0% | |
| CTCTATCCTGTCATTGCACC+CGG | - | chr8_2:3131097-3131116 | Msa1227740:intron | 50.0% | |
| ! | CTTTTTCCGGGTGCAATGAC+AGG | + | chr8_2:3131106-3131125 | None:intergenic | 50.0% |
| AATGGAGAGGTAGATCTCGG+CGG | - | chr8_2:3131281-3131300 | Msa1227740:intron | 50.0% | |
| TGGTACTAGAGAGTCAGGCA+CGG | + | chr8_2:3131497-3131516 | None:intergenic | 50.0% | |
| AGGCGGTGAAGCATGCTGAT+GGG | - | chr8_2:3130412-3130431 | Msa1227740:intron | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr8_2:3130675-3130694 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr8_2:3130673-3130692 | Msa1227740:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr8_2:3130966-3130985 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr8_2:3130982-3131001 | Msa1227740:intron | 55.0% |
| AGGCGGTGAAGCATGCTGAT+GGG | - | chr8_2:3130412-3130431 | Msa1227740:intron | 55.0% | |
| CAGCTGCAGTCCAAGTTGTC+TGG | + | chr8_2:3130675-3130694 | None:intergenic | 55.0% | |
| CAGACAACTTGGACTGCAGC+TGG | - | chr8_2:3130673-3130692 | Msa1227740:intron | 55.0% | |
| GGACAACTTCATCTCCCCAC+AGG | + | chr8_2:3130966-3130985 | None:intergenic | 55.0% | |
| ! | GTCCCTTCTGGATTTGGGGT+TGG | - | chr8_2:3130982-3131001 | Msa1227740:intron | 55.0% |
| GAGGCGGTGAAGCATGCTGA+TGG | - | chr8_2:3130411-3130430 | Msa1227740:intron | 60.0% | |
| GGCGGTGAAGCATGCTGATG+GGG | - | chr8_2:3130413-3130432 | Msa1227740:intron | 60.0% | |
| AAGCATGCTGATGGGGCTGC+TGG | - | chr8_2:3130420-3130439 | Msa1227740:intron | 60.0% | |
| GAGGCGGTGAAGCATGCTGA+TGG | - | chr8_2:3130411-3130430 | Msa1227740:intron | 60.0% | |
| GGCGGTGAAGCATGCTGATG+GGG | - | chr8_2:3130413-3130432 | Msa1227740:intron | 60.0% | |
| AAGCATGCTGATGGGGCTGC+TGG | - | chr8_2:3130420-3130439 | Msa1227740:intron | 60.0% | |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr8_2:3130426-3130445 | Msa1227740:intron | 65.0% | |
| GCTGATGGGGCTGCTGGAAG+TGG | - | chr8_2:3130426-3130445 | Msa1227740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3129913 | 3131705 | 3129913 | ID=Msa1227740;Name=Msa1227740 |
| chr8_2 | mRNA | 3129913 | 3131705 | 3129913 | ID=Msa1227740-mRNA-1;Parent=Msa1227740;Name=Msa1227740-mRNA-1;_AED=0.42;_eAED=0.52;_QI=0|0.33|0.25|1|0.33|0.5|4|0|77 |
| chr8_2 | exon | 3131614 | 3131705 | 3131614 | ID=Msa1227740-mRNA-1:exon:917;Parent=Msa1227740-mRNA-1 |
| chr8_2 | exon | 3131153 | 3131217 | 3131153 | ID=Msa1227740-mRNA-1:exon:916;Parent=Msa1227740-mRNA-1 |
| chr8_2 | exon | 3130904 | 3130942 | 3130904 | ID=Msa1227740-mRNA-1:exon:915;Parent=Msa1227740-mRNA-1 |
| chr8_2 | exon | 3129913 | 3129950 | 3129913 | ID=Msa1227740-mRNA-1:exon:914;Parent=Msa1227740-mRNA-1 |
| chr8_2 | CDS | 3131614 | 3131705 | 3131614 | ID=Msa1227740-mRNA-1:cds;Parent=Msa1227740-mRNA-1 |
| chr8_2 | CDS | 3131153 | 3131217 | 3131153 | ID=Msa1227740-mRNA-1:cds;Parent=Msa1227740-mRNA-1 |
| chr8_2 | CDS | 3130904 | 3130942 | 3130904 | ID=Msa1227740-mRNA-1:cds;Parent=Msa1227740-mRNA-1 |
| chr8_2 | CDS | 3129913 | 3129950 | 3129913 | ID=Msa1227740-mRNA-1:cds;Parent=Msa1227740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
