AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509500 MtrunA17_Chr3g0114501 98.639 294 4 0 1 294 1 294 0.0 609
Msa0509500 MtrunA17_Chr7g0261731 55.017 289 122 4 3 284 12 299 3.79e-120 348
Msa0509500 MtrunA17_Chr7g0261751 53.535 297 132 3 3 294 12 307 3.74e-118 349
Msa0509500 MtrunA17_Chr7g0261791 55.290 293 124 3 4 290 11 302 8.28e-117 348
Msa0509500 MtrunA17_Chr7g0261771 52.703 296 134 3 3 293 12 306 3.46e-116 347
Msa0509500 MtrunA17_Chr1g0166711 54.608 293 128 2 6 294 9 300 2.22e-114 342
Msa0509500 MtrunA17_Chr7g0261881 53.691 298 132 3 2 294 7 303 3.76e-114 341
Msa0509500 MtrunA17_Chr7g0261851 54.237 295 129 3 5 294 11 304 1.02e-113 340
Msa0509500 MtrunA17_Chr1g0166791 53.356 298 134 2 1 294 3 299 8.75e-113 337
Msa0509500 MtrunA17_Chr1g0187241 53.691 298 131 3 3 294 7 303 1.65e-111 334
Msa0509500 MtrunA17_Chr7g0261811 52.027 296 136 3 3 293 8 302 1.19e-108 327
Msa0509500 MtrunA17_Chr1g0166741 51.536 293 137 2 6 294 11 302 1.38e-104 316
Msa0509500 MtrunA17_Chr8g0375311 44.898 294 160 2 2 294 20 312 1.17e-93 288
Msa0509500 MtrunA17_Chr7g0241741 45.734 293 156 3 3 294 2 292 8.81e-93 285
Msa0509500 MtrunA17_Chr8g0375291 45.238 294 159 2 2 294 20 312 5.84e-92 284
Msa0509500 MtrunA17_Chr1g0166771 51.527 262 122 2 37 294 6 266 7.25e-92 282
Msa0509500 MtrunA17_Chr8g0375331 43.493 292 163 2 4 294 6 296 2.15e-87 271
Msa0509500 MtrunA17_Chr8g0375321 42.808 292 165 2 4 294 19 309 4.39e-87 271
Msa0509500 MtrunA17_Chr8g0375351 42.517 294 167 2 2 294 20 312 2.32e-85 266
Msa0509500 MtrunA17_Chr3g0104011 44.218 294 163 1 1 294 1 293 2.46e-85 266
Msa0509500 MtrunA17_Chr8g0375341 42.857 294 166 2 2 294 20 312 4.76e-85 266
Msa0509500 MtrunA17_Chr4g0005901 44.369 293 159 3 4 294 12 302 1.56e-84 264
Msa0509500 MtrunA17_Chr8g0375361 42.321 293 165 3 5 294 20 311 6.02e-77 245
Msa0509500 MtrunA17_Chr4g0014871 42.509 287 151 5 1 286 9 282 2.37e-73 235
Msa0509500 MtrunA17_Chr7g0240381 39.933 298 172 3 1 294 4 298 2.50e-73 235
Msa0509500 MtrunA17_Chr3g0112671 40.741 270 158 2 4 273 15 282 6.85e-73 234
Msa0509500 MtrunA17_Chr4g0008651 38.644 295 176 3 2 294 12 303 2.05e-70 228
Msa0509500 MtrunA17_Chr3g0142111 39.373 287 171 3 10 294 34 319 6.79e-70 219
Msa0509500 MtrunA17_Chr3g0112611 38.014 292 175 4 4 294 14 300 9.20e-68 221
Msa0509500 MtrunA17_Chr3g0142101 38.889 288 171 4 10 294 23 308 1.48e-66 218
Msa0509500 MtrunA17_Chr4g0014791 44.151 265 137 3 10 273 17 271 2.66e-66 216
Msa0509500 MtrunA17_Chr4g0014841 43.796 274 142 4 1 273 9 271 1.39e-64 212
Msa0509500 MtrunA17_Chr4g0014801 43.396 265 139 4 10 273 17 271 1.44e-64 212
Msa0509500 MtrunA17_Chr4g0014781 41.281 281 153 5 10 289 17 286 2.18e-64 211
Msa0509500 MtrunA17_Chr3g0077151 40.647 278 149 3 8 281 14 279 1.61e-63 209
Msa0509500 MtrunA17_Chr3g0142091 38.811 286 170 4 13 294 17 301 1.67e-60 201
Msa0509500 MtrunA17_Chr7g0217461 35.473 296 179 4 5 294 7 296 1.13e-58 197
Msa0509500 MtrunA17_Chr7g0261661 49.206 189 90 3 110 293 1 188 1.19e-58 195
Msa0509500 MtrunA17_Chr4g0054891 34.932 292 186 3 2 290 90 380 7.67e-58 196
Msa0509500 MtrunA17_Chr5g0400371 34.256 289 186 3 5 290 95 382 9.17e-58 196
Msa0509500 MtrunA17_Chr5g0422881 37.302 252 155 2 24 273 22 272 7.55e-57 192
Msa0509500 MtrunA17_Chr1g0166731 48.947 190 92 2 109 294 9 197 1.43e-56 189
Msa0509500 MtrunA17_Chr7g0214731 35.410 305 185 5 1 294 38 341 3.88e-56 191
Msa0509500 MtrunA17_Chr5g0399061 37.681 276 168 4 14 286 19 293 1.72e-53 183
Msa0509500 MtrunA17_Chr5g0415791 39.382 259 144 6 16 267 27 279 5.92e-53 182
Msa0509500 MtrunA17_Chr4g0056431 38.328 287 170 5 14 294 17 302 1.71e-52 181
Msa0509500 MtrunA17_Chr7g0255611 34.286 280 179 4 13 290 22 298 1.36e-51 178
Msa0509500 MtrunA17_Chr5g0399071 39.924 263 154 3 14 273 17 278 1.49e-51 178
Msa0509500 MtrunA17_Chr7g0214461 32.979 282 184 4 16 294 72 351 8.80e-51 176
Msa0509500 MtrunA17_Chr5g0439381 37.545 277 166 2 4 274 10 285 1.72e-50 175
Msa0509500 MtrunA17_Chr8g0353031 47.872 188 82 1 23 210 19 190 1.86e-50 175
Msa0509500 MtrunA17_Chr1g0213711 32.770 296 194 5 1 294 1 293 4.74e-50 174
Msa0509500 MtrunA17_Chr7g0218851 34.859 284 178 5 16 294 40 321 2.52e-48 169
Msa0509500 MtrunA17_Chr7g0255621 33.721 258 168 3 18 273 16 272 5.96e-48 169
Msa0509500 MtrunA17_Chr4g0011041 31.757 296 197 4 2 294 16 309 6.93e-48 168
Msa0509500 MtrunA17_Chr7g0255601 35.458 251 159 3 24 272 29 278 1.44e-47 167
Msa0509500 MtrunA17_Chr2g0284701 33.333 282 183 3 1 277 11 292 1.98e-47 167
Msa0509500 MtrunA17_Chr4g0060001 36.226 265 157 5 12 266 14 276 2.64e-47 167
Msa0509500 MtrunA17_Chr7g0240271 34.328 268 173 3 2 267 4 270 4.07e-47 166
Msa0509500 MtrunA17_Chr1g0147631 34.559 272 168 4 4 270 11 277 9.74e-47 165
Msa0509500 MtrunA17_Chr4g0059991 32.857 280 178 5 21 294 21 296 1.99e-46 164
Msa0509500 MtrunA17_Chr3g0133341 33.840 263 166 2 18 273 10 271 2.19e-46 164
Msa0509500 MtrunA17_Chr8g0379971 30.449 312 196 3 4 294 2 313 4.12e-46 164
Msa0509500 MtrunA17_Chr1g0157601 31.786 280 169 4 26 286 19 295 4.67e-46 163
Msa0509500 MtrunA17_Chr7g0261671 62.264 106 40 0 3 108 13 118 5.14e-46 151
Msa0509500 MtrunA17_Chr1g0193391 32.759 290 181 5 10 294 3 283 8.80e-46 162
Msa0509500 MtrunA17_Chr1g0166721 62.500 104 39 0 5 108 8 111 2.09e-45 150
Msa0509500 MtrunA17_Chr4g0059971 34.661 251 160 3 28 275 40 289 3.73e-45 161
Msa0509500 MtrunA17_Chr4g0059981 35.685 241 150 2 28 264 37 276 4.71e-45 160
Msa0509500 MtrunA17_Chr4g0063591 37.847 288 176 3 1 286 1 287 1.38e-42 154
Msa0509500 MtrunA17_Chr8g0390331 32.734 278 172 5 1 275 5 270 2.00e-42 153
Msa0509500 MtrunA17_Chr2g0331471 32.281 285 167 7 24 286 90 370 1.43e-41 152
Msa0509500 MtrunA17_Chr7g0271221 33.088 272 175 4 24 294 19 284 1.72e-41 150
Msa0509500 MtrunA17_Chr2g0276751 31.757 296 186 6 2 294 18 300 3.00e-41 150
Msa0509500 MtrunA17_Chr7g0240281 33.871 248 159 2 24 267 26 272 4.09e-41 150
Msa0509500 MtrunA17_Chr5g0415961 32.567 261 173 2 1 259 3 262 7.00e-41 149
Msa0509500 MtrunA17_Chr2g0331481 32.971 276 159 7 33 286 36 307 7.50e-41 149
Msa0509500 MtrunA17_Chr1g0157611 31.673 281 168 5 26 286 20 296 3.45e-40 147
Msa0509500 MtrunA17_Chr8g0362711 31.365 271 183 2 1 269 3 272 1.46e-39 145
Msa0509500 MtrunA17_Chr2g0331511 35.270 241 150 5 33 269 32 270 1.91e-38 143
Msa0509500 MtrunA17_Chr8g0362781 29.961 257 173 2 16 266 24 279 3.86e-38 141
Msa0509500 MtrunA17_Chr3g0112651 39.394 165 98 2 109 273 21 183 3.48e-37 131
Msa0509500 MtrunA17_Chr2g0331521 26.821 302 194 6 6 286 10 305 5.67e-37 138
Msa0509500 MtrunA17_Chr4g0003761 29.545 308 184 9 1 286 16 312 3.53e-35 133
Msa0509500 MtrunA17_Chr4g0011471 32.157 255 167 3 43 294 37 288 3.98e-35 133
Msa0509500 MtrunA17_Chr2g0331461 32.246 276 161 8 33 286 36 307 3.35e-34 131
Msa0509500 MtrunA17_Chr8g0379991 28.358 268 159 4 43 277 1 268 2.14e-33 128
Msa0509500 MtrunA17_Chr4g0069581 29.457 258 173 4 40 294 4 255 1.82e-32 125
Msa0509500 MtrunA17_Chr2g0326211 31.317 281 178 5 10 281 2 276 4.22e-32 124
Msa0509500 MtrunA17_Chr4g0014861 42.384 151 81 3 137 286 12 157 4.87e-32 123
Msa0509500 MtrunA17_Chr1g0157621 33.778 225 145 3 43 266 1 222 7.38e-32 124
Msa0509500 MtrunA17_Chr4g0014851 47.222 108 57 0 1 108 9 116 3.35e-31 114
Msa0509500 MtrunA17_Chr2g0325951 30.000 270 174 6 10 270 2 265 4.29e-31 121
Msa0509500 MtrunA17_Chr1g0177591 28.105 306 186 11 1 286 24 315 5.92e-31 121
Msa0509500 MtrunA17_Chr6g0451841 31.502 273 147 5 30 278 13 269 1.33e-30 120
Msa0509500 MtrunA17_Chr2g0325961 31.985 272 170 5 10 272 2 267 6.95e-28 112
Msa0509500 MtrunA17_Chr3g0112661 43.137 102 58 0 7 108 16 117 5.71e-26 100
Msa0509500 MtrunA17_Chr4g0060061 34.586 133 83 1 127 259 4 132 5.76e-23 92.0
Msa0509500 MtrunA17_Chr1g0147591 37.500 160 82 6 142 294 3 151 2.96e-22 92.0
Msa0509500 MtrunA17_Chr8g0362801 35.766 137 87 1 131 267 28 163 6.16e-22 95.1
Msa0509500 MtrunA17_Chr3g0082631 32.500 160 91 2 104 263 9 151 1.11e-20 91.7
Msa0509500 MtrunA17_Chr7g0240151 33.750 160 103 3 110 267 1 159 1.92e-20 90.9
Msa0509500 MtrunA17_Chr7g0235521 33.750 160 103 3 110 267 1 159 2.35e-20 90.9
Msa0509500 MtrunA17_Chr7g0240211 33.125 160 104 3 110 267 1 159 1.50e-19 88.2
Msa0509500 MtrunA17_Chr7g0240131 33.125 160 104 3 110 267 1 159 1.53e-19 88.2
Msa0509500 MtrunA17_Chr7g0240181 33.125 160 104 3 110 267 1 159 1.75e-19 88.2
Msa0509500 MtrunA17_Chr3g0082621 53.521 71 33 0 38 108 2 72 3.54e-18 77.8
Msa0509500 MtrunA17_Chr1g0177611 28.313 166 100 4 138 286 23 186 8.95e-18 83.2
Msa0509500 MtrunA17_Chr7g0240221 37.895 95 59 0 2 96 7 101 1.89e-17 76.6
Msa0509500 MtrunA17_Chr7g0240191 37.895 95 59 0 2 96 7 101 1.89e-17 76.6
Msa0509500 MtrunA17_Chr7g0240161 37.895 95 59 0 2 96 7 101 1.89e-17 76.6
Msa0509500 MtrunA17_Chr7g0240141 37.895 95 59 0 2 96 7 101 1.95e-17 76.6
Msa0509500 MtrunA17_Chr1g0177631 29.518 166 98 5 138 286 23 186 2.89e-17 81.6
Msa0509500 MtrunA17_Chr8g0362791 40.000 85 51 0 28 112 42 126 5.39e-17 76.3
Msa0509500 MtrunA17_Chr7g0234381 33.766 154 94 3 109 262 3 148 1.42e-16 79.3
Msa0509500 MtrunA17_Chr7g0234181 36.800 125 75 2 138 262 23 143 3.79e-16 78.2
Msa0509500 MtrunA17_Chr7g0234151 33.548 155 93 4 109 262 3 148 7.62e-16 77.4
Msa0509500 MtrunA17_Chr7g0235511 37.113 97 59 1 2 96 7 103 1.29e-15 72.0
Msa0509500 MtrunA17_Chr5g0415841 26.812 138 100 1 129 266 26 162 4.31e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509500 AT2G40460.1 72.449 294 81 0 1 294 1 294 4.45e-161 461
Msa0509500 AT5G46050.1 50.842 297 141 2 2 294 5 300 1.97e-103 313
Msa0509500 AT5G46040.1 51.342 298 138 4 2 294 5 300 2.59e-102 311
Msa0509500 AT3G54140.1 45.578 294 159 1 1 294 1 293 3.06e-92 284
Msa0509500 AT3G54140.2 45.578 294 159 1 1 294 1 293 3.06e-92 284
Msa0509500 AT2G02040.1 45.614 285 153 2 7 290 24 307 4.62e-92 284
Msa0509500 AT5G01180.2 45.238 294 158 3 1 293 1 292 1.75e-90 280
Msa0509500 AT5G01180.3 45.238 294 158 3 1 293 1 292 1.75e-90 280
Msa0509500 AT5G01180.1 45.238 294 158 3 1 293 1 292 1.75e-90 280
Msa0509500 AT1G62200.1 45.804 286 150 2 9 290 37 321 2.57e-90 280
Msa0509500 AT1G62200.2 45.804 286 150 2 9 290 37 321 9.06e-90 279
Msa0509500 AT1G62200.3 45.804 286 150 2 9 290 51 335 1.50e-89 279
Msa0509500 AT2G02020.2 44.815 270 147 2 2 270 20 288 8.03e-84 261
Msa0509500 AT2G02020.1 44.815 270 147 2 2 270 20 288 1.32e-83 261
Msa0509500 AT2G37900.1 40.809 272 159 2 2 273 16 285 9.72e-74 236
Msa0509500 AT3G53960.1 38.989 277 167 2 2 278 15 289 1.01e-68 224
Msa0509500 AT1G22570.1 43.728 279 150 3 5 277 12 289 7.90e-66 216
Msa0509500 AT1G72125.1 44.203 276 142 6 4 276 10 276 2.46e-64 212
Msa0509500 AT1G72120.1 43.321 277 145 5 4 277 10 277 6.95e-64 210
Msa0509500 AT1G22540.1 42.570 249 141 2 12 259 18 265 3.73e-60 201
Msa0509500 AT1G68570.1 39.927 273 159 3 2 272 3 272 1.51e-59 200
Msa0509500 AT1G22550.1 42.143 280 148 5 5 277 12 284 2.05e-58 196
Msa0509500 AT3G54450.1 41.772 237 124 2 26 262 14 236 2.54e-57 193
Msa0509500 AT1G68570.2 43.038 237 132 2 38 272 7 242 8.37e-57 192
Msa0509500 AT1G22570.2 43.373 249 135 2 35 277 4 252 2.74e-56 190
Msa0509500 AT1G12110.1 36.667 300 182 4 2 294 5 303 7.40e-56 190
Msa0509500 AT1G72140.1 39.623 265 147 4 12 267 22 282 7.41e-56 189
Msa0509500 AT5G13400.1 35.764 288 174 4 13 290 52 338 4.08e-55 188
Msa0509500 AT2G37900.2 42.995 207 116 2 67 273 2 206 4.32e-55 186
Msa0509500 AT2G26690.1 40.351 285 162 4 1 278 1 284 1.78e-54 186
Msa0509500 AT5G46050.2 47.619 189 94 2 110 294 1 188 2.51e-53 181
Msa0509500 AT4G21680.1 33.106 293 189 3 5 294 9 297 7.80e-52 179
Msa0509500 AT1G72130.1 43.933 239 125 2 25 261 26 257 1.18e-51 177
Msa0509500 AT1G32450.1 32.753 287 174 4 5 288 18 288 1.40e-51 179
Msa0509500 AT3G21670.1 36.940 268 162 2 14 275 19 285 2.42e-50 175
Msa0509500 AT1G52190.1 35.294 272 159 4 2 267 9 269 4.69e-49 172
Msa0509500 AT1G18880.1 36.255 251 154 4 28 274 23 271 1.35e-48 170
Msa0509500 AT1G59740.1 31.650 297 198 2 2 294 19 314 2.52e-48 170
Msa0509500 AT5G28470.1 36.800 250 154 3 21 267 14 262 1.23e-46 164
Msa0509500 AT5G28470.2 36.800 250 154 3 21 267 14 262 1.24e-46 165
Msa0509500 AT1G69870.1 35.060 251 158 2 21 267 48 297 2.58e-45 162
Msa0509500 AT3G16180.1 35.094 265 160 6 33 292 32 289 4.95e-44 158
Msa0509500 AT5G19640.1 31.599 269 176 4 25 290 60 323 6.60e-44 158
Msa0509500 AT1G69850.1 30.872 298 187 5 1 287 1 290 8.08e-44 157
Msa0509500 AT2G26690.2 40.000 250 142 4 36 278 3 251 1.07e-43 156
Msa0509500 AT1G69860.1 33.725 255 162 4 28 277 22 274 4.48e-42 152
Msa0509500 AT3G25260.1 35.081 248 153 3 14 261 11 250 9.61e-42 150
Msa0509500 AT1G33440.1 35.000 280 169 4 1 273 15 288 1.90e-41 151
Msa0509500 AT5G62680.1 31.227 269 170 3 4 268 33 290 2.95e-41 150
Msa0509500 AT3G45690.1 33.071 254 161 5 23 273 17 264 8.30e-41 148
Msa0509500 AT2G26690.3 40.167 239 135 4 47 278 2 239 1.16e-40 148
Msa0509500 AT3G47960.1 35.391 243 154 3 28 268 65 306 1.52e-40 149
Msa0509500 AT5G14940.1 35.075 268 151 6 24 277 7 265 7.40e-39 143
Msa0509500 AT3G45680.1 31.752 274 176 6 10 280 8 273 1.14e-38 143
Msa0509500 AT1G27040.2 32.117 274 180 4 10 278 9 281 1.01e-37 140
Msa0509500 AT1G27040.1 32.117 274 180 4 10 278 13 285 1.08e-37 140
Msa0509500 AT5G62730.1 31.061 264 165 3 2 261 34 284 1.82e-37 140
Msa0509500 AT3G45650.2 28.253 269 184 4 8 273 6 268 2.18e-36 137
Msa0509500 AT3G25280.1 32.394 284 173 5 5 288 2 266 2.71e-36 136
Msa0509500 AT3G45650.1 28.253 269 184 4 8 273 6 268 3.00e-36 136
Msa0509500 AT3G45700.1 31.008 258 169 5 23 277 15 266 1.15e-35 134
Msa0509500 AT3G01350.1 33.456 272 151 7 26 277 9 270 1.70e-35 134
Msa0509500 AT3G45660.1 31.197 234 152 3 43 273 40 267 3.93e-35 133
Msa0509500 AT3G45660.3 31.197 234 152 3 43 273 40 267 3.93e-35 133
Msa0509500 AT3G45660.2 31.197 234 152 3 43 273 61 288 4.41e-35 133
Msa0509500 AT1G27080.1 32.245 245 160 3 24 264 14 256 7.58e-35 132
Msa0509500 AT3G45710.1 29.304 273 183 6 8 276 4 270 9.40e-35 132
Msa0509500 AT1G27040.3 32.411 253 165 4 31 278 2 253 1.19e-33 129
Msa0509500 AT5G62730.2 31.356 236 145 3 30 261 3 225 7.33e-33 127
Msa0509500 AT3G45720.1 31.535 241 153 6 46 280 41 275 1.40e-32 126
Msa0509500 AT5G11570.1 28.333 240 150 6 16 247 15 240 3.07e-28 113
Msa0509500 AT1G27080.2 31.776 214 140 3 55 264 3 214 2.17e-26 108
Msa0509500 AT1G72130.2 48.413 126 63 1 138 261 14 139 4.75e-25 103
Msa0509500 AT1G72130.3 48.413 126 63 1 138 261 14 139 4.75e-25 103
Msa0509500 AT2G38100.2 25.561 223 148 5 52 273 2 207 3.17e-13 70.1
Msa0509500 AT2G38100.3 25.561 223 148 5 52 273 24 229 5.16e-13 69.3
Msa0509500 AT2G38100.1 25.561 223 148 5 52 273 18 223 5.52e-13 69.3

Find 81 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATATTTAATATCTTTAA+TGG 0.162276 3_4:+57937144 Msa0509500:exon
AAATGGAACATTGTGTTCTT+AGG 0.167140 3_4:+57938754 Msa0509500:CDS
TCCTCATGAGAAAGAGTTAA+AGG 0.194574 3_4:+57938446 Msa0509500:CDS
TAAAGGCTTCTTTCTTTAAT+TGG 0.203778 3_4:+57938463 Msa0509500:CDS
TGCTGGTTTATTATTGTCTT+TGG 0.212439 3_4:+57938584 Msa0509500:CDS
AGCCTTCCATTTCCCAGTTT+TGG 0.219265 3_4:-57937230 None:intergenic
GCACCAAAAGTTGAGATATT+TGG 0.221917 3_4:-57938402 None:intergenic
TTAAGAACTTGCTATTAATT+TGG 0.226438 3_4:-57939035 None:intergenic
ATTCTTACCTGGGTCGCTTC+TGG 0.236583 3_4:+57937559 Msa0509500:CDS
GTGCCTTAATTGCAACTTTA+GGG 0.240529 3_4:+57938508 Msa0509500:CDS
GTATATATTCAAGAGAATTT+AGG 0.251074 3_4:+57938534 Msa0509500:CDS
GGTGCCTTAATTGCAACTTT+AGG 0.256324 3_4:+57938507 Msa0509500:CDS
AAGCCCTAAAGTTGCAATTA+AGG 0.273762 3_4:-57938511 None:intergenic
CTAACTTTGTGTCGATAAAT+TGG 0.279561 3_4:-57938627 None:intergenic
CCTGCTGTTCCATCCAAAAC+TGG 0.284363 3_4:+57937217 Msa0509500:CDS
ATCATGGGTATAGTCTTCTT+TGG 0.286104 3_4:-57937170 None:intergenic
AAACCAAATATCTCAACTTT+TGG 0.301836 3_4:+57938399 Msa0509500:CDS
TATCAGTCCTTCTCAAAATA+TGG 0.317499 3_4:+57938974 Msa0509500:three_prime_UTR
TTAGGATGGGGACTTGGATA+TGG 0.322007 3_4:+57938552 Msa0509500:CDS
TTTGAAAGGATGGCCTTCTA+TGG 0.336648 3_4:+57937408 Msa0509500:CDS
GTTTGGATAACACCAATTCT+TGG 0.350998 3_4:+57937522 Msa0509500:CDS
ATTGTGTTCTTAGGGGAAAA+AGG 0.352987 3_4:+57938763 Msa0509500:CDS
CTCATCTCTCATTTATGTCT+TGG 0.355515 3_4:+57937593 Msa0509500:CDS
AATGGAACATTGTGTTCTTA+GGG 0.364466 3_4:+57938755 Msa0509500:CDS
GAGGATTAAAATCATCAAAT+TGG 0.372384 3_4:-57938428 None:intergenic
AGGAATGTTAATACATGGTC+AGG 0.381248 3_4:+57937495 Msa0509500:CDS
AAATTATGAATATTTCAAAA+AGG 0.388702 3_4:+57938933 Msa0509500:three_prime_UTR
CAATTTATCGACACAAAGTT+AGG 0.392936 3_4:+57938628 Msa0509500:CDS
AAGATACTGTTTCATCAGTT+AGG 0.396676 3_4:+57937475 Msa0509500:CDS
ATACATGGTCAGGGTCTGTT+TGG 0.412198 3_4:+57937505 Msa0509500:CDS
TTCCATCCAAAACTGGGAAA+TGG 0.419022 3_4:+57937224 Msa0509500:CDS
GTTTGATGCAACTCCATAGA+AGG 0.419937 3_4:-57937421 None:intergenic
CTTCATGAAGTTGTGTTGTA+AGG 0.420306 3_4:-57937455 None:intergenic
CTATGGAGTTGCATCAAACT+TGG 0.433756 3_4:+57937425 Msa0509500:CDS
GCACTTTACACAATGGCAAT+TGG 0.443556 3_4:+57938363 Msa0509500:CDS
CAAATTCCATTTGTGCATGT+TGG 0.447193 3_4:-57938300 None:intergenic
TGTAGATCTGAAGGGTTACT+AGG 0.449676 3_4:-57938723 None:intergenic
ACACTTGCTTACCTCAAAGT+TGG 0.452079 3_4:-57938801 None:intergenic
TCTATCACACTCCAACTTTG+AGG 0.456422 3_4:+57938790 Msa0509500:CDS
AGGCTTCTTTCTTTAATTGG+TGG 0.457739 3_4:+57938466 Msa0509500:CDS
GAGAATTTAGGATGGGGACT+TGG 0.459132 3_4:+57938546 Msa0509500:CDS
GGATATGGTATTCCTACTGC+TGG 0.460012 3_4:+57938567 Msa0509500:CDS
GCAATGTAAGCACCAAGAAT+TGG 0.467213 3_4:-57937534 None:intergenic
TTACATTGCAGATTCTTACC+TGG 0.476724 3_4:+57937548 Msa0509500:CDS
AGATCTACATGAGTTTCAAA+TGG 0.478491 3_4:+57938737 Msa0509500:CDS
ACTCTATTAAACTGTCAAGT+TGG 0.484602 3_4:-57939081 None:intergenic
TACACAATGGCAATTGGTGC+AGG 0.489428 3_4:+57938369 Msa0509500:CDS
TTTGTAAGACATTCTCAAAC+CGG 0.491815 3_4:+57938904 Msa0509500:three_prime_UTR
TTGAAACCAACATGCACAAA+TGG 0.494777 3_4:+57938294 Msa0509500:CDS
TACATTGCAGATTCTTACCT+GGG 0.494969 3_4:+57937549 Msa0509500:CDS
ATATTCATAATTTCATAGAC+CGG 0.495351 3_4:-57938923 None:intergenic
GGAAATCAACAGTTCCATCA+TGG 0.497099 3_4:-57937186 None:intergenic
TGAAACTCATGTAGATCTGA+AGG 0.512547 3_4:-57938732 None:intergenic
GGGACTAAATTGATAGAAGA+TGG 0.512914 3_4:+57938999 Msa0509500:three_prime_UTR
GCCTTTAACTCTTTCTCATG+AGG 0.529898 3_4:-57938447 None:intergenic
AAAGAAGACTATACCCATGA+TGG 0.538056 3_4:+57937172 Msa0509500:CDS
GACATCTAAAAGTCCTGCTA+AGG 0.544118 3_4:+57938650 Msa0509500:CDS
AGTCCTTCTCAAAATATGGT+AGG 0.544348 3_4:+57938978 Msa0509500:three_prime_UTR
ACACGAATTATATCCTTAGC+AGG 0.545832 3_4:-57938663 None:intergenic
GTCCTTCTCAAAATATGGTA+GGG 0.548387 3_4:+57938979 Msa0509500:three_prime_UTR
GAAATCAACAGTTCCATCAT+GGG 0.552746 3_4:-57937185 None:intergenic
TATTCAAGAGAATTTAGGAT+GGG 0.557111 3_4:+57938539 Msa0509500:CDS
CTGCTGTTCCATCCAAAACT+GGG 0.558606 3_4:+57937218 Msa0509500:CDS
CAGTTAGGAATGTTAATACA+TGG 0.561918 3_4:+57937490 Msa0509500:CDS
GTATGAAGCATTTGAAAGGA+TGG 0.563974 3_4:+57937398 Msa0509500:CDS
CAGGGTATGAAGCATTTGAA+AGG 0.571557 3_4:+57937394 Msa0509500:intron
TGAAAGTCCAGAAGCGACCC+AGG 0.586084 3_4:-57937566 None:intergenic
GATGGAACTGTTGATTTCCA+CGG 0.587530 3_4:+57937190 Msa0509500:CDS
ATGGAACAGCAGGTTTGCCG+TGG 0.589059 3_4:-57937207 None:intergenic
GACATAAATGAGAGATGAGA+GGG 0.589839 3_4:-57937589 None:intergenic
GACAATAATAAACCAGCAGT+AGG 0.594102 3_4:-57938579 None:intergenic
ACAATGGCAATTGGTGCAGG+TGG 0.594161 3_4:+57938372 Msa0509500:CDS
ATATTCAAGAGAATTTAGGA+TGG 0.594332 3_4:+57938538 Msa0509500:CDS
GAAACTCATGTAGATCTGAA+GGG 0.608617 3_4:-57938731 None:intergenic
ATTCAAGAGAATTTAGGATG+GGG 0.609796 3_4:+57938540 Msa0509500:CDS
ATCCAAAACTGGGAAATGGA+AGG 0.616857 3_4:+57937228 Msa0509500:CDS
CACAAATGGAATTTGCAACA+AGG 0.617097 3_4:+57938308 Msa0509500:CDS
ATGGAACATTGTGTTCTTAG+GGG 0.621544 3_4:+57938756 Msa0509500:CDS
CTACACAGCACTTTACACAA+TGG 0.627388 3_4:+57938356 Msa0509500:CDS
AGACATAAATGAGAGATGAG+AGG 0.629204 3_4:-57937590 None:intergenic
GGAATGTTAATACATGGTCA+GGG 0.669674 3_4:+57937496 Msa0509500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATTTAATATCTTTAA+TGG + chr3_4:57937144-57937163 Msa0509500:exon 10.0%
!! AATTAATTGTTTATATTATG+GGG + chr3_4:57937323-57937342 Msa0509500:intron 10.0%
!! TTACTTATATATATTAATTC+AGG + chr3_4:57937375-57937394 Msa0509500:intron 10.0%
!! TACTTATATATATTAATTCA+GGG + chr3_4:57937376-57937395 Msa0509500:intron 10.0%
!! AAATTATGAATATTTCAAAA+AGG + chr3_4:57938933-57938952 Msa0509500:three_prime_UTR 10.0%
!! TGTATATTTAATATCTTTAA+TGG + chr3_4:57937144-57937163 Msa0509500:exon 10.0%
!! AATTAATTGTTTATATTATG+GGG + chr3_4:57937323-57937342 Msa0509500:intron 10.0%
!! TTACTTATATATATTAATTC+AGG + chr3_4:57937375-57937394 Msa0509500:intron 10.0%
!! TACTTATATATATTAATTCA+GGG + chr3_4:57937376-57937395 Msa0509500:intron 10.0%
!! AAATTATGAATATTTCAAAA+AGG + chr3_4:57938933-57938952 Msa0509500:three_prime_UTR 10.0%
!! AAAGACAAAAATAAAGTATA+AGG - chr3_4:57937121-57937140 None:intergenic 15.0%
!! ATATATAAGTAAAAACCTAT+AGG - chr3_4:57937367-57937386 None:intergenic 15.0%
!!! ATTAGATTTGAGTTAATATT+AGG - chr3_4:57937626-57937645 None:intergenic 15.0%
!! TGAAGTTATAACTTTATAAT+CGG - chr3_4:57937652-57937671 None:intergenic 15.0%
!! ATTAATAATTCATGTTAACA+AGG - chr3_4:57937709-57937728 None:intergenic 15.0%
!! AAAGACAAAAATAAAGTATA+AGG - chr3_4:57937121-57937140 None:intergenic 15.0%
!! ATATATAAGTAAAAACCTAT+AGG - chr3_4:57937367-57937386 None:intergenic 15.0%
!!! ATTAGATTTGAGTTAATATT+AGG - chr3_4:57937626-57937645 None:intergenic 15.0%
!! TGAAGTTATAACTTTATAAT+CGG - chr3_4:57937652-57937671 None:intergenic 15.0%
!! ATTAATAATTCATGTTAACA+AGG - chr3_4:57937709-57937728 None:intergenic 15.0%
!! GCTATATATCATAAATAAGT+TGG - chr3_4:57938044-57938063 None:intergenic 20.0%
!! GTATATATTCAAGAGAATTT+AGG + chr3_4:57938534-57938553 Msa0509500:CDS 20.0%
!!! TCTTTGGTTATTTTCTATAT+TGG + chr3_4:57938600-57938619 Msa0509500:CDS 20.0%
!!! CTTTGGTTATTTTCTATATT+GGG + chr3_4:57938601-57938620 Msa0509500:CDS 20.0%
!! AGTGAAAAAAAAAAGACTTT+GGG - chr3_4:57938851-57938870 None:intergenic 20.0%
!! AAGTGAAAAAAAAAAGACTT+TGG - chr3_4:57938852-57938871 None:intergenic 20.0%
!! ATATTCATAATTTCATAGAC+CGG - chr3_4:57938926-57938945 None:intergenic 20.0%
!!! TTAAGAACTTGCTATTAATT+TGG - chr3_4:57939038-57939057 None:intergenic 20.0%
!! GCTATATATCATAAATAAGT+TGG - chr3_4:57938044-57938063 None:intergenic 20.0%
!! GTATATATTCAAGAGAATTT+AGG + chr3_4:57938534-57938553 Msa0509500:CDS 20.0%
!!! TCTTTGGTTATTTTCTATAT+TGG + chr3_4:57938600-57938619 Msa0509500:CDS 20.0%
!!! CTTTGGTTATTTTCTATATT+GGG + chr3_4:57938601-57938620 Msa0509500:CDS 20.0%
!! AGTGAAAAAAAAAAGACTTT+GGG - chr3_4:57938851-57938870 None:intergenic 20.0%
!! AAGTGAAAAAAAAAAGACTT+TGG - chr3_4:57938852-57938871 None:intergenic 20.0%
!! ATATTCATAATTTCATAGAC+CGG - chr3_4:57938926-57938945 None:intergenic 20.0%
!!! TTAAGAACTTGCTATTAATT+TGG - chr3_4:57939038-57939057 None:intergenic 20.0%
! TATATATAGCATGATCCTAT+AGG + chr3_4:57937349-57937368 Msa0509500:intron 25.0%
!! AAGCATAGCAATTTAAAACA+AGG - chr3_4:57937930-57937949 None:intergenic 25.0%
!!! CATTTTTTTCCATCAATTCA+AGG - chr3_4:57938089-57938108 None:intergenic 25.0%
!! AAACCAAATATCTCAACTTT+TGG + chr3_4:57938399-57938418 Msa0509500:CDS 25.0%
! GAGGATTAAAATCATCAAAT+TGG - chr3_4:57938431-57938450 None:intergenic 25.0%
! TAAAGGCTTCTTTCTTTAAT+TGG + chr3_4:57938463-57938482 Msa0509500:CDS 25.0%
! ATATTCAAGAGAATTTAGGA+TGG + chr3_4:57938538-57938557 Msa0509500:CDS 25.0%
!! TATTCAAGAGAATTTAGGAT+GGG + chr3_4:57938539-57938558 Msa0509500:CDS 25.0%
!! TTGAAGTTTTCTATTCTTGA+AGG - chr3_4:57938700-57938719 None:intergenic 25.0%
!!! TTTTTTTTTCACTTTGCATG+AGG + chr3_4:57938858-57938877 Msa0509500:three_prime_UTR 25.0%
! ATGAATATTTCAAAAAGGTC+TGG + chr3_4:57938938-57938957 Msa0509500:three_prime_UTR 25.0%
! TATATATAGCATGATCCTAT+AGG + chr3_4:57937349-57937368 Msa0509500:intron 25.0%
!! AAGCATAGCAATTTAAAACA+AGG - chr3_4:57937930-57937949 None:intergenic 25.0%
!!! CATTTTTTTCCATCAATTCA+AGG - chr3_4:57938089-57938108 None:intergenic 25.0%
!! AAACCAAATATCTCAACTTT+TGG + chr3_4:57938399-57938418 Msa0509500:CDS 25.0%
! GAGGATTAAAATCATCAAAT+TGG - chr3_4:57938431-57938450 None:intergenic 25.0%
! TAAAGGCTTCTTTCTTTAAT+TGG + chr3_4:57938463-57938482 Msa0509500:CDS 25.0%
! ATATTCAAGAGAATTTAGGA+TGG + chr3_4:57938538-57938557 Msa0509500:CDS 25.0%
!! TATTCAAGAGAATTTAGGAT+GGG + chr3_4:57938539-57938558 Msa0509500:CDS 25.0%
!! TTGAAGTTTTCTATTCTTGA+AGG - chr3_4:57938700-57938719 None:intergenic 25.0%
!!! TTTTTTTTTCACTTTGCATG+AGG + chr3_4:57938858-57938877 Msa0509500:three_prime_UTR 25.0%
! ATGAATATTTCAAAAAGGTC+TGG + chr3_4:57938938-57938957 Msa0509500:three_prime_UTR 25.0%
AAGATACTGTTTCATCAGTT+AGG + chr3_4:57937475-57937494 Msa0509500:CDS 30.0%
CAGTTAGGAATGTTAATACA+TGG + chr3_4:57937490-57937509 Msa0509500:CDS 30.0%
TAACTTCATAACCACTTGTT+TGG + chr3_4:57937664-57937683 Msa0509500:intron 30.0%
TTGGACCATAAGACAATTAA+AGG + chr3_4:57937683-57937702 Msa0509500:intron 30.0%
AAATTGCTATGCTTACCAAT+TGG + chr3_4:57937936-57937955 Msa0509500:intron 30.0%
! TTTTTCCATCAATTCAAGGT+GGG - chr3_4:57938085-57938104 None:intergenic 30.0%
!!! TTTTTTCCATCAATTCAAGG+TGG - chr3_4:57938086-57938105 None:intergenic 30.0%
ACTCTTATGAATGATCACTT+TGG + chr3_4:57938113-57938132 Msa0509500:intron 30.0%
!! TGGATGTTTACCTCATTTTT+AGG + chr3_4:57938486-57938505 Msa0509500:CDS 30.0%
! AATTAAGGCACCTAAAAATG+AGG - chr3_4:57938499-57938518 None:intergenic 30.0%
! ATTCAAGAGAATTTAGGATG+GGG + chr3_4:57938540-57938559 Msa0509500:CDS 30.0%
!! TGCTGGTTTATTATTGTCTT+TGG + chr3_4:57938584-57938603 Msa0509500:CDS 30.0%
! CTAACTTTGTGTCGATAAAT+TGG - chr3_4:57938630-57938649 None:intergenic 30.0%
CAATTTATCGACACAAAGTT+AGG + chr3_4:57938628-57938647 Msa0509500:CDS 30.0%
AGATCTACATGAGTTTCAAA+TGG + chr3_4:57938737-57938756 Msa0509500:CDS 30.0%
AAATGGAACATTGTGTTCTT+AGG + chr3_4:57938754-57938773 Msa0509500:CDS 30.0%
AATGGAACATTGTGTTCTTA+GGG + chr3_4:57938755-57938774 Msa0509500:CDS 30.0%
TTTGTAAGACATTCTCAAAC+CGG + chr3_4:57938904-57938923 Msa0509500:three_prime_UTR 30.0%
TATCAGTCCTTCTCAAAATA+TGG + chr3_4:57938974-57938993 Msa0509500:three_prime_UTR 30.0%
ACTCTATTAAACTGTCAAGT+TGG - chr3_4:57939084-57939103 None:intergenic 30.0%
AAGATACTGTTTCATCAGTT+AGG + chr3_4:57937475-57937494 Msa0509500:CDS 30.0%
CAGTTAGGAATGTTAATACA+TGG + chr3_4:57937490-57937509 Msa0509500:CDS 30.0%
TAACTTCATAACCACTTGTT+TGG + chr3_4:57937664-57937683 Msa0509500:intron 30.0%
TTGGACCATAAGACAATTAA+AGG + chr3_4:57937683-57937702 Msa0509500:intron 30.0%
AAATTGCTATGCTTACCAAT+TGG + chr3_4:57937936-57937955 Msa0509500:intron 30.0%
! TTTTTCCATCAATTCAAGGT+GGG - chr3_4:57938085-57938104 None:intergenic 30.0%
!!! TTTTTTCCATCAATTCAAGG+TGG - chr3_4:57938086-57938105 None:intergenic 30.0%
ACTCTTATGAATGATCACTT+TGG + chr3_4:57938113-57938132 Msa0509500:intron 30.0%
!! TGGATGTTTACCTCATTTTT+AGG + chr3_4:57938486-57938505 Msa0509500:CDS 30.0%
! AATTAAGGCACCTAAAAATG+AGG - chr3_4:57938499-57938518 None:intergenic 30.0%
! ATTCAAGAGAATTTAGGATG+GGG + chr3_4:57938540-57938559 Msa0509500:CDS 30.0%
!! TGCTGGTTTATTATTGTCTT+TGG + chr3_4:57938584-57938603 Msa0509500:CDS 30.0%
! CTAACTTTGTGTCGATAAAT+TGG - chr3_4:57938630-57938649 None:intergenic 30.0%
CAATTTATCGACACAAAGTT+AGG + chr3_4:57938628-57938647 Msa0509500:CDS 30.0%
AGATCTACATGAGTTTCAAA+TGG + chr3_4:57938737-57938756 Msa0509500:CDS 30.0%
AAATGGAACATTGTGTTCTT+AGG + chr3_4:57938754-57938773 Msa0509500:CDS 30.0%
AATGGAACATTGTGTTCTTA+GGG + chr3_4:57938755-57938774 Msa0509500:CDS 30.0%
TTTGTAAGACATTCTCAAAC+CGG + chr3_4:57938904-57938923 Msa0509500:three_prime_UTR 30.0%
TATCAGTCCTTCTCAAAATA+TGG + chr3_4:57938974-57938993 Msa0509500:three_prime_UTR 30.0%
ACTCTATTAAACTGTCAAGT+TGG - chr3_4:57939084-57939103 None:intergenic 30.0%
ATCATGGGTATAGTCTTCTT+TGG - chr3_4:57937173-57937192 None:intergenic 35.0%
AAAGAAGACTATACCCATGA+TGG + chr3_4:57937172-57937191 Msa0509500:CDS 35.0%
GAAATCAACAGTTCCATCAT+GGG - chr3_4:57937188-57937207 None:intergenic 35.0%
! GTATGAAGCATTTGAAAGGA+TGG + chr3_4:57937398-57937417 Msa0509500:CDS 35.0%
CTTCATGAAGTTGTGTTGTA+AGG - chr3_4:57937458-57937477 None:intergenic 35.0%
AGGAATGTTAATACATGGTC+AGG + chr3_4:57937495-57937514 Msa0509500:CDS 35.0%
GGAATGTTAATACATGGTCA+GGG + chr3_4:57937496-57937515 Msa0509500:CDS 35.0%
GTTTGGATAACACCAATTCT+TGG + chr3_4:57937522-57937541 Msa0509500:CDS 35.0%
TTACATTGCAGATTCTTACC+TGG + chr3_4:57937548-57937567 Msa0509500:CDS 35.0%
TACATTGCAGATTCTTACCT+GGG + chr3_4:57937549-57937568 Msa0509500:CDS 35.0%
GACATAAATGAGAGATGAGA+GGG - chr3_4:57937592-57937611 None:intergenic 35.0%
AGACATAAATGAGAGATGAG+AGG - chr3_4:57937593-57937612 None:intergenic 35.0%
CTCATCTCTCATTTATGTCT+TGG + chr3_4:57937593-57937612 Msa0509500:CDS 35.0%
CAAGGCCTTTAATTGTCTTA+TGG - chr3_4:57937691-57937710 None:intergenic 35.0%
TTAACGCTGCTATGTTCTTA+AGG - chr3_4:57937763-57937782 None:intergenic 35.0%
CAAGACGAGTAAAACCATAA+TGG - chr3_4:57937810-57937829 None:intergenic 35.0%
!! CTTTGGTTACCTCATTTTTG+TGG + chr3_4:57938130-57938149 Msa0509500:intron 35.0%
TTGAAACCAACATGCACAAA+TGG + chr3_4:57938294-57938313 Msa0509500:CDS 35.0%
CAAATTCCATTTGTGCATGT+TGG - chr3_4:57938303-57938322 None:intergenic 35.0%
CACAAATGGAATTTGCAACA+AGG + chr3_4:57938308-57938327 Msa0509500:CDS 35.0%
GCACCAAAAGTTGAGATATT+TGG - chr3_4:57938405-57938424 None:intergenic 35.0%
TCCTCATGAGAAAGAGTTAA+AGG + chr3_4:57938446-57938465 Msa0509500:CDS 35.0%
AGGCTTCTTTCTTTAATTGG+TGG + chr3_4:57938466-57938485 Msa0509500:CDS 35.0%
GTGCCTTAATTGCAACTTTA+GGG + chr3_4:57938508-57938527 Msa0509500:CDS 35.0%
AAGCCCTAAAGTTGCAATTA+AGG - chr3_4:57938514-57938533 None:intergenic 35.0%
GACAATAATAAACCAGCAGT+AGG - chr3_4:57938582-57938601 None:intergenic 35.0%
ACACGAATTATATCCTTAGC+AGG - chr3_4:57938666-57938685 None:intergenic 35.0%
GAAACTCATGTAGATCTGAA+GGG - chr3_4:57938734-57938753 None:intergenic 35.0%
TGAAACTCATGTAGATCTGA+AGG - chr3_4:57938735-57938754 None:intergenic 35.0%
ATGGAACATTGTGTTCTTAG+GGG + chr3_4:57938756-57938775 Msa0509500:CDS 35.0%
ATTGTGTTCTTAGGGGAAAA+AGG + chr3_4:57938763-57938782 Msa0509500:CDS 35.0%
AGTCCTTCTCAAAATATGGT+AGG + chr3_4:57938978-57938997 Msa0509500:three_prime_UTR 35.0%
GTCCTTCTCAAAATATGGTA+GGG + chr3_4:57938979-57938998 Msa0509500:three_prime_UTR 35.0%
GGGACTAAATTGATAGAAGA+TGG + chr3_4:57938999-57939018 Msa0509500:three_prime_UTR 35.0%
ATCATGGGTATAGTCTTCTT+TGG - chr3_4:57937173-57937192 None:intergenic 35.0%
AAAGAAGACTATACCCATGA+TGG + chr3_4:57937172-57937191 Msa0509500:CDS 35.0%
GAAATCAACAGTTCCATCAT+GGG - chr3_4:57937188-57937207 None:intergenic 35.0%
! GTATGAAGCATTTGAAAGGA+TGG + chr3_4:57937398-57937417 Msa0509500:CDS 35.0%
CTTCATGAAGTTGTGTTGTA+AGG - chr3_4:57937458-57937477 None:intergenic 35.0%
AGGAATGTTAATACATGGTC+AGG + chr3_4:57937495-57937514 Msa0509500:CDS 35.0%
GGAATGTTAATACATGGTCA+GGG + chr3_4:57937496-57937515 Msa0509500:CDS 35.0%
GTTTGGATAACACCAATTCT+TGG + chr3_4:57937522-57937541 Msa0509500:CDS 35.0%
TTACATTGCAGATTCTTACC+TGG + chr3_4:57937548-57937567 Msa0509500:CDS 35.0%
TACATTGCAGATTCTTACCT+GGG + chr3_4:57937549-57937568 Msa0509500:CDS 35.0%
GACATAAATGAGAGATGAGA+GGG - chr3_4:57937592-57937611 None:intergenic 35.0%
AGACATAAATGAGAGATGAG+AGG - chr3_4:57937593-57937612 None:intergenic 35.0%
CTCATCTCTCATTTATGTCT+TGG + chr3_4:57937593-57937612 Msa0509500:CDS 35.0%
CAAGGCCTTTAATTGTCTTA+TGG - chr3_4:57937691-57937710 None:intergenic 35.0%
TTAACGCTGCTATGTTCTTA+AGG - chr3_4:57937763-57937782 None:intergenic 35.0%
CAAGACGAGTAAAACCATAA+TGG - chr3_4:57937810-57937829 None:intergenic 35.0%
!! CTTTGGTTACCTCATTTTTG+TGG + chr3_4:57938130-57938149 Msa0509500:intron 35.0%
TTGAAACCAACATGCACAAA+TGG + chr3_4:57938294-57938313 Msa0509500:CDS 35.0%
CAAATTCCATTTGTGCATGT+TGG - chr3_4:57938303-57938322 None:intergenic 35.0%
CACAAATGGAATTTGCAACA+AGG + chr3_4:57938308-57938327 Msa0509500:CDS 35.0%
GCACCAAAAGTTGAGATATT+TGG - chr3_4:57938405-57938424 None:intergenic 35.0%
TCCTCATGAGAAAGAGTTAA+AGG + chr3_4:57938446-57938465 Msa0509500:CDS 35.0%
AGGCTTCTTTCTTTAATTGG+TGG + chr3_4:57938466-57938485 Msa0509500:CDS 35.0%
GTGCCTTAATTGCAACTTTA+GGG + chr3_4:57938508-57938527 Msa0509500:CDS 35.0%
AAGCCCTAAAGTTGCAATTA+AGG - chr3_4:57938514-57938533 None:intergenic 35.0%
GACAATAATAAACCAGCAGT+AGG - chr3_4:57938582-57938601 None:intergenic 35.0%
ACACGAATTATATCCTTAGC+AGG - chr3_4:57938666-57938685 None:intergenic 35.0%
GAAACTCATGTAGATCTGAA+GGG - chr3_4:57938734-57938753 None:intergenic 35.0%
TGAAACTCATGTAGATCTGA+AGG - chr3_4:57938735-57938754 None:intergenic 35.0%
ATGGAACATTGTGTTCTTAG+GGG + chr3_4:57938756-57938775 Msa0509500:CDS 35.0%
ATTGTGTTCTTAGGGGAAAA+AGG + chr3_4:57938763-57938782 Msa0509500:CDS 35.0%
AGTCCTTCTCAAAATATGGT+AGG + chr3_4:57938978-57938997 Msa0509500:three_prime_UTR 35.0%
GTCCTTCTCAAAATATGGTA+GGG + chr3_4:57938979-57938998 Msa0509500:three_prime_UTR 35.0%
GGGACTAAATTGATAGAAGA+TGG + chr3_4:57938999-57939018 Msa0509500:three_prime_UTR 35.0%
GGAAATCAACAGTTCCATCA+TGG - chr3_4:57937189-57937208 None:intergenic 40.0%
!! GATGGAACTGTTGATTTCCA+CGG + chr3_4:57937190-57937209 Msa0509500:CDS 40.0%
TTCCATCCAAAACTGGGAAA+TGG + chr3_4:57937224-57937243 Msa0509500:CDS 40.0%
!!! TTCCATTTCCCAGTTTTGGA+TGG - chr3_4:57937229-57937248 None:intergenic 40.0%
ATCCAAAACTGGGAAATGGA+AGG + chr3_4:57937228-57937247 Msa0509500:CDS 40.0%
! AAGGCTTGTGCTTTTCTTGT+TGG + chr3_4:57937247-57937266 Msa0509500:CDS 40.0%
! CAGGGTATGAAGCATTTGAA+AGG + chr3_4:57937394-57937413 Msa0509500:intron 40.0%
TTTGAAAGGATGGCCTTCTA+TGG + chr3_4:57937408-57937427 Msa0509500:CDS 40.0%
GTTTGATGCAACTCCATAGA+AGG - chr3_4:57937424-57937443 None:intergenic 40.0%
CTATGGAGTTGCATCAAACT+TGG + chr3_4:57937425-57937444 Msa0509500:CDS 40.0%
GCAATGTAAGCACCAAGAAT+TGG - chr3_4:57937537-57937556 None:intergenic 40.0%
TGTCTTATGGTCCAAACAAG+TGG - chr3_4:57937678-57937697 None:intergenic 40.0%
GTAGAGTTTGCGTTCCATTA+TGG + chr3_4:57937793-57937812 Msa0509500:intron 40.0%
GTGGACAAATTAGCTCCAAT+TGG - chr3_4:57937954-57937973 None:intergenic 40.0%
TTGTCCACAAATTGCACTCA+TGG + chr3_4:57937966-57937985 Msa0509500:intron 40.0%
TGTCCACAAATTGCACTCAT+GGG + chr3_4:57937967-57937986 Msa0509500:intron 40.0%
TATCCCATGAGTGCAATTTG+TGG - chr3_4:57937973-57937992 None:intergenic 40.0%
TTTGTCCCACCTTGAATTGA+TGG + chr3_4:57938077-57938096 Msa0509500:intron 40.0%
ATCACTGTGCCACAAAAATG+AGG - chr3_4:57938142-57938161 None:intergenic 40.0%
TTAATTCCTCTACACGTCAC+AGG + chr3_4:57938233-57938252 Msa0509500:intron 40.0%
TAATTCCTCTACACGTCACA+GGG + chr3_4:57938234-57938253 Msa0509500:intron 40.0%
CTACACAGCACTTTACACAA+TGG + chr3_4:57938356-57938375 Msa0509500:CDS 40.0%
GCACTTTACACAATGGCAAT+TGG + chr3_4:57938363-57938382 Msa0509500:CDS 40.0%
GCCTTTAACTCTTTCTCATG+AGG - chr3_4:57938450-57938469 None:intergenic 40.0%
GGTGCCTTAATTGCAACTTT+AGG + chr3_4:57938507-57938526 Msa0509500:CDS 40.0%
GACATCTAAAAGTCCTGCTA+AGG + chr3_4:57938650-57938669 Msa0509500:CDS 40.0%
TGTAGATCTGAAGGGTTACT+AGG - chr3_4:57938726-57938745 None:intergenic 40.0%
TCTATCACACTCCAACTTTG+AGG + chr3_4:57938790-57938809 Msa0509500:CDS 40.0%
ACACTTGCTTACCTCAAAGT+TGG - chr3_4:57938804-57938823 None:intergenic 40.0%
!! GTCCCTACCATATTTTGAGA+AGG - chr3_4:57938984-57939003 None:intergenic 40.0%
GGAAATCAACAGTTCCATCA+TGG - chr3_4:57937189-57937208 None:intergenic 40.0%
!! GATGGAACTGTTGATTTCCA+CGG + chr3_4:57937190-57937209 Msa0509500:CDS 40.0%
TTCCATCCAAAACTGGGAAA+TGG + chr3_4:57937224-57937243 Msa0509500:CDS 40.0%
!!! TTCCATTTCCCAGTTTTGGA+TGG - chr3_4:57937229-57937248 None:intergenic 40.0%
ATCCAAAACTGGGAAATGGA+AGG + chr3_4:57937228-57937247 Msa0509500:CDS 40.0%
! AAGGCTTGTGCTTTTCTTGT+TGG + chr3_4:57937247-57937266 Msa0509500:CDS 40.0%
! CAGGGTATGAAGCATTTGAA+AGG + chr3_4:57937394-57937413 Msa0509500:intron 40.0%
TTTGAAAGGATGGCCTTCTA+TGG + chr3_4:57937408-57937427 Msa0509500:CDS 40.0%
GTTTGATGCAACTCCATAGA+AGG - chr3_4:57937424-57937443 None:intergenic 40.0%
CTATGGAGTTGCATCAAACT+TGG + chr3_4:57937425-57937444 Msa0509500:CDS 40.0%
GCAATGTAAGCACCAAGAAT+TGG - chr3_4:57937537-57937556 None:intergenic 40.0%
TGTCTTATGGTCCAAACAAG+TGG - chr3_4:57937678-57937697 None:intergenic 40.0%
GTAGAGTTTGCGTTCCATTA+TGG + chr3_4:57937793-57937812 Msa0509500:intron 40.0%
GTGGACAAATTAGCTCCAAT+TGG - chr3_4:57937954-57937973 None:intergenic 40.0%
TTGTCCACAAATTGCACTCA+TGG + chr3_4:57937966-57937985 Msa0509500:intron 40.0%
TGTCCACAAATTGCACTCAT+GGG + chr3_4:57937967-57937986 Msa0509500:intron 40.0%
TATCCCATGAGTGCAATTTG+TGG - chr3_4:57937973-57937992 None:intergenic 40.0%
TTTGTCCCACCTTGAATTGA+TGG + chr3_4:57938077-57938096 Msa0509500:intron 40.0%
ATCACTGTGCCACAAAAATG+AGG - chr3_4:57938142-57938161 None:intergenic 40.0%
TTAATTCCTCTACACGTCAC+AGG + chr3_4:57938233-57938252 Msa0509500:intron 40.0%
TAATTCCTCTACACGTCACA+GGG + chr3_4:57938234-57938253 Msa0509500:intron 40.0%
CTACACAGCACTTTACACAA+TGG + chr3_4:57938356-57938375 Msa0509500:CDS 40.0%
GCACTTTACACAATGGCAAT+TGG + chr3_4:57938363-57938382 Msa0509500:CDS 40.0%
GCCTTTAACTCTTTCTCATG+AGG - chr3_4:57938450-57938469 None:intergenic 40.0%
GGTGCCTTAATTGCAACTTT+AGG + chr3_4:57938507-57938526 Msa0509500:CDS 40.0%
GACATCTAAAAGTCCTGCTA+AGG + chr3_4:57938650-57938669 Msa0509500:CDS 40.0%
TGTAGATCTGAAGGGTTACT+AGG - chr3_4:57938726-57938745 None:intergenic 40.0%
TCTATCACACTCCAACTTTG+AGG + chr3_4:57938790-57938809 Msa0509500:CDS 40.0%
ACACTTGCTTACCTCAAAGT+TGG - chr3_4:57938804-57938823 None:intergenic 40.0%
!! GTCCCTACCATATTTTGAGA+AGG - chr3_4:57938984-57939003 None:intergenic 40.0%
CTGCTGTTCCATCCAAAACT+GGG + chr3_4:57937218-57937237 Msa0509500:CDS 45.0%
! AGCCTTCCATTTCCCAGTTT+TGG - chr3_4:57937233-57937252 None:intergenic 45.0%
ATACATGGTCAGGGTCTGTT+TGG + chr3_4:57937505-57937524 Msa0509500:CDS 45.0%
TACACAATGGCAATTGGTGC+AGG + chr3_4:57938369-57938388 Msa0509500:CDS 45.0%
! GAGAATTTAGGATGGGGACT+TGG + chr3_4:57938546-57938565 Msa0509500:CDS 45.0%
TTAGGATGGGGACTTGGATA+TGG + chr3_4:57938552-57938571 Msa0509500:CDS 45.0%
GGATATGGTATTCCTACTGC+TGG + chr3_4:57938567-57938586 Msa0509500:CDS 45.0%
CTGCTGTTCCATCCAAAACT+GGG + chr3_4:57937218-57937237 Msa0509500:CDS 45.0%
! AGCCTTCCATTTCCCAGTTT+TGG - chr3_4:57937233-57937252 None:intergenic 45.0%
ATACATGGTCAGGGTCTGTT+TGG + chr3_4:57937505-57937524 Msa0509500:CDS 45.0%
TACACAATGGCAATTGGTGC+AGG + chr3_4:57938369-57938388 Msa0509500:CDS 45.0%
! GAGAATTTAGGATGGGGACT+TGG + chr3_4:57938546-57938565 Msa0509500:CDS 45.0%
TTAGGATGGGGACTTGGATA+TGG + chr3_4:57938552-57938571 Msa0509500:CDS 45.0%
GGATATGGTATTCCTACTGC+TGG + chr3_4:57938567-57938586 Msa0509500:CDS 45.0%
!! TTAATTAATTGTTTATATTA+TGG + chr3_4:57937321-57937340 Msa0509500:intron 5.0%
!! TAATTAATTGTTTATATTAT+GGG + chr3_4:57937322-57937341 Msa0509500:intron 5.0%
!! TTAATTAATTGTTTATATTA+TGG + chr3_4:57937321-57937340 Msa0509500:intron 5.0%
!! TAATTAATTGTTTATATTAT+GGG + chr3_4:57937322-57937341 Msa0509500:intron 5.0%
!!! CCAGTTTTGGATGGAACAGC+AGG - chr3_4:57937220-57937239 None:intergenic 50.0%
CCTGCTGTTCCATCCAAAAC+TGG + chr3_4:57937217-57937236 Msa0509500:CDS 50.0%
ATTCTTACCTGGGTCGCTTC+TGG + chr3_4:57937559-57937578 Msa0509500:CDS 50.0%
TCATTCCCTGTGACGTGTAG+AGG - chr3_4:57938242-57938261 None:intergenic 50.0%
ACAATGGCAATTGGTGCAGG+TGG + chr3_4:57938372-57938391 Msa0509500:CDS 50.0%
!!! CCAGTTTTGGATGGAACAGC+AGG - chr3_4:57937220-57937239 None:intergenic 50.0%
CCTGCTGTTCCATCCAAAAC+TGG + chr3_4:57937217-57937236 Msa0509500:CDS 50.0%
ATTCTTACCTGGGTCGCTTC+TGG + chr3_4:57937559-57937578 Msa0509500:CDS 50.0%
TCATTCCCTGTGACGTGTAG+AGG - chr3_4:57938242-57938261 None:intergenic 50.0%
ACAATGGCAATTGGTGCAGG+TGG + chr3_4:57938372-57938391 Msa0509500:CDS 50.0%
ATGGAACAGCAGGTTTGCCG+TGG - chr3_4:57937210-57937229 None:intergenic 55.0%
TGAAAGTCCAGAAGCGACCC+AGG - chr3_4:57937569-57937588 None:intergenic 55.0%
ATGGAACAGCAGGTTTGCCG+TGG - chr3_4:57937210-57937229 None:intergenic 55.0%
TGAAAGTCCAGAAGCGACCC+AGG - chr3_4:57937569-57937588 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 57937091 57939133 57937091 ID=Msa0509500;Name=Msa0509500
chr3_4 mRNA 57937091 57939133 57937091 ID=Msa0509500-mRNA-1;Parent=Msa0509500;Name=Msa0509500-mRNA-1;_AED=0.29;_eAED=0.29;_QI=72|1|1|1|1|1|3|318|294
chr3_4 exon 57937091 57937268 57937091 ID=Msa0509500-mRNA-1:exon:13314;Parent=Msa0509500-mRNA-1
chr3_4 exon 57937397 57937614 57937397 ID=Msa0509500-mRNA-1:exon:13315;Parent=Msa0509500-mRNA-1
chr3_4 exon 57938255 57939133 57938255 ID=Msa0509500-mRNA-1:exon:13316;Parent=Msa0509500-mRNA-1
chr3_4 five_prime_UTR 57937091 57937162 57937091 ID=Msa0509500-mRNA-1:five_prime_utr;Parent=Msa0509500-mRNA-1
chr3_4 CDS 57937163 57937268 57937163 ID=Msa0509500-mRNA-1:cds;Parent=Msa0509500-mRNA-1
chr3_4 CDS 57937397 57937614 57937397 ID=Msa0509500-mRNA-1:cds;Parent=Msa0509500-mRNA-1
chr3_4 CDS 57938255 57938815 57938255 ID=Msa0509500-mRNA-1:cds;Parent=Msa0509500-mRNA-1
chr3_4 three_prime_UTR 57938816 57939133 57938816 ID=Msa0509500-mRNA-1:three_prime_utr;Parent=Msa0509500-mRNA-1
Gene Sequence

>Msa0509500

ATGGAAGCCAAAGAAGACTATACCCATGATGGAACTGTTGATTTCCACGGCAAACCTGCTGTTCCATCCAAAACTGGGAAATGGAAGGCTTGTGCTTTTCTTGTTGGGTATGAAGCATTTGAAAGGATGGCCTTCTATGGAGTTGCATCAAACTTGGTGAATTACCTTACAACACAACTTCATGAAGATACTGTTTCATCAGTTAGGAATGTTAATACATGGTCAGGGTCTGTTTGGATAACACCAATTCTTGGTGCTTACATTGCAGATTCTTACCTGGGTCGCTTCTGGACTTTCACCCTCTCATCTCTCATTTATGTCTTGGGAATGACACTTCTTACTATAGCTGTATCACTCAAGAGCTTGAAACCAACATGCACAAATGGAATTTGCAACAAGGCTTCAACATCACAAATTACATTTTTCTACACAGCACTTTACACAATGGCAATTGGTGCAGGTGGAACAAAACCAAATATCTCAACTTTTGGTGCTGACCAATTTGATGATTTTAATCCTCATGAGAAAGAGTTAAAGGCTTCTTTCTTTAATTGGTGGATGTTTACCTCATTTTTAGGTGCCTTAATTGCAACTTTAGGGCTTGTATATATTCAAGAGAATTTAGGATGGGGACTTGGATATGGTATTCCTACTGCTGGTTTATTATTGTCTTTGGTTATTTTCTATATTGGGACACCAATTTATCGACACAAAGTTAGGACATCTAAAAGTCCTGCTAAGGATATAATTCGTGTCTTTATTGTTGCCTTCAAGAATAGAAAACTTCAACTTCCTAGTAACCCTTCAGATCTACATGAGTTTCAAATGGAACATTGTGTTCTTAGGGGAAAAAGGCAAGTCTATCACACTCCAACTTTGAGGTAA

Protein sequence

>Msa0509500

MEAKEDYTHDGTVDFHGKPAVPSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLHEDTVSSVRNVNTWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTIAVSLKSLKPTCTNGICNKASTSQITFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPHEKELKASFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVRTSKSPAKDIIRVFIVAFKNRKLQLPSNPSDLHEFQMEHCVLRGKRQVYHTPTLR*