AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1439060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439060 MtrunA17_Chr8g0384731 91.972 436 10 2 1 412 1 435 0.0 814
Msa1439060 MtrunA17_Chr3g0130741 67.056 428 101 4 24 412 19 445 0.0 574
Msa1439060 MtrunA17_Chr1g0159791 51.444 381 154 6 54 406 37 414 4.94e-128 375
Msa1439060 MtrunA17_Chr4g0010951 45.368 421 167 8 47 407 34 451 6.15e-115 343
Msa1439060 MtrunA17_Chr6g0484731 43.158 380 174 10 59 401 176 550 3.97e-89 280
Msa1439060 MtrunA17_Chr3g0078321 37.306 386 195 14 59 408 45 419 1.33e-75 241
Msa1439060 MtrunA17_Chr4g0010941 47.881 236 92 3 199 405 2 235 1.35e-71 224
Msa1439060 MtrunA17_Chr7g0221681 27.230 426 231 15 39 409 40 441 4.86e-29 118
Msa1439060 MtrunA17_Chr7g0249451 26.914 405 222 15 59 409 54 438 4.48e-28 115
Msa1439060 MtrunA17_Chr4g0053721 27.174 368 219 14 73 404 79 433 2.74e-26 111
Msa1439060 MtrunA17_Chr1g0179751 23.174 397 224 14 73 409 107 482 3.33e-26 110
Msa1439060 MtrunA17_Chr2g0320621 25.130 386 216 15 70 402 73 438 9.68e-26 108
Msa1439060 MtrunA17_Chr5g0401601 25.280 447 264 19 10 404 13 441 1.48e-25 108
Msa1439060 MtrunA17_Chr7g0265331 23.650 389 217 14 70 402 77 441 2.95e-24 104
Msa1439060 MtrunA17_Chr5g0406001 27.226 393 214 17 63 408 106 473 3.29e-24 104
Msa1439060 MtrunA17_Chr4g0027681 24.607 382 216 15 73 402 76 437 7.80e-24 103
Msa1439060 MtrunA17_Chr8g0371371 26.794 418 241 18 37 411 78 473 1.37e-22 99.8
Msa1439060 MtrunA17_Chr1g0189381 25.000 404 232 16 59 409 52 437 1.35e-21 96.7
Msa1439060 MtrunA17_Chr8g0386441 25.127 394 226 15 54 404 65 432 2.23e-21 95.5
Msa1439060 MtrunA17_Chr8g0352671 24.936 393 213 14 60 404 81 439 2.37e-21 95.5
Msa1439060 MtrunA17_Chr5g0425141 24.548 387 231 14 66 411 94 460 8.01e-21 94.4
Msa1439060 MtrunA17_Chr2g0311451 24.332 374 215 14 72 401 86 435 1.46e-19 90.1
Msa1439060 MtrunA17_Chr2g0333991 23.592 373 217 14 72 400 86 434 1.85e-19 89.7
Msa1439060 MtrunA17_Chr3g0124421 24.468 376 208 14 79 404 104 453 1.19e-18 87.8
Msa1439060 MtrunA17_Chr8g0371351 24.760 416 239 16 35 404 65 452 4.29e-18 86.3
Msa1439060 MtrunA17_Chr3g0130931 26.817 399 200 24 59 404 92 451 1.01e-17 84.7
Msa1439060 MtrunA17_Chr8g0352661 25.000 388 222 16 60 404 78 439 1.15e-17 84.7
Msa1439060 MtrunA17_Chr2g0310831 24.872 390 222 18 54 401 80 440 1.39e-17 84.3
Msa1439060 MtrunA17_Chr2g0307991 25.000 376 202 15 75 401 60 404 1.62e-17 84.0
Msa1439060 MtrunA17_Chr5g0419291 25.737 373 204 17 73 401 85 428 5.09e-17 82.4
Msa1439060 MtrunA17_Chr2g0308001 23.568 454 241 20 9 404 6 411 3.79e-15 77.0
Msa1439060 MtrunA17_Chr5g0395911 24.603 378 217 15 68 402 62 414 3.97e-15 76.6
Msa1439060 MtrunA17_Chr2g0310821 24.566 403 233 17 38 402 74 443 4.30e-15 76.6
Msa1439060 MtrunA17_Chr3g0099891 26.341 410 231 22 35 401 73 454 1.94e-14 74.7
Msa1439060 MtrunA17_Chr5g0442921 26.087 391 206 18 73 404 190 556 2.54e-14 74.7
Msa1439060 MtrunA17_Chr1g0165201 25.135 370 209 14 73 401 127 469 3.68e-14 73.9
Msa1439060 MtrunA17_Chr1g0179091 23.035 369 240 12 46 401 29 366 4.41e-14 73.2
Msa1439060 MtrunA17_Chr3g0110191 24.074 378 216 14 77 406 89 443 6.01e-14 73.2
Msa1439060 MtrunA17_Chr3g0087851 23.256 387 213 15 70 404 85 439 1.86e-13 71.6
Msa1439060 MtrunA17_Chr6g0484901 24.932 369 193 18 79 401 161 491 2.37e-13 71.6
Msa1439060 MtrunA17_Chr3g0099901 25.867 375 216 15 67 402 135 486 2.41e-13 71.6
Msa1439060 MtrunA17_Chr5g0434411 22.917 384 217 12 77 406 84 442 2.44e-13 71.2
Msa1439060 MtrunA17_Chr1g0212321 24.202 376 204 15 73 401 145 486 3.91e-13 70.9
Msa1439060 MtrunA17_Chr5g0415951 24.672 381 221 18 61 401 80 434 5.95e-13 70.1
Msa1439060 MtrunA17_Chr4g0023351 32.022 178 87 8 59 209 46 216 1.19e-12 68.2
Msa1439060 MtrunA17_Chr2g0291201 24.211 380 210 17 73 402 101 452 1.21e-12 69.3
Msa1439060 MtrunA17_Chr5g0395931 23.797 374 226 14 68 402 83 436 2.29e-12 68.2
Msa1439060 MtrunA17_Chr6g0486981 22.427 379 217 15 75 404 89 439 2.70e-12 68.2
Msa1439060 MtrunA17_Chr3g0095891 24.130 431 246 20 32 404 54 461 2.81e-12 68.2
Msa1439060 MtrunA17_Chr7g0275731 25.240 416 234 19 32 402 102 485 7.22e-12 67.0
Msa1439060 MtrunA17_Chr8g0390761 23.514 370 207 16 77 402 119 456 2.45e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1439060 AT4G33490.2 58.095 420 137 7 11 404 8 414 8.70e-167 474
Msa1439060 AT4G33490.1 58.163 392 125 7 11 376 5 383 2.34e-151 434
Msa1439060 AT1G44130.1 50.131 381 158 8 55 407 29 405 1.82e-130 381
Msa1439060 AT1G77480.2 47.301 389 177 5 47 408 39 426 2.98e-124 367
Msa1439060 AT1G77480.1 47.150 386 176 5 47 405 39 423 1.52e-122 363
Msa1439060 AT1G49050.1 42.377 387 174 13 59 401 187 568 3.19e-85 271
Msa1439060 AT1G49050.2 41.892 370 170 12 74 401 29 395 1.81e-80 254
Msa1439060 AT1G49050.3 40.293 273 122 9 59 292 187 457 1.46e-51 180
Msa1439060 AT1G65240.1 26.750 400 223 14 59 409 56 434 5.18e-33 129
Msa1439060 AT5G43100.2 28.307 378 210 15 65 404 66 420 2.46e-32 127
Msa1439060 AT5G43100.1 28.307 378 210 15 65 404 66 420 1.05e-31 127
Msa1439060 AT3G02740.1 27.387 398 225 12 59 409 67 447 3.68e-31 124
Msa1439060 AT2G36670.2 25.815 399 225 13 56 402 79 458 4.47e-31 124
Msa1439060 AT1G05840.1 26.154 390 214 12 73 409 78 446 2.03e-29 119
Msa1439060 AT5G22850.1 26.161 409 231 14 48 403 52 442 3.44e-29 119
Msa1439060 AT2G36670.4 25.594 379 213 12 74 402 33 392 4.63e-29 118
Msa1439060 AT2G36670.3 25.594 379 213 12 74 402 33 392 4.63e-29 118
Msa1439060 AT2G36670.1 25.495 404 225 14 56 402 79 463 4.72e-29 119
Msa1439060 AT3G02740.2 26.684 386 221 11 69 409 4 372 4.95e-29 117
Msa1439060 AT5G36260.1 25.666 413 244 12 46 411 47 443 2.68e-28 116
Msa1439060 AT1G08210.4 25.185 405 227 13 52 402 93 475 6.24e-27 113
Msa1439060 AT1G08210.1 25.185 405 227 13 52 402 59 441 6.40e-27 112
Msa1439060 AT1G08210.3 25.185 405 227 13 52 402 107 489 6.52e-27 113
Msa1439060 AT3G50050.1 27.224 371 225 14 65 404 83 439 2.45e-25 108
Msa1439060 AT1G08210.2 25.000 432 221 17 52 402 59 468 1.01e-22 100
Msa1439060 AT3G25700.1 25.455 385 214 16 73 401 82 449 1.88e-21 96.3
Msa1439060 AT2G17760.1 24.505 404 243 14 37 401 69 449 2.65e-21 96.3
Msa1439060 AT5G10080.1 25.946 370 209 12 79 402 104 454 3.04e-21 96.3
Msa1439060 AT3G51330.3 26.260 377 212 17 72 402 98 454 7.93e-20 91.7
Msa1439060 AT3G51350.1 27.200 375 203 17 74 401 101 452 7.94e-20 92.0
Msa1439060 AT4G35880.1 27.105 380 214 17 69 407 100 457 9.25e-20 91.7
Msa1439060 AT3G51330.1 26.330 376 211 17 72 401 98 453 9.92e-20 91.7
Msa1439060 AT2G28010.1 26.110 383 228 18 47 404 42 394 2.07e-19 89.7
Msa1439060 AT2G28030.1 23.200 375 237 15 54 404 43 390 3.20e-17 83.2
Msa1439060 AT3G51340.1 26.121 379 213 16 72 401 99 459 3.50e-16 80.9
Msa1439060 AT2G28040.2 24.870 386 231 17 45 404 32 384 5.29e-16 79.7
Msa1439060 AT2G28040.1 24.870 386 231 17 45 404 41 393 5.80e-16 79.7
Msa1439060 AT3G51340.2 25.606 371 213 14 72 401 99 447 1.01e-15 79.3
Msa1439060 AT2G03200.1 23.798 416 222 20 45 404 85 461 2.02e-15 78.2
Msa1439060 AT1G66180.1 22.572 381 217 14 77 404 74 429 4.01e-15 77.4
Msa1439060 AT1G01300.1 27.005 374 199 17 73 401 140 484 3.11e-14 74.7
Msa1439060 AT3G59080.2 24.359 390 239 15 44 404 137 499 3.22e-14 74.7
Msa1439060 AT4G35880.2 26.648 349 193 17 69 376 100 426 3.55e-14 74.3
Msa1439060 AT3G51330.2 25.641 351 195 17 72 376 98 428 9.71e-14 73.2
Msa1439060 AT3G51360.7 22.164 379 219 16 72 402 2 352 4.58e-13 70.9
Msa1439060 AT3G51360.9 22.951 366 226 14 74 402 100 446 6.27e-13 70.9
Msa1439060 AT3G20015.1 25.135 370 208 16 73 401 129 470 8.14e-13 70.5
Msa1439060 AT3G51360.1 22.951 366 226 14 74 402 90 436 1.05e-12 70.1
Msa1439060 AT3G18490.1 23.925 372 209 19 73 401 160 500 2.67e-12 68.9
Msa1439060 AT2G42980.1 24.742 388 218 14 73 404 158 527 9.07e-12 67.0
Msa1439060 AT3G59080.1 23.389 419 243 15 44 404 137 535 1.04e-11 67.0
Msa1439060 AT3G51340.3 26.820 261 148 9 79 300 107 363 2.11e-11 65.5
Msa1439060 AT3G51340.4 26.523 279 157 11 79 316 107 378 2.30e-11 65.5

Find 149 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGTGATCCCTATTTA+TGG 0.123424 tig0028698:-50364 Msa1439060:CDS
AAACTGAAATCTCTGGATTT+TGG 0.144007 tig0028698:+46820 None:intergenic
AGATAGGTAGGGTGGGATTA+AGG 0.217206 tig0028698:-50537 Msa1439060:CDS
TTTCTAAATGCAGCTGAATA+AGG 0.250514 tig0028698:-47564 Msa1439060:intron
GGATAAACGTTGCCATAAAT+AGG 0.257987 tig0028698:+50352 None:intergenic
AACGAATCGATTGATGAAAT+TGG 0.264253 tig0028698:+48403 None:intergenic
ATTTCATAGTCACATTGATT+AGG 0.289901 tig0028698:+49214 None:intergenic
CACCCTTTAGATGGAATACT+TGG 0.291237 tig0028698:-48571 Msa1439060:CDS
TTACCAAGCAATGATTTCTT+TGG 0.294065 tig0028698:-48160 Msa1439060:intron
AGTGTCAACATCAAGAAAAT+AGG 0.297686 tig0028698:+49696 None:intergenic
TTTCATAGTCACATTGATTA+GGG 0.312831 tig0028698:+49215 None:intergenic
AGCATTGTGTAGAGTATATT+GGG 0.314014 tig0028698:-46644 Msa1439060:three_prime_UTR
TCAACTTACCACCCTTTAGA+TGG 0.325308 tig0028698:-48580 Msa1439060:CDS
CTAAATTCTCACCTCCAATT+AGG 0.327781 tig0028698:+47183 None:intergenic
AAGCATTGTGTAGAGTATAT+TGG 0.329838 tig0028698:-46645 Msa1439060:three_prime_UTR
TTGGGTGAACTGAACCTAAT+TGG 0.334057 tig0028698:-47197 Msa1439060:CDS
TCTTTAAAAGTACCTAATTA+AGG 0.339236 tig0028698:-46793 Msa1439060:three_prime_UTR
TTTAAATTATTGATTCTTGT+TGG 0.351690 tig0028698:+50696 None:intergenic
CCTTCTTGTTCAGCTTGGTT+TGG 0.352799 tig0028698:-50475 Msa1439060:CDS
GTCATATGCATGCCTTAATT+AGG 0.358204 tig0028698:+46781 None:intergenic
GATAGGTAGGGTGGGATTAA+GGG 0.398450 tig0028698:-50536 Msa1439060:CDS
AGATCATAAACTGAAATCTC+TGG 0.399104 tig0028698:+46813 None:intergenic
TGAATCATTAGATTATTTCC+TGG 0.405081 tig0028698:+50993 None:intergenic
AGTTCACCCAATCCTACTTC+AGG 0.414059 tig0028698:+47209 None:intergenic
GGAGCAGGAAAGAAGTTTCC+AGG 0.414558 tig0028698:-51011 None:intergenic
AAGTTGAAGGTGAAAATATC+TGG 0.417456 tig0028698:+48596 None:intergenic
GTGCCATTCTAACTTTAAGT+TGG 0.419171 tig0028698:+49116 None:intergenic
AGAAGAAGATGAAGATAGGT+AGG 0.420924 tig0028698:-50549 Msa1439060:exon
GACAACGAGAAGCAGTTCAT+TGG 0.422112 tig0028698:-46871 Msa1439060:CDS
GATAAACGTTGCCATAAATA+GGG 0.423110 tig0028698:+50353 None:intergenic
ATGGCAACGTTTATCCTGTT+GGG 0.427167 tig0028698:-50345 Msa1439060:intron
GTGTCAACATCAAGAAAATA+GGG 0.431013 tig0028698:+49697 None:intergenic
ATAGGTAAAGTCTGGTCATC+AGG 0.433183 tig0028698:+47512 None:intergenic
ACTTGCCTTCTTGTTCAGCT+TGG 0.434467 tig0028698:-50480 Msa1439060:CDS
AACAAGAAGAAGATGAAGAT+AGG 0.439947 tig0028698:-50553 Msa1439060:exon
TTAAATATTATCTTTGACAC+TGG 0.441413 tig0028698:-48213 Msa1439060:CDS
GAAGATGAAGATAGGTAGGG+TGG 0.442669 tig0028698:-50545 Msa1439060:exon
CTGAGAGTTGAAGTATGTAT+AGG 0.443665 tig0028698:+48185 None:intergenic
GATATTATAAGATAAGCTTC+AGG 0.447328 tig0028698:+47374 None:intergenic
GATATCACAGTTGAATAGTC+AGG 0.453876 tig0028698:-48524 Msa1439060:CDS
AAGTTGAAAAGTTGTAGAAA+AGG 0.460593 tig0028698:+50886 None:intergenic
TTGGTGAAACTAAGTGTTAG+TGG 0.461386 tig0028698:+47431 None:intergenic
AGTCCAAGTATTCCATCTAA+AGG 0.461510 tig0028698:+48568 None:intergenic
GGTGGGATTAAGGGTGATGA+TGG 0.463114 tig0028698:-50527 Msa1439060:CDS
AACTTTAAGTTGGACTCCAT+TGG 0.463263 tig0028698:+49126 None:intergenic
TATGGCAACGTTTATCCTGT+TGG 0.466319 tig0028698:-50346 Msa1439060:CDS
GTTATTTGTTGCAAGAATAT+GGG 0.467337 tig0028698:-47260 Msa1439060:intron
TTAGATGGAATACTTGGACT+TGG 0.471121 tig0028698:-48565 Msa1439060:CDS
TGTACTAGTTCATGAAGAAA+AGG 0.472388 tig0028698:+50730 None:intergenic
GAACGGCCCTGAAGTAGGAT+TGG 0.472405 tig0028698:-47216 Msa1439060:CDS
GGAATACTATTGCAATCTGC+AGG 0.473909 tig0028698:+46841 None:intergenic
GTCCAAGTATTCCATCTAAA+GGG 0.477058 tig0028698:+48569 None:intergenic
TGAAAGAAACTGAAGGATAA+TGG 0.477507 tig0028698:+50655 None:intergenic
ATTAATGCATATTATAGAGC+AGG 0.483123 tig0028698:-46732 Msa1439060:three_prime_UTR
ATCGTATCACGTTAATTTGA+CGG 0.486448 tig0028698:-46557 Msa1439060:three_prime_UTR
TAATATTACCTCAGAACATT+GGG 0.489036 tig0028698:+49633 None:intergenic
ACATCAAGAAAATAGGGCCT+TGG 0.492843 tig0028698:+49703 None:intergenic
AATGAAATATCATACCCAAC+AGG 0.493100 tig0028698:+50331 None:intergenic
GGAGGAAGGAAGACCGGGGT+TGG 0.493414 tig0028698:-48240 Msa1439060:CDS
ACCTCAGAACATTGGGTACA+AGG 0.494290 tig0028698:+49640 None:intergenic
CTTAAAGTTAGAATGGCACT+TGG 0.502205 tig0028698:-49112 Msa1439060:CDS
GCCAGCACATAGGTAAAGTC+TGG 0.502564 tig0028698:+47504 None:intergenic
AAGATGAAGATAGGTAGGGT+GGG 0.502567 tig0028698:-50544 Msa1439060:CDS
AACGGCCCTGAAGTAGGATT+GGG 0.503963 tig0028698:-47215 Msa1439060:CDS
GTTCACCCAATCCTACTTCA+GGG 0.504181 tig0028698:+47210 None:intergenic
ATGATTCTTCTCGAATGAGT+TGG 0.504399 tig0028698:-48429 Msa1439060:CDS
TACCATCACTTTGTCTAGCA+TGG 0.505530 tig0028698:+46897 None:intergenic
CATACCTTGTGAGTAAGAAA+AGG 0.506186 tig0028698:-50815 Msa1439060:five_prime_UTR
ACAGTTGAATAGTCAGGGCT+TGG 0.506595 tig0028698:-48518 Msa1439060:CDS
ATTGGGGTAAGCTATTATGC+AGG 0.506850 tig0028698:-46627 Msa1439060:three_prime_UTR
AGGTTTAACTCTTCCACCAT+TGG 0.508559 tig0028698:+47412 None:intergenic
AGTCCAACTTAAAGTTAGAA+TGG 0.510476 tig0028698:-49119 Msa1439060:CDS
TCAAGAAAATAGGGCCTTGG+TGG 0.511612 tig0028698:+49706 None:intergenic
TACCTTCTCAACTTCACCAA+TGG 0.512014 tig0028698:-49142 Msa1439060:CDS
CTATACATACTTCAACTCTC+AGG 0.516576 tig0028698:-48184 Msa1439060:CDS
TGTTTAAGCTCGCGAGGAGG+GGG 0.519451 tig0028698:-48475 Msa1439060:CDS
TGGGAGAGCGTGTGAATGAA+TGG 0.519940 tig0028698:+50942 None:intergenic
ATGGAATACTTGGACTTGGA+AGG 0.520338 tig0028698:-48561 Msa1439060:CDS
TTTGGTAATAAACGCAAAAG+TGG 0.521006 tig0028698:-50457 Msa1439060:CDS
TCCTCTATGATCTATAGTAA+TGG 0.521341 tig0028698:+50577 None:intergenic
ATTCTGAACGGCCCTGAAGT+AGG 0.523129 tig0028698:-47221 Msa1439060:CDS
TGGTGAATGAGCAAGTGTTA+AGG 0.528403 tig0028698:+50962 None:intergenic
CGAGAAGCAGTTCATTGGAT+GGG 0.531219 tig0028698:-46866 Msa1439060:CDS
CTTGAAGACATGGCTTCACC+TGG 0.531998 tig0028698:+50418 None:intergenic
TCTAAAGGGTGGTAAGTTGA+AGG 0.532635 tig0028698:+48583 None:intergenic
TGGAATACTTGGACTTGGAA+GGG 0.533058 tig0028698:-48560 Msa1439060:CDS
TTCACATGTGTAGTCATCGG+TGG 0.533364 tig0028698:+49240 None:intergenic
GAAAATAGGGCCTTGGTGGT+TGG 0.533650 tig0028698:+49710 None:intergenic
GGGCTTGGTGCGAAATGTGA+TGG 0.536228 tig0028698:-48503 Msa1439060:CDS
AGGGGAAAACATTACTCTGC+AGG 0.544182 tig0028698:-48282 Msa1439060:CDS
TGATTCTTGTTGGAAAGAGT+TGG 0.546273 tig0028698:+50706 None:intergenic
AATATGGGAAATGTTTGTCT+AGG 0.546632 tig0028698:-47245 Msa1439060:CDS
ACCAGACTTTACCTATGTGC+TGG 0.546884 tig0028698:-47505 Msa1439060:CDS
CTCCATTGGTGAAGTTGAGA+AGG 0.547745 tig0028698:+49140 None:intergenic
ATAAACTCAACATTAGAAAG+TGG 0.548243 tig0028698:+50759 None:intergenic
GGAATACTTGGACTTGGAAG+GGG 0.550065 tig0028698:-48559 Msa1439060:CDS
GTAATATTACCTCAGAACAT+TGG 0.551100 tig0028698:+49632 None:intergenic
AGAAACTGAAGGATAATGGT+GGG 0.551649 tig0028698:+50659 None:intergenic
ACACTTAGTTTCACCAATGG+TGG 0.552466 tig0028698:-47425 Msa1439060:CDS
ATAAATAGGGATCACAATTG+AGG 0.553125 tig0028698:+50366 None:intergenic
AGTCTCATGAACCATGCTGC+TGG 0.557344 tig0028698:-50391 Msa1439060:CDS
TCAGGAGGGATCTCAAACTG+AGG 0.558793 tig0028698:+47392 None:intergenic
GAAGAAGATGAAGATAGGTA+GGG 0.561089 tig0028698:-50548 Msa1439060:exon
GTCTTCACATGTGTAGTCAT+CGG 0.562506 tig0028698:+49237 None:intergenic
GCTGATCAATACTCAACCCT+TGG 0.562559 tig0028698:-49184 Msa1439060:CDS
TGACCAAAGAAATCATTGCT+TGG 0.564667 tig0028698:+48157 None:intergenic
ACTTCATTTATGCTTCTGAA+AGG 0.566258 tig0028698:+47470 None:intergenic
ATATCACAGTTGAATAGTCA+GGG 0.567767 tig0028698:-48523 Msa1439060:CDS
GAGACTTGGTCTTGAAGACA+TGG 0.568180 tig0028698:+50408 None:intergenic
ATTGTTTAAGCTCGCGAGGA+GGG 0.569291 tig0028698:-48477 Msa1439060:CDS
ACGAGAAGCAGTTCATTGGA+TGG 0.576343 tig0028698:-46867 Msa1439060:CDS
TCACATGTGTAGTCATCGGT+GGG 0.576365 tig0028698:+49241 None:intergenic
TATAATGTTACTCTCAACAT+AGG 0.586798 tig0028698:-49733 Msa1439060:CDS
GCAGCATGGTTCATGAGACT+TGG 0.589743 tig0028698:+50394 None:intergenic
CATTGTTTAAGCTCGCGAGG+AGG 0.594028 tig0028698:-48478 Msa1439060:CDS
GGCTTGGTGCGAAATGTGAT+GGG 0.595102 tig0028698:-48502 Msa1439060:CDS
CATATTATAGAGCAGGGTGA+TGG 0.595503 tig0028698:-46725 Msa1439060:three_prime_UTR
ATTCAACTGTGATATCAAGC+TGG 0.597014 tig0028698:+48531 None:intergenic
GAGAAGCAGTTCATTGGATG+GGG 0.597082 tig0028698:-46865 Msa1439060:CDS
TCCATTACTATAGATCATAG+AGG 0.597908 tig0028698:-50578 Msa1439060:five_prime_UTR
CCAAACCAAGCTGAACAAGA+AGG 0.598844 tig0028698:+50475 None:intergenic
TTAATGCATATTATAGAGCA+GGG 0.602995 tig0028698:-46731 Msa1439060:three_prime_UTR
ACTTGGACTTGGAAGGGGAA+AGG 0.604303 tig0028698:-48554 Msa1439060:CDS
AAGAAACTGAAGGATAATGG+TGG 0.604920 tig0028698:+50658 None:intergenic
TTGGGGTAAGCTATTATGCA+GGG 0.608982 tig0028698:-46626 Msa1439060:three_prime_UTR
CTAACACTTAGTTTCACCAA+TGG 0.609380 tig0028698:-47428 Msa1439060:CDS
ACTTTACCTATGTGCTGGCA+TGG 0.609706 tig0028698:-47500 Msa1439060:CDS
TTGTTTAAGCTCGCGAGGAG+GGG 0.611048 tig0028698:-48476 Msa1439060:CDS
ATCATTTAGAAGTACACCAA+GGG 0.613371 tig0028698:+49168 None:intergenic
GGACATTGTTTAAGCTCGCG+AGG 0.614419 tig0028698:-48481 Msa1439060:CDS
AATATTTAAACTTCCAACCC+CGG 0.615370 tig0028698:+48227 None:intergenic
TTAAAGTTAGAATGGCACTT+GGG 0.620505 tig0028698:-49111 Msa1439060:intron
ATTATAAGATAAGCTTCAGG+AGG 0.624826 tig0028698:+47377 None:intergenic
ATCTTTGCAAGATTCATGTG+TGG 0.624858 tig0028698:-50839 Msa1439060:five_prime_UTR
TCCTTGTACCCAATGTTCTG+AGG 0.637225 tig0028698:-49641 Msa1439060:intron
ATCCATGCTAGACAAAGTGA+TGG 0.638414 tig0028698:-46899 Msa1439060:CDS
GAAACTGAAGGATAATGGTG+GGG 0.638757 tig0028698:+50660 None:intergenic
ACACTGGTAGCGAACTCACA+TGG 0.642611 tig0028698:-49678 Msa1439060:CDS
GGTGAACTGAACCTAATTGG+AGG 0.647086 tig0028698:-47194 Msa1439060:intron
CAAGTATTCCATCTAAAGGG+TGG 0.648915 tig0028698:+48572 None:intergenic
GGGTACAAGGAGCATCACAT+TGG 0.654731 tig0028698:+49653 None:intergenic
GTTTGTCTAGGCATTCTGAA+CGG 0.654989 tig0028698:-47233 Msa1439060:CDS
GTATGGATGAAAGAAACTGA+AGG 0.655555 tig0028698:+50648 None:intergenic
CATCATTTAGAAGTACACCA+AGG 0.656080 tig0028698:+49167 None:intergenic
CAATTGAGGAACCAGCAGCA+TGG 0.660713 tig0028698:+50380 None:intergenic
AATTTGACGGCATTAGCACG+AGG 0.660806 tig0028698:-46544 None:intergenic
GCATTGTGTAGAGTATATTG+GGG 0.685659 tig0028698:-46643 Msa1439060:three_prime_UTR
TCAACATAGGCCAACCACCA+AGG 0.689202 tig0028698:-49720 Msa1439060:CDS
TTATAAGATAAGCTTCAGGA+GGG 0.705622 tig0028698:+47378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAAAT+GGG + tig0028698:46633-46652 None:intergenic 0.0%
!! ATAATAATAATAATAATAAA+TGG + tig0028698:46634-46653 None:intergenic 0.0%
!!! TTTATTTTTACTATAATGTA+TGG + tig0028698:46925-46944 None:intergenic 10.0%
!! ATTAAAATTCAATTCATAAA+AGG + tig0028698:47351-47370 None:intergenic 10.0%
!!! TGAATTGAATTTTAATTTTT+TGG - tig0028698:47355-47374 Msa1439060:intron 10.0%
!!! AAATTGATATTCATTTTTAT+TGG - tig0028698:47612-47631 Msa1439060:intron 10.0%
!!! ATTTATATTATTTTCTAGAA+TGG + tig0028698:49719-49738 None:intergenic 10.0%
!!! ATTAATAATTTCTAGTATAA+AGG + tig0028698:49937-49956 None:intergenic 10.0%
!! TTATACTAGAAATTATTAAT+TGG - tig0028698:49937-49956 Msa1439060:intron 10.0%
!!! TTTAAATTATTGATTCTTGT+TGG + tig0028698:46860-46879 None:intergenic 15.0%
!! ATATTATATGCAATTTATGT+AGG + tig0028698:48180-48199 None:intergenic 15.0%
!! ATTAACATAAGATATAATCA+AGG - tig0028698:49653-49672 Msa1439060:CDS 15.0%
!!! AATATTTTGTGATTTCAAAA+TGG - tig0028698:49744-49763 Msa1439060:intron 15.0%
!! TAAGTATTTAATGATGAAAT+TGG + tig0028698:49873-49892 None:intergenic 15.0%
!! TTGTTAACTGTTATAATAAA+TGG - tig0028698:50234-50253 Msa1439060:intron 15.0%
!! ATGATATTTCATTTCTTTCT+AGG - tig0028698:47232-47251 Msa1439060:CDS 20.0%
!!! TTTCTTGTTTATCAATTCTT+AGG - tig0028698:47464-47483 Msa1439060:CDS 20.0%
!!! GGTTTTCTTTTATTTAATTG+TGG + tig0028698:47569-47588 None:intergenic 20.0%
!!! ACAGACAAATGTATTTTTTT+GGG - tig0028698:47635-47654 Msa1439060:intron 20.0%
!! ATGGTTTATATAAGTGAATT+AGG - tig0028698:48607-48626 Msa1439060:CDS 20.0%
!! AATAGATATGACATAAATTG+TGG + tig0028698:48873-48892 None:intergenic 20.0%
!! TTAAATATTATCTTTGACAC+TGG - tig0028698:49340-49359 Msa1439060:intron 20.0%
!!! GTATTTTTAGTTAACTAGTT+TGG - tig0028698:49587-49606 Msa1439060:intron 20.0%
!! GCATTTAGAAAATTAACAAA+AGG + tig0028698:49980-49999 None:intergenic 20.0%
!! ATATTATGTTATGTAAGTGT+TGG - tig0028698:50610-50629 Msa1439060:five_prime_UTR 20.0%
!!! TCTTTAAAAGTACCTAATTA+AGG - tig0028698:50760-50779 Msa1439060:five_prime_UTR 20.0%
!!! GTTTTATTACTTTATCTTCA+TGG - tig0028698:50860-50879 Msa1439060:five_prime_UTR 20.0%
! TGAATCATTAGATTATTTCC+TGG + tig0028698:46563-46582 None:intergenic 25.0%
! AAGTTGAAAAGTTGTAGAAA+AGG + tig0028698:46670-46689 None:intergenic 25.0%
! ATAAACTCAACATTAGAAAG+TGG + tig0028698:46797-46816 None:intergenic 25.0%
! AATTTCAAAGCAACAGAAAA+GGG + tig0028698:47490-47509 None:intergenic 25.0%
! AAATTTCAAAGCAACAGAAA+AGG + tig0028698:47491-47510 None:intergenic 25.0%
!!! GACAGACAAATGTATTTTTT+TGG - tig0028698:47634-47653 Msa1439060:intron 25.0%
!!! TGTATTTTTTTGGGACATTT+CGG - tig0028698:47644-47663 Msa1439060:intron 25.0%
! ATTAGAATATCAATTTCGTG+AGG + tig0028698:47765-47784 None:intergenic 25.0%
! TATAATGTTACTCTCAACAT+AGG - tig0028698:47820-47839 Msa1439060:intron 25.0%
! TAATATTACCTCAGAACATT+GGG + tig0028698:47923-47942 None:intergenic 25.0%
!!! ATGTGCTGATTATAATTGAT+TGG - tig0028698:48106-48125 Msa1439060:intron 25.0%
! TCAGCAAAAAAAAATTACTC+TGG - tig0028698:48135-48154 Msa1439060:intron 25.0%
!! TTTCATAGTCACATTGATTA+GGG + tig0028698:48341-48360 None:intergenic 25.0%
!! ATTTCATAGTCACATTGATT+AGG + tig0028698:48342-48361 None:intergenic 25.0%
! AATACAAATACAAACCAGAA+TGG - tig0028698:48588-48607 Msa1439060:CDS 25.0%
! TTCACTTATATAAACCATTC+TGG + tig0028698:48605-48624 None:intergenic 25.0%
!! TGATTACATTACTTCTAAGA+GGG + tig0028698:49445-49464 None:intergenic 25.0%
! TTGATTACATTACTTCTAAG+AGG + tig0028698:49446-49465 None:intergenic 25.0%
! GTAATGTAATCAAGTAGTTA+TGG - tig0028698:49453-49472 Msa1439060:intron 25.0%
! TCAAGTAGTTATGGTTATTA+TGG - tig0028698:49462-49481 Msa1439060:intron 25.0%
! ATTATGTGTATTACACAACA+GGG + tig0028698:49786-49805 None:intergenic 25.0%
! AATTATGTGTATTACACAAC+AGG + tig0028698:49787-49806 None:intergenic 25.0%
! ACTAGAAATTATTAATTGGC+AGG - tig0028698:49941-49960 Msa1439060:intron 25.0%
! GATATTATAAGATAAGCTTC+AGG + tig0028698:50182-50201 None:intergenic 25.0%
!! TGTTATTTGTTGCAAGAATA+TGG - tig0028698:50292-50311 Msa1439060:intron 25.0%
!! GTTATTTGTTGCAAGAATAT+GGG - tig0028698:50293-50312 Msa1439060:intron 25.0%
! ATTAATGCATATTATAGAGC+AGG - tig0028698:50821-50840 Msa1439060:five_prime_UTR 25.0%
! TTAATGCATATTATAGAGCA+GGG - tig0028698:50822-50841 Msa1439060:five_prime_UTR 25.0%
! TTATCCTTTTCTTACTCACA+AGG + tig0028698:46745-46764 None:intergenic 30.0%
TGTACTAGTTCATGAAGAAA+AGG + tig0028698:46826-46845 None:intergenic 30.0%
TGAAAGAAACTGAAGGATAA+TGG + tig0028698:46901-46920 None:intergenic 30.0%
TCCATTACTATAGATCATAG+AGG - tig0028698:46975-46994 Msa1439060:intron 30.0%
TCCTCTATGATCTATAGTAA+TGG + tig0028698:46979-46998 None:intergenic 30.0%
AACAAGAAGAAGATGAAGAT+AGG - tig0028698:47000-47019 Msa1439060:intron 30.0%
! TTTGGTAATAAACGCAAAAG+TGG - tig0028698:47096-47115 Msa1439060:intron 30.0%
ATAAATAGGGATCACAATTG+AGG + tig0028698:47190-47209 None:intergenic 30.0%
TCAATTGTGATCCCTATTTA+TGG - tig0028698:47189-47208 Msa1439060:intron 30.0%
GATAAACGTTGCCATAAATA+GGG + tig0028698:47203-47222 None:intergenic 30.0%
AATGAAATATCATACCCAAC+AGG + tig0028698:47225-47244 None:intergenic 30.0%
AGTTTAAGGGGTTAAAAGAT+CGG + tig0028698:47721-47740 None:intergenic 30.0%
CTGCAAAAGTTGAAATTTAC+GGG + tig0028698:47796-47815 None:intergenic 30.0%
CCTGCAAAAGTTGAAATTTA+CGG + tig0028698:47797-47816 None:intergenic 30.0%
GTGTCAACATCAAGAAAATA+GGG + tig0028698:47859-47878 None:intergenic 30.0%
AGTGTCAACATCAAGAAAAT+AGG + tig0028698:47860-47879 None:intergenic 30.0%
! TATTTTCTTGATGTTGACAC+TGG - tig0028698:47859-47878 Msa1439060:intron 30.0%
GTAATATTACCTCAGAACAT+TGG + tig0028698:47924-47943 None:intergenic 30.0%
GCAAAAAAAAATTACTCTGG+TGG - tig0028698:48138-48157 Msa1439060:intron 30.0%
! ATCATTTAGAAGTACACCAA+GGG + tig0028698:48388-48407 None:intergenic 30.0%
AGTCCAACTTAAAGTTAGAA+TGG - tig0028698:48434-48453 Msa1439060:CDS 30.0%
TTAAAGTTAGAATGGCACTT+GGG - tig0028698:48442-48461 Msa1439060:CDS 30.0%
ATATTTCAAGAGAACATGCA+AGG + tig0028698:48480-48499 None:intergenic 30.0%
TTTGTGGAATGGTAAAACTT+AGG + tig0028698:48767-48786 None:intergenic 30.0%
TCAAATAGTAGATCATGCAT+TGG + tig0028698:48792-48811 None:intergenic 30.0%
TCAAACATGTCATTGTTGAA+AGG + tig0028698:48836-48855 None:intergenic 30.0%
TTGATTCCAATATACAGATG+TGG - tig0028698:48928-48947 Msa1439060:intron 30.0%
TCATATCCACATCTGTATAT+TGG + tig0028698:48937-48956 None:intergenic 30.0%
AAGTTGAAGGTGAAAATATC+TGG + tig0028698:48960-48979 None:intergenic 30.0%
ATATCACAGTTGAATAGTCA+GGG - tig0028698:49030-49049 Msa1439060:intron 30.0%
AACGAATCGATTGATGAAAT+TGG + tig0028698:49153-49172 None:intergenic 30.0%
TGTCACTAGTATAATACATG+TGG + tig0028698:49202-49221 None:intergenic 30.0%
!! TCTTTTATGTTGTTTGTGTC+AGG - tig0028698:49251-49270 Msa1439060:intron 30.0%
!! CTTTTATGTTGTTTGTGTCA+GGG - tig0028698:49252-49271 Msa1439060:intron 30.0%
!! TTTTATGTTGTTTGTGTCAG+GGG - tig0028698:49253-49272 Msa1439060:intron 30.0%
AATATTTAAACTTCCAACCC+CGG + tig0028698:49329-49348 None:intergenic 30.0%
TTACCAAGCAATGATTTCTT+TGG - tig0028698:49393-49412 Msa1439060:intron 30.0%
! GATTACATTACTTCTAAGAG+GGG + tig0028698:49444-49463 None:intergenic 30.0%
TTTCAGTTTCAGTATATCCA+AGG - tig0028698:49683-49702 Msa1439060:CDS 30.0%
TTTCTAAATGCAGCTGAATA+AGG - tig0028698:49989-50008 Msa1439060:intron 30.0%
ACTTCATTTATGCTTCTGAA+AGG + tig0028698:50086-50105 None:intergenic 30.0%
TTATAAGATAAGCTTCAGGA+GGG + tig0028698:50178-50197 None:intergenic 30.0%
ATTATAAGATAAGCTTCAGG+AGG + tig0028698:50179-50198 None:intergenic 30.0%
AATATGGGAAATGTTTGTCT+AGG - tig0028698:50308-50327 Msa1439060:intron 30.0%
TTTAGCTACATTGTCGTATT+TGG - tig0028698:50388-50407 Msa1439060:CDS 30.0%
! AAACTGAAATCTCTGGATTT+TGG + tig0028698:50736-50755 None:intergenic 30.0%
AGATCATAAACTGAAATCTC+TGG + tig0028698:50743-50762 None:intergenic 30.0%
! AAGCATTGTGTAGAGTATAT+TGG - tig0028698:50908-50927 Msa1439060:five_prime_UTR 30.0%
AGCATTGTGTAGAGTATATT+GGG - tig0028698:50909-50928 Msa1439060:five_prime_UTR 30.0%
! ATCGTATCACGTTAATTTGA+CGG - tig0028698:50996-51015 Msa1439060:five_prime_UTR 30.0%
ATCTTTGCAAGATTCATGTG+TGG - tig0028698:46714-46733 Msa1439060:three_prime_UTR 35.0%
CATACCTTGTGAGTAAGAAA+AGG - tig0028698:46738-46757 Msa1439060:three_prime_UTR 35.0%
TGATTCTTGTTGGAAAGAGT+TGG + tig0028698:46850-46869 None:intergenic 35.0%
! AGAAACTGAAGGATAATGGT+GGG + tig0028698:46897-46916 None:intergenic 35.0%
! AAGAAACTGAAGGATAATGG+TGG + tig0028698:46898-46917 None:intergenic 35.0%
GTATGGATGAAAGAAACTGA+AGG + tig0028698:46908-46927 None:intergenic 35.0%
AGAAGAAGATGAAGATAGGT+AGG - tig0028698:47004-47023 Msa1439060:intron 35.0%
GAAGAAGATGAAGATAGGTA+GGG - tig0028698:47005-47024 Msa1439060:intron 35.0%
! GGAAGAAACTCAATTTTACC+AGG - tig0028698:47117-47136 Msa1439060:intron 35.0%
GGATAAACGTTGCCATAAAT+AGG + tig0028698:47204-47223 None:intergenic 35.0%
TGAGTATCCAAATTCATACC+AGG - tig0028698:47428-47447 Msa1439060:CDS 35.0%
AGAAAGTAATATTCCAGTCC+TGG + tig0028698:47449-47468 None:intergenic 35.0%
AAAACCTCTTCTGACATTGA+TGG - tig0028698:47583-47602 Msa1439060:intron 35.0%
AAACCTCTTCTGACATTGAT+GGG - tig0028698:47584-47603 Msa1439060:intron 35.0%
TTAACCCCTTAAACTCAAAC+CGG - tig0028698:47726-47745 Msa1439060:intron 35.0%
!! TTCAACCGGTTTGAGTTTAA+GGG + tig0028698:47734-47753 None:intergenic 35.0%
CAAAAGTTGAAATTTACGGG+CGG + tig0028698:47793-47812 None:intergenic 35.0%
! CCGTAAATTTCAACTTTTGC+AGG - tig0028698:47794-47813 Msa1439060:intron 35.0%
ATGTATCTATAGGCAAGGAT+GGG + tig0028698:48032-48051 None:intergenic 35.0%
TATGTATCTATAGGCAAGGA+TGG + tig0028698:48033-48052 None:intergenic 35.0%
TCAACGCGTTATGTATCTAT+AGG + tig0028698:48042-48061 None:intergenic 35.0%
CAGGGTATAAAATCATTGCT+AGG + tig0028698:48264-48283 None:intergenic 35.0%
! CATCATTTAGAAGTACACCA+AGG + tig0028698:48389-48408 None:intergenic 35.0%
!! AACTTTAAGTTGGACTCCAT+TGG + tig0028698:48430-48449 None:intergenic 35.0%
! GTGCCATTCTAACTTTAAGT+TGG + tig0028698:48440-48459 None:intergenic 35.0%
CTTAAAGTTAGAATGGCACT+TGG - tig0028698:48441-48460 Msa1439060:CDS 35.0%
GACATAAATTGTGGTCATCA+TGG + tig0028698:48864-48883 None:intergenic 35.0%
GTCCAAGTATTCCATCTAAA+GGG + tig0028698:48987-49006 None:intergenic 35.0%
AGTCCAAGTATTCCATCTAA+AGG + tig0028698:48988-49007 None:intergenic 35.0%
TTAGATGGAATACTTGGACT+TGG - tig0028698:48988-49007 Msa1439060:intron 35.0%
ATTCAACTGTGATATCAAGC+TGG + tig0028698:49025-49044 None:intergenic 35.0%
GATATCACAGTTGAATAGTC+AGG - tig0028698:49029-49048 Msa1439060:intron 35.0%
ATGATTCTTCTCGAATGAGT+TGG - tig0028698:49124-49143 Msa1439060:CDS 35.0%
CTGAGAGTTGAAGTATGTAT+AGG + tig0028698:49371-49390 None:intergenic 35.0%
CTATACATACTTCAACTCTC+AGG - tig0028698:49369-49388 Msa1439060:intron 35.0%
TGACCAAAGAAATCATTGCT+TGG + tig0028698:49399-49418 None:intergenic 35.0%
GTGTTTCTCGTTAGTTAGTT+TGG - tig0028698:49556-49575 Msa1439060:intron 35.0%
TTGGTGAAACTAAGTGTTAG+TGG + tig0028698:50125-50144 None:intergenic 35.0%
CTAACACTTAGTTTCACCAA+TGG - tig0028698:50125-50144 Msa1439060:intron 35.0%
CTAAATTCTCACCTCCAATT+AGG + tig0028698:50373-50392 None:intergenic 35.0%
!! TGGTGCTACATAGATAGTAA+TGG - tig0028698:50534-50553 Msa1439060:CDS 35.0%
GTCATATGCATGCCTTAATT+AGG + tig0028698:50775-50794 None:intergenic 35.0%
GCATTGTGTAGAGTATATTG+GGG - tig0028698:50910-50929 Msa1439060:five_prime_UTR 35.0%
TGGTGAATGAGCAAGTGTTA+AGG + tig0028698:46594-46613 None:intergenic 40.0%
! GAAACTGAAGGATAATGGTG+GGG + tig0028698:46896-46915 None:intergenic 40.0%
AAGATGAAGATAGGTAGGGT+GGG - tig0028698:47009-47028 Msa1439060:intron 40.0%
TATGGCAACGTTTATCCTGT+TGG - tig0028698:47207-47226 Msa1439060:CDS 40.0%
ATGGCAACGTTTATCCTGTT+GGG - tig0028698:47208-47227 Msa1439060:CDS 40.0%
ATCCAAATTCATACCAGGAC+TGG - tig0028698:47433-47452 Msa1439060:CDS 40.0%
TTCCAGTCCTGGTATGAATT+TGG + tig0028698:47438-47457 None:intergenic 40.0%
AACCTCTTCTGACATTGATG+GGG - tig0028698:47585-47604 Msa1439060:intron 40.0%
!! TCAACCGGTTTGAGTTTAAG+GGG + tig0028698:47733-47752 None:intergenic 40.0%
!! CTTCAACCGGTTTGAGTTTA+AGG + tig0028698:47735-47754 None:intergenic 40.0%
ACATCAAGAAAATAGGGCCT+TGG + tig0028698:47853-47872 None:intergenic 40.0%
GCGTTATGTATCTATAGGCA+AGG + tig0028698:48037-48056 None:intergenic 40.0%
GTCTTCACATGTGTAGTCAT+CGG + tig0028698:48319-48338 None:intergenic 40.0%
TACCTTCTCAACTTCACCAA+TGG - tig0028698:48411-48430 Msa1439060:CDS 40.0%
TGCTATTGTCTCTATGTGTG+AGG + tig0028698:48739-48758 None:intergenic 40.0%
! TCTAAAGGGTGGTAAGTTGA+AGG + tig0028698:48973-48992 None:intergenic 40.0%
TCAACTTACCACCCTTTAGA+TGG - tig0028698:48973-48992 Msa1439060:intron 40.0%
CAAGTATTCCATCTAAAGGG+TGG + tig0028698:48984-49003 None:intergenic 40.0%
CACCCTTTAGATGGAATACT+TGG - tig0028698:48982-49001 Msa1439060:intron 40.0%
ATGGAATACTTGGACTTGGA+AGG - tig0028698:48992-49011 Msa1439060:intron 40.0%
TGGAATACTTGGACTTGGAA+GGG - tig0028698:48993-49012 Msa1439060:intron 40.0%
!!! CTGAACTTGTTTTTGGAGGA+AGG - tig0028698:49299-49318 Msa1439060:intron 40.0%
AGAATGGACACTATAGTCCT+TGG + tig0028698:49703-49722 None:intergenic 40.0%
TCATTTGCTCAATCAACTCG+AGG - tig0028698:49823-49842 Msa1439060:intron 40.0%
!!! TCATCAGGTGCTGCTTTTAT+TGG + tig0028698:50029-50048 None:intergenic 40.0%
ATAGGTAAAGTCTGGTCATC+AGG + tig0028698:50044-50063 None:intergenic 40.0%
ACACTTAGTTTCACCAATGG+TGG - tig0028698:50128-50147 Msa1439060:intron 40.0%
AGGTTTAACTCTTCCACCAT+TGG + tig0028698:50144-50163 None:intergenic 40.0%
GTTTGTCTAGGCATTCTGAA+CGG - tig0028698:50320-50339 Msa1439060:intron 40.0%
TTGGGTGAACTGAACCTAAT+TGG - tig0028698:50356-50375 Msa1439060:CDS 40.0%
! ACACCTTCAGTTTGAAGTGT+TGG - tig0028698:50514-50533 Msa1439060:CDS 40.0%
ATCCATGCTAGACAAAGTGA+TGG - tig0028698:50654-50673 Msa1439060:five_prime_UTR 40.0%
TACCATCACTTTGTCTAGCA+TGG + tig0028698:50659-50678 None:intergenic 40.0%
GGAATACTATTGCAATCTGC+AGG + tig0028698:50715-50734 None:intergenic 40.0%
CATATTATAGAGCAGGGTGA+TGG - tig0028698:50828-50847 Msa1439060:five_prime_UTR 40.0%
ATTGGGGTAAGCTATTATGC+AGG - tig0028698:50926-50945 Msa1439060:five_prime_UTR 40.0%
TTGGGGTAAGCTATTATGCA+GGG - tig0028698:50927-50946 Msa1439060:five_prime_UTR 40.0%
GAAGATGAAGATAGGTAGGG+TGG - tig0028698:47008-47027 Msa1439060:intron 45.0%
AGATAGGTAGGGTGGGATTA+AGG - tig0028698:47016-47035 Msa1439060:intron 45.0%
GATAGGTAGGGTGGGATTAA+GGG - tig0028698:47017-47036 Msa1439060:intron 45.0%
ACTTGCCTTCTTGTTCAGCT+TGG - tig0028698:47073-47092 Msa1439060:intron 45.0%
CCAAACCAAGCTGAACAAGA+AGG + tig0028698:47081-47100 None:intergenic 45.0%
CCTTCTTGTTCAGCTTGGTT+TGG - tig0028698:47078-47097 Msa1439060:intron 45.0%
!! GAGACTTGGTCTTGAAGACA+TGG + tig0028698:47148-47167 None:intergenic 45.0%
TTCCCCATCAATGTCAGAAG+AGG + tig0028698:47590-47609 None:intergenic 45.0%
TCTTCTGACATTGATGGGGA+AGG - tig0028698:47589-47608 Msa1439060:intron 45.0%
TCAAGAAAATAGGGCCTTGG+TGG + tig0028698:47850-47869 None:intergenic 45.0%
TCCTTGTACCCAATGTTCTG+AGG - tig0028698:47912-47931 Msa1439060:intron 45.0%
ACCTCAGAACATTGGGTACA+AGG + tig0028698:47916-47935 None:intergenic 45.0%
TCATTGCTAGGCTTGTAGAG+TGG + tig0028698:48252-48271 None:intergenic 45.0%
GCACAAAGTGGATCTTTGCA+GGG + tig0028698:48282-48301 None:intergenic 45.0%
TCACATGTGTAGTCATCGGT+GGG + tig0028698:48315-48334 None:intergenic 45.0%
TTCACATGTGTAGTCATCGG+TGG + tig0028698:48316-48335 None:intergenic 45.0%
GCTGATCAATACTCAACCCT+TGG - tig0028698:48369-48388 Msa1439060:intron 45.0%
CTCCATTGGTGAAGTTGAGA+AGG + tig0028698:48416-48435 None:intergenic 45.0%
ATGCCTAGACGACTACACAA+TGG - tig0028698:48675-48694 Msa1439060:intron 45.0%
! ATGCATTGGCGTTTGTGGAA+TGG + tig0028698:48778-48797 None:intergenic 45.0%
! AGATCATGCATTGGCGTTTG+TGG + tig0028698:48783-48802 None:intergenic 45.0%
GGAATACTTGGACTTGGAAG+GGG - tig0028698:48994-49013 Msa1439060:intron 45.0%
ACAGTTGAATAGTCAGGGCT+TGG - tig0028698:49035-49054 Msa1439060:intron 45.0%
ATTGTTTAAGCTCGCGAGGA+GGG - tig0028698:49076-49095 Msa1439060:intron 45.0%
AGGGGAAAACATTACTCTGC+AGG - tig0028698:49271-49290 Msa1439060:intron 45.0%
!! GGACCAGCTGAACTTGTTTT+TGG - tig0028698:49292-49311 Msa1439060:intron 45.0%
CCTCCAAAAACAAGTTCAGC+TGG + tig0028698:49298-49317 None:intergenic 45.0%
!!! CCAGCTGAACTTGTTTTTGG+AGG - tig0028698:49295-49314 Msa1439060:intron 45.0%
!! GTTTTTGGAGGAAGGAAGAC+CGG - tig0028698:49307-49326 Msa1439060:intron 45.0%
!! TTTTTGGAGGAAGGAAGACC+GGG - tig0028698:49308-49327 Msa1439060:intron 45.0%
GCTGACGCTTAACACTTTCA+AGG + tig0028698:49514-49533 None:intergenic 45.0%
TGATGCGCCAAACTGACTAA+CGG + tig0028698:49629-49648 None:intergenic 45.0%
ACCAGACTTTACCTATGTGC+TGG - tig0028698:50048-50067 Msa1439060:intron 45.0%
! ACTTTACCTATGTGCTGGCA+TGG - tig0028698:50053-50072 Msa1439060:intron 45.0%
! CTTTTACCATGCCAGCACAT+AGG + tig0028698:50062-50081 None:intergenic 45.0%
GTTCACCCAATCCTACTTCA+GGG + tig0028698:50346-50365 None:intergenic 45.0%
AGTTCACCCAATCCTACTTC+AGG + tig0028698:50347-50366 None:intergenic 45.0%
GGTGAACTGAACCTAATTGG+AGG - tig0028698:50359-50378 Msa1439060:CDS 45.0%
! CTTCAAACTGAAGGTGTGTC+TGG + tig0028698:50511-50530 None:intergenic 45.0%
GCACCAACACTTCAAACTGA+AGG + tig0028698:50520-50539 None:intergenic 45.0%
GACAACGAGAAGCAGTTCAT+TGG - tig0028698:50682-50701 Msa1439060:five_prime_UTR 45.0%
ACGAGAAGCAGTTCATTGGA+TGG - tig0028698:50686-50705 Msa1439060:five_prime_UTR 45.0%
CGAGAAGCAGTTCATTGGAT+GGG - tig0028698:50687-50706 Msa1439060:five_prime_UTR 45.0%
GAGAAGCAGTTCATTGGATG+GGG - tig0028698:50688-50707 Msa1439060:five_prime_UTR 45.0%
! TGGGAGAGCGTGTGAATGAA+TGG + tig0028698:46614-46633 None:intergenic 50.0%
GGTGGGATTAAGGGTGATGA+TGG - tig0028698:47026-47045 Msa1439060:intron 50.0%
CTTGAAGACATGGCTTCACC+TGG + tig0028698:47138-47157 None:intergenic 50.0%
GCAGCATGGTTCATGAGACT+TGG + tig0028698:47162-47181 None:intergenic 50.0%
AGTCTCATGAACCATGCTGC+TGG - tig0028698:47162-47181 Msa1439060:intron 50.0%
CAATTGAGGAACCAGCAGCA+TGG + tig0028698:47176-47195 None:intergenic 50.0%
GTGAGGTTCGCTACTTCAAC+CGG + tig0028698:47748-47767 None:intergenic 50.0%
TCAACATAGGCCAACCACCA+AGG - tig0028698:47833-47852 Msa1439060:intron 50.0%
! GAAAATAGGGCCTTGGTGGT+TGG + tig0028698:47846-47865 None:intergenic 50.0%
! ACACTGGTAGCGAACTCACA+TGG - tig0028698:47875-47894 Msa1439060:intron 50.0%
!! GGGTACAAGGAGCATCACAT+TGG + tig0028698:47903-47922 None:intergenic 50.0%
CTAGGCTTGTAGAGTGGATG+GGG + tig0028698:48246-48265 None:intergenic 50.0%
GCTAGGCTTGTAGAGTGGAT+GGG + tig0028698:48247-48266 None:intergenic 50.0%
TGCTAGGCTTGTAGAGTGGA+TGG + tig0028698:48248-48267 None:intergenic 50.0%
CGCACAAAGTGGATCTTTGC+AGG + tig0028698:48283-48302 None:intergenic 50.0%
CGACCATTGTGTAGTCGTCT+AGG + tig0028698:48681-48700 None:intergenic 50.0%
ACTTGGACTTGGAAGGGGAA+AGG - tig0028698:48999-49018 Msa1439060:intron 50.0%
!! GGCTTGGTGCGAAATGTGAT+GGG - tig0028698:49051-49070 Msa1439060:intron 50.0%
GGACATTGTTTAAGCTCGCG+AGG - tig0028698:49072-49091 Msa1439060:intron 50.0%
CATTGTTTAAGCTCGCGAGG+AGG - tig0028698:49075-49094 Msa1439060:intron 50.0%
TTGTTTAAGCTCGCGAGGAG+GGG - tig0028698:49077-49096 Msa1439060:intron 50.0%
GGAGGGGGATACATCTTCTT+TGG - tig0028698:49093-49112 Msa1439060:intron 50.0%
!! TTTTGGAGGAAGGAAGACCG+GGG - tig0028698:49309-49328 Msa1439060:intron 50.0%
GTGCCTTCCGTTAGTCAGTT+TGG - tig0028698:49619-49638 Msa1439060:intron 50.0%
GCCAGCACATAGGTAAAGTC+TGG + tig0028698:50052-50071 None:intergenic 50.0%
TCAGGAGGGATCTCAAACTG+AGG + tig0028698:50164-50183 None:intergenic 50.0%
ATTCTGAACGGCCCTGAAGT+AGG - tig0028698:50332-50351 Msa1439060:intron 50.0%
AACGGCCCTGAAGTAGGATT+GGG - tig0028698:50338-50357 Msa1439060:intron 50.0%
!! GGGCTTGGTGCGAAATGTGA+TGG - tig0028698:49050-49069 Msa1439060:intron 55.0%
TGTTTAAGCTCGCGAGGAGG+GGG - tig0028698:49078-49097 Msa1439060:intron 55.0%
GCGCCAAACTGACTAACGGA+AGG + tig0028698:49625-49644 None:intergenic 55.0%
GAACGGCCCTGAAGTAGGAT+TGG - tig0028698:50337-50356 Msa1439060:intron 55.0%
TCTGGTGTGCGAGACATGTC+TGG + tig0028698:50493-50512 None:intergenic 55.0%
GGCTGCAAGGACGCACAAAG+TGG + tig0028698:48294-48313 None:intergenic 60.0%
!! GTAGTCATCGGTGGGCTGCA+AGG + tig0028698:48307-48326 None:intergenic 60.0%
GGAGGAAGGAAGACCGGGGT+TGG - tig0028698:49313-49332 Msa1439060:intron 65.0%
Chromosome Type Strat End Strand Name
tig0028698 gene 46547 51028 46547 ID=Msa1439060;Name=Msa1439060
tig0028698 mRNA 46547 51028 46547 ID=Msa1439060-mRNA-1;Parent=Msa1439060;Name=Msa1439060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=465|0.85|0.87|1|1|1|8|269|412
tig0028698 exon 46547 46925 46547 ID=Msa1439060-mRNA-1:exon:11591;Parent=Msa1439060-mRNA-1
tig0028698 exon 47195 47267 47195 ID=Msa1439060-mRNA-1:exon:11590;Parent=Msa1439060-mRNA-1
tig0028698 exon 47373 47573 47373 ID=Msa1439060-mRNA-1:exon:11589;Parent=Msa1439060-mRNA-1
tig0028698 exon 48161 48302 48161 ID=Msa1439060-mRNA-1:exon:11588;Parent=Msa1439060-mRNA-1
tig0028698 exon 48406 48630 48406 ID=Msa1439060-mRNA-1:exon:11587;Parent=Msa1439060-mRNA-1
tig0028698 exon 49112 49263 49112 ID=Msa1439060-mRNA-1:exon:11586;Parent=Msa1439060-mRNA-1
tig0028698 exon 49642 49759 49642 ID=Msa1439060-mRNA-1:exon:11585;Parent=Msa1439060-mRNA-1
tig0028698 exon 50346 51028 50346 ID=Msa1439060-mRNA-1:exon:11584;Parent=Msa1439060-mRNA-1
tig0028698 five_prime_UTR 50564 51028 50564 ID=Msa1439060-mRNA-1:five_prime_utr;Parent=Msa1439060-mRNA-1
tig0028698 CDS 50346 50563 50346 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 49642 49759 49642 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 49112 49263 49112 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 48406 48630 48406 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 48161 48302 48161 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 47373 47573 47373 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 47195 47267 47195 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 CDS 46816 46925 46816 ID=Msa1439060-mRNA-1:cds;Parent=Msa1439060-mRNA-1
tig0028698 three_prime_UTR 46547 46815 46547 ID=Msa1439060-mRNA-1:three_prime_utr;Parent=Msa1439060-mRNA-1
Gene Sequence

>Msa1439060

ATGAAGATAGGTAGGGTGGGATTAAGGGTGATGATGGTTGCATTGATGATGATGATGTTAAACTTGCCTTCTTGTTCAGCTTGGTTTGGTAATAAACGCAAAAGTGGAAGAAACTCAATTTTACCAGGTGAAGCCATGTCTTCAAGACCAAGTCTCATGAACCATGCTGCTGGTTCCTCAATTGTGATCCCTATTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAACATAGGCCAACCACCAAGGCCCTATTTTCTTGATGTTGACACTGGTAGCGAACTCACATGGCTCCAATGTGATGCTCCTTGTACCCAATGTTCTGAGCCCACCGATGACTACACATGTGAAGACCCTAATCAATGTGACTATGAAATTAAGTATGCTGATCAATACTCAACCCTTGGTGTACTTCTAAATGATGTTTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTAGAATGGCACTTGGATGTGGATATGACCAGATATTTTCACCTTCAACTTACCACCCTTTAGATGGAATACTTGGACTTGGAAGGGGAAAGGCCAGCTTGATATCACAGTTGAATAGTCAGGGCTTGGTGCGAAATGTGATGGGACATTGTTTAAGCTCGCGAGGAGGGGGATACATCTTCTTTGGAAATGCTTATGATTCTTCTCGAATGAGTTGGACTCCAATTTCATCAATCGATTCGGGAAAACATTACTCTGCAGGACCAGCTGAACTTGTTTTTGGAGGAAGGAAGACCGGGGTTGGAAGTTTAAATATTATCTTTGACACTGGAAGTTCCTATACATACTTCAACTCTCAGGCTTACCAAGCAATGATTTCTTTGCTGAATAAGGAATTACATAGAAAGCCAATAAAAGCAGCACCTGATGACCAGACTTTACCTATGTGCTGGCATGGTAAAAGACCTTTCAGAAGCATAAATGAAGTGAAGAAATACTTCAAGCCACTAACACTTAGTTTCACCAATGGTGGAAGAGTTAAACCTCAGTTTGAGATCCCTCCTGAAGCTTATCTTATAATATCAAATATGGGAAATGTTTGTCTAGGCATTCTGAACGGCCCTGAAGTAGGATTGGGTGAACTGAACCTAATTGGAGACATATCCATGCTAGACAAAGTGATGGTATTCGACAACGAGAAGCAGTTCATTGGATGGGGACCTGCAGATTGCAATAGTATTCCAAAATCCAGAGATTTCAGTTTATGA
Protein sequence

>Msa1439060

MKIGRVGLRVMMVALMMMMLNLPSCSAWFGNKRKSGRNSILPGEAMSSRPSLMNHAAGSSIVIPIYGNVYPVGFYNVTLNIGQPPRPYFLDVDTGSELTWLQCDAPCTQCSEPTDDYTCEDPNQCDYEIKYADQYSTLGVLLNDVYLLNFTNGVQLKVRMALGCGYDQIFSPSTYHPLDGILGLGRGKASLISQLNSQGLVRNVMGHCLSSRGGGYIFFGNAYDSSRMSWTPISSIDSGKHYSAGPAELVFGGRKTGVGSLNIIFDTGSSYTYFNSQAYQAMISLLNKELHRKPIKAAPDDQTLPMCWHGKRPFRSINEVKKYFKPLTLSFTNGGRVKPQFEIPPEAYLIISNMGNVCLGILNGPEVGLGELNLIGDISMLDKVMVFDNEKQFIGWGPADCNSIPKSRDFSL*