AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619380 MtrunA17_Chr8g0384731 91.972 436 10 2 1 412 1 435 0.0 814
Msa0619380 MtrunA17_Chr3g0130741 67.056 428 101 4 24 412 19 445 0.0 574
Msa0619380 MtrunA17_Chr1g0159791 51.444 381 154 6 54 406 37 414 4.94e-128 375
Msa0619380 MtrunA17_Chr4g0010951 45.368 421 167 8 47 407 34 451 6.15e-115 343
Msa0619380 MtrunA17_Chr6g0484731 43.158 380 174 10 59 401 176 550 3.97e-89 280
Msa0619380 MtrunA17_Chr3g0078321 37.306 386 195 14 59 408 45 419 1.33e-75 241
Msa0619380 MtrunA17_Chr4g0010941 47.881 236 92 3 199 405 2 235 1.35e-71 224
Msa0619380 MtrunA17_Chr7g0221681 27.230 426 231 15 39 409 40 441 4.86e-29 118
Msa0619380 MtrunA17_Chr7g0249451 26.914 405 222 15 59 409 54 438 4.48e-28 115
Msa0619380 MtrunA17_Chr4g0053721 27.174 368 219 14 73 404 79 433 2.74e-26 111
Msa0619380 MtrunA17_Chr1g0179751 23.174 397 224 14 73 409 107 482 3.33e-26 110
Msa0619380 MtrunA17_Chr2g0320621 25.130 386 216 15 70 402 73 438 9.68e-26 108
Msa0619380 MtrunA17_Chr5g0401601 25.280 447 264 19 10 404 13 441 1.48e-25 108
Msa0619380 MtrunA17_Chr7g0265331 23.650 389 217 14 70 402 77 441 2.95e-24 104
Msa0619380 MtrunA17_Chr5g0406001 27.226 393 214 17 63 408 106 473 3.29e-24 104
Msa0619380 MtrunA17_Chr4g0027681 24.607 382 216 15 73 402 76 437 7.80e-24 103
Msa0619380 MtrunA17_Chr8g0371371 26.794 418 241 18 37 411 78 473 1.37e-22 99.8
Msa0619380 MtrunA17_Chr1g0189381 25.000 404 232 16 59 409 52 437 1.35e-21 96.7
Msa0619380 MtrunA17_Chr8g0386441 25.127 394 226 15 54 404 65 432 2.23e-21 95.5
Msa0619380 MtrunA17_Chr8g0352671 24.936 393 213 14 60 404 81 439 2.37e-21 95.5
Msa0619380 MtrunA17_Chr5g0425141 24.548 387 231 14 66 411 94 460 8.01e-21 94.4
Msa0619380 MtrunA17_Chr2g0311451 24.332 374 215 14 72 401 86 435 1.46e-19 90.1
Msa0619380 MtrunA17_Chr2g0333991 23.592 373 217 14 72 400 86 434 1.85e-19 89.7
Msa0619380 MtrunA17_Chr3g0124421 24.468 376 208 14 79 404 104 453 1.19e-18 87.8
Msa0619380 MtrunA17_Chr8g0371351 24.760 416 239 16 35 404 65 452 4.29e-18 86.3
Msa0619380 MtrunA17_Chr3g0130931 26.817 399 200 24 59 404 92 451 1.01e-17 84.7
Msa0619380 MtrunA17_Chr8g0352661 25.000 388 222 16 60 404 78 439 1.15e-17 84.7
Msa0619380 MtrunA17_Chr2g0310831 24.872 390 222 18 54 401 80 440 1.39e-17 84.3
Msa0619380 MtrunA17_Chr2g0307991 25.000 376 202 15 75 401 60 404 1.62e-17 84.0
Msa0619380 MtrunA17_Chr5g0419291 25.737 373 204 17 73 401 85 428 5.09e-17 82.4
Msa0619380 MtrunA17_Chr2g0308001 23.568 454 241 20 9 404 6 411 3.79e-15 77.0
Msa0619380 MtrunA17_Chr5g0395911 24.603 378 217 15 68 402 62 414 3.97e-15 76.6
Msa0619380 MtrunA17_Chr2g0310821 24.566 403 233 17 38 402 74 443 4.30e-15 76.6
Msa0619380 MtrunA17_Chr3g0099891 26.341 410 231 22 35 401 73 454 1.94e-14 74.7
Msa0619380 MtrunA17_Chr5g0442921 26.087 391 206 18 73 404 190 556 2.54e-14 74.7
Msa0619380 MtrunA17_Chr1g0165201 25.135 370 209 14 73 401 127 469 3.68e-14 73.9
Msa0619380 MtrunA17_Chr1g0179091 23.035 369 240 12 46 401 29 366 4.41e-14 73.2
Msa0619380 MtrunA17_Chr3g0110191 24.074 378 216 14 77 406 89 443 6.01e-14 73.2
Msa0619380 MtrunA17_Chr3g0087851 23.256 387 213 15 70 404 85 439 1.86e-13 71.6
Msa0619380 MtrunA17_Chr6g0484901 24.932 369 193 18 79 401 161 491 2.37e-13 71.6
Msa0619380 MtrunA17_Chr3g0099901 25.867 375 216 15 67 402 135 486 2.41e-13 71.6
Msa0619380 MtrunA17_Chr5g0434411 22.917 384 217 12 77 406 84 442 2.44e-13 71.2
Msa0619380 MtrunA17_Chr1g0212321 24.202 376 204 15 73 401 145 486 3.91e-13 70.9
Msa0619380 MtrunA17_Chr5g0415951 24.672 381 221 18 61 401 80 434 5.95e-13 70.1
Msa0619380 MtrunA17_Chr4g0023351 32.022 178 87 8 59 209 46 216 1.19e-12 68.2
Msa0619380 MtrunA17_Chr2g0291201 24.211 380 210 17 73 402 101 452 1.21e-12 69.3
Msa0619380 MtrunA17_Chr5g0395931 23.797 374 226 14 68 402 83 436 2.29e-12 68.2
Msa0619380 MtrunA17_Chr6g0486981 22.427 379 217 15 75 404 89 439 2.70e-12 68.2
Msa0619380 MtrunA17_Chr3g0095891 24.130 431 246 20 32 404 54 461 2.81e-12 68.2
Msa0619380 MtrunA17_Chr7g0275731 25.240 416 234 19 32 402 102 485 7.22e-12 67.0
Msa0619380 MtrunA17_Chr8g0390761 23.514 370 207 16 77 402 119 456 2.45e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619380 AT4G33490.2 58.095 420 137 7 11 404 8 414 8.70e-167 474
Msa0619380 AT4G33490.1 58.163 392 125 7 11 376 5 383 2.34e-151 434
Msa0619380 AT1G44130.1 50.131 381 158 8 55 407 29 405 1.82e-130 381
Msa0619380 AT1G77480.2 47.301 389 177 5 47 408 39 426 2.98e-124 367
Msa0619380 AT1G77480.1 47.150 386 176 5 47 405 39 423 1.52e-122 363
Msa0619380 AT1G49050.1 42.377 387 174 13 59 401 187 568 3.19e-85 271
Msa0619380 AT1G49050.2 41.892 370 170 12 74 401 29 395 1.81e-80 254
Msa0619380 AT1G49050.3 40.293 273 122 9 59 292 187 457 1.46e-51 180
Msa0619380 AT1G65240.1 26.750 400 223 14 59 409 56 434 5.18e-33 129
Msa0619380 AT5G43100.2 28.307 378 210 15 65 404 66 420 2.46e-32 127
Msa0619380 AT5G43100.1 28.307 378 210 15 65 404 66 420 1.05e-31 127
Msa0619380 AT3G02740.1 27.387 398 225 12 59 409 67 447 3.68e-31 124
Msa0619380 AT2G36670.2 25.815 399 225 13 56 402 79 458 4.47e-31 124
Msa0619380 AT1G05840.1 26.154 390 214 12 73 409 78 446 2.03e-29 119
Msa0619380 AT5G22850.1 26.161 409 231 14 48 403 52 442 3.44e-29 119
Msa0619380 AT2G36670.4 25.594 379 213 12 74 402 33 392 4.63e-29 118
Msa0619380 AT2G36670.3 25.594 379 213 12 74 402 33 392 4.63e-29 118
Msa0619380 AT2G36670.1 25.495 404 225 14 56 402 79 463 4.72e-29 119
Msa0619380 AT3G02740.2 26.684 386 221 11 69 409 4 372 4.95e-29 117
Msa0619380 AT5G36260.1 25.666 413 244 12 46 411 47 443 2.68e-28 116
Msa0619380 AT1G08210.4 25.185 405 227 13 52 402 93 475 6.24e-27 113
Msa0619380 AT1G08210.1 25.185 405 227 13 52 402 59 441 6.40e-27 112
Msa0619380 AT1G08210.3 25.185 405 227 13 52 402 107 489 6.52e-27 113
Msa0619380 AT3G50050.1 27.224 371 225 14 65 404 83 439 2.45e-25 108
Msa0619380 AT1G08210.2 25.000 432 221 17 52 402 59 468 1.01e-22 100
Msa0619380 AT3G25700.1 25.455 385 214 16 73 401 82 449 1.88e-21 96.3
Msa0619380 AT2G17760.1 24.505 404 243 14 37 401 69 449 2.65e-21 96.3
Msa0619380 AT5G10080.1 25.946 370 209 12 79 402 104 454 3.04e-21 96.3
Msa0619380 AT3G51330.3 26.260 377 212 17 72 402 98 454 7.93e-20 91.7
Msa0619380 AT3G51350.1 27.200 375 203 17 74 401 101 452 7.94e-20 92.0
Msa0619380 AT4G35880.1 27.105 380 214 17 69 407 100 457 9.25e-20 91.7
Msa0619380 AT3G51330.1 26.330 376 211 17 72 401 98 453 9.92e-20 91.7
Msa0619380 AT2G28010.1 26.110 383 228 18 47 404 42 394 2.07e-19 89.7
Msa0619380 AT2G28030.1 23.200 375 237 15 54 404 43 390 3.20e-17 83.2
Msa0619380 AT3G51340.1 26.121 379 213 16 72 401 99 459 3.50e-16 80.9
Msa0619380 AT2G28040.2 24.870 386 231 17 45 404 32 384 5.29e-16 79.7
Msa0619380 AT2G28040.1 24.870 386 231 17 45 404 41 393 5.80e-16 79.7
Msa0619380 AT3G51340.2 25.606 371 213 14 72 401 99 447 1.01e-15 79.3
Msa0619380 AT2G03200.1 23.798 416 222 20 45 404 85 461 2.02e-15 78.2
Msa0619380 AT1G66180.1 22.572 381 217 14 77 404 74 429 4.01e-15 77.4
Msa0619380 AT1G01300.1 27.005 374 199 17 73 401 140 484 3.11e-14 74.7
Msa0619380 AT3G59080.2 24.359 390 239 15 44 404 137 499 3.22e-14 74.7
Msa0619380 AT4G35880.2 26.648 349 193 17 69 376 100 426 3.55e-14 74.3
Msa0619380 AT3G51330.2 25.641 351 195 17 72 376 98 428 9.71e-14 73.2
Msa0619380 AT3G51360.7 22.164 379 219 16 72 402 2 352 4.58e-13 70.9
Msa0619380 AT3G51360.9 22.951 366 226 14 74 402 100 446 6.27e-13 70.9
Msa0619380 AT3G20015.1 25.135 370 208 16 73 401 129 470 8.14e-13 70.5
Msa0619380 AT3G51360.1 22.951 366 226 14 74 402 90 436 1.05e-12 70.1
Msa0619380 AT3G18490.1 23.925 372 209 19 73 401 160 500 2.67e-12 68.9
Msa0619380 AT2G42980.1 24.742 388 218 14 73 404 158 527 9.07e-12 67.0
Msa0619380 AT3G59080.1 23.389 419 243 15 44 404 137 535 1.04e-11 67.0
Msa0619380 AT3G51340.3 26.820 261 148 9 79 300 107 363 2.11e-11 65.5
Msa0619380 AT3G51340.4 26.523 279 157 11 79 316 107 378 2.30e-11 65.5

Find 149 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGTGATCCCTATTTA+TGG 0.123424 4_2:-70494967 Msa0619380:CDS
AAACTGAAATCTCTGGATTT+TGG 0.144007 4_2:+70491418 None:intergenic
AGATAGGTAGGGTGGGATTA+AGG 0.217206 4_2:-70495140 Msa0619380:CDS
TTTCTAAATGCAGCTGAATA+AGG 0.250514 4_2:-70492163 Msa0619380:intron
GGATAAACGTTGCCATAAAT+AGG 0.257987 4_2:+70494955 None:intergenic
AACGAATCGATTGATGAAAT+TGG 0.264253 4_2:+70493004 None:intergenic
ATTTCATAGTCACATTGATT+AGG 0.289901 4_2:+70493815 None:intergenic
CACCCTTTAGATGGAATACT+TGG 0.291237 4_2:-70493172 Msa0619380:CDS
TTACCAAGCAATGATTTCTT+TGG 0.294065 4_2:-70492761 Msa0619380:intron
AGTGTCAACATCAAGAAAAT+AGG 0.297686 4_2:+70494298 None:intergenic
TTTCATAGTCACATTGATTA+GGG 0.312831 4_2:+70493816 None:intergenic
AGCATTGTGTAGAGTATATT+GGG 0.314014 4_2:-70491242 Msa0619380:three_prime_UTR
TCAACTTACCACCCTTTAGA+TGG 0.325308 4_2:-70493181 Msa0619380:CDS
CTAAATTCTCACCTCCAATT+AGG 0.327781 4_2:+70491782 None:intergenic
AAGCATTGTGTAGAGTATAT+TGG 0.329838 4_2:-70491243 Msa0619380:three_prime_UTR
TTGGGTGAACTGAACCTAAT+TGG 0.334057 4_2:-70491796 Msa0619380:CDS
TCTTTAAAAGTACCTAATTA+AGG 0.339236 4_2:-70491391 Msa0619380:three_prime_UTR
TTTAAATTATTGATTCTTGT+TGG 0.351690 4_2:+70495301 None:intergenic
CCTTCTTGTTCAGCTTGGTT+TGG 0.352799 4_2:-70495078 Msa0619380:CDS
GTCATATGCATGCCTTAATT+AGG 0.358204 4_2:+70491379 None:intergenic
GATAGGTAGGGTGGGATTAA+GGG 0.398450 4_2:-70495139 Msa0619380:CDS
AGATCATAAACTGAAATCTC+TGG 0.399104 4_2:+70491411 None:intergenic
TGAATCATTAGATTATTTCC+TGG 0.405081 4_2:+70495600 None:intergenic
AGTTCACCCAATCCTACTTC+AGG 0.414059 4_2:+70491808 None:intergenic
GGAGCAGGAAAGAAGTTTCC+AGG 0.414558 4_2:-70495618 None:intergenic
AAGTTGAAGGTGAAAATATC+TGG 0.417456 4_2:+70493197 None:intergenic
GTGCCATTCTAACTTTAAGT+TGG 0.419171 4_2:+70493717 None:intergenic
AGAAGAAGATGAAGATAGGT+AGG 0.420924 4_2:-70495152 Msa0619380:exon
GACAACGAGAAGCAGTTCAT+TGG 0.422112 4_2:-70491469 Msa0619380:CDS
GATAAACGTTGCCATAAATA+GGG 0.423110 4_2:+70494956 None:intergenic
ATGGCAACGTTTATCCTGTT+GGG 0.427167 4_2:-70494948 Msa0619380:intron
GTGTCAACATCAAGAAAATA+GGG 0.431013 4_2:+70494299 None:intergenic
ATAGGTAAAGTCTGGTCATC+AGG 0.433183 4_2:+70492111 None:intergenic
ACTTGCCTTCTTGTTCAGCT+TGG 0.434467 4_2:-70495083 Msa0619380:CDS
AACAAGAAGAAGATGAAGAT+AGG 0.439947 4_2:-70495156 Msa0619380:exon
TTAAATATTATCTTTGACAC+TGG 0.441413 4_2:-70492814 Msa0619380:CDS
GAAGATGAAGATAGGTAGGG+TGG 0.442669 4_2:-70495148 Msa0619380:exon
CTGAGAGTTGAAGTATGTAT+AGG 0.443665 4_2:+70492786 None:intergenic
GATATTATAAGATAAGCTTC+AGG 0.447328 4_2:+70491973 None:intergenic
GATATCACAGTTGAATAGTC+AGG 0.453876 4_2:-70493125 Msa0619380:CDS
AAGTTGAAAAGTTGTAGAAA+AGG 0.460593 4_2:+70495492 None:intergenic
TTGGTGAAACTAAGTGTTAG+TGG 0.461386 4_2:+70492030 None:intergenic
AGTCCAAGTATTCCATCTAA+AGG 0.461510 4_2:+70493169 None:intergenic
GGTGGGATTAAGGGTGATGA+TGG 0.463114 4_2:-70495130 Msa0619380:CDS
AACTTTAAGTTGGACTCCAT+TGG 0.463263 4_2:+70493727 None:intergenic
TATGGCAACGTTTATCCTGT+TGG 0.466319 4_2:-70494949 Msa0619380:CDS
GTTATTTGTTGCAAGAATAT+GGG 0.467337 4_2:-70491859 Msa0619380:intron
TTAGATGGAATACTTGGACT+TGG 0.471121 4_2:-70493166 Msa0619380:CDS
TGTACTAGTTCATGAAGAAA+AGG 0.472388 4_2:+70495335 None:intergenic
GAACGGCCCTGAAGTAGGAT+TGG 0.472405 4_2:-70491815 Msa0619380:CDS
GGAATACTATTGCAATCTGC+AGG 0.473909 4_2:+70491439 None:intergenic
GTCCAAGTATTCCATCTAAA+GGG 0.477058 4_2:+70493170 None:intergenic
TGAAAGAAACTGAAGGATAA+TGG 0.477507 4_2:+70495260 None:intergenic
ATTAATGCATATTATAGAGC+AGG 0.483123 4_2:-70491330 Msa0619380:three_prime_UTR
ATCGTATCACGTTAATTTGA+CGG 0.486448 4_2:-70491155 Msa0619380:three_prime_UTR
TAATATTACCTCAGAACATT+GGG 0.489036 4_2:+70494235 None:intergenic
TCCTCTATGATCTATAGTAA+TGG 0.492324 4_2:+70495181 None:intergenic
ACATCAAGAAAATAGGGCCT+TGG 0.492843 4_2:+70494305 None:intergenic
AATGAAATATCATACCCAAC+AGG 0.493100 4_2:+70494934 None:intergenic
GGAGGAAGGAAGACCGGGGT+TGG 0.493414 4_2:-70492841 Msa0619380:CDS
ACCTCAGAACATTGGGTACA+AGG 0.494290 4_2:+70494242 None:intergenic
CTTAAAGTTAGAATGGCACT+TGG 0.502205 4_2:-70493713 Msa0619380:CDS
GCCAGCACATAGGTAAAGTC+TGG 0.502564 4_2:+70492103 None:intergenic
AAGATGAAGATAGGTAGGGT+GGG 0.502567 4_2:-70495147 Msa0619380:CDS
AACGGCCCTGAAGTAGGATT+GGG 0.503963 4_2:-70491814 Msa0619380:CDS
GTTCACCCAATCCTACTTCA+GGG 0.504181 4_2:+70491809 None:intergenic
ATGATTCTTCTCGAATGAGT+TGG 0.504399 4_2:-70493030 Msa0619380:CDS
TACCATCACTTTGTCTAGCA+TGG 0.505530 4_2:+70491495 None:intergenic
CATACCTTGTGAGTAAGAAA+AGG 0.506186 4_2:-70495421 Msa0619380:five_prime_UTR
ACAGTTGAATAGTCAGGGCT+TGG 0.506595 4_2:-70493119 Msa0619380:CDS
ATTGGGGTAAGCTATTATGC+AGG 0.506850 4_2:-70491225 Msa0619380:three_prime_UTR
AGGTTTAACTCTTCCACCAT+TGG 0.508559 4_2:+70492011 None:intergenic
AGTCCAACTTAAAGTTAGAA+TGG 0.510476 4_2:-70493720 Msa0619380:CDS
TCAAGAAAATAGGGCCTTGG+TGG 0.511612 4_2:+70494308 None:intergenic
TACCTTCTCAACTTCACCAA+TGG 0.512014 4_2:-70493743 Msa0619380:CDS
CTATACATACTTCAACTCTC+AGG 0.516576 4_2:-70492785 Msa0619380:CDS
TGTTTAAGCTCGCGAGGAGG+GGG 0.519451 4_2:-70493076 Msa0619380:CDS
TGGGAGAGCGTGTGAATGAA+TGG 0.519940 4_2:+70495549 None:intergenic
ATGGAATACTTGGACTTGGA+AGG 0.520338 4_2:-70493162 Msa0619380:CDS
TTTGGTAATAAACGCAAAAG+TGG 0.521006 4_2:-70495060 Msa0619380:CDS
ATTCTGAACGGCCCTGAAGT+AGG 0.523129 4_2:-70491820 Msa0619380:CDS
TGGTGAATGAGCAAGTGTTA+AGG 0.528403 4_2:+70495569 None:intergenic
CGAGAAGCAGTTCATTGGAT+GGG 0.531219 4_2:-70491464 Msa0619380:CDS
CTTGAAGACATGGCTTCACC+TGG 0.531998 4_2:+70495021 None:intergenic
TCTAAAGGGTGGTAAGTTGA+AGG 0.532635 4_2:+70493184 None:intergenic
TGGAATACTTGGACTTGGAA+GGG 0.533058 4_2:-70493161 Msa0619380:CDS
TTCACATGTGTAGTCATCGG+TGG 0.533364 4_2:+70493841 None:intergenic
GAAAATAGGGCCTTGGTGGT+TGG 0.533650 4_2:+70494312 None:intergenic
GGGCTTGGTGCGAAATGTGA+TGG 0.536228 4_2:-70493104 Msa0619380:CDS
AGGGGAAAACATTACTCTGC+AGG 0.544182 4_2:-70492883 Msa0619380:CDS
TGATTCTTGTTGGAAAGAGT+TGG 0.546273 4_2:+70495311 None:intergenic
AATATGGGAAATGTTTGTCT+AGG 0.546632 4_2:-70491844 Msa0619380:CDS
ACCAGACTTTACCTATGTGC+TGG 0.546884 4_2:-70492104 Msa0619380:CDS
CTCCATTGGTGAAGTTGAGA+AGG 0.547745 4_2:+70493741 None:intergenic
ATAAACTCAACATTAGAAAG+TGG 0.548243 4_2:+70495364 None:intergenic
GGAATACTTGGACTTGGAAG+GGG 0.550065 4_2:-70493160 Msa0619380:CDS
GTAATATTACCTCAGAACAT+TGG 0.551100 4_2:+70494234 None:intergenic
AGAAACTGAAGGATAATGGT+GGG 0.551649 4_2:+70495264 None:intergenic
ACACTTAGTTTCACCAATGG+TGG 0.552466 4_2:-70492024 Msa0619380:CDS
ATAAATAGGGATCACAATTG+AGG 0.553125 4_2:+70494969 None:intergenic
AGTCTCATGAACCATGCTGC+TGG 0.557344 4_2:-70494994 Msa0619380:CDS
TCAGGAGGGATCTCAAACTG+AGG 0.558793 4_2:+70491991 None:intergenic
GAAGAAGATGAAGATAGGTA+GGG 0.561089 4_2:-70495151 Msa0619380:exon
GTCTTCACATGTGTAGTCAT+CGG 0.562506 4_2:+70493838 None:intergenic
GCTGATCAATACTCAACCCT+TGG 0.562559 4_2:-70493785 Msa0619380:CDS
TGACCAAAGAAATCATTGCT+TGG 0.564667 4_2:+70492758 None:intergenic
ACTTCATTTATGCTTCTGAA+AGG 0.566258 4_2:+70492069 None:intergenic
ATATCACAGTTGAATAGTCA+GGG 0.567767 4_2:-70493124 Msa0619380:CDS
GAGACTTGGTCTTGAAGACA+TGG 0.568180 4_2:+70495011 None:intergenic
ATTGTTTAAGCTCGCGAGGA+GGG 0.569291 4_2:-70493078 Msa0619380:CDS
ACGAGAAGCAGTTCATTGGA+TGG 0.576343 4_2:-70491465 Msa0619380:CDS
TCACATGTGTAGTCATCGGT+GGG 0.576365 4_2:+70493842 None:intergenic
TATAATGTTACTCTCAACAT+AGG 0.586798 4_2:-70494335 Msa0619380:CDS
GCAGCATGGTTCATGAGACT+TGG 0.589743 4_2:+70494997 None:intergenic
CATTGTTTAAGCTCGCGAGG+AGG 0.594028 4_2:-70493079 Msa0619380:CDS
GGCTTGGTGCGAAATGTGAT+GGG 0.595102 4_2:-70493103 Msa0619380:CDS
CATATTATAGAGCAGGGTGA+TGG 0.595503 4_2:-70491323 Msa0619380:three_prime_UTR
ATTCAACTGTGATATCAAGC+TGG 0.597014 4_2:+70493132 None:intergenic
GAGAAGCAGTTCATTGGATG+GGG 0.597082 4_2:-70491463 Msa0619380:CDS
TCCATTACTATAGATCATAG+AGG 0.597908 4_2:-70495182 Msa0619380:five_prime_UTR
CCAAACCAAGCTGAACAAGA+AGG 0.598844 4_2:+70495078 None:intergenic
TTAATGCATATTATAGAGCA+GGG 0.602995 4_2:-70491329 Msa0619380:three_prime_UTR
ACTTGGACTTGGAAGGGGAA+AGG 0.604303 4_2:-70493155 Msa0619380:CDS
AAGAAACTGAAGGATAATGG+TGG 0.604920 4_2:+70495263 None:intergenic
TTGGGGTAAGCTATTATGCA+GGG 0.608982 4_2:-70491224 Msa0619380:three_prime_UTR
CTAACACTTAGTTTCACCAA+TGG 0.609380 4_2:-70492027 Msa0619380:CDS
ACTTTACCTATGTGCTGGCA+TGG 0.609706 4_2:-70492099 Msa0619380:CDS
TTGTTTAAGCTCGCGAGGAG+GGG 0.611048 4_2:-70493077 Msa0619380:CDS
ATCATTTAGAAGTACACCAA+GGG 0.613371 4_2:+70493769 None:intergenic
GGACATTGTTTAAGCTCGCG+AGG 0.614419 4_2:-70493082 Msa0619380:CDS
AATATTTAAACTTCCAACCC+CGG 0.615370 4_2:+70492828 None:intergenic
TTAAAGTTAGAATGGCACTT+GGG 0.620505 4_2:-70493712 Msa0619380:intron
ATTATAAGATAAGCTTCAGG+AGG 0.624826 4_2:+70491976 None:intergenic
ATCTTTGCAAGATTCATGTG+TGG 0.624858 4_2:-70495445 Msa0619380:five_prime_UTR
TCCTTGTACCCAATGTTCTG+AGG 0.637225 4_2:-70494243 Msa0619380:intron
ATCCATGCTAGACAAAGTGA+TGG 0.638414 4_2:-70491497 Msa0619380:CDS
GAAACTGAAGGATAATGGTG+GGG 0.638757 4_2:+70495265 None:intergenic
ACACTGGTAGCGAACTCACA+TGG 0.642611 4_2:-70494280 Msa0619380:CDS
GGTGAACTGAACCTAATTGG+AGG 0.647086 4_2:-70491793 Msa0619380:intron
CAAGTATTCCATCTAAAGGG+TGG 0.648915 4_2:+70493173 None:intergenic
GGGTACAAGGAGCATCACAT+TGG 0.654731 4_2:+70494255 None:intergenic
GTTTGTCTAGGCATTCTGAA+CGG 0.654989 4_2:-70491832 Msa0619380:CDS
GTATGGATGAAAGAAACTGA+AGG 0.655555 4_2:+70495253 None:intergenic
CATCATTTAGAAGTACACCA+AGG 0.656080 4_2:+70493768 None:intergenic
CAATTGAGGAACCAGCAGCA+TGG 0.660713 4_2:+70494983 None:intergenic
AATTTGACGGCATTAGCACG+AGG 0.660806 4_2:-70491142 None:intergenic
GCATTGTGTAGAGTATATTG+GGG 0.685659 4_2:-70491241 Msa0619380:three_prime_UTR
TCAACATAGGCCAACCACCA+AGG 0.689202 4_2:-70494322 Msa0619380:CDS
TTATAAGATAAGCTTCAGGA+GGG 0.705622 4_2:+70491977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATAAAT+GGG + chr4_2:70491231-70491250 None:intergenic 0.0%
!! ATAATAATAATAATAATAAA+TGG + chr4_2:70491232-70491251 None:intergenic 0.0%
!!! TTTATTTTTACTATAATGTA+TGG + chr4_2:70491525-70491544 None:intergenic 10.0%
!! ATTAAAATTCAATTCATAAA+AGG + chr4_2:70491953-70491972 None:intergenic 10.0%
!!! TGAATTGAATTTTAATTTTT+TGG - chr4_2:70491957-70491976 Msa0619380:intron 10.0%
!!! AAATTGATATTCATTTTTAT+TGG - chr4_2:70492215-70492234 Msa0619380:intron 10.0%
!!! ATTTATATTATTTTCTAGAA+TGG + chr4_2:70494325-70494344 None:intergenic 10.0%
!!! ATTAATAATTTCTAGTATAA+AGG + chr4_2:70494543-70494562 None:intergenic 10.0%
!! TTATACTAGAAATTATTAAT+TGG - chr4_2:70494543-70494562 Msa0619380:intron 10.0%
!!! TTTAAATTATTGATTCTTGT+TGG + chr4_2:70491460-70491479 None:intergenic 15.0%
!! ATATTATATGCAATTTATGT+AGG + chr4_2:70492784-70492803 None:intergenic 15.0%
!! ATTAACATAAGATATAATCA+AGG - chr4_2:70494258-70494277 Msa0619380:CDS 15.0%
!!! AATATTTTGTGATTTCAAAA+TGG - chr4_2:70494350-70494369 Msa0619380:intron 15.0%
!! TAAGTATTTAATGATGAAAT+TGG + chr4_2:70494479-70494498 None:intergenic 15.0%
!! TTGTTAACTGTTATAATAAA+TGG - chr4_2:70494840-70494859 Msa0619380:intron 15.0%
!! ATGATATTTCATTTCTTTCT+AGG - chr4_2:70491834-70491853 Msa0619380:CDS 20.0%
!!! TTTCTTGTTTATCAATTCTT+AGG - chr4_2:70492066-70492085 Msa0619380:CDS 20.0%
!!! GGTTTTCTTTTATTTAATTG+TGG + chr4_2:70492171-70492190 None:intergenic 20.0%
!!! ACAGACAAATGTATTTTTTT+GGG - chr4_2:70492238-70492257 Msa0619380:intron 20.0%
!! ATGGTTTATATAAGTGAATT+AGG - chr4_2:70493211-70493230 Msa0619380:CDS 20.0%
!! AATAGATATGACATAAATTG+TGG + chr4_2:70493477-70493496 None:intergenic 20.0%
!! TTAAATATTATCTTTGACAC+TGG - chr4_2:70493944-70493963 Msa0619380:intron 20.0%
!!! GTATTTTTAGTTAACTAGTT+TGG - chr4_2:70494192-70494211 Msa0619380:intron 20.0%
!! GCATTTAGAAAATTAACAAA+AGG + chr4_2:70494586-70494605 None:intergenic 20.0%
!! ATATTATGTTATGTAAGTGT+TGG - chr4_2:70495217-70495236 Msa0619380:five_prime_UTR 20.0%
!!! TCTTTAAAAGTACCTAATTA+AGG - chr4_2:70495367-70495386 Msa0619380:five_prime_UTR 20.0%
!!! GTTTTATTACTTTATCTTCA+TGG - chr4_2:70495467-70495486 Msa0619380:five_prime_UTR 20.0%
! TGAATCATTAGATTATTTCC+TGG + chr4_2:70491161-70491180 None:intergenic 25.0%
! AAGTTGAAAAGTTGTAGAAA+AGG + chr4_2:70491269-70491288 None:intergenic 25.0%
! ATAAACTCAACATTAGAAAG+TGG + chr4_2:70491397-70491416 None:intergenic 25.0%
! AATTTCAAAGCAACAGAAAA+GGG + chr4_2:70492092-70492111 None:intergenic 25.0%
! AAATTTCAAAGCAACAGAAA+AGG + chr4_2:70492093-70492112 None:intergenic 25.0%
!!! GACAGACAAATGTATTTTTT+TGG - chr4_2:70492237-70492256 Msa0619380:intron 25.0%
!!! TGTATTTTTTTGGGACATTT+CGG - chr4_2:70492247-70492266 Msa0619380:intron 25.0%
! ATTAGAATATCAATTTCGTG+AGG + chr4_2:70492368-70492387 None:intergenic 25.0%
! TATAATGTTACTCTCAACAT+AGG - chr4_2:70492423-70492442 Msa0619380:intron 25.0%
! TAATATTACCTCAGAACATT+GGG + chr4_2:70492526-70492545 None:intergenic 25.0%
!!! ATGTGCTGATTATAATTGAT+TGG - chr4_2:70492709-70492728 Msa0619380:intron 25.0%
! CAGCAAAAAAAAAATTACTC+TGG - chr4_2:70492739-70492758 Msa0619380:intron 25.0%
! CAAAAAAAAAATTACTCTGG+TGG - chr4_2:70492742-70492761 Msa0619380:intron 25.0%
!! TTTCATAGTCACATTGATTA+GGG + chr4_2:70492945-70492964 None:intergenic 25.0%
!! ATTTCATAGTCACATTGATT+AGG + chr4_2:70492946-70492965 None:intergenic 25.0%
! AATACAAATACAAACCAGAA+TGG - chr4_2:70493192-70493211 Msa0619380:CDS 25.0%
! TTCACTTATATAAACCATTC+TGG + chr4_2:70493209-70493228 None:intergenic 25.0%
!! TGATTACATTACTTCTAAGA+GGG + chr4_2:70494050-70494069 None:intergenic 25.0%
! TTGATTACATTACTTCTAAG+AGG + chr4_2:70494051-70494070 None:intergenic 25.0%
! GTAATGTAATCAAGTAGTTA+TGG - chr4_2:70494058-70494077 Msa0619380:intron 25.0%
! TCAAGTAGTTATGGTTATTA+TGG - chr4_2:70494067-70494086 Msa0619380:intron 25.0%
! ATTATGTGTATTACACAACA+GGG + chr4_2:70494392-70494411 None:intergenic 25.0%
! AATTATGTGTATTACACAAC+AGG + chr4_2:70494393-70494412 None:intergenic 25.0%
! ACTAGAAATTATTAATTGGC+AGG - chr4_2:70494547-70494566 Msa0619380:intron 25.0%
! GATATTATAAGATAAGCTTC+AGG + chr4_2:70494788-70494807 None:intergenic 25.0%
!! TGTTATTTGTTGCAAGAATA+TGG - chr4_2:70494898-70494917 Msa0619380:intron 25.0%
!! GTTATTTGTTGCAAGAATAT+GGG - chr4_2:70494899-70494918 Msa0619380:intron 25.0%
! ATTAATGCATATTATAGAGC+AGG - chr4_2:70495428-70495447 Msa0619380:five_prime_UTR 25.0%
! TTAATGCATATTATAGAGCA+GGG - chr4_2:70495429-70495448 Msa0619380:five_prime_UTR 25.0%
! TTATCCTTTTCTTACTCACA+AGG + chr4_2:70491344-70491363 None:intergenic 30.0%
TGTACTAGTTCATGAAGAAA+AGG + chr4_2:70491426-70491445 None:intergenic 30.0%
TGAAAGAAACTGAAGGATAA+TGG + chr4_2:70491501-70491520 None:intergenic 30.0%
TCCATTACTATAGATCATAG+AGG - chr4_2:70491576-70491595 Msa0619380:intron 30.0%
TCCTCTATGATCTATAGTAA+TGG + chr4_2:70491580-70491599 None:intergenic 30.0%
AACAAGAAGAAGATGAAGAT+AGG - chr4_2:70491602-70491621 Msa0619380:intron 30.0%
! TTTGGTAATAAACGCAAAAG+TGG - chr4_2:70491698-70491717 Msa0619380:intron 30.0%
ATAAATAGGGATCACAATTG+AGG + chr4_2:70491792-70491811 None:intergenic 30.0%
TCAATTGTGATCCCTATTTA+TGG - chr4_2:70491791-70491810 Msa0619380:intron 30.0%
GATAAACGTTGCCATAAATA+GGG + chr4_2:70491805-70491824 None:intergenic 30.0%
AATGAAATATCATACCCAAC+AGG + chr4_2:70491827-70491846 None:intergenic 30.0%
AGTTTAAGGGGTTAAAAGAT+CGG + chr4_2:70492324-70492343 None:intergenic 30.0%
CTGCAAAAGTTGAAATTTAC+GGG + chr4_2:70492399-70492418 None:intergenic 30.0%
CCTGCAAAAGTTGAAATTTA+CGG + chr4_2:70492400-70492419 None:intergenic 30.0%
GTGTCAACATCAAGAAAATA+GGG + chr4_2:70492462-70492481 None:intergenic 30.0%
AGTGTCAACATCAAGAAAAT+AGG + chr4_2:70492463-70492482 None:intergenic 30.0%
! TATTTTCTTGATGTTGACAC+TGG - chr4_2:70492462-70492481 Msa0619380:intron 30.0%
GTAATATTACCTCAGAACAT+TGG + chr4_2:70492527-70492546 None:intergenic 30.0%
! ATCATTTAGAAGTACACCAA+GGG + chr4_2:70492992-70493011 None:intergenic 30.0%
AGTCCAACTTAAAGTTAGAA+TGG - chr4_2:70493038-70493057 Msa0619380:CDS 30.0%
TTAAAGTTAGAATGGCACTT+GGG - chr4_2:70493046-70493065 Msa0619380:CDS 30.0%
ATATTTCAAGAGAACATGCA+AGG + chr4_2:70493084-70493103 None:intergenic 30.0%
TTTGTGGAATGGTAAAACTT+AGG + chr4_2:70493371-70493390 None:intergenic 30.0%
TCAAATAGTAGATCATGCAT+TGG + chr4_2:70493396-70493415 None:intergenic 30.0%
TCAAACATGTCATTGTTGAA+AGG + chr4_2:70493440-70493459 None:intergenic 30.0%
TTGATTCCAATATACAGATG+TGG - chr4_2:70493532-70493551 Msa0619380:intron 30.0%
TCATATCCACATCTGTATAT+TGG + chr4_2:70493541-70493560 None:intergenic 30.0%
AAGTTGAAGGTGAAAATATC+TGG + chr4_2:70493564-70493583 None:intergenic 30.0%
ATATCACAGTTGAATAGTCA+GGG - chr4_2:70493634-70493653 Msa0619380:intron 30.0%
AACGAATCGATTGATGAAAT+TGG + chr4_2:70493757-70493776 None:intergenic 30.0%
TGTCACTAGTATAATACATG+TGG + chr4_2:70493806-70493825 None:intergenic 30.0%
!! TCTTTTATGTTGTTTGTGTC+AGG - chr4_2:70493855-70493874 Msa0619380:intron 30.0%
!! CTTTTATGTTGTTTGTGTCA+GGG - chr4_2:70493856-70493875 Msa0619380:intron 30.0%
!! TTTTATGTTGTTTGTGTCAG+GGG - chr4_2:70493857-70493876 Msa0619380:intron 30.0%
AATATTTAAACTTCCAACCC+CGG + chr4_2:70493933-70493952 None:intergenic 30.0%
TTACCAAGCAATGATTTCTT+TGG - chr4_2:70493997-70494016 Msa0619380:intron 30.0%
! ATTACATTACTTCTAAGAGG+GGG + chr4_2:70494048-70494067 None:intergenic 30.0%
! GATTACATTACTTCTAAGAG+GGG + chr4_2:70494049-70494068 None:intergenic 30.0%
TTTCAGTTTCAGTATATCCA+AGG - chr4_2:70494289-70494308 Msa0619380:CDS 30.0%
TTTCTAAATGCAGCTGAATA+AGG - chr4_2:70494595-70494614 Msa0619380:intron 30.0%
ACTTCATTTATGCTTCTGAA+AGG + chr4_2:70494692-70494711 None:intergenic 30.0%
TTATAAGATAAGCTTCAGGA+GGG + chr4_2:70494784-70494803 None:intergenic 30.0%
ATTATAAGATAAGCTTCAGG+AGG + chr4_2:70494785-70494804 None:intergenic 30.0%
AATATGGGAAATGTTTGTCT+AGG - chr4_2:70494914-70494933 Msa0619380:intron 30.0%
! TTAGCTACATTGTCGTATTT+TGG - chr4_2:70494995-70495014 Msa0619380:CDS 30.0%
! AAACTGAAATCTCTGGATTT+TGG + chr4_2:70495343-70495362 None:intergenic 30.0%
AGATCATAAACTGAAATCTC+TGG + chr4_2:70495350-70495369 None:intergenic 30.0%
! AAGCATTGTGTAGAGTATAT+TGG - chr4_2:70495515-70495534 Msa0619380:five_prime_UTR 30.0%
AGCATTGTGTAGAGTATATT+GGG - chr4_2:70495516-70495535 Msa0619380:five_prime_UTR 30.0%
! ATCGTATCACGTTAATTTGA+CGG - chr4_2:70495603-70495622 Msa0619380:five_prime_UTR 30.0%
ATCTTTGCAAGATTCATGTG+TGG - chr4_2:70491313-70491332 Msa0619380:three_prime_UTR 35.0%
CATACCTTGTGAGTAAGAAA+AGG - chr4_2:70491337-70491356 Msa0619380:three_prime_UTR 35.0%
TGATTCTTGTTGGAAAGAGT+TGG + chr4_2:70491450-70491469 None:intergenic 35.0%
! AGAAACTGAAGGATAATGGT+GGG + chr4_2:70491497-70491516 None:intergenic 35.0%
! AAGAAACTGAAGGATAATGG+TGG + chr4_2:70491498-70491517 None:intergenic 35.0%
GTATGGATGAAAGAAACTGA+AGG + chr4_2:70491508-70491527 None:intergenic 35.0%
AGAAGAAGATGAAGATAGGT+AGG - chr4_2:70491606-70491625 Msa0619380:intron 35.0%
GAAGAAGATGAAGATAGGTA+GGG - chr4_2:70491607-70491626 Msa0619380:intron 35.0%
! GGAAGAAACTCAATTTTACC+AGG - chr4_2:70491719-70491738 Msa0619380:intron 35.0%
GGATAAACGTTGCCATAAAT+AGG + chr4_2:70491806-70491825 None:intergenic 35.0%
TGAGTATCCAAATTCATACC+AGG - chr4_2:70492030-70492049 Msa0619380:CDS 35.0%
AGAAAGTAATATTCCAGTCC+TGG + chr4_2:70492051-70492070 None:intergenic 35.0%
AAAACCTCTTCTGACATTGA+TGG - chr4_2:70492185-70492204 Msa0619380:intron 35.0%
AAACCTCTTCTGACATTGAT+GGG - chr4_2:70492186-70492205 Msa0619380:intron 35.0%
TTAACCCCTTAAACTCAAAC+CGG - chr4_2:70492329-70492348 Msa0619380:intron 35.0%
!! TTCAACCGGTTTGAGTTTAA+GGG + chr4_2:70492337-70492356 None:intergenic 35.0%
CAAAAGTTGAAATTTACGGG+CGG + chr4_2:70492396-70492415 None:intergenic 35.0%
! CCGTAAATTTCAACTTTTGC+AGG - chr4_2:70492397-70492416 Msa0619380:intron 35.0%
ATGTATCTATAGGCAAGGAT+GGG + chr4_2:70492635-70492654 None:intergenic 35.0%
TATGTATCTATAGGCAAGGA+TGG + chr4_2:70492636-70492655 None:intergenic 35.0%
TCAACGCGTTATGTATCTAT+AGG + chr4_2:70492645-70492664 None:intergenic 35.0%
CAGGGTATAAAATCATTGCT+AGG + chr4_2:70492868-70492887 None:intergenic 35.0%
! CATCATTTAGAAGTACACCA+AGG + chr4_2:70492993-70493012 None:intergenic 35.0%
!! AACTTTAAGTTGGACTCCAT+TGG + chr4_2:70493034-70493053 None:intergenic 35.0%
! GTGCCATTCTAACTTTAAGT+TGG + chr4_2:70493044-70493063 None:intergenic 35.0%
CTTAAAGTTAGAATGGCACT+TGG - chr4_2:70493045-70493064 Msa0619380:CDS 35.0%
GACATAAATTGTGGTCATCA+TGG + chr4_2:70493468-70493487 None:intergenic 35.0%
GTCCAAGTATTCCATCTAAA+GGG + chr4_2:70493591-70493610 None:intergenic 35.0%
AGTCCAAGTATTCCATCTAA+AGG + chr4_2:70493592-70493611 None:intergenic 35.0%
TTAGATGGAATACTTGGACT+TGG - chr4_2:70493592-70493611 Msa0619380:intron 35.0%
ATTCAACTGTGATATCAAGC+TGG + chr4_2:70493629-70493648 None:intergenic 35.0%
GATATCACAGTTGAATAGTC+AGG - chr4_2:70493633-70493652 Msa0619380:intron 35.0%
ATGATTCTTCTCGAATGAGT+TGG - chr4_2:70493728-70493747 Msa0619380:CDS 35.0%
CTGAGAGTTGAAGTATGTAT+AGG + chr4_2:70493975-70493994 None:intergenic 35.0%
CTATACATACTTCAACTCTC+AGG - chr4_2:70493973-70493992 Msa0619380:intron 35.0%
TGACCAAAGAAATCATTGCT+TGG + chr4_2:70494003-70494022 None:intergenic 35.0%
GTGTTTCTCGTTAGTTAGTT+TGG - chr4_2:70494161-70494180 Msa0619380:intron 35.0%
TTGGTGAAACTAAGTGTTAG+TGG + chr4_2:70494731-70494750 None:intergenic 35.0%
CTAACACTTAGTTTCACCAA+TGG - chr4_2:70494731-70494750 Msa0619380:intron 35.0%
CTAAATTCTCACCTCCAATT+AGG + chr4_2:70494979-70494998 None:intergenic 35.0%
!! TGGTGCTACATAGATAGTAA+TGG - chr4_2:70495141-70495160 Msa0619380:CDS 35.0%
GTCATATGCATGCCTTAATT+AGG + chr4_2:70495382-70495401 None:intergenic 35.0%
GCATTGTGTAGAGTATATTG+GGG - chr4_2:70495517-70495536 Msa0619380:five_prime_UTR 35.0%
TGGTGAATGAGCAAGTGTTA+AGG + chr4_2:70491192-70491211 None:intergenic 40.0%
! GAAACTGAAGGATAATGGTG+GGG + chr4_2:70491496-70491515 None:intergenic 40.0%
AAGATGAAGATAGGTAGGGT+GGG - chr4_2:70491611-70491630 Msa0619380:intron 40.0%
TATGGCAACGTTTATCCTGT+TGG - chr4_2:70491809-70491828 Msa0619380:CDS 40.0%
ATGGCAACGTTTATCCTGTT+GGG - chr4_2:70491810-70491829 Msa0619380:CDS 40.0%
ATCCAAATTCATACCAGGAC+TGG - chr4_2:70492035-70492054 Msa0619380:CDS 40.0%
TTCCAGTCCTGGTATGAATT+TGG + chr4_2:70492040-70492059 None:intergenic 40.0%
AACCTCTTCTGACATTGATG+GGG - chr4_2:70492187-70492206 Msa0619380:intron 40.0%
!! TCAACCGGTTTGAGTTTAAG+GGG + chr4_2:70492336-70492355 None:intergenic 40.0%
!! CTTCAACCGGTTTGAGTTTA+AGG + chr4_2:70492338-70492357 None:intergenic 40.0%
ACATCAAGAAAATAGGGCCT+TGG + chr4_2:70492456-70492475 None:intergenic 40.0%
GCGTTATGTATCTATAGGCA+AGG + chr4_2:70492640-70492659 None:intergenic 40.0%
GTCTTCACATGTGTAGTCAT+CGG + chr4_2:70492923-70492942 None:intergenic 40.0%
TACCTTCTCAACTTCACCAA+TGG - chr4_2:70493015-70493034 Msa0619380:CDS 40.0%
TGCTATTGTCTCTATGTGTG+AGG + chr4_2:70493343-70493362 None:intergenic 40.0%
! TCTAAAGGGTGGTAAGTTGA+AGG + chr4_2:70493577-70493596 None:intergenic 40.0%
TCAACTTACCACCCTTTAGA+TGG - chr4_2:70493577-70493596 Msa0619380:intron 40.0%
CAAGTATTCCATCTAAAGGG+TGG + chr4_2:70493588-70493607 None:intergenic 40.0%
CACCCTTTAGATGGAATACT+TGG - chr4_2:70493586-70493605 Msa0619380:intron 40.0%
ATGGAATACTTGGACTTGGA+AGG - chr4_2:70493596-70493615 Msa0619380:intron 40.0%
TGGAATACTTGGACTTGGAA+GGG - chr4_2:70493597-70493616 Msa0619380:intron 40.0%
!!! CTGAACTTGTTTTTGGAGGA+AGG - chr4_2:70493903-70493922 Msa0619380:intron 40.0%
AGAATGGACACTATAGTCCT+TGG + chr4_2:70494309-70494328 None:intergenic 40.0%
TCATTTGCTCAATCAACTCG+AGG - chr4_2:70494429-70494448 Msa0619380:intron 40.0%
!!! TCATCAGGTGCTGCTTTTAT+TGG + chr4_2:70494635-70494654 None:intergenic 40.0%
ATAGGTAAAGTCTGGTCATC+AGG + chr4_2:70494650-70494669 None:intergenic 40.0%
ACACTTAGTTTCACCAATGG+TGG - chr4_2:70494734-70494753 Msa0619380:intron 40.0%
AGGTTTAACTCTTCCACCAT+TGG + chr4_2:70494750-70494769 None:intergenic 40.0%
GTTTGTCTAGGCATTCTGAA+CGG - chr4_2:70494926-70494945 Msa0619380:intron 40.0%
TTGGGTGAACTGAACCTAAT+TGG - chr4_2:70494962-70494981 Msa0619380:CDS 40.0%
! ACACCTTCAGTTTGAAGTGT+TGG - chr4_2:70495121-70495140 Msa0619380:CDS 40.0%
ATCCATGCTAGACAAAGTGA+TGG - chr4_2:70495261-70495280 Msa0619380:five_prime_UTR 40.0%
TACCATCACTTTGTCTAGCA+TGG + chr4_2:70495266-70495285 None:intergenic 40.0%
GGAATACTATTGCAATCTGC+AGG + chr4_2:70495322-70495341 None:intergenic 40.0%
CATATTATAGAGCAGGGTGA+TGG - chr4_2:70495435-70495454 Msa0619380:five_prime_UTR 40.0%
ATTGGGGTAAGCTATTATGC+AGG - chr4_2:70495533-70495552 Msa0619380:five_prime_UTR 40.0%
TTGGGGTAAGCTATTATGCA+GGG - chr4_2:70495534-70495553 Msa0619380:five_prime_UTR 40.0%
GAAGATGAAGATAGGTAGGG+TGG - chr4_2:70491610-70491629 Msa0619380:intron 45.0%
AGATAGGTAGGGTGGGATTA+AGG - chr4_2:70491618-70491637 Msa0619380:intron 45.0%
GATAGGTAGGGTGGGATTAA+GGG - chr4_2:70491619-70491638 Msa0619380:intron 45.0%
ACTTGCCTTCTTGTTCAGCT+TGG - chr4_2:70491675-70491694 Msa0619380:intron 45.0%
CCAAACCAAGCTGAACAAGA+AGG + chr4_2:70491683-70491702 None:intergenic 45.0%
CCTTCTTGTTCAGCTTGGTT+TGG - chr4_2:70491680-70491699 Msa0619380:intron 45.0%
!! GAGACTTGGTCTTGAAGACA+TGG + chr4_2:70491750-70491769 None:intergenic 45.0%
ACCTCTTCTGACATTGATGG+GGG - chr4_2:70492188-70492207 Msa0619380:intron 45.0%
TCAAGAAAATAGGGCCTTGG+TGG + chr4_2:70492453-70492472 None:intergenic 45.0%
TCCTTGTACCCAATGTTCTG+AGG - chr4_2:70492515-70492534 Msa0619380:intron 45.0%
ACCTCAGAACATTGGGTACA+AGG + chr4_2:70492519-70492538 None:intergenic 45.0%
TCATTGCTAGGCTTGTAGAG+TGG + chr4_2:70492856-70492875 None:intergenic 45.0%
GCACAAAGTGGATCTTTGCA+GGG + chr4_2:70492886-70492905 None:intergenic 45.0%
TCACATGTGTAGTCATCGGT+GGG + chr4_2:70492919-70492938 None:intergenic 45.0%
TTCACATGTGTAGTCATCGG+TGG + chr4_2:70492920-70492939 None:intergenic 45.0%
GCTGATCAATACTCAACCCT+TGG - chr4_2:70492973-70492992 Msa0619380:intron 45.0%
CTCCATTGGTGAAGTTGAGA+AGG + chr4_2:70493020-70493039 None:intergenic 45.0%
ATGCCTAGACGACTACACAA+TGG - chr4_2:70493279-70493298 Msa0619380:intron 45.0%
! ATGCATTGGCGTTTGTGGAA+TGG + chr4_2:70493382-70493401 None:intergenic 45.0%
! AGATCATGCATTGGCGTTTG+TGG + chr4_2:70493387-70493406 None:intergenic 45.0%
GGAATACTTGGACTTGGAAG+GGG - chr4_2:70493598-70493617 Msa0619380:intron 45.0%
ACAGTTGAATAGTCAGGGCT+TGG - chr4_2:70493639-70493658 Msa0619380:intron 45.0%
ATTGTTTAAGCTCGCGAGGA+GGG - chr4_2:70493680-70493699 Msa0619380:intron 45.0%
AGGGGAAAACATTACTCTGC+AGG - chr4_2:70493875-70493894 Msa0619380:intron 45.0%
!! GGACCAGCTGAACTTGTTTT+TGG - chr4_2:70493896-70493915 Msa0619380:intron 45.0%
CCTCCAAAAACAAGTTCAGC+TGG + chr4_2:70493902-70493921 None:intergenic 45.0%
!!! CCAGCTGAACTTGTTTTTGG+AGG - chr4_2:70493899-70493918 Msa0619380:intron 45.0%
!! GTTTTTGGAGGAAGGAAGAC+CGG - chr4_2:70493911-70493930 Msa0619380:intron 45.0%
!! TTTTTGGAGGAAGGAAGACC+GGG - chr4_2:70493912-70493931 Msa0619380:intron 45.0%
GCTGACGCTTAACACTTTCA+AGG + chr4_2:70494119-70494138 None:intergenic 45.0%
TGATGCGCCAAACTGACTAA+CGG + chr4_2:70494234-70494253 None:intergenic 45.0%
ACCAGACTTTACCTATGTGC+TGG - chr4_2:70494654-70494673 Msa0619380:intron 45.0%
! ACTTTACCTATGTGCTGGCA+TGG - chr4_2:70494659-70494678 Msa0619380:intron 45.0%
! CTTTTACCATGCCAGCACAT+AGG + chr4_2:70494668-70494687 None:intergenic 45.0%
GTTCACCCAATCCTACTTCA+GGG + chr4_2:70494952-70494971 None:intergenic 45.0%
AGTTCACCCAATCCTACTTC+AGG + chr4_2:70494953-70494972 None:intergenic 45.0%
GGTGAACTGAACCTAATTGG+AGG - chr4_2:70494965-70494984 Msa0619380:CDS 45.0%
! CTTCAAACTGAAGGTGTGTC+TGG + chr4_2:70495118-70495137 None:intergenic 45.0%
GCACCAACACTTCAAACTGA+AGG + chr4_2:70495127-70495146 None:intergenic 45.0%
GACAACGAGAAGCAGTTCAT+TGG - chr4_2:70495289-70495308 Msa0619380:five_prime_UTR 45.0%
ACGAGAAGCAGTTCATTGGA+TGG - chr4_2:70495293-70495312 Msa0619380:five_prime_UTR 45.0%
CGAGAAGCAGTTCATTGGAT+GGG - chr4_2:70495294-70495313 Msa0619380:five_prime_UTR 45.0%
GAGAAGCAGTTCATTGGATG+GGG - chr4_2:70495295-70495314 Msa0619380:five_prime_UTR 45.0%
! TGGGAGAGCGTGTGAATGAA+TGG + chr4_2:70491212-70491231 None:intergenic 50.0%
GGTGGGATTAAGGGTGATGA+TGG - chr4_2:70491628-70491647 Msa0619380:intron 50.0%
CTTGAAGACATGGCTTCACC+TGG + chr4_2:70491740-70491759 None:intergenic 50.0%
GCAGCATGGTTCATGAGACT+TGG + chr4_2:70491764-70491783 None:intergenic 50.0%
AGTCTCATGAACCATGCTGC+TGG - chr4_2:70491764-70491783 Msa0619380:intron 50.0%
CAATTGAGGAACCAGCAGCA+TGG + chr4_2:70491778-70491797 None:intergenic 50.0%
TCCCCCATCAATGTCAGAAG+AGG + chr4_2:70492192-70492211 None:intergenic 50.0%
CTTCTGACATTGATGGGGGA+AGG - chr4_2:70492192-70492211 Msa0619380:intron 50.0%
GTGAGGTTCGCTACTTCAAC+CGG + chr4_2:70492351-70492370 None:intergenic 50.0%
TCAACATAGGCCAACCACCA+AGG - chr4_2:70492436-70492455 Msa0619380:intron 50.0%
! GAAAATAGGGCCTTGGTGGT+TGG + chr4_2:70492449-70492468 None:intergenic 50.0%
! ACACTGGTAGCGAACTCACA+TGG - chr4_2:70492478-70492497 Msa0619380:intron 50.0%
!! GGGTACAAGGAGCATCACAT+TGG + chr4_2:70492506-70492525 None:intergenic 50.0%
CTAGGCTTGTAGAGTGGATG+GGG + chr4_2:70492850-70492869 None:intergenic 50.0%
GCTAGGCTTGTAGAGTGGAT+GGG + chr4_2:70492851-70492870 None:intergenic 50.0%
TGCTAGGCTTGTAGAGTGGA+TGG + chr4_2:70492852-70492871 None:intergenic 50.0%
CGCACAAAGTGGATCTTTGC+AGG + chr4_2:70492887-70492906 None:intergenic 50.0%
CGACCATTGTGTAGTCGTCT+AGG + chr4_2:70493285-70493304 None:intergenic 50.0%
ACTTGGACTTGGAAGGGGAA+AGG - chr4_2:70493603-70493622 Msa0619380:intron 50.0%
!! GGCTTGGTGCGAAATGTGAT+GGG - chr4_2:70493655-70493674 Msa0619380:intron 50.0%
GGACATTGTTTAAGCTCGCG+AGG - chr4_2:70493676-70493695 Msa0619380:intron 50.0%
CATTGTTTAAGCTCGCGAGG+AGG - chr4_2:70493679-70493698 Msa0619380:intron 50.0%
TTGTTTAAGCTCGCGAGGAG+GGG - chr4_2:70493681-70493700 Msa0619380:intron 50.0%
GGAGGGGGATACATCTTCTT+TGG - chr4_2:70493697-70493716 Msa0619380:intron 50.0%
!! TTTTGGAGGAAGGAAGACCG+GGG - chr4_2:70493913-70493932 Msa0619380:intron 50.0%
GTGCCTTCCGTTAGTCAGTT+TGG - chr4_2:70494224-70494243 Msa0619380:intron 50.0%
GCCAGCACATAGGTAAAGTC+TGG + chr4_2:70494658-70494677 None:intergenic 50.0%
TCAGGAGGGATCTCAAACTG+AGG + chr4_2:70494770-70494789 None:intergenic 50.0%
ATTCTGAACGGCCCTGAAGT+AGG - chr4_2:70494938-70494957 Msa0619380:intron 50.0%
AACGGCCCTGAAGTAGGATT+GGG - chr4_2:70494944-70494963 Msa0619380:intron 50.0%
!! GGGCTTGGTGCGAAATGTGA+TGG - chr4_2:70493654-70493673 Msa0619380:intron 55.0%
TGTTTAAGCTCGCGAGGAGG+GGG - chr4_2:70493682-70493701 Msa0619380:intron 55.0%
GCGCCAAACTGACTAACGGA+AGG + chr4_2:70494230-70494249 None:intergenic 55.0%
GAACGGCCCTGAAGTAGGAT+TGG - chr4_2:70494943-70494962 Msa0619380:intron 55.0%
TCTGGTGTGCGAGACATGTC+TGG + chr4_2:70495100-70495119 None:intergenic 55.0%
GGCTGCAAGGACGCACAAAG+TGG + chr4_2:70492898-70492917 None:intergenic 60.0%
!! GTAGTCATCGGTGGGCTGCA+AGG + chr4_2:70492911-70492930 None:intergenic 60.0%
GGAGGAAGGAAGACCGGGGT+TGG - chr4_2:70493917-70493936 Msa0619380:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70491145 70495635 70491145 ID=Msa0619380;Name=Msa0619380
chr4_2 mRNA 70491145 70495635 70491145 ID=Msa0619380-mRNA-1;Parent=Msa0619380;Name=Msa0619380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=469|0.85|0.87|1|1|1|8|269|412
chr4_2 exon 70491145 70491523 70491145 ID=Msa0619380-mRNA-1:exon:20624;Parent=Msa0619380-mRNA-1
chr4_2 exon 70491794 70491866 70491794 ID=Msa0619380-mRNA-1:exon:20623;Parent=Msa0619380-mRNA-1
chr4_2 exon 70491972 70492172 70491972 ID=Msa0619380-mRNA-1:exon:20622;Parent=Msa0619380-mRNA-1
chr4_2 exon 70492762 70492903 70492762 ID=Msa0619380-mRNA-1:exon:20621;Parent=Msa0619380-mRNA-1
chr4_2 exon 70493007 70493231 70493007 ID=Msa0619380-mRNA-1:exon:20620;Parent=Msa0619380-mRNA-1
chr4_2 exon 70493713 70493864 70493713 ID=Msa0619380-mRNA-1:exon:20619;Parent=Msa0619380-mRNA-1
chr4_2 exon 70494244 70494361 70494244 ID=Msa0619380-mRNA-1:exon:20618;Parent=Msa0619380-mRNA-1
chr4_2 exon 70494949 70495635 70494949 ID=Msa0619380-mRNA-1:exon:20617;Parent=Msa0619380-mRNA-1
chr4_2 five_prime_UTR 70495167 70495635 70495167 ID=Msa0619380-mRNA-1:five_prime_utr;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70494949 70495166 70494949 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70494244 70494361 70494244 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70493713 70493864 70493713 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70493007 70493231 70493007 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70492762 70492903 70492762 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70491972 70492172 70491972 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70491794 70491866 70491794 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 CDS 70491414 70491523 70491414 ID=Msa0619380-mRNA-1:cds;Parent=Msa0619380-mRNA-1
chr4_2 three_prime_UTR 70491145 70491413 70491145 ID=Msa0619380-mRNA-1:three_prime_utr;Parent=Msa0619380-mRNA-1
Gene Sequence

>Msa0619380

ATGAAGATAGGTAGGGTGGGATTAAGGGTGATGATGGTTGCATTGATGATGATGATGTTAAACTTGCCTTCTTGTTCAGCTTGGTTTGGTAATAAACGCAAAAGTGGAAGAAACTCAATTTTACCAGGTGAAGCCATGTCTTCAAGACCAAGTCTCATGAACCATGCTGCTGGTTCCTCAATTGTGATCCCTATTTATGGCAACGTTTATCCTGTTGGGTTCTATAATGTTACTCTCAACATAGGCCAACCACCAAGGCCCTATTTTCTTGATGTTGACACTGGTAGCGAACTCACATGGCTCCAATGTGATGCTCCTTGTACCCAATGTTCTGAGCCCACCGATGACTACACATGTGAAGACCCTAATCAATGTGACTATGAAATTAAGTATGCTGATCAATACTCAACCCTTGGTGTACTTCTAAATGATGTTTACCTTCTCAACTTCACCAATGGAGTCCAACTTAAAGTTAGAATGGCACTTGGATGTGGATATGACCAGATATTTTCACCTTCAACTTACCACCCTTTAGATGGAATACTTGGACTTGGAAGGGGAAAGGCCAGCTTGATATCACAGTTGAATAGTCAGGGCTTGGTGCGAAATGTGATGGGACATTGTTTAAGCTCGCGAGGAGGGGGATACATCTTCTTTGGAAATGCTTATGATTCTTCTCGAATGAGTTGGACTCCAATTTCATCAATCGATTCGGGAAAACATTACTCTGCAGGACCAGCTGAACTTGTTTTTGGAGGAAGGAAGACCGGGGTTGGAAGTTTAAATATTATCTTTGACACTGGAAGTTCCTATACATACTTCAACTCTCAGGCTTACCAAGCAATGATTTCTTTGCTGAATAAGGAATTACATAGAAAGCCAATAAAAGCAGCACCTGATGACCAGACTTTACCTATGTGCTGGCATGGTAAAAGACCTTTCAGAAGCATAAATGAAGTGAAGAAATACTTCAAGCCACTAACACTTAGTTTCACCAATGGTGGAAGAGTTAAACCTCAGTTTGAGATCCCTCCTGAAGCTTATCTTATAATATCAAATATGGGAAATGTTTGTCTAGGCATTCTGAACGGCCCTGAAGTAGGATTGGGTGAACTGAACCTAATTGGAGACATATCCATGCTAGACAAAGTGATGGTATTCGACAACGAGAAGCAGTTCATTGGATGGGGACCTGCAGATTGCAATAGTATTCCAAAATCCAGAGATTTCAGTTTATGA
Protein sequence

>Msa0619380

MKIGRVGLRVMMVALMMMMLNLPSCSAWFGNKRKSGRNSILPGEAMSSRPSLMNHAAGSSIVIPIYGNVYPVGFYNVTLNIGQPPRPYFLDVDTGSELTWLQCDAPCTQCSEPTDDYTCEDPNQCDYEIKYADQYSTLGVLLNDVYLLNFTNGVQLKVRMALGCGYDQIFSPSTYHPLDGILGLGRGKASLISQLNSQGLVRNVMGHCLSSRGGGYIFFGNAYDSSRMSWTPISSIDSGKHYSAGPAELVFGGRKTGVGSLNIIFDTGSSYTYFNSQAYQAMISLLNKELHRKPIKAAPDDQTLPMCWHGKRPFRSINEVKKYFKPLTLSFTNGGRVKPQFEIPPEAYLIISNMGNVCLGILNGPEVGLGELNLIGDISMLDKVMVFDNEKQFIGWGPADCNSIPKSRDFSL*