Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439370 | XP_003593800.1 | 99.293 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439370 | sp|Q9C7N2|CAD1_ARATH | 74.120 | 568 | 136 | 2 | 3 | 566 | 1 | 561 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439370 | G7ILM1 | 99.293 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1168 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041880 | Msa1439370 | 0.804428 | 2.170818e-49 | -8.615850e-47 |
| Msa1087310 | Msa1439370 | 0.985980 | 2.774450e-165 | -8.615850e-47 |
| Msa0274200 | Msa1439370 | 0.996647 | 2.751032e-230 | -8.615850e-47 |
| Msa0314370 | Msa1439370 | 0.979069 | 3.635585e-147 | -8.615850e-47 |
| Msa1111770 | Msa1439370 | 0.802012 | 6.864655e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439370 | MtrunA17_Chr2g0284691 | 99.293 | 566 | 4 | 0 | 1 | 566 | 1 | 566 | 0.0 | 1168 |
| Msa1439370 | MtrunA17_Chr4g0013011 | 60.381 | 578 | 197 | 4 | 18 | 566 | 10 | 584 | 0.0 | 722 |
| Msa1439370 | MtrunA17_Chr2g0277061 | 43.697 | 595 | 269 | 11 | 22 | 565 | 15 | 594 | 9.95e-155 | 456 |
| Msa1439370 | MtrunA17_Chr8g0377631 | 39.251 | 614 | 298 | 9 | 22 | 566 | 11 | 618 | 3.19e-139 | 417 |
| Msa1439370 | MtrunA17_Chr8g0385121 | 39.835 | 605 | 295 | 11 | 11 | 564 | 2 | 588 | 2.61e-133 | 401 |
| Msa1439370 | MtrunA17_Chr3g0122211 | 38.736 | 617 | 292 | 13 | 22 | 566 | 17 | 619 | 2.71e-132 | 399 |
| Msa1439370 | MtrunA17_Chr8g0391931 | 40.772 | 596 | 286 | 15 | 22 | 565 | 9 | 589 | 1.76e-131 | 396 |
| Msa1439370 | MtrunA17_Chr4g0046841 | 38.907 | 604 | 291 | 12 | 22 | 564 | 25 | 611 | 4.96e-131 | 396 |
| Msa1439370 | MtrunA17_Chr8g0385131 | 37.786 | 569 | 312 | 10 | 22 | 566 | 16 | 566 | 7.32e-120 | 365 |
| Msa1439370 | MtrunA17_Chr8g0385181 | 39.464 | 560 | 302 | 13 | 22 | 566 | 16 | 553 | 1.41e-118 | 362 |
| Msa1439370 | MtrunA17_Chr8g0385171 | 36.120 | 299 | 179 | 7 | 6 | 301 | 2 | 291 | 4.88e-51 | 177 |
| Msa1439370 | MtrunA17_Chr8g0385161 | 36.090 | 266 | 144 | 5 | 305 | 566 | 1 | 244 | 2.71e-40 | 147 |
| Msa1439370 | MtrunA17_Chr7g0274871 | 37.241 | 145 | 80 | 4 | 22 | 163 | 130 | 266 | 4.08e-19 | 87.8 |
| Msa1439370 | MtrunA17_Chr8g0385141 | 37.037 | 108 | 67 | 1 | 127 | 233 | 13 | 120 | 3.21e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439370 | AT1G29690.1 | 74.120 | 568 | 136 | 2 | 3 | 566 | 1 | 561 | 0.0 | 865 |
| Msa1439370 | AT4G24290.2 | 42.088 | 594 | 277 | 11 | 22 | 564 | 14 | 591 | 4.82e-146 | 434 |
| Msa1439370 | AT4G24290.3 | 42.088 | 594 | 277 | 11 | 22 | 564 | 14 | 591 | 4.82e-146 | 434 |
| Msa1439370 | AT1G28380.1 | 39.866 | 597 | 296 | 11 | 22 | 565 | 18 | 604 | 8.41e-134 | 403 |
| Msa1439370 | AT1G14780.1 | 39.060 | 617 | 300 | 12 | 19 | 565 | 9 | 619 | 2.39e-130 | 395 |
| Msa1439370 | AT4G24290.1 | 37.771 | 323 | 171 | 4 | 22 | 314 | 14 | 336 | 6.29e-67 | 221 |
Find 163 sgRNAs with CRISPR-Local
Find 472 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCCCAAACTCGAGTTATT+TGG | 0.151329 | tig0028749:+26503 | Msa1439370:intergenic |
| TAAATTAACAAAACAAAATT+TGG | 0.151958 | tig0028749:-28944 | Msa1439370:CDS |
| GGTTCTGTTTGTTGCCTTCT+AGG | 0.176268 | tig0028749:+25649 | Msa1439370:intergenic |
| ATCTCTTCAGTTCAGCTTAA+TGG | 0.199416 | tig0028749:-26440 | Msa1439370:CDS |
| GAGATTGAGAAGAAAATAAA+TGG | 0.207046 | tig0028749:+31429 | Msa1439370:intergenic |
| TTCTCTATAACAAATGATTA+TGG | 0.217043 | tig0028749:-31380 | Msa1439370:exon |
| TTGAGCAAAGTCATATTAAA+TGG | 0.226890 | tig0028749:-27109 | Msa1439370:CDS |
| CCTGGTCATTGGTTAGTTAC+AGG | 0.228325 | tig0028749:-25135 | Msa1439370:CDS |
| TCCTCCGGACCTTGCCATTT+GGG | 0.244585 | tig0028749:+25543 | Msa1439370:intergenic |
| CTCCTCCGGACCTTGCCATT+TGG | 0.248166 | tig0028749:+25542 | Msa1439370:intergenic |
| TGTTGTTCCTAATGTTTCTT+TGG | 0.249610 | tig0028749:-31170 | Msa1439370:CDS |
| TTGATGTTACATCAGATATT+AGG | 0.264623 | tig0028749:-31279 | Msa1439370:CDS |
| TGAAGACCTACAGTATTTCT+TGG | 0.272397 | tig0028749:-26530 | Msa1439370:CDS |
| GAAAACCACTGACGAGAAAA+AGG | 0.281289 | tig0028749:-25235 | Msa1439370:CDS |
| CTGTTGCAGATGTAACAATA+TGG | 0.285114 | tig0028749:+27804 | Msa1439370:intergenic |
| CTGGGGCCCAACTCGGCGTT+TGG | 0.286242 | tig0028749:-25404 | Msa1439370:CDS |
| AGTACATGGCGTAAAGCTTT+TGG | 0.287935 | tig0028749:-27015 | Msa1439370:CDS |
| ATGGGTGGAAACTGTAAAAT+TGG | 0.302934 | tig0028749:-27090 | Msa1439370:CDS |
| ATTTCCAAATAACTCGAGTT+TGG | 0.307852 | tig0028749:-26507 | Msa1439370:CDS |
| TTAGGCTTCTTTACTGTAAA+GGG | 0.308131 | tig0028749:-31261 | Msa1439370:CDS |
| TCTCTTCAGTTCAGCTTAAT+GGG | 0.316945 | tig0028749:-26439 | Msa1439370:CDS |
| GGCGCGCTGTTCCTTACTCT+TGG | 0.323349 | tig0028749:-28903 | Msa1439370:CDS |
| TTGCAACTCAATCCAAGCTT+TGG | 0.330570 | tig0028749:-31311 | Msa1439370:CDS |
| ATCTCGATGAGGAACATAAT+AGG | 0.337585 | tig0028749:-31216 | Msa1439370:CDS |
| GTTAATTTAACTTCGAATAG+TGG | 0.352885 | tig0028749:+28958 | Msa1439370:intergenic |
| TCTGGTGTTCATATTGTCAC+TGG | 0.361807 | tig0028749:-25423 | Msa1439370:CDS |
| CTCTTGGGATCCAGCATCCT+TGG | 0.364296 | tig0028749:-28887 | Msa1439370:CDS |
| CAACTTCACTGGCTCTTCAA+TGG | 0.371767 | tig0028749:-29028 | Msa1439370:CDS |
| TTAAGGACATTGAAAATGAT+AGG | 0.374657 | tig0028749:-27706 | Msa1439370:CDS |
| GCTAAGCTTGGAGTAGAAAA+AGG | 0.376859 | tig0028749:-25111 | Msa1439370:CDS |
| TGCAACTCAATCCAAGCTTT+GGG | 0.377483 | tig0028749:-31310 | Msa1439370:CDS |
| CAATCGGTGCAGTGCTTACA+TGG | 0.380427 | tig0028749:+25475 | Msa1439370:intergenic |
| CAACGGCTGTCTTGCTCCTC+CGG | 0.382643 | tig0028749:+25528 | Msa1439370:intergenic |
| TTTCCAAATAACTCGAGTTT+GGG | 0.387219 | tig0028749:-26506 | Msa1439370:CDS |
| CCCATCGTTTCTCTTCTTGA+AGG | 0.389904 | tig0028749:-27038 | Msa1439370:CDS |
| CTGGTCATTGGTTAGTTACA+GGG | 0.399984 | tig0028749:-25134 | Msa1439370:CDS |
| CTGGTGTTCATATTGTCACT+GGG | 0.402777 | tig0028749:-25422 | Msa1439370:CDS |
| AATTCTATGTTCAACTTCAC+TGG | 0.404887 | tig0028749:-29039 | Msa1439370:CDS |
| CTTTACTGTAAAGGGGCACC+TGG | 0.405239 | tig0028749:-31253 | Msa1439370:CDS |
| CGCAAGATATTCCTGGTCAT+TGG | 0.407797 | tig0028749:-25146 | Msa1439370:CDS |
| AACTGAAGAGATTGACAAAC+AGG | 0.408326 | tig0028749:+26451 | Msa1439370:intergenic |
| AGTTGAATTGTTGAATGAAT+AGG | 0.414435 | tig0028749:+31457 | Msa1439370:intergenic |
| TTAGGAAACAATACCTGATC+TGG | 0.416102 | tig0028749:+26397 | Msa1439370:intergenic |
| TCAATATCCAAAGAAACATT+AGG | 0.416962 | tig0028749:+31163 | Msa1439370:intergenic |
| GGCTATTGTTTCTAGTGTGA+AGG | 0.418357 | tig0028749:+25003 | Msa1439370:intergenic |
| TCTCGATGAGGAACATAATA+GGG | 0.419000 | tig0028749:-31215 | Msa1439370:CDS |
| AATGAAAGGTCAGGCATAGA+AGG | 0.419511 | tig0028749:-29084 | Msa1439370:CDS |
| TGGGGCCCAACTCGGCGTTT+GGG | 0.421506 | tig0028749:-25403 | Msa1439370:CDS |
| ATTAGGCTTCTTTACTGTAA+AGG | 0.421799 | tig0028749:-31262 | Msa1439370:CDS |
| GCAGAGACGTCGTGTATATT+AGG | 0.422089 | tig0028749:-27775 | Msa1439370:CDS |
| TTGCCATTTGGGAGCACCTA+TGG | 0.423342 | tig0028749:+25554 | Msa1439370:intergenic |
| GCGCGCTGTTCCTTACTCTT+GGG | 0.436346 | tig0028749:-28902 | Msa1439370:CDS |
| CAACTCGGCGTTTGGGACTT+CGG | 0.437523 | tig0028749:-25396 | Msa1439370:CDS |
| GCGCCTGACTTCATCATTCA+AGG | 0.443883 | tig0028749:+28921 | Msa1439370:intergenic |
| TCAATCCAAGCTTTGGGTCG+TGG | 0.444195 | tig0028749:-31304 | Msa1439370:CDS |
| AAATACTGTAGGTCTTCAAT+AGG | 0.446642 | tig0028749:+26535 | Msa1439370:intergenic |
| TTGGTTTCAGTTATCTCAAT+CGG | 0.449176 | tig0028749:+25459 | Msa1439370:intergenic |
| GAAGTCCCAAACGCCGAGTT+GGG | 0.450928 | tig0028749:+25398 | Msa1439370:intergenic |
| GGACTAAGGCTGAGCCTAGA+AGG | 0.451984 | tig0028749:-25663 | Msa1439370:CDS |
| AGATAACTGAAACCAACATT+GGG | 0.454313 | tig0028749:-25452 | Msa1439370:CDS |
| AACCATGGCAAGTGATTTAG+TGG | 0.455369 | tig0028749:+28993 | Msa1439370:intergenic |
| TTGGATATTGATTTCTCTCG+TGG | 0.455732 | tig0028749:-31151 | Msa1439370:CDS |
| AACTTCATGTTAATAATGTC+TGG | 0.460930 | tig0028749:+27065 | Msa1439370:intergenic |
| TGTGCAGCTGCCGGAGTGGA+AGG | 0.461283 | tig0028749:+25291 | Msa1439370:intergenic |
| GTAAAGGGGCACCTGGGTCT+AGG | 0.461302 | tig0028749:-31246 | Msa1439370:CDS |
| GCTTACCTAGCCAAGGATGC+TGG | 0.461481 | tig0028749:+28877 | Msa1439370:intergenic |
| GACATGACAGAAATGTCAAA+AGG | 0.463117 | tig0028749:-25171 | Msa1439370:CDS |
| CTTTGTAGATTATTCTGCTC+CGG | 0.465985 | tig0028749:+26481 | Msa1439370:intergenic |
| GTTGGTTTGAACCGATCAAA+TGG | 0.470890 | tig0028749:-25509 | Msa1439370:CDS |
| ACCAACATTGGGGACCTCTC+TGG | 0.475602 | tig0028749:-25441 | Msa1439370:CDS |
| AAAGGGCCGCAAGATATTCC+TGG | 0.476025 | tig0028749:-25153 | Msa1439370:CDS |
| TGGCCTTGAATGATGAAGTC+AGG | 0.476306 | tig0028749:-28924 | Msa1439370:CDS |
| ACCTTGTTGAAGTAGCTGTT+TGG | 0.478004 | tig0028749:+31484 | Msa1439370:intergenic |
| TTCTAGGCTCAGCCTTAGTC+CGG | 0.478380 | tig0028749:+25665 | Msa1439370:intergenic |
| GCAGAATAATCTACAAAGAA+AGG | 0.478534 | tig0028749:-26476 | Msa1439370:CDS |
| AGATTGAGAAGAAAATAAAT+GGG | 0.480489 | tig0028749:+31430 | Msa1439370:intergenic |
| ATCATCTTCTTTGTCTGCAC+CGG | 0.487290 | tig0028749:-27744 | Msa1439370:CDS |
| TGCTCCCAAATGGCAAGGTC+CGG | 0.489992 | tig0028749:-25547 | Msa1439370:CDS |
| TGAGCAAAGTCATATTAAAT+GGG | 0.490628 | tig0028749:-27108 | Msa1439370:CDS |
| GGACATTGAGAACTATGTTA+AGG | 0.491242 | tig0028749:-27723 | Msa1439370:CDS |
| GCAAGCCTGTGACCGGACTA+AGG | 0.492394 | tig0028749:-25677 | Msa1439370:CDS |
| CAAAACCACGACCCAAAGCT+TGG | 0.494144 | tig0028749:+31299 | Msa1439370:intergenic |
| TCTCTTCTTGAAGGAGTACA+TGG | 0.494167 | tig0028749:-27029 | Msa1439370:CDS |
| TAGCCAAGCATTCTTTGCAC+AGG | 0.494522 | tig0028749:-24985 | Msa1439370:three_prime_UTR |
| TGGCCATAGGTGCTCCCAAA+TGG | 0.497053 | tig0028749:-25557 | Msa1439370:CDS |
| TTAACATAGTTCTCAATGTC+CGG | 0.499086 | tig0028749:+27725 | Msa1439370:intergenic |
| GTGCAGACAAAGAAGATGAT+TGG | 0.502238 | tig0028749:+27747 | Msa1439370:intergenic |
| TTAGTTACAGGGGCTAAGCT+TGG | 0.503082 | tig0028749:-25123 | Msa1439370:CDS |
| TTCCCTGTGCAAAGAATGCT+TGG | 0.503602 | tig0028749:+24982 | Msa1439370:intergenic |
| ATTGTCACTGGGGCCCAACT+CGG | 0.508327 | tig0028749:-25411 | Msa1439370:CDS |
| GAATATTTCAATGAAAGGTC+AGG | 0.511169 | tig0028749:-29093 | Msa1439370:CDS |
| CGAAGTCCCAAACGCCGAGT+TGG | 0.513349 | tig0028749:+25397 | Msa1439370:intergenic |
| ATGAGCATAGTGACATTATG+AGG | 0.517711 | tig0028749:-24838 | Msa1439370:three_prime_UTR |
| TGGAAAACTCGCGAAAATTG+TGG | 0.518519 | tig0028749:-25193 | Msa1439370:CDS |
| GCTATTGTTTCTAGTGTGAA+GGG | 0.519979 | tig0028749:+25004 | Msa1439370:intergenic |
| TCTGATTTGTGTGCAGCTGC+CGG | 0.524876 | tig0028749:+25282 | Msa1439370:intergenic |
| TGGATATTGATTTCTCTCGT+GGG | 0.526335 | tig0028749:-31150 | Msa1439370:CDS |
| TGTTGCAGATGTAACAATAT+GGG | 0.528350 | tig0028749:+27805 | Msa1439370:intergenic |
| CTCTTTGTACTTCAAAGCAG+CGG | 0.529325 | tig0028749:+27655 | Msa1439370:intergenic |
| GAGAAGTTCTTCCATTTGAT+CGG | 0.529495 | tig0028749:+25498 | Msa1439370:intergenic |
| GAGATAACTGAAACCAACAT+TGG | 0.530726 | tig0028749:-25453 | Msa1439370:CDS |
| CTCAGCCTTAGTCCGGTCAC+AGG | 0.530834 | tig0028749:+25672 | Msa1439370:intergenic |
| ACCACATTGGGATGCACACA+TGG | 0.534167 | tig0028749:-25577 | Msa1439370:CDS |
| GTGCATCCCAATGTGGTTGG+AGG | 0.535892 | tig0028749:+25583 | Msa1439370:intergenic |
| GATGCTGGATCCCAAGAGTA+AGG | 0.536433 | tig0028749:+28892 | Msa1439370:intergenic |
| TGGCAGAATATTTCAATGAA+AGG | 0.536564 | tig0028749:-29098 | Msa1439370:CDS |
| GTTACATCTGCAACAGTTGG+TGG | 0.540314 | tig0028749:-27797 | Msa1439370:CDS |
| ACTAAATCACTTGCCATGGT+TGG | 0.541025 | tig0028749:-28991 | Msa1439370:CDS |
| TACTGTAGGTCTTCAATAGG+AGG | 0.541171 | tig0028749:+26538 | Msa1439370:intergenic |
| GATTTCTCTCGTGGGAAAAG+TGG | 0.542981 | tig0028749:-31142 | Msa1439370:CDS |
| ACCAGAGAGGTCCCCAATGT+TGG | 0.547567 | tig0028749:+25440 | Msa1439370:intergenic |
| GTTGGACGCAAGCCTGTGAC+CGG | 0.554152 | tig0028749:-25684 | Msa1439370:CDS |
| TTTAGTTGATGGTGATGCAA+TGG | 0.556791 | tig0028749:-24911 | Msa1439370:three_prime_UTR |
| TCTTTGTACTTCAAAGCAGC+GGG | 0.557262 | tig0028749:+27656 | Msa1439370:intergenic |
| GGGATCCAGCATCCTTGGCT+AGG | 0.559891 | tig0028749:-28882 | Msa1439370:intron |
| AGACGGTGCTTCGTCATCAT+CGG | 0.560891 | tig0028749:-25262 | Msa1439370:CDS |
| TGTGTGCATCCCAATGTGGT+TGG | 0.562576 | tig0028749:+25580 | Msa1439370:intergenic |
| TGGTCATTGGTTAGTTACAG+GGG | 0.562808 | tig0028749:-25133 | Msa1439370:CDS |
| ATTTGATCGGTTCAAACCAA+CGG | 0.563797 | tig0028749:+25511 | Msa1439370:intergenic |
| TGGGATGCACACATGGCCAT+AGG | 0.574386 | tig0028749:-25570 | Msa1439370:CDS |
| CGGAGGAGCAAGACAGCCGT+TGG | 0.574725 | tig0028749:-25527 | Msa1439370:CDS |
| CCTTAGAGAAAAGTAGTTTG+AGG | 0.575804 | tig0028749:+25355 | Msa1439370:intergenic |
| GAAGATAGTTCCGTCCACAT+TGG | 0.576959 | tig0028749:-25213 | Msa1439370:CDS |
| ACATGACAGAAATGTCAAAA+GGG | 0.578364 | tig0028749:-25170 | Msa1439370:CDS |
| AGCCACTAAATCACTTGCCA+TGG | 0.581549 | tig0028749:-28995 | Msa1439370:CDS |
| TTTACTGTAAAGGGGCACCT+GGG | 0.582513 | tig0028749:-31252 | Msa1439370:CDS |
| TGCTTTGAAGTACAAAGAGA+AGG | 0.585123 | tig0028749:-27651 | Msa1439370:intron |
| TCCCAAATGGCAAGGTCCGG+AGG | 0.587700 | tig0028749:-25544 | Msa1439370:CDS |
| AAAATTAGCTTACCTAGCCA+AGG | 0.588224 | tig0028749:+28870 | Msa1439370:intergenic |
| CTATTGTTTCTAGTGTGAAG+GGG | 0.596042 | tig0028749:+25005 | Msa1439370:intergenic |
| TAGGCTTCTTTACTGTAAAG+GGG | 0.596259 | tig0028749:-31260 | Msa1439370:CDS |
| ATTGTTACATCTGCAACAGT+TGG | 0.597254 | tig0028749:-27800 | Msa1439370:CDS |
| CACGATAAGACGGTCAGTGT+GGG | 0.598843 | tig0028749:-25322 | Msa1439370:CDS |
| TCCTTCAAGAAGAGAAACGA+TGG | 0.600405 | tig0028749:+27037 | Msa1439370:intergenic |
| CCTGTAACTAACCAATGACC+AGG | 0.600926 | tig0028749:+25135 | Msa1439370:intergenic |
| GCAAAGTCATATTAAATGGG+TGG | 0.601409 | tig0028749:-27105 | Msa1439370:CDS |
| AGCCAAGCATTCTTTGCACA+GGG | 0.606581 | tig0028749:-24984 | Msa1439370:three_prime_UTR |
| TATGAATCAATAGTTTAGCA+AGG | 0.610403 | tig0028749:+25062 | Msa1439370:intergenic |
| TTGTCATCGCAGGTAACAGT+TGG | 0.611875 | tig0028749:-25702 | Msa1439370:intron |
| GACCGTCTTATCGTGCACCC+TGG | 0.616200 | tig0028749:+25330 | Msa1439370:intergenic |
| GGAAATCCAAGAAATACTGT+AGG | 0.618343 | tig0028749:+26524 | Msa1439370:intergenic |
| AATAACTCGAGTTTGGGCGC+CGG | 0.628765 | tig0028749:-26500 | Msa1439370:CDS |
| GAATTGTTGAATGAATAGGT+TGG | 0.635137 | tig0028749:+31461 | Msa1439370:intergenic |
| GGATCATAACCCTTCCACTC+CGG | 0.636730 | tig0028749:-25301 | Msa1439370:CDS |
| GCACGATAAGACGGTCAGTG+TGG | 0.639402 | tig0028749:-25323 | Msa1439370:CDS |
| GTGCAGCTGCCGGAGTGGAA+GGG | 0.640888 | tig0028749:+25292 | Msa1439370:intergenic |
| GCAGCTGCACACAAATCAGA+CGG | 0.644603 | tig0028749:-25279 | Msa1439370:CDS |
| ATAGGTGCTCCCAAATGGCA+AGG | 0.645874 | tig0028749:-25552 | Msa1439370:CDS |
| TACCAGGGTGCACGATAAGA+CGG | 0.647747 | tig0028749:-25332 | Msa1439370:CDS |
| AATCGGTGCAGTGCTTACAT+GGG | 0.651985 | tig0028749:+25476 | Msa1439370:intergenic |
| TGGAATGAAATATCCAACCA+TGG | 0.654312 | tig0028749:+28978 | Msa1439370:intergenic |
| CAATGACCAGGAATATCTTG+CGG | 0.654789 | tig0028749:+25147 | Msa1439370:intergenic |
| ATAGAATTGAAGCTTCCAAG+TGG | 0.657356 | tig0028749:+29054 | Msa1439370:intergenic |
| ACCAAACAGCTACTTCAACA+AGG | 0.661372 | tig0028749:-31485 | Msa1439370:five_prime_UTR |
| GCTGCAAATGAATTGCGAGT+CGG | 0.663551 | tig0028749:+25628 | Msa1439370:intergenic |
| TTTGTGTGCAGCTGCCGGAG+TGG | 0.665993 | tig0028749:+25287 | Msa1439370:intergenic |
| CCTTCAAGAAGAGAAACGAT+GGG | 0.671747 | tig0028749:+27038 | Msa1439370:intergenic |
| GCCATGTGTGCATCCCAATG+TGG | 0.674737 | tig0028749:+25576 | Msa1439370:intergenic |
| AGATGAACAAGCCTAGACCC+AGG | 0.692616 | tig0028749:+31235 | Msa1439370:intergenic |
| TGGTGTTCATATTGTCACTG+GGG | 0.695069 | tig0028749:-25421 | Msa1439370:CDS |
| TAGGCTTGTTCATCTCGATG+AGG | 0.698566 | tig0028749:-31227 | Msa1439370:CDS |
| GATAACTGAAACCAACATTG+GGG | 0.738432 | tig0028749:-25451 | Msa1439370:CDS |
| TGACAATATGAACACCAGAG+AGG | 0.757497 | tig0028749:+25427 | Msa1439360:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTTATTTGTGTA+TGG | - | tig0028749:25428-25447 | Msa1439370:CDS | 10.0% |
| !!! | AAATTTTTAAAAAAGCAATT+GGG | + | tig0028749:26982-27001 | Msa1439370:intergenic | 10.0% |
| !!! | AAAATTTTTAAAAAAGCAAT+TGG | + | tig0028749:26983-27002 | Msa1439370:intergenic | 10.0% |
| !! | TAAATTAACAAAACAAAATT+TGG | - | tig0028749:27386-27405 | Msa1439370:intron | 10.0% |
| !! | AAAAAAAAAACAAATTCAAA+GGG | + | tig0028749:31304-31323 | Msa1439370:intergenic | 10.0% |
| !! | AAAAAAAAAAACAAATTCAA+AGG | + | tig0028749:31305-31324 | Msa1439370:intergenic | 10.0% |
| !!! | ATTAAATTTTGTTGATTTAA+TGG | - | tig0028749:31466-31485 | Msa1439370:five_prime_UTR | 10.0% |
| !! | TCCAATATAAAAAGTTAATA+TGG | - | tig0028749:25657-25676 | Msa1439370:CDS | 15.0% |
| !!! | ACCATATTAACTTTTTATAT+TGG | + | tig0028749:25661-25680 | Msa1439370:intergenic | 15.0% |
| !!! | TTTTTTTATAGGAATTTTAG+TGG | + | tig0028749:27669-27688 | Msa1439370:intergenic | 15.0% |
| !! | AAAAAATAAGATTAAGAATC+TGG | + | tig0028749:28191-28210 | Msa1439370:intergenic | 15.0% |
| !!! | AAAAGAGTTTTTTTTTTTGA+GGG | - | tig0028749:28379-28398 | Msa1439370:intron | 15.0% |
| !! | TACAAATTCATATAATAACT+GGG | + | tig0028749:29593-29612 | Msa1439370:intergenic | 15.0% |
| !! | TGTTAAATATAGTAGAATTT+AGG | + | tig0028749:29954-29973 | Msa1439370:intergenic | 15.0% |
| !! | AAATTCTACTATATTTAACA+TGG | - | tig0028749:29954-29973 | Msa1439370:intron | 15.0% |
| !!! | ATTACAAGTTTTATTTGAAT+TGG | - | tig0028749:30159-30178 | Msa1439370:intron | 15.0% |
| !!! | ATTTTTAGTTATTTAGTTGA+TGG | - | tig0028749:31408-31427 | Msa1439370:five_prime_UTR | 15.0% |
| !! | AGATTGAGAAGAAAATAAAT+GGG | + | tig0028749:24903-24922 | Msa1439370:intergenic | 20.0% |
| !!! | CAAAAAAGTTCAGTTTTTTA+TGG | + | tig0028749:24929-24948 | Msa1439370:intergenic | 20.0% |
| !! | TTCTCTATAACAAATGATTA+TGG | - | tig0028749:24950-24969 | Msa1439370:three_prime_UTR | 20.0% |
| !!! | TATTTTATTTGTGTATGGAT+TGG | - | tig0028749:25433-25452 | Msa1439370:CDS | 20.0% |
| !! | ATTAGATGAGATAATATGAA+TGG | - | tig0028749:25942-25961 | Msa1439370:intron | 20.0% |
| !!! | TTTTAGCATATTAATTCCTT+TGG | - | tig0028749:25965-25984 | Msa1439370:intron | 20.0% |
| !! | TTTAGCATATTAATTCCTTT+GGG | - | tig0028749:25966-25985 | Msa1439370:intron | 20.0% |
| !! | CTTCTTAAAATTACAAAACA+TGG | - | tig0028749:26415-26434 | Msa1439370:CDS | 20.0% |
| !!! | TTCAAATTTTATGTCAACAT+TGG | + | tig0028749:26760-26779 | Msa1439370:intergenic | 20.0% |
| !!! | TGAACTTGTAAAAATGATTT+TGG | - | tig0028749:26776-26795 | Msa1439370:intron | 20.0% |
| !! | TGATTTCAAAACAAATAGAT+AGG | + | tig0028749:26831-26850 | Msa1439370:intergenic | 20.0% |
| !! | TATATATCTTCAATCAAATG+AGG | + | tig0028749:27148-27167 | Msa1439370:intergenic | 20.0% |
| !! | ACACTTAAGATATAATATCA+TGG | - | tig0028749:27585-27604 | Msa1439370:intron | 20.0% |
| !!! | ATTTTAGTGGTTAATTTGTT+AGG | + | tig0028749:27656-27675 | Msa1439370:intergenic | 20.0% |
| !!! | GCTGAAATTACTTTTTTTAT+AGG | + | tig0028749:27680-27699 | Msa1439370:intergenic | 20.0% |
| !! | TTAATTAGTTAAACAACACA+AGG | + | tig0028749:27832-27851 | Msa1439370:intergenic | 20.0% |
| !!! | TTTGAAAAGCTCTTTATTTT+AGG | + | tig0028749:27988-28007 | Msa1439370:intergenic | 20.0% |
| !!! | TATTTTGATGATAACACAAA+AGG | - | tig0028749:28054-28073 | Msa1439370:intron | 20.0% |
| !!! | TTTTCTTTTGAGATTTTAAG+GGG | + | tig0028749:28363-28382 | Msa1439370:intergenic | 20.0% |
| !!! | CTTTTCTTTTGAGATTTTAA+GGG | + | tig0028749:28364-28383 | Msa1439370:intergenic | 20.0% |
| !!! | TCTTTTCTTTTGAGATTTTA+AGG | + | tig0028749:28365-28384 | Msa1439370:intergenic | 20.0% |
| !!! | GAAAAGAGTTTTTTTTTTTG+AGG | - | tig0028749:28378-28397 | Msa1439370:intron | 20.0% |
| !!! | AAAGAGTTTTTTTTTTTGAG+GGG | - | tig0028749:28380-28399 | Msa1439370:intron | 20.0% |
| !!! | ATTCTATTTGCTAGTTTATA+TGG | - | tig0028749:28438-28457 | Msa1439370:intron | 20.0% |
| !!! | TTGTATATTTTCACAGTAAT+GGG | + | tig0028749:28728-28747 | Msa1439370:intergenic | 20.0% |
| !! | TTCTGATTATTAATGAAACT+TGG | - | tig0028749:28758-28777 | Msa1439370:intron | 20.0% |
| !! | CTACAAATTCATATAATAAC+TGG | + | tig0028749:29594-29613 | Msa1439370:intergenic | 20.0% |
| !! | CAGTTATTATATGAATTTGT+AGG | - | tig0028749:29592-29611 | Msa1439370:intron | 20.0% |
| !! | TTTGTCTGTTTAATATAAGA+GGG | + | tig0028749:29772-29791 | Msa1439370:intergenic | 20.0% |
| !! | ATATCAGATTATGTCAAAAA+AGG | - | tig0028749:29977-29996 | Msa1439370:intron | 20.0% |
| !! | ACTCAAAGTTAAATGAATTA+TGG | - | tig0028749:30117-30136 | Msa1439370:intron | 20.0% |
| !! | AAAGTTAAATGAATTATGGT+AGG | - | tig0028749:30121-30140 | Msa1439370:intron | 20.0% |
| !! | AAGTTAAATGAATTATGGTA+GGG | - | tig0028749:30122-30141 | Msa1439370:intron | 20.0% |
| !! | ATAGACTATAGATTATAACT+TGG | - | tig0028749:30467-30486 | Msa1439370:intron | 20.0% |
| ! | AGTTGAATTGTTGAATGAAT+AGG | + | tig0028749:24876-24895 | Msa1439370:intergenic | 25.0% |
| ! | GAGATTGAGAAGAAAATAAA+TGG | + | tig0028749:24904-24923 | Msa1439370:intergenic | 25.0% |
| ! | TTGATGTTACATCAGATATT+AGG | - | tig0028749:25051-25070 | Msa1439370:exon | 25.0% |
| ! | TCAATATCCAAAGAAACATT+AGG | + | tig0028749:25170-25189 | Msa1439370:intergenic | 25.0% |
| !! | AAGATAAAATAAAGCCTTGT+TGG | + | tig0028749:26246-26265 | Msa1439370:intergenic | 25.0% |
| !!! | TGTTTTTTCACACAAAAGAA+AGG | + | tig0028749:26327-26346 | Msa1439370:intergenic | 25.0% |
| ! | AATCAGTCTCTTAGAATTTA+TGG | - | tig0028749:26846-26865 | Msa1439370:intron | 25.0% |
| !!! | TTTTTAAAAAAGCAATTGGG+CGG | + | tig0028749:26979-26998 | Msa1439370:intergenic | 25.0% |
| !! | GTTAATTTAACTTCGAATAG+TGG | + | tig0028749:27375-27394 | Msa1439370:intergenic | 25.0% |
| ! | ATATATAGCAGTTTATGTTC+TGG | - | tig0028749:27722-27741 | Msa1439370:CDS | 25.0% |
| ! | TTCACAAAGAAATATTCAAG+GGG | + | tig0028749:27889-27908 | Msa1439370:intergenic | 25.0% |
| ! | CTTCACAAAGAAATATTCAA+GGG | + | tig0028749:27890-27909 | Msa1439370:intergenic | 25.0% |
| ! | ACTTCACAAAGAAATATTCA+AGG | + | tig0028749:27891-27910 | Msa1439370:intergenic | 25.0% |
| !! | TCATCCTTTTTATTCTTCTT+AGG | - | tig0028749:27955-27974 | Msa1439370:intron | 25.0% |
| ! | GTTTCCTAAGAAGAATAAAA+AGG | + | tig0028749:27962-27981 | Msa1439370:intergenic | 25.0% |
| !!! | CTCAGTTTTATTGAGAATTA+TGG | - | tig0028749:28500-28519 | Msa1439370:intron | 25.0% |
| ! | TTAAGGACATTGAAAATGAT+AGG | - | tig0028749:28624-28643 | Msa1439370:intron | 25.0% |
| !! | TGTATATTTTCACAGTAATG+GGG | + | tig0028749:28727-28746 | Msa1439370:intergenic | 25.0% |
| !! | GTTGTATATTTTCACAGTAA+TGG | + | tig0028749:28729-28748 | Msa1439370:intergenic | 25.0% |
| ! | TTAATAATCAGAAGCAGAAA+AGG | + | tig0028749:28751-28770 | Msa1439370:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | tig0028749:28853-28872 | Msa1439370:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | tig0028749:28854-28873 | Msa1439370:intergenic | 25.0% |
| !! | AACATTTTCTATTGTCAGTT+TGG | + | tig0028749:29086-29105 | Msa1439370:intergenic | 25.0% |
| ! | TTGAGCAAAGTCATATTAAA+TGG | - | tig0028749:29221-29240 | Msa1439370:intron | 25.0% |
| ! | TGAGCAAAGTCATATTAAAT+GGG | - | tig0028749:29222-29241 | Msa1439370:intron | 25.0% |
| ! | AACTTCATGTTAATAATGTC+TGG | + | tig0028749:29268-29287 | Msa1439370:intergenic | 25.0% |
| ! | TGATATTATAACTGATCCTA+GGG | + | tig0028749:29453-29472 | Msa1439370:intergenic | 25.0% |
| ! | ATGATATTATAACTGATCCT+AGG | + | tig0028749:29454-29473 | Msa1439370:intergenic | 25.0% |
| ! | TATAAACTGCAATATCAATC+AGG | - | tig0028749:29485-29504 | Msa1439370:intron | 25.0% |
| ! | AACTTTATGAATTTACGATG+AGG | - | tig0028749:29529-29548 | Msa1439370:intron | 25.0% |
| ! | GAATTTGTAGGAAAAAGTTA+TGG | - | tig0028749:29604-29623 | Msa1439370:intron | 25.0% |
| ! | TTGTCTGTTTAATATAAGAG+GGG | + | tig0028749:29771-29790 | Msa1439370:intergenic | 25.0% |
| ! | GTTTGTCTGTTTAATATAAG+AGG | + | tig0028749:29773-29792 | Msa1439370:intergenic | 25.0% |
| !! | GATTTTCAACAATAAGACAT+AGG | + | tig0028749:30197-30216 | Msa1439370:intergenic | 25.0% |
| ! | CTGGTAGTAATTTAAGAAAA+TGG | - | tig0028749:30290-30309 | Msa1439370:intron | 25.0% |
| !!! | TTTGAGGTGTAATACATTTT+TGG | + | tig0028749:30962-30981 | Msa1439370:intergenic | 25.0% |
| ! | AAAAAGGAAAAATTGTACTC+AGG | - | tig0028749:31235-31254 | Msa1439370:CDS | 25.0% |
| ! | TATGAATCAATAGTTTAGCA+AGG | + | tig0028749:31271-31290 | Msa1439370:intergenic | 25.0% |
| ! | AAAAAAACAAATTCAAAGGG+AGG | + | tig0028749:31301-31320 | Msa1439370:intergenic | 25.0% |
| GAATTGTTGAATGAATAGGT+TGG | + | tig0028749:24872-24891 | Msa1439370:intergenic | 30.0% | |
| ATTAGGCTTCTTTACTGTAA+AGG | - | tig0028749:25068-25087 | Msa1439370:CDS | 30.0% | |
| TTAGGCTTCTTTACTGTAAA+GGG | - | tig0028749:25069-25088 | Msa1439370:CDS | 30.0% | |
| TGTTGTTCCTAATGTTTCTT+TGG | - | tig0028749:25160-25179 | Msa1439370:CDS | 30.0% | |
| ! | CTTTTCAAAACTACAAACAG+GGG | + | tig0028749:25225-25244 | Msa1439370:intergenic | 30.0% |
| ! | CCTTTTCAAAACTACAAACA+GGG | + | tig0028749:25226-25245 | Msa1439370:intergenic | 30.0% |
| ! | ACCTTTTCAAAACTACAAAC+AGG | + | tig0028749:25227-25246 | Msa1439370:intergenic | 30.0% |
| !! | AAATGGCCAAGTATTGAATT+AGG | + | tig0028749:25502-25521 | Msa1439370:intergenic | 30.0% |
| CAAATCCTTACCTTACAAAT+CGG | - | tig0028749:25838-25857 | Msa1439370:intron | 30.0% | |
| ATCACATTGTTGATGTTGTA+AGG | - | tig0028749:25904-25923 | Msa1439370:intron | 30.0% | |
| ATTGTTGATGTTGTAAGGAA+TGG | - | tig0028749:25909-25928 | Msa1439370:intron | 30.0% | |
| CATATGATATGAGAGATAAC+TGG | + | tig0028749:26025-26044 | Msa1439370:intergenic | 30.0% | |
| !! | TTTTCTTTTTGGCATAGGAT+TGG | - | tig0028749:26062-26081 | Msa1439370:intron | 30.0% |
| CATGCACTTTAAATTGCAAT+AGG | + | tig0028749:26088-26107 | Msa1439370:intergenic | 30.0% | |
| ACTTACAGTGGTTATGTTAT+TGG | - | tig0028749:26296-26315 | Msa1439370:intron | 30.0% | |
| !! | TCATAGTATCTTAGCTCTAA+AGG | - | tig0028749:26350-26369 | Msa1439370:intron | 30.0% |
| ATAGTTTAGATGTGTGTGAT+TGG | - | tig0028749:26511-26530 | Msa1439370:CDS | 30.0% | |
| ATAGTATCAGAGAAAGACAT+AGG | + | tig0028749:26692-26711 | Msa1439370:intergenic | 30.0% | |
| AGTCTCTTAGAATTTATGGT+TGG | - | tig0028749:26850-26869 | Msa1439370:intron | 30.0% | |
| GTCTCTTAGAATTTATGGTT+GGG | - | tig0028749:26851-26870 | Msa1439370:intron | 30.0% | |
| !! | TGACGACTAAATTTTTCAGA+TGG | - | tig0028749:27212-27231 | Msa1439370:intron | 30.0% |
| TGGCAGAATATTTCAATGAA+AGG | - | tig0028749:27232-27251 | Msa1439370:intron | 30.0% | |
| GAATATTTCAATGAAAGGTC+AGG | - | tig0028749:27237-27256 | Msa1439370:intron | 30.0% | |
| ATAGAAGGAAAAATTCCACT+TGG | - | tig0028749:27261-27280 | Msa1439370:intron | 30.0% | |
| AATTCTATGTTCAACTTCAC+TGG | - | tig0028749:27291-27310 | Msa1439370:intron | 30.0% | |
| ! | CTTTCTGCAGAAAATGATTT+TGG | - | tig0028749:27509-27528 | Msa1439370:intron | 30.0% |
| GCATAAAATCTAAGAACATC+AGG | + | tig0028749:27535-27554 | Msa1439370:intergenic | 30.0% | |
| !! | TTAGTGGTTAATTTGTTAGG+AGG | + | tig0028749:27653-27672 | Msa1439370:intergenic | 30.0% |
| ! | TTTATGTTCTGGATTAGAAG+TGG | - | tig0028749:27733-27752 | Msa1439370:CDS | 30.0% |
| !! | TTGAGATTTTAAGGGGAAAT+GGG | + | tig0028749:28356-28375 | Msa1439370:intergenic | 30.0% |
| !! | TTTGAGATTTTAAGGGGAAA+TGG | + | tig0028749:28357-28376 | Msa1439370:intergenic | 30.0% |
| TCAATAAAACTGAGAAGCAA+GGG | + | tig0028749:28494-28513 | Msa1439370:intergenic | 30.0% | |
| TGTTGCAGATGTAACAATAT+GGG | + | tig0028749:28528-28547 | Msa1439370:intergenic | 30.0% | |
| TTAACATAGTTCTCAATGTC+CGG | + | tig0028749:28608-28627 | Msa1439370:intergenic | 30.0% | |
| GAGAAGGTTAGTATTAAGAA+TGG | - | tig0028749:28695-28714 | Msa1439370:intron | 30.0% | |
| !!! | ACAGTCATTTTTAGAAGAAG+AGG | - | tig0028749:29187-29206 | Msa1439370:intron | 30.0% |
| !! | TCATTTTTAGAAGAAGAGGA+GGG | - | tig0028749:29191-29210 | Msa1439370:intron | 30.0% |
| !! | CTATTTCATGAGTTGTTTTC+AGG | + | tig0028749:29637-29656 | Msa1439370:intergenic | 30.0% |
| CTGAAAACAACTCATGAAAT+AGG | - | tig0028749:29635-29654 | Msa1439370:intron | 30.0% | |
| AAGAAATTGAGCTTGAAAAC+TGG | - | tig0028749:29668-29687 | Msa1439370:intron | 30.0% | |
| AGAAATTGAGCTTGAAAACT+GGG | - | tig0028749:29669-29688 | Msa1439370:intron | 30.0% | |
| ATACTAGACATGACAATTTC+TGG | - | tig0028749:29698-29717 | Msa1439370:intron | 30.0% | |
| AAATACTGTAGGTCTTCAAT+AGG | + | tig0028749:29798-29817 | Msa1439370:intergenic | 30.0% | |
| ATTTCCAAATAACTCGAGTT+TGG | - | tig0028749:29823-29842 | Msa1439370:intron | 30.0% | |
| TTTCCAAATAACTCGAGTTT+GGG | - | tig0028749:29824-29843 | Msa1439370:intron | 30.0% | |
| GCAGAATAATCTACAAAGAA+AGG | - | tig0028749:29854-29873 | Msa1439370:intron | 30.0% | |
| ATAAACACATGAGTCAGTAT+CGG | - | tig0028749:30325-30344 | Msa1439370:intron | 30.0% | |
| TGTAGCAAATGTGATAAATG+TGG | + | tig0028749:30526-30545 | Msa1439370:intergenic | 30.0% | |
| TTGGTTTCAGTTATCTCAAT+CGG | + | tig0028749:30874-30893 | Msa1439370:intergenic | 30.0% | |
| AGATAACTGAAACCAACATT+GGG | - | tig0028749:30878-30897 | Msa1439370:intron | 30.0% | |
| ACATGACAGAAATGTCAAAA+GGG | - | tig0028749:31160-31179 | Msa1439370:CDS | 30.0% | |
| TAGGCTTCTTTACTGTAAAG+GGG | - | tig0028749:25070-25089 | Msa1439370:CDS | 35.0% | |
| ATCTCGATGAGGAACATAAT+AGG | - | tig0028749:25114-25133 | Msa1439370:CDS | 35.0% | |
| TCTCGATGAGGAACATAATA+GGG | - | tig0028749:25115-25134 | Msa1439370:CDS | 35.0% | |
| !! | TTGGATATTGATTTCTCTCG+TGG | - | tig0028749:25179-25198 | Msa1439370:CDS | 35.0% |
| !! | TGGATATTGATTTCTCTCGT+GGG | - | tig0028749:25180-25199 | Msa1439370:CDS | 35.0% |
| !!! | CCCTGTTTGTAGTTTTGAAA+AGG | - | tig0028749:25223-25242 | Msa1439370:CDS | 35.0% |
| TTGAGAAGTGAATATCTCAC+AGG | - | tig0028749:25290-25309 | Msa1439370:CDS | 35.0% | |
| GCATTGCCTAATTCAATACT+TGG | - | tig0028749:25493-25512 | Msa1439370:CDS | 35.0% | |
| ! | CCTTTAGAAGATGCAATGAA+CGG | + | tig0028749:25525-25544 | Msa1439370:intergenic | 35.0% |
| CGTTCATTGCATCTTCTAAA+GGG | - | tig0028749:25523-25542 | Msa1439370:CDS | 35.0% | |
| AATCCTCAATACTTGGATGA+AGG | - | tig0028749:25609-25628 | Msa1439370:CDS | 35.0% | |
| ! | AAACCTTCATCCAAGTATTG+AGG | + | tig0028749:25615-25634 | Msa1439370:intergenic | 35.0% |
| !! | CAAAACCGATTTGTAAGGTA+AGG | + | tig0028749:25846-25865 | Msa1439370:intergenic | 35.0% |
| !! | CCTAACAAAACCGATTTGTA+AGG | + | tig0028749:25851-25870 | Msa1439370:intergenic | 35.0% |
| !!! | CCTTACAAATCGGTTTTGTT+AGG | - | tig0028749:25848-25867 | Msa1439370:intron | 35.0% |
| ACTCCAATTTCAGGAAACTA+GGG | + | tig0028749:25993-26012 | Msa1439370:intergenic | 35.0% | |
| AACTCCAATTTCAGGAAACT+AGG | + | tig0028749:25994-26013 | Msa1439370:intergenic | 35.0% | |
| TAGTTTCCTGAAATTGGAGT+TGG | - | tig0028749:25993-26012 | Msa1439370:intron | 35.0% | |
| AATCATCCAACTCCAATTTC+AGG | + | tig0028749:26002-26021 | Msa1439370:intergenic | 35.0% | |
| ! | CTCAAGCTGCATTTTCTTTT+TGG | - | tig0028749:26051-26070 | Msa1439370:intron | 35.0% |
| !! | CTGCATTTTCTTTTTGGCAT+AGG | - | tig0028749:26057-26076 | Msa1439370:intron | 35.0% |
| AACAAACTCTGTCATGGTAA+AGG | - | tig0028749:26109-26128 | Msa1439370:intron | 35.0% | |
| !! | GTAAAGGTGCAAATTGGTTT+TGG | - | tig0028749:26125-26144 | Msa1439370:intron | 35.0% |
| ! | TGATTTATCTAGCTCCAACA+AGG | - | tig0028749:26229-26248 | Msa1439370:intron | 35.0% |
| ACTGTAAGTAGACACTTTGT+TGG | + | tig0028749:26285-26304 | Msa1439370:intergenic | 35.0% | |
| ! | AACAAAGTGTCTACTTACAG+TGG | - | tig0028749:26284-26303 | Msa1439370:intron | 35.0% |
| !! | TAGCTCTAAAGGATGTTGAA+AGG | - | tig0028749:26361-26380 | Msa1439370:intron | 35.0% |
| ATTAGAGAATCTTCCATGGT+TGG | - | tig0028749:26385-26404 | Msa1439370:intron | 35.0% | |
| AAGAAGAATTTAGCCAACCA+TGG | + | tig0028749:26401-26420 | Msa1439370:intergenic | 35.0% | |
| CATGATAATAAGTCGAAGAG+TGG | - | tig0028749:26453-26472 | Msa1439370:CDS | 35.0% | |
| GCGAATCATTGGAAAATGTA+GGG | - | tig0028749:26480-26499 | Msa1439370:CDS | 35.0% | |
| TATTGTCAAAGTTACTTCCG+AGG | - | tig0028749:26546-26565 | Msa1439370:CDS | 35.0% | |
| ! | TTTGTTGTCATGTGACTGAA+AGG | - | tig0028749:26592-26611 | Msa1439370:intron | 35.0% |
| !!! | GGGAACTATGGTTAGTTTTA+TGG | - | tig0028749:26646-26665 | Msa1439370:intron | 35.0% |
| ATAGAATTGAAGCTTCCAAG+TGG | + | tig0028749:27279-27298 | Msa1439370:intergenic | 35.0% | |
| TGGAATGAAATATCCAACCA+TGG | + | tig0028749:27355-27374 | Msa1439370:intergenic | 35.0% | |
| ! | AAAATTAGCTTACCTAGCCA+AGG | + | tig0028749:27463-27482 | Msa1439370:intergenic | 35.0% |
| CACAGAGTCTACTTCTAAAT+TGG | - | tig0028749:27559-27578 | Msa1439370:intron | 35.0% | |
| !! | GGGGAAATTTGTTAACAACA+GGG | + | tig0028749:27629-27648 | Msa1439370:intergenic | 35.0% |
| !! | AGGGGAAATTTGTTAACAAC+AGG | + | tig0028749:27630-27649 | Msa1439370:intergenic | 35.0% |
| !! | TGGTTAATTTGTTAGGAGGA+GGG | + | tig0028749:27649-27668 | Msa1439370:intergenic | 35.0% |
| ACTAAGAGTTATAGAGTCTC+AGG | - | tig0028749:27913-27932 | Msa1439370:intron | 35.0% | |
| GAACAATTCAGACAAAGTTG+TGG | + | tig0028749:28021-28040 | Msa1439370:intergenic | 35.0% | |
| CAACTTTGTCTGAATTGTTC+AGG | - | tig0028749:28021-28040 | Msa1439370:intron | 35.0% | |
| CTTACGCATCTAAAAGACAA+TGG | - | tig0028749:28243-28262 | Msa1439370:intron | 35.0% | |
| TGGGATCAATCAACTTAAGT+CGG | + | tig0028749:28326-28345 | Msa1439370:intergenic | 35.0% | |
| AGGGGAAATGGGAAAAAAAT+GGG | + | tig0028749:28345-28364 | Msa1439370:intergenic | 35.0% | |
| AAGGGGAAATGGGAAAAAAA+TGG | + | tig0028749:28346-28365 | Msa1439370:intergenic | 35.0% | |
| !!! | GTTTTTTTTTTTGAGGGGAG+AGG | - | tig0028749:28385-28404 | Msa1439370:intron | 35.0% |
| CTCAATAAAACTGAGAAGCA+AGG | + | tig0028749:28495-28514 | Msa1439370:intergenic | 35.0% | |
| CTGTTGCAGATGTAACAATA+TGG | + | tig0028749:28529-28548 | Msa1439370:intergenic | 35.0% | |
| ATTGTTACATCTGCAACAGT+TGG | - | tig0028749:28530-28549 | Msa1439370:intron | 35.0% | |
| GGACATTGAGAACTATGTTA+AGG | - | tig0028749:28607-28626 | Msa1439370:intron | 35.0% | |
| CTTGATGCAAAAAACACATC+AGG | - | tig0028749:28650-28669 | Msa1439370:intron | 35.0% | |
| !! | TGCTTTGAAGTACAAAGAGA+AGG | - | tig0028749:28679-28698 | Msa1439370:intron | 35.0% |
| !! | TAGCCTTGTGCATTTATTTC+TGG | - | tig0028749:28808-28827 | Msa1439370:intron | 35.0% |
| TTGCCAGAAATAAATGCACA+AGG | + | tig0028749:28814-28833 | Msa1439370:intergenic | 35.0% | |
| TATCTACTGACATATGCACT+TGG | + | tig0028749:29046-29065 | Msa1439370:intergenic | 35.0% | |
| ! | TCTTTTCATTATGTCACTGC+AGG | - | tig0028749:29159-29178 | Msa1439370:intron | 35.0% |
| !!! | GTCATTTTTAGAAGAAGAGG+AGG | - | tig0028749:29190-29209 | Msa1439370:intron | 35.0% |
| !! | CATTTTTAGAAGAAGAGGAG+GGG | - | tig0028749:29192-29211 | Msa1439370:intron | 35.0% |
| GCAAAGTCATATTAAATGGG+TGG | - | tig0028749:29225-29244 | Msa1439370:intron | 35.0% | |
| ATGGGTGGAAACTGTAAAAT+TGG | - | tig0028749:29240-29259 | Msa1439370:intron | 35.0% | |
| AACTTTGCAGCAATAGTGAT+TGG | + | tig0028749:29380-29399 | Msa1439370:intergenic | 35.0% | |
| ! | AAAGTTGATCTTGTTACCTC+TGG | - | tig0028749:29394-29413 | Msa1439370:intron | 35.0% |
| TAAATGTCAGCTGCATGTTT+AGG | - | tig0028749:29564-29583 | Msa1439370:intron | 35.0% | |
| AAATGTCAGCTGCATGTTTA+GGG | - | tig0028749:29565-29584 | Msa1439370:intron | 35.0% | |
| TGAAGACCTACAGTATTTCT+TGG | - | tig0028749:29800-29819 | Msa1439370:intron | 35.0% | |
| GGAAATCCAAGAAATACTGT+AGG | + | tig0028749:29809-29828 | Msa1439370:intergenic | 35.0% | |
| CTTTGTAGATTATTCTGCTC+CGG | + | tig0028749:29852-29871 | Msa1439370:intergenic | 35.0% | |
| AACTGAAGAGATTGACAAAC+AGG | + | tig0028749:29882-29901 | Msa1439370:intergenic | 35.0% | |
| ATCTCTTCAGTTCAGCTTAA+TGG | - | tig0028749:29890-29909 | Msa1439370:intron | 35.0% | |
| TCTCTTCAGTTCAGCTTAAT+GGG | - | tig0028749:29891-29910 | Msa1439370:intron | 35.0% | |
| TTAGGAAACAATACCTGATC+TGG | + | tig0028749:29936-29955 | Msa1439370:intergenic | 35.0% | |
| !! | GATTTTTCAGAAACCTCAGA+CGG | - | tig0028749:30083-30102 | Msa1439370:intron | 35.0% |
| CTATGTGTTAGAGTTGTGTT+TGG | + | tig0028749:30267-30286 | Msa1439370:intergenic | 35.0% | |
| ! | GCATTGATACTTGAGATTGA+AGG | + | tig0028749:30363-30382 | Msa1439370:intergenic | 35.0% |
| ! | CTCCTATTTTATCTGTGCAT+CGG | + | tig0028749:30396-30415 | Msa1439370:intergenic | 35.0% |
| GATGCACAGATAAAATAGGA+GGG | - | tig0028749:30395-30414 | Msa1439370:intron | 35.0% | |
| ! | TAGTTTGTGTAGTTGAGTTC+AGG | - | tig0028749:30498-30517 | Msa1439370:intron | 35.0% |
| ! | ATTTGATCGGTTCAAACCAA+CGG | + | tig0028749:30822-30841 | Msa1439370:intergenic | 35.0% |
| GAGAAGTTCTTCCATTTGAT+CGG | + | tig0028749:30835-30854 | Msa1439370:intergenic | 35.0% | |
| GAGATAACTGAAACCAACAT+TGG | - | tig0028749:30877-30896 | Msa1439370:intron | 35.0% | |
| GATAACTGAAACCAACATTG+GGG | - | tig0028749:30879-30898 | Msa1439370:intron | 35.0% | |
| CCTTAGAGAAAAGTAGTTTG+AGG | + | tig0028749:30978-30997 | Msa1439370:intergenic | 35.0% | |
| !! | CCTCAAACTACTTTTCTCTA+AGG | - | tig0028749:30975-30994 | Msa1439370:intron | 35.0% |
| !!! | TACTTTTCTCTAAGGTACCA+GGG | - | tig0028749:30983-31002 | Msa1439370:intron | 35.0% |
| GACATGACAGAAATGTCAAA+AGG | - | tig0028749:31159-31178 | Msa1439370:CDS | 35.0% | |
| !! | CTATTGTTTCTAGTGTGAAG+GGG | + | tig0028749:31328-31347 | Msa1439370:intergenic | 35.0% |
| !! | GCTATTGTTTCTAGTGTGAA+GGG | + | tig0028749:31329-31348 | Msa1439370:intergenic | 35.0% |
| !! | TTTAGTTGATGGTGATGCAA+TGG | - | tig0028749:31419-31438 | Msa1439370:five_prime_UTR | 35.0% |
| ATGAGCATAGTGACATTATG+AGG | - | tig0028749:31492-31511 | Msa1439370:five_prime_UTR | 35.0% | |
| ACCAAACAGCTACTTCAACA+AGG | - | tig0028749:24845-24864 | Msa1439370:three_prime_UTR | 40.0% | |
| ACCTTGTTGAAGTAGCTGTT+TGG | + | tig0028749:24849-24868 | Msa1439370:intergenic | 40.0% | |
| TTGCAACTCAATCCAAGCTT+TGG | - | tig0028749:25019-25038 | Msa1439370:three_prime_UTR | 40.0% | |
| TGCAACTCAATCCAAGCTTT+GGG | - | tig0028749:25020-25039 | Msa1439370:three_prime_UTR | 40.0% | |
| GAAGTGAATATCTCACAGGA+AGG | - | tig0028749:25294-25313 | Msa1439370:CDS | 40.0% | |
| GAAGATGCAATGAACGGAAA+TGG | + | tig0028749:25519-25538 | Msa1439370:intergenic | 40.0% | |
| CCGTTCATTGCATCTTCTAA+AGG | - | tig0028749:25522-25541 | Msa1439370:CDS | 40.0% | |
| CATGTTAAGAGTCCCACAAT+TGG | - | tig0028749:25552-25571 | Msa1439370:CDS | 40.0% | |
| TCAGACCATCATCCAATTGT+GGG | + | tig0028749:25567-25586 | Msa1439370:intergenic | 40.0% | |
| TTCAGACCATCATCCAATTG+TGG | + | tig0028749:25568-25587 | Msa1439370:intergenic | 40.0% | |
| ! | ATTGGATGATGGTCTGAACA+TGG | - | tig0028749:25570-25589 | Msa1439370:CDS | 40.0% |
| ! | TTGGATGATGGTCTGAACAT+GGG | - | tig0028749:25571-25590 | Msa1439370:CDS | 40.0% |
| TGAACATGGGTTTATCAGTG+AGG | - | tig0028749:25584-25603 | Msa1439370:CDS | 40.0% | |
| GAACATGGGTTTATCAGTGA+GGG | - | tig0028749:25585-25604 | Msa1439370:CDS | 40.0% | |
| GTGTGTTAAGAGTCCTACAT+TGG | - | tig0028749:25779-25798 | Msa1439370:intron | 40.0% | |
| GTCCTACATTGGATGAGTTA+TGG | - | tig0028749:25790-25809 | Msa1439370:intron | 40.0% | |
| AGCCATAACTCATCCAATGT+AGG | + | tig0028749:25795-25814 | Msa1439370:intergenic | 40.0% | |
| ! | ATGAGTTATGGCTTGCACAT+GGG | - | tig0028749:25802-25821 | Msa1439370:intron | 40.0% |
| TGCACATGGGTTTATAAGTG+AGG | - | tig0028749:25815-25834 | Msa1439370:intron | 40.0% | |
| ! | GTCATGGTAAAGGTGCAAAT+TGG | - | tig0028749:26119-26138 | Msa1439370:intron | 40.0% |
| TGGTCAAGCAGAACATTATC+AGG | - | tig0028749:26145-26164 | Msa1439370:intron | 40.0% | |
| GGTCAAGCAGAACATTATCA+GGG | - | tig0028749:26146-26165 | Msa1439370:intron | 40.0% | |
| CAGAACATTATCAGGGAGTT+TGG | - | tig0028749:26153-26172 | Msa1439370:intron | 40.0% | |
| CATTCAGAGCTTGACAAGTA+AGG | + | tig0028749:26189-26208 | Msa1439370:intergenic | 40.0% | |
| AGGCATTAGAGAATCTTCCA+TGG | - | tig0028749:26381-26400 | Msa1439370:intron | 40.0% | |
| TAATAAGTCGAAGAGTGGTG+TGG | - | tig0028749:26458-26477 | Msa1439370:CDS | 40.0% | |
| GGCGAATCATTGGAAAATGT+AGG | - | tig0028749:26479-26498 | Msa1439370:CDS | 40.0% | |
| AAATAGCCTCATGGGAACTA+TGG | - | tig0028749:26634-26653 | Msa1439370:intron | 40.0% | |
| AACTAACCATAGTTCCCATG+AGG | + | tig0028749:26643-26662 | Msa1439370:intergenic | 40.0% | |
| TTAAAAAAGCAATTGGGCGG+TGG | + | tig0028749:26976-26995 | Msa1439370:intergenic | 40.0% | |
| GATAATTAAGAGTCCCACGT+TGG | + | tig0028749:27120-27139 | Msa1439370:intergenic | 40.0% | |
| AATGAAAGGTCAGGCATAGA+AGG | - | tig0028749:27246-27265 | Msa1439370:intron | 40.0% | |
| AACCATGGCAAGTGATTTAG+TGG | + | tig0028749:27340-27359 | Msa1439370:intergenic | 40.0% | |
| ACTAAATCACTTGCCATGGT+TGG | - | tig0028749:27339-27358 | Msa1439370:intron | 40.0% | |
| !! | GGTTAATTTGTTAGGAGGAG+GGG | + | tig0028749:27648-27667 | Msa1439370:intergenic | 40.0% |
| !! | GTGGTTAATTTGTTAGGAGG+AGG | + | tig0028749:27650-27669 | Msa1439370:intergenic | 40.0% |
| ! | TGTTCTGGATTAGAAGTGGT+TGG | - | tig0028749:27737-27756 | Msa1439370:CDS | 40.0% |
| CAGACAAAGTTGTGGTCATT+TGG | + | tig0028749:28013-28032 | Msa1439370:intergenic | 40.0% | |
| ATGATAACACAAAAGGCTCC+TGG | - | tig0028749:28061-28080 | Msa1439370:intron | 40.0% | |
| ! | GGACAGAGTCAAGTTCTAAT+CGG | - | tig0028749:28459-28478 | Msa1439370:intron | 40.0% |
| GTGCAGACAAAGAAGATGAT+TGG | + | tig0028749:28586-28605 | Msa1439370:intergenic | 40.0% | |
| ATCATCTTCTTTGTCTGCAC+CGG | - | tig0028749:28586-28605 | Msa1439370:intron | 40.0% | |
| TCTTTGTACTTCAAAGCAGC+GGG | + | tig0028749:28677-28696 | Msa1439370:intergenic | 40.0% | |
| CTCTTTGTACTTCAAAGCAG+CGG | + | tig0028749:28678-28697 | Msa1439370:intergenic | 40.0% | |
| !! | TTTTCACAGTAATGGGGAAG+AGG | + | tig0028749:28721-28740 | Msa1439370:intergenic | 40.0% |
| CACTCTATTTATGCCCTGTT+TGG | - | tig0028749:28837-28856 | Msa1439370:intron | 40.0% | |
| TGACATATGCACTTGGAGAA+TGG | + | tig0028749:29039-29058 | Msa1439370:intergenic | 40.0% | |
| CCTTCAAGAAGAGAAACGAT+GGG | + | tig0028749:29295-29314 | Msa1439370:intergenic | 40.0% | |
| TCCTTCAAGAAGAGAAACGA+TGG | + | tig0028749:29296-29315 | Msa1439370:intergenic | 40.0% | |
| ! | TCTCTTCTTGAAGGAGTACA+TGG | - | tig0028749:29301-29320 | Msa1439370:intron | 40.0% |
| ! | AGTACATGGCGTAAAGCTTT+TGG | - | tig0028749:29315-29334 | Msa1439370:intron | 40.0% |
| CTCTGGCAATAGTTATGCTA+GGG | - | tig0028749:29411-29430 | Msa1439370:intron | 40.0% | |
| TACTGTAGGTCTTCAATAGG+AGG | + | tig0028749:29795-29814 | Msa1439370:intergenic | 40.0% | |
| TCTGGACTGACAAAAAGCTT+AGG | + | tig0028749:29918-29937 | Msa1439370:intergenic | 40.0% | |
| TGTATGTGTCAGTGCTTCAT+AGG | + | tig0028749:30238-30257 | Msa1439370:intergenic | 40.0% | |
| CAACTCTAACACATAGACAC+TGG | - | tig0028749:30271-30290 | Msa1439370:intron | 40.0% | |
| ! | CTTGAGATTGAAGGTGTGTT+TGG | + | tig0028749:30354-30373 | Msa1439370:intergenic | 40.0% |
| GTCCGATGCACAGATAAAAT+AGG | - | tig0028749:30391-30410 | Msa1439370:intron | 40.0% | |
| CGATGCACAGATAAAATAGG+AGG | - | tig0028749:30394-30413 | Msa1439370:intron | 40.0% | |
| ! | AATGTGGTTGGAGGTTTTTC+GGG | + | tig0028749:30741-30760 | Msa1439370:intergenic | 40.0% |
| ! | CAATGTGGTTGGAGGTTTTT+CGG | + | tig0028749:30742-30761 | Msa1439370:intergenic | 40.0% |
| GAAAAACCTCCAACCACATT+GGG | - | tig0028749:30741-30760 | Msa1439370:intron | 40.0% | |
| !! | GTTGGTTTGAACCGATCAAA+TGG | - | tig0028749:30821-30840 | Msa1439370:intron | 40.0% |
| TGACAATATGAACACCAGAG+AGG | + | tig0028749:30906-30925 | Msa1439370:intergenic | 40.0% | |
| TCTGGTGTTCATATTGTCAC+TGG | - | tig0028749:30907-30926 | Msa1439370:intron | 40.0% | |
| CTGGTGTTCATATTGTCACT+GGG | - | tig0028749:30908-30927 | Msa1439370:intron | 40.0% | |
| TGGTGTTCATATTGTCACTG+GGG | - | tig0028749:30909-30928 | Msa1439370:intron | 40.0% | |
| !!! | CTACTTTTCTCTAAGGTACC+AGG | - | tig0028749:30982-31001 | Msa1439370:intron | 40.0% |
| GAAAACCACTGACGAGAAAA+AGG | - | tig0028749:31095-31114 | Msa1439370:intron | 40.0% | |
| ! | ATCTTCCTTTTTCTCGTCAG+TGG | + | tig0028749:31103-31122 | Msa1439370:intergenic | 40.0% |
| ! | TTTTCGCGAGTTTTCCAATG+TGG | + | tig0028749:31134-31153 | Msa1439370:intergenic | 40.0% |
| TGGAAAACTCGCGAAAATTG+TGG | - | tig0028749:31137-31156 | Msa1439370:CDS | 40.0% | |
| CAATGACCAGGAATATCTTG+CGG | + | tig0028749:31186-31205 | Msa1439370:intergenic | 40.0% | |
| ! | CTGGTCATTGGTTAGTTACA+GGG | - | tig0028749:31196-31215 | Msa1439370:CDS | 40.0% |
| ! | TGGTCATTGGTTAGTTACAG+GGG | - | tig0028749:31197-31216 | Msa1439370:CDS | 40.0% |
| GCTAAGCTTGGAGTAGAAAA+AGG | - | tig0028749:31219-31238 | Msa1439370:CDS | 40.0% | |
| !! | GGCTATTGTTTCTAGTGTGA+AGG | + | tig0028749:31330-31349 | Msa1439370:intergenic | 40.0% |
| !! | TTTACTGTAAAGGGGCACCT+GGG | - | tig0028749:25078-25097 | Msa1439370:CDS | 45.0% |
| ! | TAGGCTTGTTCATCTCGATG+AGG | - | tig0028749:25103-25122 | Msa1439370:CDS | 45.0% |
| GATTTCTCTCGTGGGAAAAG+TGG | - | tig0028749:25188-25207 | Msa1439370:CDS | 45.0% | |
| AGAGTCCCACAATTGGATGA+TGG | - | tig0028749:25559-25578 | Msa1439370:CDS | 45.0% | |
| TGAGGGCAATCCTCAATACT+TGG | - | tig0028749:25602-25621 | Msa1439370:CDS | 45.0% | |
| TGGCTCAACGGATCTTTGAT+AGG | + | tig0028749:25691-25710 | Msa1439370:intergenic | 45.0% | |
| ! | ATCTATCAGGTGACGGCTAT+CGG | - | tig0028749:25713-25732 | Msa1439370:intron | 45.0% |
| ! | CGCTTTAGATGTCTAGTCCT+AGG | - | tig0028749:25740-25759 | Msa1439370:intron | 45.0% |
| ! | GATGAGTTATGGCTTGCACA+TGG | - | tig0028749:25801-25820 | Msa1439370:intron | 45.0% |
| GGTCCCTAGTTTCCTGAAAT+TGG | - | tig0028749:25987-26006 | Msa1439370:intron | 45.0% | |
| GCATGCAACAAACTCTGTCA+TGG | - | tig0028749:26103-26122 | Msa1439370:intron | 45.0% | |
| CACTTTGTTGGAAATCGCAG+AGG | + | tig0028749:26273-26292 | Msa1439370:intergenic | 45.0% | |
| TGTCAAAGTTACTTCCGAGG+AGG | - | tig0028749:26549-26568 | Msa1439370:intron | 45.0% | |
| ACAAATTTACCGTTGCGCCA+AGG | + | tig0028749:26577-26596 | Msa1439370:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | - | tig0028749:26598-26617 | Msa1439370:intron | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | - | tig0028749:26599-26618 | Msa1439370:intron | 45.0% | |
| ATGTCCTGGAAATAGCCTCA+TGG | - | tig0028749:26625-26644 | Msa1439370:intron | 45.0% | |
| TGTCCTGGAAATAGCCTCAT+GGG | - | tig0028749:26626-26645 | Msa1439370:intron | 45.0% | |
| TGAACAAGTGTGTATAGCGG+GGG | + | tig0028749:27084-27103 | Msa1439370:intergenic | 45.0% | |
| CTGAACAAGTGTGTATAGCG+GGG | + | tig0028749:27085-27104 | Msa1439370:intergenic | 45.0% | |
| CCTGAACAAGTGTGTATAGC+GGG | + | tig0028749:27086-27105 | Msa1439370:intergenic | 45.0% | |
| GCCTGAACAAGTGTGTATAG+CGG | + | tig0028749:27087-27106 | Msa1439370:intergenic | 45.0% | |
| !! | CAACTTCACTGGCTCTTCAA+TGG | - | tig0028749:27302-27321 | Msa1439370:intron | 45.0% |
| AGCCACTAAATCACTTGCCA+TGG | - | tig0028749:27335-27354 | Msa1439370:intron | 45.0% | |
| ! | TGGCCTTGAATGATGAAGTC+AGG | - | tig0028749:27406-27425 | Msa1439370:intron | 45.0% |
| TAACACAAAAGGCTCCTGGT+TGG | - | tig0028749:28065-28084 | Msa1439370:intron | 45.0% | |
| !!! | TTTTTTTGAGGGGAGAGGAG+AGG | - | tig0028749:28390-28409 | Msa1439370:intron | 45.0% |
| !!! | TTTTTTGAGGGGAGAGGAGA+GGG | - | tig0028749:28391-28410 | Msa1439370:intron | 45.0% |
| GTTACATCTGCAACAGTTGG+TGG | - | tig0028749:28533-28552 | Msa1439370:intron | 45.0% | |
| GCAGAGACGTCGTGTATATT+AGG | - | tig0028749:28555-28574 | Msa1439370:intron | 45.0% | |
| CTTGGAGAATGGAGACTGTT+TGG | + | tig0028749:29028-29047 | Msa1439370:intergenic | 45.0% | |
| ATTAGTAGCGTGACAGTCTG+AGG | + | tig0028749:29126-29145 | Msa1439370:intergenic | 45.0% | |
| CCCATCGTTTCTCTTCTTGA+AGG | - | tig0028749:29292-29311 | Msa1439370:intron | 45.0% | |
| CCTAGCATAACTATTGCCAG+AGG | + | tig0028749:29413-29432 | Msa1439370:intergenic | 45.0% | |
| CCTCTGGCAATAGTTATGCT+AGG | - | tig0028749:29410-29429 | Msa1439370:intron | 45.0% | |
| TAATGAGCTCATTCAGCCCT+AGG | - | tig0028749:29434-29453 | Msa1439370:intron | 45.0% | |
| ! | GCTTTTTGTCAGTCCAGATC+AGG | - | tig0028749:29920-29939 | Msa1439370:intron | 45.0% |
| GTGTTACAATGAACCGTCTG+AGG | + | tig0028749:30099-30118 | Msa1439370:intergenic | 45.0% | |
| CTCTAGACTACAAGTGAGTG+AGG | - | tig0028749:30593-30612 | Msa1439370:intron | 45.0% | |
| TTACCTGCGATGACAAGTCA+TGG | + | tig0028749:30624-30643 | Msa1439370:intergenic | 45.0% | |
| TTGTCATCGCAGGTAACAGT+TGG | - | tig0028749:30628-30647 | Msa1439370:intron | 45.0% | |
| ! | GGTTCTGTTTGTTGCCTTCT+AGG | + | tig0028749:30684-30703 | Msa1439370:intergenic | 45.0% |
| GCTGCAAATGAATTGCGAGT+CGG | + | tig0028749:30705-30724 | Msa1439370:intergenic | 45.0% | |
| CGAAAAACCTCCAACCACAT+TGG | - | tig0028749:30740-30759 | Msa1439370:intron | 45.0% | |
| AATCGGTGCAGTGCTTACAT+GGG | + | tig0028749:30857-30876 | Msa1439370:intergenic | 45.0% | |
| GAAGATAGTTCCGTCCACAT+TGG | - | tig0028749:31117-31136 | Msa1439370:CDS | 45.0% | |
| CGCAAGATATTCCTGGTCAT+TGG | - | tig0028749:31184-31203 | Msa1439370:CDS | 45.0% | |
| CCTGTAACTAACCAATGACC+AGG | + | tig0028749:31198-31217 | Msa1439370:intergenic | 45.0% | |
| ! | CCTGGTCATTGGTTAGTTAC+AGG | - | tig0028749:31195-31214 | Msa1439370:CDS | 45.0% |
| TTAGTTACAGGGGCTAAGCT+TGG | - | tig0028749:31207-31226 | Msa1439370:CDS | 45.0% | |
| TAGCCAAGCATTCTTTGCAC+AGG | - | tig0028749:31345-31364 | Msa1439370:CDS | 45.0% | |
| AGCCAAGCATTCTTTGCACA+GGG | - | tig0028749:31346-31365 | Msa1439370:CDS | 45.0% | |
| TTCCCTGTGCAAAGAATGCT+TGG | + | tig0028749:31351-31370 | Msa1439370:intergenic | 45.0% | |
| !!! | TTAATTAAGTTTTTTTATAT+TGG | + | tig0028749:25885-25904 | Msa1439370:intergenic | 5.0% |
| !! | TCAATCCAAGCTTTGGGTCG+TGG | - | tig0028749:25026-25045 | Msa1439370:three_prime_UTR | 50.0% |
| CAAAACCACGACCCAAAGCT+TGG | + | tig0028749:25034-25053 | Msa1439370:intergenic | 50.0% | |
| !! | CTTTACTGTAAAGGGGCACC+TGG | - | tig0028749:25077-25096 | Msa1439370:CDS | 50.0% |
| AGATGAACAAGCCTAGACCC+AGG | + | tig0028749:25098-25117 | Msa1439370:intergenic | 50.0% | |
| ! | CCTGATAGATGGTGGCTCAA+CGG | + | tig0028749:25703-25722 | Msa1439370:intergenic | 50.0% |
| AGCCACCATCTATCAGGTGA+CGG | - | tig0028749:25706-25725 | Msa1439370:intron | 50.0% | |
| GATAGCCGTCACCTGATAGA+TGG | + | tig0028749:25714-25733 | Msa1439370:intergenic | 50.0% | |
| ! | TCTATCAGGTGACGGCTATC+GGG | - | tig0028749:25714-25733 | Msa1439370:intron | 50.0% |
| TCAGGAAACTAGGGACCCAA+AGG | + | tig0028749:25984-26003 | Msa1439370:intergenic | 50.0% | |
| AGAGTGGTGTGGCGAATCAT+TGG | - | tig0028749:26469-26488 | Msa1439370:CDS | 50.0% | |
| ! | GTTCCCATGAGGCTATTTCC+AGG | + | tig0028749:26632-26651 | Msa1439370:intergenic | 50.0% |
| CTAACACAACCCCGCTAAAC+CGG | - | tig0028749:26875-26894 | Msa1439370:intron | 50.0% | |
| !! | TAAACCGGCTTGTGAGGTGA+TGG | - | tig0028749:26890-26909 | Msa1439370:intron | 50.0% |
| TACGGGAGAGAATCCCAATC+CGG | + | tig0028749:26920-26939 | Msa1439370:intergenic | 50.0% | |
| CTGTCCAGTGAAAAGGCTAC+GGG | + | tig0028749:26937-26956 | Msa1439370:intergenic | 50.0% | |
| CCTGTCCAGTGAAAAGGCTA+CGG | + | tig0028749:26938-26957 | Msa1439370:intergenic | 50.0% | |
| ! | CGTAGCCTTTTCACTGGACA+GGG | - | tig0028749:26936-26955 | Msa1439370:intron | 50.0% |
| GCACTGTAGAGTCAAACGAG+TGG | - | tig0028749:27008-27027 | Msa1439370:CDS | 50.0% | |
| CCCGCTATACACACTTGTTC+AGG | - | tig0028749:27083-27102 | Msa1439370:CDS | 50.0% | |
| GCGCCTGACTTCATCATTCA+AGG | + | tig0028749:27412-27431 | Msa1439370:intergenic | 50.0% | |
| GATGCTGGATCCCAAGAGTA+AGG | + | tig0028749:27441-27460 | Msa1439370:intergenic | 50.0% | |
| TGTGTTTGTCTCAGCCAACC+AGG | + | tig0028749:28082-28101 | Msa1439370:intergenic | 50.0% | |
| !! | TTTTTGAGGGGAGAGGAGAG+GGG | - | tig0028749:28392-28411 | Msa1439370:intron | 50.0% |
| GCGCCCAAACTCGAGTTATT+TGG | + | tig0028749:29830-29849 | Msa1439370:intergenic | 50.0% | |
| AATAACTCGAGTTTGGGCGC+CGG | - | tig0028749:29830-29849 | Msa1439370:intron | 50.0% | |
| ! | ACACCATGACTTGTCATCGC+AGG | - | tig0028749:30618-30637 | Msa1439370:intron | 50.0% |
| TTCTAGGCTCAGCCTTAGTC+CGG | + | tig0028749:30668-30687 | Msa1439370:intergenic | 50.0% | |
| TGTGTGCATCCCAATGTGGT+TGG | + | tig0028749:30753-30772 | Msa1439370:intergenic | 50.0% | |
| ACCACATTGGGATGCACACA+TGG | - | tig0028749:30753-30772 | Msa1439370:intron | 50.0% | |
| !! | TTGCCATTTGGGAGCACCTA+TGG | + | tig0028749:30779-30798 | Msa1439370:intergenic | 50.0% |
| ATAGGTGCTCCCAAATGGCA+AGG | - | tig0028749:30778-30797 | Msa1439370:intron | 50.0% | |
| CAATCGGTGCAGTGCTTACA+TGG | + | tig0028749:30858-30877 | Msa1439370:intergenic | 50.0% | |
| TACCAGGGTGCACGATAAGA+CGG | - | tig0028749:30998-31017 | Msa1439370:intron | 50.0% | |
| CACGATAAGACGGTCAGTGT+GGG | - | tig0028749:31008-31027 | Msa1439370:intron | 50.0% | |
| GGATCATAACCCTTCCACTC+CGG | - | tig0028749:31029-31048 | Msa1439370:intron | 50.0% | |
| ! | TCTGATTTGTGTGCAGCTGC+CGG | + | tig0028749:31051-31070 | Msa1439370:intergenic | 50.0% |
| GCAGCTGCACACAAATCAGA+CGG | - | tig0028749:31051-31070 | Msa1439370:intron | 50.0% | |
| AGACGGTGCTTCGTCATCAT+CGG | - | tig0028749:31068-31087 | Msa1439370:intron | 50.0% | |
| ! | CGCGAGTTTTCCAATGTGGA+CGG | + | tig0028749:31130-31149 | Msa1439370:intergenic | 50.0% |
| AAAGGGCCGCAAGATATTCC+TGG | - | tig0028749:31177-31196 | Msa1439370:CDS | 50.0% | |
| CCGTTGAGCCACCATCTATC+AGG | - | tig0028749:25700-25719 | Msa1439370:intron | 55.0% | |
| AGCCGTCACCTGATAGATGG+TGG | + | tig0028749:25711-25730 | Msa1439370:intergenic | 55.0% | |
| GATGTCTAGTCCTAGGCGTG+AGG | - | tig0028749:25747-25766 | Msa1439370:intron | 55.0% | |
| CACACACATACCTCACGCCT+AGG | + | tig0028749:25760-25779 | Msa1439370:intergenic | 55.0% | |
| TTACTTCCGAGGAGGAGCCT+TGG | - | tig0028749:26557-26576 | Msa1439370:intron | 55.0% | |
| AAGGTCACGGGTTCATGTCC+TGG | - | tig0028749:26611-26630 | Msa1439370:intron | 55.0% | |
| CGGTTTAGCGGGGTTGTGTT+AGG | + | tig0028749:26877-26896 | Msa1439370:intergenic | 55.0% | |
| ! | ACCTCACAAGCCGGTTTAGC+GGG | + | tig0028749:26888-26907 | Msa1439370:intergenic | 55.0% |
| ! | CACCTCACAAGCCGGTTTAG+CGG | + | tig0028749:26889-26908 | Msa1439370:intergenic | 55.0% |
| GCAACCATCACCTCACAAGC+CGG | + | tig0028749:26897-26916 | Msa1439370:intergenic | 55.0% | |
| ! | CTTGTGAGGTGATGGTTGCC+CGG | - | tig0028749:26898-26917 | Msa1439370:intron | 55.0% |
| ! | AGGTGATGGTTGCCCGGATT+GGG | - | tig0028749:26904-26923 | Msa1439370:intron | 55.0% |
| ACGGGAGAGAATCCCAATCC+GGG | + | tig0028749:26919-26938 | Msa1439370:intergenic | 55.0% | |
| ! | CTCTCCCGTAGCCTTTTCAC+TGG | - | tig0028749:26930-26949 | Msa1439370:intron | 55.0% |
| ! | CCGTAGCCTTTTCACTGGAC+AGG | - | tig0028749:26935-26954 | Msa1439370:intron | 55.0% |
| CTGCACCCTGTCCAGTGAAA+AGG | + | tig0028749:26944-26963 | Msa1439370:intergenic | 55.0% | |
| TTTCACTGGACAGGGTGCAG+TGG | - | tig0028749:26944-26963 | Msa1439370:intron | 55.0% | |
| TGCAGTGACTGGAGTCCAGT+GGG | + | tig0028749:27041-27060 | Msa1439370:intergenic | 55.0% | |
| ACTGGACTCCAGTCACTGCA+GGG | - | tig0028749:27041-27060 | Msa1439370:CDS | 55.0% | |
| AACAGATCCCCTGCAGTGAC+TGG | + | tig0028749:27052-27071 | Msa1439370:intergenic | 55.0% | |
| AGGCCAGATCACTTCCAACG+TGG | - | tig0028749:27103-27122 | Msa1439370:CDS | 55.0% | |
| GGCCAGATCACTTCCAACGT+GGG | - | tig0028749:27104-27123 | Msa1439370:CDS | 55.0% | |
| GTCCCACGTTGGAAGTGATC+TGG | + | tig0028749:27109-27128 | Msa1439370:intergenic | 55.0% | |
| GCGCGCTGTTCCTTACTCTT+GGG | - | tig0028749:27428-27447 | Msa1439370:intron | 55.0% | |
| CTCTTGGGATCCAGCATCCT+TGG | - | tig0028749:27443-27462 | Msa1439370:intron | 55.0% | |
| GCTTACCTAGCCAAGGATGC+TGG | + | tig0028749:27456-27475 | Msa1439370:intergenic | 55.0% | |
| GGACTAAGGCTGAGCCTAGA+AGG | - | tig0028749:30667-30686 | Msa1439370:intron | 55.0% | |
| GTGCATCCCAATGTGGTTGG+AGG | + | tig0028749:30750-30769 | Msa1439370:intergenic | 55.0% | |
| GCCATGTGTGCATCCCAATG+TGG | + | tig0028749:30757-30776 | Msa1439370:intergenic | 55.0% | |
| TGGGATGCACACATGGCCAT+AGG | - | tig0028749:30760-30779 | Msa1439370:intron | 55.0% | |
| TGGCCATAGGTGCTCCCAAA+TGG | - | tig0028749:30773-30792 | Msa1439370:intron | 55.0% | |
| TGCTCCCAAATGGCAAGGTC+CGG | - | tig0028749:30783-30802 | Msa1439370:intron | 55.0% | |
| ! | TCCTCCGGACCTTGCCATTT+GGG | + | tig0028749:30790-30809 | Msa1439370:intergenic | 55.0% |
| ACCAACATTGGGGACCTCTC+TGG | - | tig0028749:30889-30908 | Msa1439370:intron | 55.0% | |
| ACCAGAGAGGTCCCCAATGT+TGG | + | tig0028749:30893-30912 | Msa1439370:intergenic | 55.0% | |
| ATTGTCACTGGGGCCCAACT+CGG | - | tig0028749:30919-30938 | Msa1439370:intron | 55.0% | |
| GAAGTCCCAAACGCCGAGTT+GGG | + | tig0028749:30935-30954 | Msa1439370:intergenic | 55.0% | |
| ! | CAACTCGGCGTTTGGGACTT+CGG | - | tig0028749:30934-30953 | Msa1439370:intron | 55.0% |
| GCACGATAAGACGGTCAGTG+TGG | - | tig0028749:31007-31026 | Msa1439370:intron | 55.0% | |
| !! | GTAAAGGGGCACCTGGGTCT+AGG | - | tig0028749:25084-25103 | Msa1439370:CDS | 60.0% |
| ! | CCTCACAAGCCGGTTTAGCG+GGG | + | tig0028749:26887-26906 | Msa1439370:intergenic | 60.0% |
| ! | GAGGTGATGGTTGCCCGGAT+TGG | - | tig0028749:26903-26922 | Msa1439370:intron | 60.0% |
| ACGAGTGGCTGAGATCCCAC+TGG | - | tig0028749:27023-27042 | Msa1439370:CDS | 60.0% | |
| CTGCAGTGACTGGAGTCCAG+TGG | + | tig0028749:27042-27061 | Msa1439370:intergenic | 60.0% | |
| CACTGGACTCCAGTCACTGC+AGG | - | tig0028749:27040-27059 | Msa1439370:CDS | 60.0% | |
| CTGGACTCCAGTCACTGCAG+GGG | - | tig0028749:27042-27061 | Msa1439370:CDS | 60.0% | |
| ACTGCAGGGGATCTGTTCCC+TGG | - | tig0028749:27055-27074 | Msa1439370:CDS | 60.0% | |
| ! | GTGTATAGCGGGGGCAACCA+GGG | + | tig0028749:27075-27094 | Msa1439370:intergenic | 60.0% |
| ! | TGTGTATAGCGGGGGCAACC+AGG | + | tig0028749:27076-27095 | Msa1439370:intergenic | 60.0% |
| GGCGCGCTGTTCCTTACTCT+TGG | - | tig0028749:27427-27446 | Msa1439370:intron | 60.0% | |
| GGGATCCAGCATCCTTGGCT+AGG | - | tig0028749:27448-27467 | Msa1439370:intron | 60.0% | |
| GTTGGACGCAAGCCTGTGAC+CGG | - | tig0028749:30646-30665 | Msa1439370:intron | 60.0% | |
| GCAAGCCTGTGACCGGACTA+AGG | - | tig0028749:30653-30672 | Msa1439370:intron | 60.0% | |
| CTCAGCCTTAGTCCGGTCAC+AGG | + | tig0028749:30661-30680 | Msa1439370:intergenic | 60.0% | |
| TCCCAAATGGCAAGGTCCGG+AGG | - | tig0028749:30786-30805 | Msa1439370:intron | 60.0% | |
| CTCCTCCGGACCTTGCCATT+TGG | + | tig0028749:30791-30810 | Msa1439370:intergenic | 60.0% | |
| CAACGGCTGTCTTGCTCCTC+CGG | + | tig0028749:30805-30824 | Msa1439370:intergenic | 60.0% | |
| CGAAGTCCCAAACGCCGAGT+TGG | + | tig0028749:30936-30955 | Msa1439370:intergenic | 60.0% | |
| GACCGTCTTATCGTGCACCC+TGG | + | tig0028749:31003-31022 | Msa1439370:intergenic | 60.0% | |
| TTTGTGTGCAGCTGCCGGAG+TGG | + | tig0028749:31046-31065 | Msa1439370:intergenic | 60.0% | |
| GTTGCGCCAAGGCTCCTCCT+CGG | + | tig0028749:26566-26585 | Msa1439370:intergenic | 65.0% | |
| GAGGAGGAGCCTTGGCGCAA+CGG | - | tig0028749:26565-26584 | Msa1439370:intron | 65.0% | |
| !! | CCCCGCTAAACCGGCTTGTG+AGG | - | tig0028749:26884-26903 | Msa1439370:intron | 65.0% |
| CGGAGGAGCAAGACAGCCGT+TGG | - | tig0028749:30803-30822 | Msa1439370:intron | 65.0% | |
| TGGGGCCCAACTCGGCGTTT+GGG | - | tig0028749:30927-30946 | Msa1439370:intron | 65.0% | |
| GTGCAGCTGCCGGAGTGGAA+GGG | + | tig0028749:31041-31060 | Msa1439370:intergenic | 65.0% | |
| TGTGCAGCTGCCGGAGTGGA+AGG | + | tig0028749:31042-31061 | Msa1439370:intergenic | 65.0% | |
| CTGGGGCCCAACTCGGCGTT+TGG | - | tig0028749:30926-30945 | Msa1439370:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028749 | gene | 24836 | 31516 | 24836 | ID=Msa1439370;Name=Msa1439370 |
| tig0028749 | mRNA | 24836 | 31516 | 24836 | ID=Msa1439370-mRNA-1;Parent=Msa1439370;Name=Msa1439370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=127|1|1|1|1|1|6|232|566 |
| tig0028749 | exon | 24836 | 25712 | 24836 | ID=Msa1439370-mRNA-1:exon:11743;Parent=Msa1439370-mRNA-1 |
| tig0028749 | exon | 26411 | 26565 | 26411 | ID=Msa1439370-mRNA-1:exon:11742;Parent=Msa1439370-mRNA-1 |
| tig0028749 | exon | 26988 | 27171 | 26988 | ID=Msa1439370-mRNA-1:exon:11741;Parent=Msa1439370-mRNA-1 |
| tig0028749 | exon | 27652 | 27847 | 27652 | ID=Msa1439370-mRNA-1:exon:11740;Parent=Msa1439370-mRNA-1 |
| tig0028749 | exon | 28883 | 29121 | 28883 | ID=Msa1439370-mRNA-1:exon:11739;Parent=Msa1439370-mRNA-1 |
| tig0028749 | exon | 31108 | 31516 | 31108 | ID=Msa1439370-mRNA-1:exon:11738;Parent=Msa1439370-mRNA-1 |
| tig0028749 | five_prime_UTR | 31390 | 31516 | 31390 | ID=Msa1439370-mRNA-1:five_prime_utr;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 31108 | 31389 | 31108 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 28883 | 29121 | 28883 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 27652 | 27847 | 27652 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 26988 | 27171 | 26988 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 26411 | 26565 | 26411 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | CDS | 25068 | 25712 | 25068 | ID=Msa1439370-mRNA-1:cds;Parent=Msa1439370-mRNA-1 |
| tig0028749 | three_prime_UTR | 24836 | 25067 | 24836 | ID=Msa1439370-mRNA-1:three_prime_utr;Parent=Msa1439370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
