AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041880 MtrunA17_Chr1g0207571 98.945 379 4 0 1 379 1 379 0.0 769
Msa0041880 MtrunA17_Chr1g0213351 58.735 332 127 2 17 340 28 357 2.30e-138 399
Msa0041880 MtrunA17_Chr1g0211251 53.743 374 158 3 2 362 9 380 1.59e-137 397
Msa0041880 MtrunA17_Chr7g0250061 51.459 377 161 3 6 362 1 375 7.68e-135 390
Msa0041880 MtrunA17_Chr8g0371321 55.455 330 137 2 17 338 27 354 3.51e-130 379
Msa0041880 MtrunA17_Chr1g0175381 54.969 322 142 1 18 339 36 354 4.52e-129 375
Msa0041880 MtrunA17_Chr2g0294291 53.538 325 148 2 16 339 30 352 1.23e-123 361
Msa0041880 MtrunA17_Chr7g0263281 54.683 331 140 2 16 338 18 346 2.02e-118 348
Msa0041880 MtrunA17_Chr1g0181901 50.140 357 139 4 20 339 27 381 7.80e-112 332
Msa0041880 MtrunA17_Chr3g0089711 46.875 320 159 5 27 339 33 348 3.20e-94 286
Msa0041880 MtrunA17_Chr3g0089721 46.875 320 159 5 27 339 33 348 4.97e-94 286
Msa0041880 MtrunA17_Chr7g0256751 47.040 321 157 6 27 339 34 349 2.95e-86 268
Msa0041880 MtrunA17_Chr7g0256771 47.744 266 132 4 27 289 35 296 6.89e-75 234
Msa0041880 MtrunA17_Chr3g0089691 43.357 286 152 4 81 360 2 283 3.18e-71 225
Msa0041880 MtrunA17_Chr4g0063111 35.326 368 216 9 20 379 34 387 1.37e-62 209
Msa0041880 MtrunA17_Chr4g0063051 33.437 323 175 10 23 339 22 310 4.55e-47 163
Msa0041880 MtrunA17_Chr7g0256761 44.444 180 79 4 163 337 17 180 8.48e-39 137
Msa0041880 MtrunA17_Chr7g0238501 31.208 298 172 10 61 338 263 547 9.17e-37 140
Msa0041880 MtrunA17_Chr2g0295991 34.241 257 149 6 98 344 237 483 1.35e-36 138
Msa0041880 MtrunA17_Chr4g0067301 31.274 259 156 7 98 344 246 494 1.30e-31 125
Msa0041880 MtrunA17_Chr4g0039061 30.137 292 180 7 61 338 202 483 3.15e-31 124
Msa0041880 MtrunA17_Chr1g0193691 29.085 306 154 5 99 346 592 892 1.19e-30 124
Msa0041880 MtrunA17_Chr4g0031521 31.769 277 147 7 98 338 426 696 4.75e-29 119
Msa0041880 MtrunA17_Chr4g0054811 29.412 306 159 6 95 348 478 778 1.48e-28 117
Msa0041880 MtrunA17_Chr3g0105351 29.930 284 135 9 61 340 94 317 4.44e-26 106
Msa0041880 MtrunA17_Chr3g0105371 29.825 285 136 8 60 340 117 341 2.51e-25 105
Msa0041880 MtrunA17_Chr4g0062951 33.161 193 103 7 95 271 1 183 6.87e-25 100
Msa0041880 MtrunA17_Chr1g0212961 29.412 289 133 9 61 346 126 346 1.09e-24 103
Msa0041880 MtrunA17_Chr5g0430481 28.269 283 141 8 61 340 154 377 1.36e-23 100
Msa0041880 MtrunA17_Chr1g0150451 29.617 287 133 9 63 344 110 332 2.51e-21 94.0
Msa0041880 MtrunA17_Chr3g0112291 26.453 344 190 13 29 345 78 385 1.13e-20 92.4
Msa0041880 MtrunA17_Chr4g0070871 30.453 243 113 8 57 286 249 448 1.39e-20 93.2
Msa0041880 MtrunA17_Chr3g0126511 28.163 245 125 7 46 283 106 306 1.61e-20 92.0
Msa0041880 MtrunA17_Chr3g0135961 28.947 304 153 12 54 337 279 539 3.36e-20 92.0
Msa0041880 MtrunA17_Chr3g0136711 29.252 294 140 10 63 352 67 296 4.54e-20 89.7
Msa0041880 MtrunA17_Chr1g0194191 29.316 307 139 11 54 343 112 357 1.59e-19 89.4
Msa0041880 MtrunA17_Chr2g0293811 28.819 288 151 9 54 337 94 331 3.39e-19 88.2
Msa0041880 MtrunA17_Chr5g0407161 27.986 293 135 13 57 339 121 347 1.49e-17 83.2
Msa0041880 MtrunA17_Chr4g0050381 28.322 286 139 10 36 306 32 266 2.96e-17 81.3
Msa0041880 MtrunA17_Chr4g0001761 27.113 284 131 9 46 284 35 287 3.57e-17 82.0
Msa0041880 MtrunA17_Chr3g0136811 26.316 285 132 9 46 284 35 287 5.89e-17 81.3
Msa0041880 MtrunA17_Chr5g0435721 28.017 232 124 6 61 284 223 419 1.06e-16 81.3
Msa0041880 MtrunA17_Chr2g0317021 27.500 280 130 10 64 337 120 332 1.63e-15 77.0
Msa0041880 MtrunA17_Chr1g0150071 27.341 267 126 7 58 284 49 287 2.44e-15 76.6
Msa0041880 MtrunA17_Chr5g0426141 25.974 308 155 11 36 335 37 279 4.46e-15 75.1
Msa0041880 MtrunA17_Chr1g0171571 27.273 297 144 11 52 337 409 644 5.43e-15 76.6
Msa0041880 MtrunA17_Chr1g0158781 28.390 236 127 5 61 294 145 340 7.64e-15 75.5
Msa0041880 MtrunA17_Chr4g0051661 25.952 289 139 11 31 300 149 381 1.23e-14 74.7
Msa0041880 MtrunA17_Chr2g0279151 25.733 307 157 12 36 335 36 278 2.06e-14 72.8
Msa0041880 MtrunA17_Chr3g0144111 27.273 286 117 12 57 335 24 225 3.18e-14 72.0
Msa0041880 MtrunA17_Chr8g0360351 25.965 285 155 11 28 302 29 267 9.17e-14 71.2
Msa0041880 MtrunA17_Chr3g0127091 27.755 245 137 7 60 284 88 312 1.98e-13 71.2
Msa0041880 MtrunA17_Chr3g0115851 26.433 314 146 13 36 335 37 279 5.46e-13 68.9
Msa0041880 MtrunA17_Chr4g0022171 24.405 336 191 13 54 360 89 390 2.15e-12 68.2
Msa0041880 MtrunA17_Chr8g0389921 26.222 225 118 6 61 278 198 381 2.32e-12 68.2
Msa0041880 MtrunA17_Chr6g0483411 24.138 319 165 11 46 340 56 321 7.86e-12 65.9
Msa0041880 MtrunA17_Chr2g0295401 26.073 303 155 13 62 337 93 353 1.09e-11 65.5
Msa0041880 MtrunA17_Chr7g0221691 33.129 163 85 6 142 301 245 386 1.29e-11 65.9
Msa0041880 MtrunA17_Chr7g0272061 25.949 316 150 16 61 337 91 361 5.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041880 AT4G33920.1 70.712 379 109 2 1 378 1 378 0.0 548
Msa0041880 AT4G33920.2 70.169 295 86 2 85 378 2 295 4.87e-147 418
Msa0041880 AT3G51370.1 54.648 355 148 3 1 344 8 360 4.14e-140 404
Msa0041880 AT3G51370.3 54.648 355 148 3 1 344 8 360 4.14e-140 404
Msa0041880 AT5G66080.1 56.196 347 141 2 16 353 28 372 7.68e-140 403
Msa0041880 AT3G12620.2 57.270 337 134 2 17 345 31 365 2.20e-135 392
Msa0041880 AT3G12620.1 57.270 337 134 2 17 345 31 365 2.20e-135 392
Msa0041880 AT4G33920.3 71.053 266 75 2 114 378 1 265 1.55e-133 383
Msa0041880 AT3G55050.1 57.447 329 130 2 17 337 32 358 2.39e-133 387
Msa0041880 AT3G55050.2 57.447 329 130 2 17 337 32 358 2.39e-133 387
Msa0041880 AT4G38520.2 53.955 354 153 2 17 362 29 380 1.07e-131 383
Msa0041880 AT4G38520.1 53.955 354 153 2 17 362 29 380 1.07e-131 383
Msa0041880 AT5G06750.3 57.053 319 136 1 22 339 43 361 3.59e-129 376
Msa0041880 AT5G06750.1 57.053 319 136 1 22 339 43 361 3.59e-129 376
Msa0041880 AT3G17090.1 54.985 331 144 3 22 351 45 371 5.04e-128 373
Msa0041880 AT5G02760.1 53.799 329 140 3 20 340 23 347 3.27e-117 345
Msa0041880 AT3G51370.2 55.797 276 114 3 74 344 3 275 2.90e-109 322
Msa0041880 AT5G66080.2 56.767 266 113 1 88 353 5 268 6.81e-109 321
Msa0041880 AT5G06750.2 57.200 250 106 1 91 339 30 279 3.08e-98 295
Msa0041880 AT3G17090.2 52.963 270 123 2 22 290 45 311 3.44e-98 295
Msa0041880 AT3G16560.1 33.858 254 154 5 98 345 245 490 2.73e-34 132
Msa0041880 AT3G16560.4 33.858 254 154 5 98 345 245 490 2.73e-34 132
Msa0041880 AT3G16560.2 33.858 254 154 5 98 345 245 490 2.73e-34 132
Msa0041880 AT5G02400.1 31.884 276 148 6 98 338 396 666 5.98e-33 130
Msa0041880 AT2G46920.3 28.479 309 157 5 99 348 543 846 3.04e-32 129
Msa0041880 AT2G46920.1 28.479 309 157 5 99 348 543 846 3.04e-32 129
Msa0041880 AT2G46920.2 28.479 309 157 5 99 348 543 846 3.04e-32 129
Msa0041880 AT2G46920.4 28.479 309 157 5 99 348 543 846 3.04e-32 129
Msa0041880 AT2G35350.1 28.328 293 157 5 93 337 483 770 9.85e-32 127
Msa0041880 AT2G28890.1 31.317 281 150 6 96 338 371 646 3.54e-31 125
Msa0041880 AT3G09400.1 32.090 268 144 7 100 338 384 642 1.07e-30 124
Msa0041880 AT1G07630.1 31.159 276 150 5 98 338 384 654 1.43e-30 123
Msa0041880 AT2G40180.1 30.142 282 135 9 61 337 161 385 4.23e-28 114
Msa0041880 AT1G67820.2 31.461 267 128 7 60 316 114 335 6.82e-28 114
Msa0041880 AT1G67820.1 31.461 267 128 7 60 316 150 371 1.05e-27 114
Msa0041880 AT3G16560.3 33.641 217 128 4 98 306 245 453 5.57e-26 108
Msa0041880 AT1G07160.1 29.000 300 148 9 46 337 134 376 9.70e-26 107
Msa0041880 AT2G30020.1 30.605 281 133 8 63 339 172 394 3.96e-23 100
Msa0041880 AT3G09400.2 29.851 268 145 10 100 337 384 638 6.69e-22 97.8
Msa0041880 AT4G31750.1 31.048 248 121 8 63 305 66 268 1.53e-21 94.4
Msa0041880 AT4G31750.3 31.048 248 121 8 63 305 66 268 1.53e-21 94.4
Msa0041880 AT4G31750.2 31.048 248 121 8 63 305 66 268 1.61e-21 94.4
Msa0041880 AT1G43900.1 29.893 281 129 10 61 338 154 369 9.84e-21 92.8
Msa0041880 AT1G07430.1 28.520 277 145 9 25 284 114 354 3.74e-20 92.0
Msa0041880 AT2G33700.1 28.767 292 139 11 51 335 113 342 4.73e-19 88.2
Msa0041880 AT2G29380.1 27.124 306 156 12 54 337 100 360 3.48e-18 85.5
Msa0041880 AT5G10740.1 27.536 276 133 8 63 335 66 277 8.85e-18 84.3
Msa0041880 AT5G10740.2 27.536 276 133 8 63 335 66 277 8.85e-18 84.3
Msa0041880 AT1G48040.1 29.730 296 152 10 54 343 110 355 2.33e-17 83.2
Msa0041880 AT3G62260.3 30.315 254 137 10 57 304 24 243 3.19e-17 81.6
Msa0041880 AT5G53140.1 26.531 294 148 10 63 353 134 362 5.68e-17 82.4
Msa0041880 AT5G53140.2 26.531 294 148 10 63 353 134 362 5.68e-17 82.4
Msa0041880 AT2G25620.1 26.408 284 154 11 57 337 125 356 5.84e-17 82.0
Msa0041880 AT2G25620.2 26.408 284 154 11 57 337 125 356 5.84e-17 82.0
Msa0041880 AT4G26080.1 29.153 295 153 13 58 337 169 422 7.43e-17 82.0
Msa0041880 AT3G62260.1 30.315 254 137 10 57 304 113 332 1.01e-16 81.3
Msa0041880 AT3G62260.2 30.315 254 137 10 57 304 114 333 1.03e-16 81.3
Msa0041880 AT5G51760.2 28.099 242 121 9 61 283 114 321 1.16e-16 81.3
Msa0041880 AT5G24940.1 27.536 276 133 8 63 335 66 277 1.40e-16 81.3
Msa0041880 AT5G51760.1 28.099 242 121 9 61 283 144 351 1.54e-16 80.9
Msa0041880 AT5G59220.1 28.333 240 125 8 54 284 141 342 1.65e-16 80.9
Msa0041880 AT1G18030.1 26.990 289 146 10 43 303 83 334 1.94e-15 77.4
Msa0041880 AT4G31860.3 25.818 275 120 11 58 284 49 287 3.62e-15 75.9
Msa0041880 AT4G31860.1 25.818 275 120 11 58 284 49 287 6.06e-15 75.9
Msa0041880 AT3G51470.2 24.658 292 159 10 47 335 48 281 7.90e-15 75.1
Msa0041880 AT3G51470.1 25.168 298 150 10 47 335 92 325 1.19e-14 75.1
Msa0041880 AT1G78200.1 25.649 308 159 10 36 335 35 280 1.92e-14 73.6
Msa0041880 AT1G78200.3 25.649 308 159 10 36 335 35 280 1.92e-14 73.6
Msa0041880 AT1G78200.2 25.649 308 159 10 36 335 35 280 1.92e-14 73.6
Msa0041880 AT3G16800.2 27.483 302 150 14 60 337 92 348 2.47e-14 73.9
Msa0041880 AT3G16800.1 27.483 302 150 14 60 337 92 348 2.47e-14 73.9
Msa0041880 AT3G16800.3 27.483 302 150 14 60 337 92 348 2.47e-14 73.9
Msa0041880 AT5G57050.1 25.597 293 167 11 58 337 157 411 2.68e-14 74.3
Msa0041880 AT5G57050.2 25.597 293 167 11 58 337 117 371 2.99e-14 73.9
Msa0041880 AT4G08260.1 26.715 277 116 8 63 339 21 210 4.24e-14 71.2
Msa0041880 AT2G40860.1 28.369 282 137 10 63 337 425 648 9.53e-14 73.2
Msa0041880 AT2G40860.4 28.369 282 137 10 63 337 327 550 1.05e-13 72.8
Msa0041880 AT3G16800.4 28.571 252 124 11 98 337 46 253 1.85e-13 70.1
Msa0041880 AT3G16800.6 28.571 252 124 11 98 337 46 253 1.85e-13 70.1
Msa0041880 AT4G28400.3 27.309 249 129 10 64 306 48 250 1.92e-13 70.1
Msa0041880 AT4G31860.2 26.236 263 110 11 58 272 49 275 2.58e-13 70.1
Msa0041880 AT4G28400.1 27.309 249 129 10 64 306 70 272 2.72e-13 70.1
Msa0041880 AT2G25070.1 26.277 274 118 12 59 284 50 287 3.71e-13 70.5
Msa0041880 AT2G25070.2 26.277 274 118 12 59 284 50 287 3.71e-13 70.5
Msa0041880 AT5G26010.1 26.441 295 174 10 52 337 64 324 4.76e-13 70.1
Msa0041880 AT2G40860.2 27.823 248 136 7 63 303 425 636 4.96e-13 70.9
Msa0041880 AT1G22280.3 26.855 283 153 11 36 306 36 276 8.46e-13 68.6
Msa0041880 AT5G01700.1 26.531 294 169 11 61 339 29 290 2.09e-12 68.2
Msa0041880 AT1G03590.1 26.361 349 186 14 54 371 83 391 2.09e-12 68.6
Msa0041880 AT1G18030.2 27.200 250 130 9 43 273 83 299 2.26e-12 67.8
Msa0041880 AT5G01700.2 26.531 294 169 11 61 339 78 339 2.97e-12 67.8
Msa0041880 AT1G78200.5 26.996 263 138 11 54 306 9 227 3.52e-12 66.2
Msa0041880 AT1G78200.4 26.996 263 138 11 54 306 9 227 3.52e-12 66.2
Msa0041880 AT1G17550.1 25.472 318 158 13 56 337 227 501 7.69e-12 67.0
Msa0041880 AT1G17550.2 25.472 318 158 13 56 337 227 501 7.69e-12 67.0
Msa0041880 AT4G27800.3 27.711 249 136 9 58 284 85 311 1.06e-11 65.9
Msa0041880 AT4G27800.2 27.711 249 136 9 58 284 85 311 1.22e-11 65.9
Msa0041880 AT1G72770.4 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
Msa0041880 AT1G72770.1 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
Msa0041880 AT1G72770.3 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
Msa0041880 AT2G34740.1 23.642 313 156 10 36 335 90 332 1.67e-11 65.5
Msa0041880 AT4G27800.1 27.106 273 155 9 58 308 85 335 1.79e-11 65.5

Find 141 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATAAGCTGACCTTATTT+TGG 0.149456 1_1:+72450468 Msa0041880:three_prime_UTR
CTGAACCATCAATCATTATT+AGG 0.184894 1_1:+72449956 Msa0041880:CDS
GTGGGATCATGTTGTCTTCT+TGG 0.195703 1_1:+72449235 Msa0041880:CDS
AGATACTGACTGTGTAAATA+AGG 0.264924 1_1:-72448623 None:intergenic
TTGGTAAGTTAAGAGAATTC+TGG 0.274260 1_1:+72450523 Msa0041880:three_prime_UTR
ACTAGTAAGAGCTGCTCTTC+AGG 0.291775 1_1:+72450191 Msa0041880:CDS
GATGGTTCAGCTGTCATTAC+TGG 0.293354 1_1:-72449943 None:intergenic
GACGCAATCTGAGGACTAAT+TGG 0.330240 1_1:-72449211 None:intergenic
TGCCGTGCTATTGAGATGTT+TGG 0.331181 1_1:+72451018 Msa0041880:three_prime_UTR
GGTGACTCTAGAGTTGTTCT+TGG 0.332422 1_1:+72449295 Msa0041880:CDS
TATAGATGATGATGGTGATT+AGG 0.354348 1_1:-72448301 None:intergenic
TATTTGCATCAGATGGCCTT+TGG 0.354565 1_1:+72450007 Msa0041880:CDS
TTAATTGATTAGTCCTTGTA+TGG 0.354606 1_1:+72450709 Msa0041880:three_prime_UTR
TTGACAAATCTAGAAGCTTC+AGG 0.361584 1_1:-72448587 None:intergenic
TTTAGAGAAAATATATCAAC+AGG 0.367089 1_1:-72450381 None:intergenic
TGAACCATCAATCATTATTA+GGG 0.384145 1_1:+72449957 Msa0041880:CDS
AAACAAAAGAGAAGAAGGAA+AGG 0.384883 1_1:+72448180 Msa0041880:five_prime_UTR
TCGTTGTCCAACTTGTGTTT+CGG 0.391265 1_1:+72451063 Msa0041880:three_prime_UTR
ATTTGCATCAGATGGCCTTT+GGG 0.407098 1_1:+72450008 Msa0041880:CDS
ACTGGACGCTTCAAAGGAAT+AGG 0.409207 1_1:-72449925 None:intergenic
TGGGTGAATGCCGCGTTTAG+AGG 0.409840 1_1:-72448236 None:intergenic
TGAAATGAAATGAAATGAAA+TGG 0.413367 1_1:-72448268 None:intergenic
GGAAAATGATTAATAGTAAA+GGG 0.415664 1_1:+72448140 None:intergenic
ATGGGATCTCTGTAGAAATC+TGG 0.417500 1_1:-72449883 None:intergenic
GCCATGGTGTTTATTTGAAA+GGG 0.419608 1_1:-72451117 None:intergenic
CATAAGACACTCACAGCTCT+TGG 0.419984 1_1:-72450075 None:intergenic
ACCACAATGTGTGAATCATC+AGG 0.421762 1_1:-72449424 None:intergenic
AGCTCCCTAATAATGATTGA+TGG 0.423360 1_1:-72449961 None:intergenic
TGGTTTATAGCCGTGGTGTT+TGG 0.426614 1_1:+72449443 Msa0041880:CDS
TTCTTAATATTTGCATCAGA+TGG 0.445890 1_1:+72450000 Msa0041880:CDS
AATCGAAGGGTTCGAAATTG+AGG 0.446755 1_1:-72448336 None:intergenic
AGGAAAATGATTAATAGTAA+AGG 0.455208 1_1:+72448139 None:intergenic
TAAGTGAAGATGAATATTGT+TGG 0.457861 1_1:+72450504 Msa0041880:three_prime_UTR
GGCCATGGTGTTTATTTGAA+AGG 0.468964 1_1:-72451118 None:intergenic
TTTCTCAATTGCCGTTGCTC+AGG 0.469493 1_1:+72448481 Msa0041880:CDS
GAATCTGAGACGAGCATGCT+TGG 0.471519 1_1:+72450411 Msa0041880:CDS
TTGCAGGTGTCTAGATCTAT+TGG 0.477815 1_1:+72449841 Msa0041880:intron
GATACTGACTGTGTAAATAA+GGG 0.479550 1_1:-72448622 None:intergenic
GAATGATATAGTACGAGGTA+AGG 0.486192 1_1:+72450751 Msa0041880:three_prime_UTR
AGCAGCTCTTACTAGTCTCT+TGG 0.490227 1_1:-72450184 None:intergenic
AGGGAACATATCTTTGATTG+AGG 0.491568 1_1:+72448200 Msa0041880:five_prime_UTR
TCTCAATAGCACGGCAAAAG+TGG 0.492113 1_1:-72451011 None:intergenic
TGTGTTGTATGTTGCCAACC+TGG 0.492259 1_1:+72449273 Msa0041880:CDS
AACAAAAGAGAAGAAGGAAA+GGG 0.493048 1_1:+72448181 Msa0041880:five_prime_UTR
TAAGCAGAGTGGTATATTGA+TGG 0.493960 1_1:+72450832 Msa0041880:three_prime_UTR
GACTTGAAACCTCACGCCTC+CGG 0.498145 1_1:+72448455 Msa0041880:CDS
TTTATAGCCGTGGTGTTTGG+AGG 0.501496 1_1:+72449446 Msa0041880:CDS
ACGAGCATGCTTGGTTCAGT+TGG 0.502121 1_1:+72450420 Msa0041880:CDS
GGGTGAATGCCGCGTTTAGA+GGG 0.502983 1_1:-72448235 None:intergenic
CCGTGGTGTTTGGAGGATCA+AGG 0.503122 1_1:+72449453 Msa0041880:CDS
GTCATTACTGGACGCTTCAA+AGG 0.503992 1_1:-72449931 None:intergenic
CACATTGTGGTTTATAGCCG+TGG 0.506241 1_1:+72449436 Msa0041880:CDS
GAGGATCAAGGGCATCATAC+AGG 0.507950 1_1:+72449465 Msa0041880:CDS
GTGCCTCTGACTTTCTCCTC+TGG 0.508030 1_1:+72448426 Msa0041880:CDS
CCCTGATGATTCACACATTG+TGG 0.513642 1_1:+72449423 Msa0041880:CDS
TAAGAAAACAAAAGAGAAGA+AGG 0.516063 1_1:+72448175 Msa0041880:five_prime_UTR
ACTCTAGAGTTGTTCTTGGT+AGG 0.521401 1_1:+72449299 Msa0041880:CDS
ACCTATGTCGGTGTTTATGA+TGG 0.523773 1_1:+72448554 Msa0041880:CDS
GTAGAATTTGCCTCTGAACA+AGG 0.528771 1_1:+72449109 Msa0041880:intron
TAGTCCTCAGATTGCGTCTG+TGG 0.530528 1_1:+72449216 Msa0041880:CDS
ATACAGAAAATGTGATAAAG+TGG 0.539215 1_1:+72450917 Msa0041880:three_prime_UTR
CATGCTCGTCTCAGATTCAT+CGG 0.540433 1_1:-72450406 None:intergenic
TCTCCTTCCGCCACCTATGT+CGG 0.544351 1_1:+72448542 Msa0041880:CDS
TCACCTGTGTTTCTTACCAC+AGG 0.546900 1_1:+72451170 Msa0041880:three_prime_UTR
GGAGGCTGTGCGCTTGTCAA+CGG 0.547101 1_1:+72449351 Msa0041880:CDS
TGATGATGGTGATTAGGTAT+CGG 0.548228 1_1:-72448295 None:intergenic
AAAACTGCTGGGTGGGCAGG+TGG 0.550770 1_1:+72450799 Msa0041880:three_prime_UTR
TAGAATTTGCCTCTGAACAA+GGG 0.551971 1_1:+72449110 Msa0041880:intron
GCTTTAGCCGAAACACAAGT+TGG 0.552383 1_1:-72451070 None:intergenic
CGTGGTGTTTGGAGGATCAA+GGG 0.557389 1_1:+72449454 Msa0041880:CDS
AGTCAGAGGCACCACGGCGA+CGG 0.560686 1_1:-72448415 None:intergenic
ATCAGGACCGCATAAGGCCA+TGG 0.560900 1_1:-72451133 None:intergenic
TCTGTATGTGAGAATGGATG+TGG 0.566163 1_1:-72450901 None:intergenic
GAGTTTAAGCAAACTGCTGT+TGG 0.576565 1_1:+72450345 Msa0041880:CDS
GACATAGGTGGCGGAAGGAG+AGG 0.580248 1_1:-72448540 None:intergenic
AATGATTAATAGTAAAGGGA+AGG 0.580559 1_1:+72448144 Msa0041880:five_prime_UTR
GAACAAGAATTCTTCTGTGG+AGG 0.580777 1_1:+72449333 Msa0041880:CDS
AACTCTAGAGTCACCCAGGT+TGG 0.586854 1_1:-72449287 None:intergenic
CCATGGTGTTTATTTGAAAG+GGG 0.589238 1_1:-72451116 None:intergenic
TTGTCTGCAACTTCATGTCG+TGG 0.591077 1_1:-72450865 None:intergenic
CATCACTTAATTGTTCCCAA+AGG 0.592457 1_1:-72450023 None:intergenic
GGAACATATCTTTGATTGAG+GGG 0.592711 1_1:+72448202 Msa0041880:five_prime_UTR
GGATCATAATGTAGCTGATG+AGG 0.594161 1_1:+72449372 Msa0041880:CDS
TGAGAACAAGAATTCTTCTG+TGG 0.594227 1_1:+72449330 Msa0041880:CDS
TATCTATGTATCGAAATCGA+AGG 0.594881 1_1:-72448350 None:intergenic
TGTGTAAATAAGGGAAAAGA+CGG 0.595113 1_1:-72448613 None:intergenic
GTGATCTATCTTGATCAGCA+TGG 0.596846 1_1:+72450306 Msa0041880:CDS
CATGGTGTTTATTTGAAAGG+GGG 0.598007 1_1:-72451115 None:intergenic
CAGAAAATGTGATAAAGTGG+TGG 0.598245 1_1:+72450920 Msa0041880:three_prime_UTR
AATGATATAGTACGAGGTAA+GGG 0.600378 1_1:+72450752 Msa0041880:three_prime_UTR
TAATAATTTATAGATGATGA+TGG 0.600551 1_1:-72448309 None:intergenic
GGGAGAATTGAAGCTAGGAA+AGG 0.601553 1_1:-72451095 None:intergenic
ACCATCATAAACACCGACAT+AGG 0.601759 1_1:-72448555 None:intergenic
GGGAACATATCTTTGATTGA+GGG 0.603886 1_1:+72448201 Msa0041880:five_prime_UTR
CGATAACAGTGATATCGTCA+TGG 0.607261 1_1:-72450284 None:intergenic
ATATAGTACGAGGTAAGGGT+TGG 0.608492 1_1:+72450756 Msa0041880:three_prime_UTR
GTCGGTGTTTATGATGGTCA+CGG 0.608831 1_1:+72448560 Msa0041880:CDS
GGAGAAAGTCAGAGGCACCA+CGG 0.613215 1_1:-72448421 None:intergenic
ATCTATGTATCGAAATCGAA+GGG 0.613366 1_1:-72448349 None:intergenic
GTTTCAAGTCTGTGTGCCAG+AGG 0.616689 1_1:-72448442 None:intergenic
ATCATAAACACCGACATAGG+TGG 0.616793 1_1:-72448552 None:intergenic
AACGGCAATTGAGAAATCAC+CGG 0.616907 1_1:-72448474 None:intergenic
CCACAATGTGTGAATCATCA+GGG 0.617006 1_1:-72449423 None:intergenic
TTACCACAGGCACAGTCTCG+AGG 0.620337 1_1:+72451183 Msa0041880:three_prime_UTR
AGTCCTCAGATTGCGTCTGT+GGG 0.621414 1_1:+72449217 Msa0041880:CDS
GGTGAATGCCGCGTTTAGAG+GGG 0.622833 1_1:-72448234 None:intergenic
CAACCTCGAGACTGTGCCTG+TGG 0.624722 1_1:-72451186 None:intergenic
ATCCAAACATCTCAATAGCA+CGG 0.624793 1_1:-72451020 None:intergenic
GAGAAATCACCGGAGGCGTG+AGG 0.628233 1_1:-72448464 None:intergenic
GTGCCAGAGGAGAAAGTCAG+AGG 0.628468 1_1:-72448429 None:intergenic
AGAATTTGCCTCTGAACAAG+GGG 0.635083 1_1:+72449111 Msa0041880:intron
GACATAAAGAAAATTGACAA+AGG 0.637095 1_1:+72450246 Msa0041880:CDS
ATGTAGCTGATGAGGAAGTG+AGG 0.643026 1_1:+72449380 Msa0041880:CDS
ATAAACACCGACATAGGTGG+CGG 0.644245 1_1:-72448549 None:intergenic
ACACCGACATAGGTGGCGGA+AGG 0.644257 1_1:-72448545 None:intergenic
CACAGGCACAGTCTCGAGGT+TGG 0.646521 1_1:+72451187 Msa0041880:three_prime_UTR
GTGTTGTATGTTGCCAACCT+GGG 0.647500 1_1:+72449274 Msa0041880:CDS
GTGCCTGTGGTAAGAAACAC+AGG 0.651716 1_1:-72451173 None:intergenic
AAATGAAATGGAAAAGTCAG+TGG 0.653608 1_1:-72448256 None:intergenic
AGAGTAATTAGCCTGAGCAA+CGG 0.654865 1_1:-72448492 None:intergenic
GTGAATGCCGCGTTTAGAGG+GGG 0.662612 1_1:-72448233 None:intergenic
ATAAACACCATGGCCTTATG+CGG 0.664649 1_1:+72451126 Msa0041880:three_prime_UTR
GATCCCACAGACGCAATCTG+AGG 0.664939 1_1:-72449220 None:intergenic
CAGCATGGAAGCTCTTCTAG+TGG 0.667037 1_1:+72450321 Msa0041880:CDS
GATGTTTATGATAAGCAGAG+TGG 0.667296 1_1:+72450821 Msa0041880:three_prime_UTR
ATTAGCTATAGATCCATACA+AGG 0.667906 1_1:-72450722 None:intergenic
TAGAGAAAATATATCAACAG+GGG 0.669880 1_1:-72450379 None:intergenic
GGACAACGAAAGTACGTGGA+CGG 0.674893 1_1:-72451049 None:intergenic
GAACAACTCTAGAGTCACCC+AGG 0.676212 1_1:-72449291 None:intergenic
AATGAAATGGAAAAGTCAGT+GGG 0.679469 1_1:-72448255 None:intergenic
AGTTGGACAACGAAAGTACG+TGG 0.680142 1_1:-72451053 None:intergenic
CCCCTTTCAAATAAACACCA+TGG 0.685691 1_1:+72451116 Msa0041880:three_prime_UTR
GGCAATTGAGAAATCACCGG+AGG 0.706892 1_1:-72448471 None:intergenic
GGCGTTTAGTAAGACCGAGG+AGG 0.718692 1_1:+72449159 Msa0041880:CDS
TTAGAGAAAATATATCAACA+GGG 0.731235 1_1:-72450380 None:intergenic
TTCGTGAATGATATAGTACG+AGG 0.735560 1_1:+72450746 Msa0041880:three_prime_UTR
CAATGTGTGAATCATCAGGG+TGG 0.738705 1_1:-72449420 None:intergenic
GAATTTGCCTCTGAACAAGG+GGG 0.739786 1_1:+72449112 Msa0041880:intron
AAAGGCGTTTAGTAAGACCG+AGG 0.745268 1_1:+72449156 Msa0041880:CDS
CCTTGATCCTCCAAACACCA+CGG 0.748053 1_1:-72449453 None:intergenic
GGTGTTTATGATGGTCACGG+TGG 0.807193 1_1:+72448563 Msa0041880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTTATAGATGATGA+TGG - chr1_1:72448312-72448331 None:intergenic 15.0%
!! TAAATAATAACTACAAGTAA+TGG - chr1_1:72448654-72448673 None:intergenic 15.0%
!! ACAAATATAATATATATCGT+TGG + chr1_1:72449489-72449508 Msa0041880:intron 15.0%
!!! GAATAATTTTATCCAAAATA+AGG - chr1_1:72450483-72450502 None:intergenic 15.0%
!! TGAAATGAAATGAAATGAAA+TGG - chr1_1:72448271-72448290 None:intergenic 20.0%
!! TATTAAGATCCAATTTGATT+TGG + chr1_1:72448773-72448792 Msa0041880:intron 20.0%
!! TCAAAAAATCCAAATCAAAT+TGG - chr1_1:72448785-72448804 None:intergenic 20.0%
!! CAAAAAAAAAAACATAGGTT+CGG - chr1_1:72449041-72449060 None:intergenic 20.0%
!! ATCAGCAAAAAAAAAAACAT+AGG - chr1_1:72449046-72449065 None:intergenic 20.0%
!! ACAAAAAATGTACATAATGA+AGG - chr1_1:72449678-72449697 None:intergenic 20.0%
!! TTAGAGAAAATATATCAACA+GGG - chr1_1:72450383-72450402 None:intergenic 20.0%
!! TTTAGAGAAAATATATCAAC+AGG - chr1_1:72450384-72450403 None:intergenic 20.0%
!!! AGTTGTGAAGTTTATATTTT+TGG + chr1_1:72450633-72450652 Msa0041880:three_prime_UTR 20.0%
!!! GTTGTGAAGTTTATATTTTT+GGG + chr1_1:72450634-72450653 Msa0041880:three_prime_UTR 20.0%
!! TGACGATAAAAAAAAAAATC+AGG - chr1_1:72451153-72451172 None:intergenic 20.0%
! AATGATTAATAGTAAAGGGA+AGG + chr1_1:72448144-72448163 Msa0041880:five_prime_UTR 25.0%
! TAAGAAAACAAAAGAGAAGA+AGG + chr1_1:72448175-72448194 Msa0041880:five_prime_UTR 25.0%
! ATTGACAGAAAATATAACGA+TGG - chr1_1:72448968-72448987 None:intergenic 25.0%
!! TCGTTATATTTTCTGTCAAT+TGG + chr1_1:72448968-72448987 Msa0041880:intron 25.0%
! TAATTGCAAATAAAAACCAC+CGG - chr1_1:72449603-72449622 None:intergenic 25.0%
!!! GTTTATTTTTGCCGATAAAT+GGG + chr1_1:72449782-72449801 Msa0041880:intron 25.0%
!!! TTTATTTTTGCCGATAAATG+GGG + chr1_1:72449783-72449802 Msa0041880:intron 25.0%
! TGAACCATCAATCATTATTA+GGG + chr1_1:72449957-72449976 Msa0041880:CDS 25.0%
! TTCTTAATATTTGCATCAGA+TGG + chr1_1:72450000-72450019 Msa0041880:CDS 25.0%
!! AGAGTTTCAATTTTCTTACA+TGG + chr1_1:72450123-72450142 Msa0041880:intron 25.0%
! GACATAAAGAAAATTGACAA+AGG + chr1_1:72450246-72450265 Msa0041880:CDS 25.0%
! TAGAGAAAATATATCAACAG+GGG - chr1_1:72450382-72450401 None:intergenic 25.0%
! TAAGTGAAGATGAATATTGT+TGG + chr1_1:72450504-72450523 Msa0041880:three_prime_UTR 25.0%
!! TTAATTGATTAGTCCTTGTA+TGG + chr1_1:72450709-72450728 Msa0041880:three_prime_UTR 25.0%
! ATACAGAAAATGTGATAAAG+TGG + chr1_1:72450917-72450936 Msa0041880:three_prime_UTR 25.0%
AAACAAAAGAGAAGAAGGAA+AGG + chr1_1:72448180-72448199 Msa0041880:five_prime_UTR 30.0%
AACAAAAGAGAAGAAGGAAA+GGG + chr1_1:72448181-72448200 Msa0041880:five_prime_UTR 30.0%
AATGAAATGGAAAAGTCAGT+GGG - chr1_1:72448258-72448277 None:intergenic 30.0%
AAATGAAATGGAAAAGTCAG+TGG - chr1_1:72448259-72448278 None:intergenic 30.0%
!! TATAGATGATGATGGTGATT+AGG - chr1_1:72448304-72448323 None:intergenic 30.0%
ATCTATGTATCGAAATCGAA+GGG - chr1_1:72448352-72448371 None:intergenic 30.0%
TATCTATGTATCGAAATCGA+AGG - chr1_1:72448353-72448372 None:intergenic 30.0%
TGTGTAAATAAGGGAAAAGA+CGG - chr1_1:72448616-72448635 None:intergenic 30.0%
! GATACTGACTGTGTAAATAA+GGG - chr1_1:72448625-72448644 None:intergenic 30.0%
! AGATACTGACTGTGTAAATA+AGG - chr1_1:72448626-72448645 None:intergenic 30.0%
!! ACATGTCAATGTGTTTTTGT+TGG + chr1_1:72448916-72448935 Msa0041880:intron 30.0%
!!! GGTTTATTTTTGCCGATAAA+TGG + chr1_1:72449781-72449800 Msa0041880:intron 30.0%
!!! CAGTTTTTTGTTTATGTTGC+AGG + chr1_1:72449825-72449844 Msa0041880:intron 30.0%
TTTCCAAATTGCCGAAAAAT+GGG - chr1_1:72449904-72449923 None:intergenic 30.0%
ATTTCCAAATTGCCGAAAAA+TGG - chr1_1:72449905-72449924 None:intergenic 30.0%
CTGAACCATCAATCATTATT+AGG + chr1_1:72449956-72449975 Msa0041880:CDS 30.0%
!! ATCATAAGCTGACCTTATTT+TGG + chr1_1:72450468-72450487 Msa0041880:three_prime_UTR 30.0%
TTGGTAAGTTAAGAGAATTC+TGG + chr1_1:72450523-72450542 Msa0041880:three_prime_UTR 30.0%
! AGTTGCTGACATATTTTTCT+TGG + chr1_1:72450591-72450610 Msa0041880:three_prime_UTR 30.0%
ATTAGCTATAGATCCATACA+AGG - chr1_1:72450725-72450744 None:intergenic 30.0%
AATGATATAGTACGAGGTAA+GGG + chr1_1:72450752-72450771 Msa0041880:three_prime_UTR 30.0%
! ACATTTTCTGTATGTGAGAA+TGG - chr1_1:72450910-72450929 None:intergenic 30.0%
AGGGAACATATCTTTGATTG+AGG + chr1_1:72448200-72448219 Msa0041880:five_prime_UTR 35.0%
GGGAACATATCTTTGATTGA+GGG + chr1_1:72448201-72448220 Msa0041880:five_prime_UTR 35.0%
GGAACATATCTTTGATTGAG+GGG + chr1_1:72448202-72448221 Msa0041880:five_prime_UTR 35.0%
!! TGATGATGGTGATTAGGTAT+CGG - chr1_1:72448298-72448317 None:intergenic 35.0%
TTGACAAATCTAGAAGCTTC+AGG - chr1_1:72448590-72448609 None:intergenic 35.0%
!! TTATTAGTTTGGTGCAGCAT+TGG + chr1_1:72448705-72448724 Msa0041880:intron 35.0%
ACACATTGACATGTCAACAT+CGG - chr1_1:72448910-72448929 None:intergenic 35.0%
TAGAATTTGCCTCTGAACAA+GGG + chr1_1:72449110-72449129 Msa0041880:intron 35.0%
GTCAGCAGATGTGATAAAAA+AGG + chr1_1:72449138-72449157 Msa0041880:CDS 35.0%
TGAGAACAAGAATTCTTCTG+TGG + chr1_1:72449330-72449349 Msa0041880:CDS 35.0%
! GATTGTGGTGTAATTTTGTC+CGG + chr1_1:72449581-72449600 Msa0041880:intron 35.0%
!! TCTACAGAGATCCCATTTTT+CGG + chr1_1:72449890-72449909 Msa0041880:CDS 35.0%
AGCTCCCTAATAATGATTGA+TGG - chr1_1:72449964-72449983 None:intergenic 35.0%
CATCACTTAATTGTTCCCAA+AGG - chr1_1:72450026-72450045 None:intergenic 35.0%
TTCGTGAATGATATAGTACG+AGG + chr1_1:72450746-72450765 Msa0041880:three_prime_UTR 35.0%
GAATGATATAGTACGAGGTA+AGG + chr1_1:72450751-72450770 Msa0041880:three_prime_UTR 35.0%
ACCAACTAACAAAAACTGCT+GGG + chr1_1:72450788-72450807 Msa0041880:three_prime_UTR 35.0%
GATGTTTATGATAAGCAGAG+TGG + chr1_1:72450821-72450840 Msa0041880:three_prime_UTR 35.0%
TAAGCAGAGTGGTATATTGA+TGG + chr1_1:72450832-72450851 Msa0041880:three_prime_UTR 35.0%
CAGAAAATGTGATAAAGTGG+TGG + chr1_1:72450920-72450939 Msa0041880:three_prime_UTR 35.0%
ATCCAAACATCTCAATAGCA+CGG - chr1_1:72451023-72451042 None:intergenic 35.0%
CATGGTGTTTATTTGAAAGG+GGG - chr1_1:72451118-72451137 None:intergenic 35.0%
CCATGGTGTTTATTTGAAAG+GGG - chr1_1:72451119-72451138 None:intergenic 35.0%
GCCATGGTGTTTATTTGAAA+GGG - chr1_1:72451120-72451139 None:intergenic 35.0%
AAAAAAATCAGGACCGCATA+AGG - chr1_1:72451142-72451161 None:intergenic 35.0%
AATCGAAGGGTTCGAAATTG+AGG - chr1_1:72448339-72448358 None:intergenic 40.0%
GACGGAAGCAAAAATCAAGA+GGG - chr1_1:72448400-72448419 None:intergenic 40.0%
AACGGCAATTGAGAAATCAC+CGG - chr1_1:72448477-72448496 None:intergenic 40.0%
! AGAGTAATTAGCCTGAGCAA+CGG - chr1_1:72448495-72448514 None:intergenic 40.0%
ATCATAAACACCGACATAGG+TGG - chr1_1:72448555-72448574 None:intergenic 40.0%
! ACCTATGTCGGTGTTTATGA+TGG + chr1_1:72448554-72448573 Msa0041880:CDS 40.0%
ACCATCATAAACACCGACAT+AGG - chr1_1:72448558-72448577 None:intergenic 40.0%
GTAGAATTTGCCTCTGAACA+AGG + chr1_1:72449109-72449128 Msa0041880:intron 40.0%
AGAATTTGCCTCTGAACAAG+GGG + chr1_1:72449111-72449130 Msa0041880:intron 40.0%
CAAATGCAAAAAGTCCTCCT+CGG - chr1_1:72449176-72449195 None:intergenic 40.0%
!! ACTCTAGAGTTGTTCTTGGT+AGG + chr1_1:72449299-72449318 Msa0041880:CDS 40.0%
GAACAAGAATTCTTCTGTGG+AGG + chr1_1:72449333-72449352 Msa0041880:CDS 40.0%
GGATCATAATGTAGCTGATG+AGG + chr1_1:72449372-72449391 Msa0041880:CDS 40.0%
CCACAATGTGTGAATCATCA+GGG - chr1_1:72449426-72449445 None:intergenic 40.0%
ACCACAATGTGTGAATCATC+AGG - chr1_1:72449427-72449446 None:intergenic 40.0%
TACCAACATGTCTGTGATTG+TGG + chr1_1:72449566-72449585 Msa0041880:intron 40.0%
! TTTTGCCGATAAATGGGGTA+AGG + chr1_1:72449788-72449807 Msa0041880:intron 40.0%
TTTGCCGATAAATGGGGTAA+GGG + chr1_1:72449789-72449808 Msa0041880:intron 40.0%
TTGCAGGTGTCTAGATCTAT+TGG + chr1_1:72449841-72449860 Msa0041880:intron 40.0%
ATGGGATCTCTGTAGAAATC+TGG - chr1_1:72449886-72449905 None:intergenic 40.0%
!! GATCCCATTTTTCGGCAATT+TGG + chr1_1:72449898-72449917 Msa0041880:CDS 40.0%
TATTTGCATCAGATGGCCTT+TGG + chr1_1:72450007-72450026 Msa0041880:CDS 40.0%
ATTTGCATCAGATGGCCTTT+GGG + chr1_1:72450008-72450027 Msa0041880:CDS 40.0%
!!! TTTGTTTTTGTTCCACGTGC+AGG + chr1_1:72450155-72450174 Msa0041880:intron 40.0%
!!! TTGTTTTTGTTCCACGTGCA+GGG + chr1_1:72450156-72450175 Msa0041880:intron 40.0%
CGATAACAGTGATATCGTCA+TGG - chr1_1:72450287-72450306 None:intergenic 40.0%
GTGATCTATCTTGATCAGCA+TGG + chr1_1:72450306-72450325 Msa0041880:CDS 40.0%
GAGTTTAAGCAAACTGCTGT+TGG + chr1_1:72450345-72450364 Msa0041880:CDS 40.0%
ATATAGTACGAGGTAAGGGT+TGG + chr1_1:72450756-72450775 Msa0041880:three_prime_UTR 40.0%
CACCAACTAACAAAAACTGC+TGG + chr1_1:72450787-72450806 Msa0041880:three_prime_UTR 40.0%
! ACCCAGCAGTTTTTGTTAGT+TGG - chr1_1:72450792-72450811 None:intergenic 40.0%
AACTAACAAAAACTGCTGGG+TGG + chr1_1:72450791-72450810 Msa0041880:three_prime_UTR 40.0%
ACTAACAAAAACTGCTGGGT+GGG + chr1_1:72450792-72450811 Msa0041880:three_prime_UTR 40.0%
TCTGTATGTGAGAATGGATG+TGG - chr1_1:72450904-72450923 None:intergenic 40.0%
TCGTTGTCCAACTTGTGTTT+CGG + chr1_1:72451063-72451082 Msa0041880:three_prime_UTR 40.0%
CCCCTTTCAAATAAACACCA+TGG + chr1_1:72451116-72451135 Msa0041880:three_prime_UTR 40.0%
GGCCATGGTGTTTATTTGAA+AGG - chr1_1:72451121-72451140 None:intergenic 40.0%
!! ATAAACACCATGGCCTTATG+CGG + chr1_1:72451126-72451145 Msa0041880:three_prime_UTR 40.0%
CGACGGAAGCAAAAATCAAG+AGG - chr1_1:72448401-72448420 None:intergenic 45.0%
TTTCTCAATTGCCGTTGCTC+AGG + chr1_1:72448481-72448500 Msa0041880:CDS 45.0%
ATAAACACCGACATAGGTGG+CGG - chr1_1:72448552-72448571 None:intergenic 45.0%
! GTCGGTGTTTATGATGGTCA+CGG + chr1_1:72448560-72448579 Msa0041880:CDS 45.0%
ACACCAACACCTCTTATCGA+AGG + chr1_1:72448847-72448866 Msa0041880:intron 45.0%
GAATTTGCCTCTGAACAAGG+GGG + chr1_1:72449112-72449131 Msa0041880:intron 45.0%
!! AAAGGCGTTTAGTAAGACCG+AGG + chr1_1:72449156-72449175 Msa0041880:CDS 45.0%
! CGAGGAGGACTTTTTGCATT+TGG + chr1_1:72449174-72449193 Msa0041880:CDS 45.0%
GACGCAATCTGAGGACTAAT+TGG - chr1_1:72449214-72449233 None:intergenic 45.0%
GTGGGATCATGTTGTCTTCT+TGG + chr1_1:72449235-72449254 Msa0041880:CDS 45.0%
TGTGTTGTATGTTGCCAACC+TGG + chr1_1:72449273-72449292 Msa0041880:CDS 45.0%
GTGTTGTATGTTGCCAACCT+GGG + chr1_1:72449274-72449293 Msa0041880:CDS 45.0%
!! GGTGACTCTAGAGTTGTTCT+TGG + chr1_1:72449295-72449314 Msa0041880:CDS 45.0%
ATGTAGCTGATGAGGAAGTG+AGG + chr1_1:72449380-72449399 Msa0041880:CDS 45.0%
CAATGTGTGAATCATCAGGG+TGG - chr1_1:72449423-72449442 None:intergenic 45.0%
CCCTGATGATTCACACATTG+TGG + chr1_1:72449423-72449442 Msa0041880:CDS 45.0%
CACATTGTGGTTTATAGCCG+TGG + chr1_1:72449436-72449455 Msa0041880:CDS 45.0%
TGGTTTATAGCCGTGGTGTT+TGG + chr1_1:72449443-72449462 Msa0041880:CDS 45.0%
TTTATAGCCGTGGTGTTTGG+AGG + chr1_1:72449446-72449465 Msa0041880:CDS 45.0%
CACCACAATCACAGACATGT+TGG - chr1_1:72449571-72449590 None:intergenic 45.0%
! TGTGGTGTAATTTTGTCCGG+TGG + chr1_1:72449584-72449603 Msa0041880:intron 45.0%
GAGGCAAGCTTATACAATGC+TGG - chr1_1:72449723-72449742 None:intergenic 45.0%
TTGCCTCGCTTATCAGTTAG+AGG + chr1_1:72449736-72449755 Msa0041880:intron 45.0%
!! TATCAGTTAGAGGTGCTGCA+AGG + chr1_1:72449746-72449765 Msa0041880:intron 45.0%
!! ATCAGTTAGAGGTGCTGCAA+GGG + chr1_1:72449747-72449766 Msa0041880:intron 45.0%
GCTACCCTTACCCCATTTAT+CGG - chr1_1:72449796-72449815 None:intergenic 45.0%
ACTGGACGCTTCAAAGGAAT+AGG - chr1_1:72449928-72449947 None:intergenic 45.0%
GTCATTACTGGACGCTTCAA+AGG - chr1_1:72449934-72449953 None:intergenic 45.0%
GATGGTTCAGCTGTCATTAC+TGG - chr1_1:72449946-72449965 None:intergenic 45.0%
CATAAGACACTCACAGCTCT+TGG - chr1_1:72450078-72450097 None:intergenic 45.0%
! AGCAGCTCTTACTAGTCTCT+TGG - chr1_1:72450187-72450206 None:intergenic 45.0%
ACTAGTAAGAGCTGCTCTTC+AGG + chr1_1:72450191-72450210 Msa0041880:CDS 45.0%
CATGCTCGTCTCAGATTCAT+CGG - chr1_1:72450409-72450428 None:intergenic 45.0%
TTGTCTGCAACTTCATGTCG+TGG - chr1_1:72450868-72450887 None:intergenic 45.0%
TCTCAATAGCACGGCAAAAG+TGG - chr1_1:72451014-72451033 None:intergenic 45.0%
! TGCCGTGCTATTGAGATGTT+TGG + chr1_1:72451018-72451037 Msa0041880:three_prime_UTR 45.0%
! AGTTGGACAACGAAAGTACG+TGG - chr1_1:72451056-72451075 None:intergenic 45.0%
GCTTTAGCCGAAACACAAGT+TGG - chr1_1:72451073-72451092 None:intergenic 45.0%
GGGAGAATTGAAGCTAGGAA+AGG - chr1_1:72451098-72451117 None:intergenic 45.0%
AAAGGGGGAGAATTGAAGCT+AGG - chr1_1:72451103-72451122 None:intergenic 45.0%
TCACCTGTGTTTCTTACCAC+AGG + chr1_1:72451170-72451189 Msa0041880:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTATTAGTT+TGG + chr1_1:72448694-72448713 Msa0041880:intron 5.0%
! GTTTCAAGTCTGTGTGCCAG+AGG - chr1_1:72448445-72448464 None:intergenic 50.0%
GGCAATTGAGAAATCACCGG+AGG - chr1_1:72448474-72448493 None:intergenic 50.0%
GGTGTTTATGATGGTCACGG+TGG + chr1_1:72448563-72448582 Msa0041880:CDS 50.0%
! ACGCCTTCGATAAGAGGTGT+TGG - chr1_1:72448853-72448872 None:intergenic 50.0%
TGACAATCCCCCTTGTTCAG+AGG - chr1_1:72449122-72449141 None:intergenic 50.0%
TAGTCCTCAGATTGCGTCTG+TGG + chr1_1:72449216-72449235 Msa0041880:CDS 50.0%
AGTCCTCAGATTGCGTCTGT+GGG + chr1_1:72449217-72449236 Msa0041880:CDS 50.0%
!! AACTCTAGAGTCACCCAGGT+TGG - chr1_1:72449290-72449309 None:intergenic 50.0%
!! GAACAACTCTAGAGTCACCC+AGG - chr1_1:72449294-72449313 None:intergenic 50.0%
CCTTGATCCTCCAAACACCA+CGG - chr1_1:72449456-72449475 None:intergenic 50.0%
CGTGGTGTTTGGAGGATCAA+GGG + chr1_1:72449454-72449473 Msa0041880:CDS 50.0%
!! GAGGATCAAGGGCATCATAC+AGG + chr1_1:72449465-72449484 Msa0041880:CDS 50.0%
GCACCTCTAACTGATAAGCG+AGG - chr1_1:72449742-72449761 None:intergenic 50.0%
!! TCAGTTAGAGGTGCTGCAAG+GGG + chr1_1:72449748-72449767 Msa0041880:intron 50.0%
CAGCATGGAAGCTCTTCTAG+TGG + chr1_1:72450321-72450340 Msa0041880:CDS 50.0%
! GAATCTGAGACGAGCATGCT+TGG + chr1_1:72450411-72450430 Msa0041880:CDS 50.0%
ACGAGCATGCTTGGTTCAGT+TGG + chr1_1:72450420-72450439 Msa0041880:CDS 50.0%
! GGACAACGAAAGTACGTGGA+CGG - chr1_1:72451052-72451071 None:intergenic 50.0%
GTGCCTGTGGTAAGAAACAC+AGG - chr1_1:72451176-72451195 None:intergenic 50.0%
GTGAATGCCGCGTTTAGAGG+GGG - chr1_1:72448236-72448255 None:intergenic 55.0%
GGTGAATGCCGCGTTTAGAG+GGG - chr1_1:72448237-72448256 None:intergenic 55.0%
GGGTGAATGCCGCGTTTAGA+GGG - chr1_1:72448238-72448257 None:intergenic 55.0%
TGGGTGAATGCCGCGTTTAG+AGG - chr1_1:72448239-72448258 None:intergenic 55.0%
! GATTTTTGCTTCCGTCGCCG+TGG + chr1_1:72448404-72448423 Msa0041880:CDS 55.0%
!! GGAGAAAGTCAGAGGCACCA+CGG - chr1_1:72448424-72448443 None:intergenic 55.0%
GTGCCTCTGACTTTCTCCTC+TGG + chr1_1:72448426-72448445 Msa0041880:CDS 55.0%
GTGCCAGAGGAGAAAGTCAG+AGG - chr1_1:72448432-72448451 None:intergenic 55.0%
GACTTGAAACCTCACGCCTC+CGG + chr1_1:72448455-72448474 Msa0041880:CDS 55.0%
TCTCCTTCCGCCACCTATGT+CGG + chr1_1:72448542-72448561 Msa0041880:CDS 55.0%
CCAGACACGCCTTCGATAAG+AGG - chr1_1:72448859-72448878 None:intergenic 55.0%
! CCTCTTATCGAAGGCGTGTC+TGG + chr1_1:72448856-72448875 Msa0041880:intron 55.0%
! TCGAAGGCGTGTCTGGTGTT+TGG + chr1_1:72448863-72448882 Msa0041880:intron 55.0%
GGCGTTTAGTAAGACCGAGG+AGG + chr1_1:72449159-72449178 Msa0041880:CDS 55.0%
GATCCCACAGACGCAATCTG+AGG - chr1_1:72449223-72449242 None:intergenic 55.0%
CCGTGGTGTTTGGAGGATCA+AGG + chr1_1:72449453-72449472 Msa0041880:CDS 55.0%
!! CAGTTAGAGGTGCTGCAAGG+GGG + chr1_1:72449749-72449768 Msa0041880:intron 55.0%
TCTTGGCAATTCCCTGCACG+TGG - chr1_1:72450170-72450189 None:intergenic 55.0%
ACAAAAACTGCTGGGTGGGC+AGG + chr1_1:72450796-72450815 Msa0041880:three_prime_UTR 55.0%
ATCAGGACCGCATAAGGCCA+TGG - chr1_1:72451136-72451155 None:intergenic 55.0%
TTACCACAGGCACAGTCTCG+AGG + chr1_1:72451183-72451202 Msa0041880:three_prime_UTR 55.0%
CCGCGTTTAGAGGGGGAAGA+CGG - chr1_1:72448229-72448248 None:intergenic 60.0%
CCGTCTTCCCCCTCTAAACG+CGG + chr1_1:72448226-72448245 Msa0041880:five_prime_UTR 60.0%
! GAGAAATCACCGGAGGCGTG+AGG - chr1_1:72448467-72448486 None:intergenic 60.0%
!! GACATAGGTGGCGGAAGGAG+AGG - chr1_1:72448543-72448562 None:intergenic 60.0%
!! ACACCGACATAGGTGGCGGA+AGG - chr1_1:72448548-72448567 None:intergenic 60.0%
GGAGGCTGTGCGCTTGTCAA+CGG + chr1_1:72449351-72449370 Msa0041880:CDS 60.0%
!! GAGGTGCTGCAAGGGGGAAA+TGG + chr1_1:72449755-72449774 Msa0041880:intron 60.0%
GCTGCAAGGGGGAAATGGTC+TGG + chr1_1:72449760-72449779 Msa0041880:intron 60.0%
AAAACTGCTGGGTGGGCAGG+TGG + chr1_1:72450799-72450818 Msa0041880:three_prime_UTR 60.0%
CAACCTCGAGACTGTGCCTG+TGG - chr1_1:72451189-72451208 None:intergenic 60.0%
CACAGGCACAGTCTCGAGGT+TGG + chr1_1:72451187-72451206 Msa0041880:three_prime_UTR 60.0%
!! AGTCAGAGGCACCACGGCGA+CGG - chr1_1:72448418-72448437 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72448141 72451232 72448141 ID=Msa0041880;Name=Msa0041880
chr1_1 mRNA 72448141 72451232 72448141 ID=Msa0041880-mRNA-1;Parent=Msa0041880;Name=Msa0041880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=236|1|1|1|1|1|4|786|379
chr1_1 exon 72448141 72448635 72448141 ID=Msa0041880-mRNA-1:exon:24077;Parent=Msa0041880-mRNA-1
chr1_1 exon 72449113 72449486 72449113 ID=Msa0041880-mRNA-1:exon:24078;Parent=Msa0041880-mRNA-1
chr1_1 exon 72449847 72450083 72449847 ID=Msa0041880-mRNA-1:exon:24079;Parent=Msa0041880-mRNA-1
chr1_1 exon 72450177 72451232 72450177 ID=Msa0041880-mRNA-1:exon:24080;Parent=Msa0041880-mRNA-1
chr1_1 five_prime_UTR 72448141 72448376 72448141 ID=Msa0041880-mRNA-1:five_prime_utr;Parent=Msa0041880-mRNA-1
chr1_1 CDS 72448377 72448635 72448377 ID=Msa0041880-mRNA-1:cds;Parent=Msa0041880-mRNA-1
chr1_1 CDS 72449113 72449486 72449113 ID=Msa0041880-mRNA-1:cds;Parent=Msa0041880-mRNA-1
chr1_1 CDS 72449847 72450083 72449847 ID=Msa0041880-mRNA-1:cds;Parent=Msa0041880-mRNA-1
chr1_1 CDS 72450177 72450446 72450177 ID=Msa0041880-mRNA-1:cds;Parent=Msa0041880-mRNA-1
chr1_1 three_prime_UTR 72450447 72451232 72450447 ID=Msa0041880-mRNA-1:three_prime_utr;Parent=Msa0041880-mRNA-1
Gene Sequence

>Msa0041880

ATGCTGCGTTTGTGCTTAAGCCCTCTTGATTTTTGCTTCCGTCGCCGTGGTGCCTCTGACTTTCTCCTCTGGCACACAGACTTGAAACCTCACGCCTCCGGTGATTTCTCAATTGCCGTTGCTCAGGCTAATTACTCTCTTGAAGATCAAAGTCAAGTCTTCACCTCTCCTTCCGCCACCTATGTCGGTGTTTATGATGGTCACGGTGGTCCTGAAGCTTCTAGATTTGTCAACAACCGTCTTTTCCCTTATTTACACAAATTTGCCTCTGAACAAGGGGGATTGTCAGCAGATGTGATAAAAAAGGCGTTTAGTAAGACCGAGGAGGACTTTTTGCATTTGGTTAAGTTGTCGTTGCCAATTAGTCCTCAGATTGCGTCTGTGGGATCATGTTGTCTTCTTGGTGCAATTTCTAACAATGTGTTGTATGTTGCCAACCTGGGTGACTCTAGAGTTGTTCTTGGTAGGAAGTATCTTGAGAACAAGAATTCTTCTGTGGAGGCTGTGCGCTTGTCAACGGATCATAATGTAGCTGATGAGGAAGTGAGGAGAGAAGTTGAAGCTCTCCACCCTGATGATTCACACATTGTGGTTTATAGCCGTGGTGTTTGGAGGATCAAGGGCATCATACAGGTGTCTAGATCTATTGGTGATGTATATTTGAAGAGACCAGATTTCTACAGAGATCCCATTTTTCGGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCAGTAATGACAGCTGAACCATCAATCATTATTAGGGAGCTTGAGTCAGATGATTTATTCTTAATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTGATATTGTTTTCAAATATCCAAGAGCTGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATTGACAAAGGAATTAGAAGACACTTCCATGACGATATCACTGTTATCGTGATCTATCTTGATCAGCATGGAAGCTCTTCTAGTGGTGAGTTTAAGCAAACTGCTGTTGGCTATACAACTGCCCCTGTTGATATATTTTCTCTAAATGCCGATGAATCTGAGACGAGCATGCTTGGTTCAGTTGGCTAA
Protein sequence

>Msa0041880

MLRLCLSPLDFCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSADVIKKAFSKTEEDFLHLVKLSLPISPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRKYLENKNSSVEAVRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFGNPIPLKRPVMTAEPSIIIRELESDDLFLIFASDGLWEQLSDEAAVDIVFKYPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLDQHGSSSSGEFKQTAVGYTTAPVDIFSLNADESETSMLGSVG*