Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441040 | sp|Q9LDD1|BRG3_ARATH | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 7.49e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441040 | G7I3I5 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0082420 | Msa1441040 | 0.802301 | 5.988057e-49 | -8.615850e-47 |
| Msa0096870 | Msa1441040 | 0.864309 | 1.334468e-64 | -8.615850e-47 |
| Msa1370810 | Msa1441040 | 0.814591 | 1.424961e-51 | -8.615850e-47 |
| Msa1411250 | Msa1441040 | 0.822492 | 2.301174e-53 | -8.615850e-47 |
| Msa0964330 | Msa1441040 | 0.814388 | 1.580716e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441040 | MtrunA17_Chr1g0153261 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 701 |
| Msa1441040 | MtrunA17_Chr5g0400041 | 32.627 | 236 | 142 | 4 | 118 | 340 | 103 | 334 | 1.09e-33 | 127 |
| Msa1441040 | MtrunA17_Chr2g0311981 | 27.941 | 340 | 196 | 10 | 38 | 340 | 38 | 365 | 4.08e-33 | 125 |
| Msa1441040 | MtrunA17_Chr4g0055201 | 30.980 | 255 | 149 | 5 | 106 | 340 | 84 | 331 | 1.84e-25 | 104 |
| Msa1441040 | MtrunA17_Chr8g0358261 | 26.606 | 218 | 139 | 3 | 142 | 338 | 90 | 307 | 5.69e-22 | 94.4 |
| Msa1441040 | MtrunA17_Chr2g0291661 | 29.851 | 201 | 112 | 3 | 145 | 330 | 122 | 308 | 6.05e-22 | 94.7 |
| Msa1441040 | MtrunA17_Chr4g0043501 | 30.052 | 193 | 124 | 4 | 141 | 330 | 98 | 282 | 9.16e-20 | 88.2 |
| Msa1441040 | MtrunA17_Chr3g0145641 | 32.386 | 176 | 95 | 4 | 153 | 328 | 19 | 170 | 8.09e-19 | 82.8 |
| Msa1441040 | MtrunA17_Chr4g0018631 | 29.050 | 179 | 114 | 4 | 150 | 328 | 34 | 199 | 1.19e-17 | 80.5 |
| Msa1441040 | MtrunA17_Chr2g0319361 | 26.842 | 190 | 114 | 6 | 151 | 332 | 72 | 244 | 4.37e-13 | 68.2 |
| Msa1441040 | MtrunA17_Chr4g0017931 | 24.257 | 202 | 134 | 4 | 137 | 338 | 66 | 248 | 4.34e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441040 | AT1G45976.1 | 65.635 | 323 | 100 | 3 | 22 | 340 | 10 | 325 | 3.40e-155 | 438 |
| Msa1441040 | AT1G60610.2 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa1441040 | AT1G60610.4 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa1441040 | AT1G60610.1 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa1441040 | AT1G60610.5 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa1441040 | AT1G60610.3 | 37.449 | 243 | 124 | 4 | 118 | 340 | 105 | 339 | 4.27e-45 | 157 |
| Msa1441040 | AT1G10650.2 | 35.565 | 239 | 134 | 3 | 118 | 340 | 48 | 282 | 3.51e-40 | 143 |
| Msa1441040 | AT1G10650.1 | 34.701 | 268 | 153 | 4 | 91 | 340 | 75 | 338 | 4.86e-40 | 144 |
| Msa1441040 | AT3G12920.1 | 29.839 | 248 | 159 | 4 | 108 | 340 | 86 | 333 | 7.62e-29 | 114 |
| Msa1441040 | AT5G47050.1 | 32.618 | 233 | 139 | 5 | 115 | 339 | 76 | 298 | 1.23e-27 | 110 |
| Msa1441040 | AT1G32740.3 | 35.398 | 226 | 112 | 8 | 118 | 328 | 49 | 255 | 3.82e-27 | 108 |
| Msa1441040 | AT1G32740.2 | 35.398 | 226 | 112 | 8 | 118 | 328 | 49 | 255 | 3.82e-27 | 108 |
| Msa1441040 | AT1G32740.1 | 35.398 | 226 | 112 | 8 | 118 | 328 | 93 | 299 | 4.31e-27 | 108 |
| Msa1441040 | AT1G32740.4 | 35.398 | 226 | 112 | 8 | 118 | 328 | 82 | 288 | 5.81e-27 | 108 |
| Msa1441040 | AT4G17680.2 | 31.405 | 242 | 143 | 5 | 107 | 338 | 12 | 240 | 3.59e-26 | 104 |
| Msa1441040 | AT4G17680.1 | 31.405 | 242 | 143 | 5 | 107 | 338 | 84 | 312 | 6.57e-26 | 105 |
| Msa1441040 | AT1G79110.2 | 32.365 | 241 | 139 | 4 | 124 | 340 | 113 | 353 | 8.33e-26 | 106 |
| Msa1441040 | AT1G79110.3 | 32.365 | 241 | 139 | 4 | 124 | 340 | 91 | 331 | 1.08e-25 | 105 |
| Msa1441040 | AT4G35070.1 | 35.294 | 187 | 110 | 5 | 150 | 332 | 77 | 256 | 2.93e-25 | 102 |
| Msa1441040 | AT4G35070.2 | 35.294 | 187 | 110 | 5 | 150 | 332 | 22 | 201 | 5.06e-25 | 100 |
| Msa1441040 | AT1G79110.1 | 32.377 | 244 | 138 | 5 | 124 | 340 | 113 | 356 | 2.59e-24 | 102 |
| Msa1441040 | AT5G45100.2 | 29.954 | 217 | 115 | 5 | 141 | 340 | 69 | 265 | 4.13e-20 | 89.0 |
| Msa1441040 | AT5G45100.1 | 29.954 | 217 | 115 | 5 | 141 | 340 | 96 | 292 | 5.49e-20 | 89.0 |
| Msa1441040 | AT4G17680.3 | 31.892 | 185 | 109 | 3 | 162 | 338 | 13 | 188 | 7.49e-20 | 86.3 |
| Msa1441040 | AT4G19700.1 | 27.305 | 282 | 164 | 8 | 57 | 328 | 40 | 290 | 1.13e-16 | 79.7 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCAAAAGCTTATGCTTT+TGG | 0.226187 | tig0029200:+9032 | Msa1441040:intergenic |
| TGTCCAAAAGCATAAGCTTT+TGG | 0.257102 | tig0029200:-9035 | Msa1441040:three_prime_UTR |
| TTTCATCAAGTCTTTCATAT+TGG | 0.300589 | tig0029200:+9432 | Msa1441040:intergenic |
| GTTGATTTGCATTGGAATTT+CGG | 0.328434 | tig0029200:-10710 | Msa1441040:CDS |
| CGATCTGTGTCCACGGGGTT+AGG | 0.331116 | tig0029200:-10602 | Msa1441040:CDS |
| GCTGAGGTTGTGGTTGTTGC+TGG | 0.334759 | tig0029200:+11562 | Msa1441040:intergenic |
| AAACATCAACAAGAGGAATA+TGG | 0.343288 | tig0029200:-9677 | Msa1441040:CDS |
| CTCCATGCCGATGAATTTAG+AGG | 0.351654 | tig0029200:+9300 | Msa1441040:intergenic |
| AGCCACAAACCAAATCTTTC+AGG | 0.361664 | tig0029200:-11542 | Msa1441040:intron |
| TAGTAATTACCTGAAAGATT+TGG | 0.385861 | tig0029200:+11533 | Msa1441040:intergenic |
| TCGGCTTTATTGTCTCTCAT+AGG | 0.391703 | tig0029200:-10539 | Msa1441040:CDS |
| TGCTCCGGGTCCTGTCATTC+CGG | 0.393035 | tig0029200:-10753 | Msa1441040:CDS |
| CATGGAGGTCTACATGTAAC+TGG | 0.398646 | tig0029200:-9284 | Msa1441040:exon |
| GCTGGTAGTGGCGTTGAAAC+TGG | 0.406582 | tig0029200:+11580 | Msa1441040:intergenic |
| AAAGATTTGGTTTGTGGCTG+AGG | 0.411771 | tig0029200:+11546 | Msa1441040:intergenic |
| AGAAATTTACAAACAATTGA+AGG | 0.413418 | tig0029200:-11353 | Msa1441040:CDS |
| CGGCTTTATTGTCTCTCATA+GGG | 0.421365 | tig0029200:-10538 | Msa1441040:CDS |
| AACACTCGCCTGGCTTCAAC+AGG | 0.433505 | tig0029200:-10566 | Msa1441040:CDS |
| TTCTTCTTCCTCCTCCTCCA+TGG | 0.436021 | tig0029200:-11616 | Msa1441040:exon |
| TATGGAACTTGAAGATCAAA+TGG | 0.436027 | tig0029200:-9659 | Msa1441040:CDS |
| GAGGAAAAGACTAAAAGAAC+AGG | 0.439039 | tig0029200:-10675 | Msa1441040:CDS |
| TTGGTTTGTGGCTGAGGTTG+TGG | 0.448635 | tig0029200:+11552 | Msa1441040:intergenic |
| TTTGCATTGGAATTTCGGTT+TGG | 0.453573 | tig0029200:-10705 | Msa1441040:CDS |
| CTTCTTTACTGTCCCTACCT+TGG | 0.456069 | tig0029200:+9539 | Msa1441040:intergenic |
| TGCATACATGGAGGAATGTA+AGG | 0.466674 | tig0029200:+11266 | Msa1441040:intergenic |
| GAAAGACTTGATGAAATGTA+AGG | 0.468795 | tig0029200:-9425 | Msa1441040:CDS |
| GGTCCTGTCATTCCGGCTGA+TGG | 0.469575 | tig0029200:-10746 | Msa1441040:CDS |
| CAACCTCGATCTGTGTCCAC+GGG | 0.471862 | tig0029200:-10608 | Msa1441040:CDS |
| GATACAGCTTCTTGCTGTAA+TGG | 0.478491 | tig0029200:-9493 | Msa1441040:CDS |
| TACCTGAAAGATTTGGTTTG+TGG | 0.484678 | tig0029200:+11540 | Msa1441040:intergenic |
| GTTGTGGTTGTTGCTGGTAG+TGG | 0.484704 | tig0029200:+11568 | Msa1441040:intergenic |
| CTTCCATCAGCCGGAATGAC+AGG | 0.496376 | tig0029200:+10743 | Msa1441040:intergenic |
| CAAGGTAGGGACAGTAAAGA+AGG | 0.497061 | tig0029200:-9538 | Msa1441040:CDS |
| AAGAAAAGCCATGGAGGAGG+AGG | 0.503001 | tig0029200:+11608 | Msa1441040:intergenic |
| TGATCGTGAGTTACAGCAGC+AGG | 0.505797 | tig0029200:-10507 | Msa1441040:CDS |
| GCAACCTCGATCTGTGTCCA+CGG | 0.508164 | tig0029200:-10609 | Msa1441040:CDS |
| AATTTAGAGGATTGACATAG+AGG | 0.508849 | tig0029200:+9313 | Msa1441040:intergenic |
| TCTCAAGTTTAACCTCCAAC+AGG | 0.509968 | tig0029200:-9569 | Msa1441040:CDS |
| ATGGTGGTGTTGATTTGCAT+TGG | 0.512381 | tig0029200:-10718 | Msa1441040:CDS |
| CCGAGTCTCCTGTTGAAGCC+AGG | 0.516637 | tig0029200:+10558 | Msa1441040:intergenic |
| AAAACTTCGCGAGAAAGAAA+CGG | 0.522431 | tig0029200:-9707 | Msa1441040:CDS |
| GTCGCTCGATAACACTCGCC+TGG | 0.522524 | tig0029200:-10576 | Msa1441040:CDS |
| GGACAGATTTCTCAAACTGC+AGG | 0.527660 | tig0029200:-10474 | Msa1441040:intron |
| TACCTTGGAGATATGCCTGT+TGG | 0.532431 | tig0029200:+9554 | Msa1441040:intergenic |
| ATCCTCTAAATTCATCGGCA+TGG | 0.537187 | tig0029200:-9302 | Msa1441040:CDS |
| AGGTCAGATGTCGCAGCAGA+TGG | 0.539736 | tig0029200:-11333 | Msa1441040:CDS |
| CTTGGAGATATGCCTGTTGG+AGG | 0.541227 | tig0029200:+9557 | None:intergenic |
| CAGAGGCAAAGATGCTTGCA+AGG | 0.548296 | tig0029200:+9367 | None:intergenic |
| AAAGGAAAGAGGGGTAAGTG+TGG | 0.548972 | tig0029200:-11731 | None:intergenic |
| CGAGGGAATGTGAATGTGAA+TGG | 0.549634 | tig0029200:+11672 | Msa1441040:intergenic |
| TGTCAATCCTCTAAATTCAT+CGG | 0.564430 | tig0029200:-9307 | Msa1441040:CDS |
| GACTGATCTTGCAAATCAGT+AGG | 0.565941 | tig0029200:+11299 | Msa1441040:intergenic |
| AGGGACAGTAAAGAAGGGTG+TGG | 0.567717 | tig0029200:-9532 | Msa1441040:CDS |
| CCTGGCTTCAACAGGAGACT+CGG | 0.567720 | tig0029200:-10558 | Msa1441040:CDS |
| CCACCATCACTTCCATCAGC+CGG | 0.574524 | tig0029200:+10734 | Msa1441040:intergenic |
| AACAGGCATATCTCCAAGGT+AGG | 0.579800 | tig0029200:-9552 | Msa1441040:CDS |
| TAATTCTCAGATATCTTCTG+TGG | 0.580087 | tig0029200:-10639 | Msa1441040:CDS |
| TCAGCCGGAATGACAGGACC+CGG | 0.584748 | tig0029200:+10749 | Msa1441040:intergenic |
| TTGAAGAAAAGCCATGGAGG+AGG | 0.587815 | tig0029200:+11605 | Msa1441040:intergenic |
| CTGGTCTTGAAGAAAAGCCA+TGG | 0.589502 | tig0029200:+11599 | Msa1441040:intergenic |
| GAACAGCTAAGTGTAGAAGC+AGG | 0.592248 | tig0029200:-9637 | Msa1441040:CDS |
| TCTAATAGGGTGAACAATTG+CGG | 0.596973 | tig0029200:-9801 | Msa1441040:intron |
| ACAGCAGCAGGATTTAGAGA+TGG | 0.603378 | tig0029200:-10495 | Msa1441040:CDS |
| TAAGTGTAGAAGCAGGCGCA+TGG | 0.605128 | tig0029200:-9630 | Msa1441040:CDS |
| TGTTTCAATCATTGAAGACA+AGG | 0.609124 | tig0029200:-9737 | Msa1441040:CDS |
| GAGAAGAGAGAAGTCTCTCG+AGG | 0.610894 | tig0029200:+11654 | Msa1441040:intergenic |
| ACTGATCTTGCAAATCAGTA+GGG | 0.612381 | tig0029200:+11300 | Msa1441040:intergenic |
| CTCCAACAGGCATATCTCCA+AGG | 0.619146 | tig0029200:-9556 | Msa1441040:CDS |
| AGAAGAGAGAAGTCTCTCGA+GGG | 0.619491 | tig0029200:+11655 | Msa1441040:intergenic |
| TACTTTCACAATCTTTACAG+AGG | 0.619763 | tig0029200:+9350 | Msa1441040:intergenic |
| ACAGGCATATCTCCAAGGTA+GGG | 0.623265 | tig0029200:-9551 | Msa1441040:CDS |
| CCGGCTGATGGAAGTGATGG+TGG | 0.631778 | tig0029200:-10734 | Msa1441040:CDS |
| AGGTAGAAAACATCAACAAG+AGG | 0.632388 | tig0029200:-9684 | Msa1441040:CDS |
| CAGAGTCAACGAAGTGACGA+TGG | 0.636128 | tig0029200:-9398 | Msa1441040:CDS |
| CTCTAAATTCATCGGCATGG+AGG | 0.640451 | tig0029200:-9299 | Msa1441040:CDS |
| ATTCCGGCTGATGGAAGTGA+TGG | 0.641493 | tig0029200:-10737 | Msa1441040:CDS |
| GGCTTTATTGTCTCTCATAG+GGG | 0.643215 | tig0029200:-10537 | Msa1441040:CDS |
| AAGGTAGGGACAGTAAAGAA+GGG | 0.646022 | tig0029200:-9537 | Msa1441040:CDS |
| AAACTAGTTACAATGTGTCA+CGG | 0.649683 | tig0029200:+9149 | Msa1441040:intergenic |
| TGTCACGGTACTTGTTACAA+TGG | 0.651312 | tig0029200:+9164 | Msa1441040:intergenic |
| AACCCCGTGGACACAGATCG+AGG | 0.671438 | tig0029200:+10605 | Msa1441040:intergenic |
| ATTTCGGTTTGGAACCAGAG+AGG | 0.674088 | tig0029200:-10694 | Msa1441040:CDS |
| GTCTTGAAGAAAAGCCATGG+AGG | 0.676482 | tig0029200:+11602 | Msa1441040:intergenic |
| AACCTCGATCTGTGTCCACG+GGG | 0.677662 | tig0029200:-10607 | Msa1441040:CDS |
| ACTATGATAAGCAACAACAC+AGG | 0.683625 | tig0029200:+9209 | Msa1441040:intergenic |
| GAGCGACAATCCTAACCCCG+TGG | 0.690626 | tig0029200:+10592 | Msa1441040:intergenic |
| AGAAGGGTGTGGTGACAGCG+AGG | 0.695907 | tig0029200:-9521 | Msa1441040:CDS |
| ACTTCGCGAGAAAGAAACGG+AGG | 0.727027 | tig0029200:-9704 | Msa1441040:CDS |
| TGTGAATGTGAATGGCGACG+AGG | 0.739848 | tig0029200:+11680 | Msa1441030:intergenic |
| ATACATGGAGGAATGTAAGG+TGG | 0.751566 | tig0029200:+11269 | Msa1441030:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGAAAAATATGAATTTTT+AGG | - | tig0029200:9576-9595 | Msa1441040:CDS | 10.0% |
| !!! | TATTTTGTTTTTGATTTTTT+TGG | - | tig0029200:9933-9952 | Msa1441040:intron | 10.0% |
| !!! | ATTTTGTTTTTGATTTTTTT+GGG | - | tig0029200:9934-9953 | Msa1441040:intron | 10.0% |
| !! | TGTGTAAATATTAAATAATA+TGG | + | tig0029200:10415-10434 | Msa1441040:intergenic | 10.0% |
| !!! | ATTATTTTGGAATATTAAGA+GGG | + | tig0029200:9233-9252 | Msa1441040:intergenic | 15.0% |
| !!! | AATTATTTTGGAATATTAAG+AGG | + | tig0029200:9234-9253 | Msa1441040:intergenic | 15.0% |
| !!! | CACTAATCTTAATTAATTTT+TGG | - | tig0029200:9349-9368 | Msa1441040:CDS | 15.0% |
| !!! | ATATGAATTTTTAGGTTTTT+TGG | - | tig0029200:9584-9603 | Msa1441040:CDS | 15.0% |
| !! | TTAATTCAAAATAACCAAAA+GGG | + | tig0029200:9750-9769 | Msa1441040:intergenic | 15.0% |
| !! | TTTAATTCAAAATAACCAAA+AGG | + | tig0029200:9751-9770 | Msa1441040:intergenic | 15.0% |
| !!! | TTTTGTTTTTGATTTTTTTG+GGG | - | tig0029200:9935-9954 | Msa1441040:intron | 15.0% |
| !!! | TAATTAATTTTCTCTCTAAT+AGG | - | tig0029200:10918-10937 | Msa1441040:intron | 15.0% |
| !!! | AATTAATTTTCTCTCTAATA+GGG | - | tig0029200:10919-10938 | Msa1441040:intron | 15.0% |
| !!! | TATTCAGTTTTAGTAAATTT+TGG | - | tig0029200:11644-11663 | Msa1441040:five_prime_UTR | 15.0% |
| !!! | TTATTTTGGAATATTAAGAG+GGG | + | tig0029200:9232-9251 | Msa1441040:intergenic | 20.0% |
| !!! | GAAAGAAATTGGAATTATTT+TGG | + | tig0029200:9246-9265 | Msa1441040:intergenic | 20.0% |
| !! | AGAGAGATTAAAAAAATGTT+TGG | + | tig0029200:9283-9302 | Msa1441040:intergenic | 20.0% |
| !! | AGTGAGAAATAGATAATTAA+AGG | + | tig0029200:9333-9352 | Msa1441040:intergenic | 20.0% |
| !! | AGAAATTTACAAACAATTGA+AGG | - | tig0029200:9380-9399 | Msa1441040:CDS | 20.0% |
| !!! | GTCTATTTAGTATTTTCTTT+AGG | - | tig0029200:9693-9712 | Msa1441040:CDS | 20.0% |
| !!! | ATTTTCTTTAGGTTTTTCTT+AGG | - | tig0029200:9704-9723 | Msa1441040:CDS | 20.0% |
| !!! | TTTTCTTTAGGTTTTTCTTA+GGG | - | tig0029200:9705-9724 | Msa1441040:CDS | 20.0% |
| !!! | TTTCTTTAGCATTTTATTGA+AGG | - | tig0029200:9845-9864 | Msa1441040:intron | 20.0% |
| !!! | TTCTTTAGCATTTTATTGAA+GGG | - | tig0029200:9846-9865 | Msa1441040:intron | 20.0% |
| !!! | GGGTTTTTAGATTTAATTTT+GGG | - | tig0029200:9867-9886 | Msa1441040:intron | 20.0% |
| !!! | TTTGTTTTTGATTTTTTTGG+GGG | - | tig0029200:9936-9955 | Msa1441040:intron | 20.0% |
| !! | AAATGTAAATTCATCATGAT+CGG | - | tig0029200:10381-10400 | Msa1441040:intron | 20.0% |
| !!! | TTTCATATTGGAATTTTCAT+TGG | + | tig0029200:11292-11311 | Msa1441040:intergenic | 20.0% |
| !!! | AACTGGATATTTTATTTCAA+CGG | - | tig0029200:11466-11485 | Msa1441040:intron | 20.0% |
| ! | TAGTAATTACCTGAAAGATT+TGG | + | tig0029200:9203-9222 | Msa1441040:intergenic | 25.0% |
| ! | AAAATGTTTGGTAAAGTGAA+AGG | + | tig0029200:9271-9290 | Msa1441040:intergenic | 25.0% |
| ! | AAATCATTCTACAACACAAA+AGG | + | tig0029200:9646-9665 | Msa1441040:intergenic | 25.0% |
| !!! | TTTCTTTAGGTTTTTCTTAG+GGG | - | tig0029200:9706-9725 | Msa1441040:CDS | 25.0% |
| !! | TCTTTAGCATTTTATTGAAG+GGG | - | tig0029200:9847-9866 | Msa1441040:intron | 25.0% |
| !!! | GGGGTTTTTAGATTTAATTT+TGG | - | tig0029200:9866-9885 | Msa1441040:intron | 25.0% |
| !!! | ACTAAAAGAACAGGATTTTT+TGG | - | tig0029200:10067-10086 | Msa1441040:intron | 25.0% |
| !!! | TTTAGCATCTTATTGGTTTA+TGG | - | tig0029200:10306-10325 | Msa1441040:intron | 25.0% |
| !!! | TTAGCATCTTATTGGTTTAT+GGG | - | tig0029200:10307-10326 | Msa1441040:intron | 25.0% |
| ! | TTCTTCATAGATGCTAAATT+AGG | + | tig0029200:10863-10882 | Msa1441040:intergenic | 25.0% |
| !!! | AACAATTTTAGAGAAAGTTC+AGG | - | tig0029200:10957-10976 | Msa1441040:intron | 25.0% |
| !! | AATCATGTTTTCGTTATATC+TGG | + | tig0029200:11139-11158 | Msa1441040:intergenic | 25.0% |
| ! | TTTCATCAAGTCTTTCATAT+TGG | + | tig0029200:11304-11323 | Msa1441040:intergenic | 25.0% |
| !!! | CAGTTTTAGTAAATTTTGGA+AGG | - | tig0029200:11648-11667 | Msa1441040:five_prime_UTR | 25.0% |
| AGTGAAAGGTAGAAAGAAAT+TGG | + | tig0029200:9257-9276 | Msa1441040:intergenic | 30.0% | |
| AGATGAAGAATTTGCATACA+TGG | + | tig0029200:9482-9501 | Msa1441040:intergenic | 30.0% | |
| TTGACTCAAAATGACCAAAA+GGG | + | tig0029200:9616-9635 | Msa1441040:intergenic | 30.0% | |
| TTTGACTCAAAATGACCAAA+AGG | + | tig0029200:9617-9636 | Msa1441040:intergenic | 30.0% | |
| TCACAACACATGAAAATGTA+GGG | + | tig0029200:9912-9931 | Msa1441040:intergenic | 30.0% | |
| !! | GTTGATTTGCATTGGAATTT+CGG | - | tig0029200:10023-10042 | Msa1441040:intron | 30.0% |
| TAATTCTCAGATATCTTCTG+TGG | - | tig0029200:10094-10113 | Msa1441040:intron | 30.0% | |
| ! | TGTCTAGTTTAGCATCTTAT+TGG | - | tig0029200:10299-10318 | Msa1441040:intron | 30.0% |
| !! | TTTTTGTGCTTGTTAGACAA+TGG | - | tig0029200:10563-10582 | Msa1441040:CDS | 30.0% |
| ! | TTTTCTCTATCTTTGGACAA+TGG | + | tig0029200:10614-10633 | Msa1441040:intergenic | 30.0% |
| ! | CACAATCTTTTCTCTATCTT+TGG | + | tig0029200:10621-10640 | Msa1441040:intergenic | 30.0% |
| ! | TGATTTGTGAAGTAATCGAT+TGG | + | tig0029200:10725-10744 | Msa1441040:intergenic | 30.0% |
| TGTTTCAATCATTGAAGACA+AGG | - | tig0029200:10996-11015 | Msa1441040:intron | 30.0% | |
| AAACATCAACAAGAGGAATA+TGG | - | tig0029200:11056-11075 | Msa1441040:intron | 30.0% | |
| TATGGAACTTGAAGATCAAA+TGG | - | tig0029200:11074-11093 | Msa1441040:intron | 30.0% | |
| GAAAGACTTGATGAAATGTA+AGG | - | tig0029200:11308-11327 | Msa1441040:CDS | 30.0% | |
| TACTTTCACAATCTTTACAG+AGG | + | tig0029200:11386-11405 | Msa1441040:intergenic | 30.0% | |
| AATTTAGAGGATTGACATAG+AGG | + | tig0029200:11423-11442 | Msa1441040:intergenic | 30.0% | |
| TGTCAATCCTCTAAATTCAT+CGG | - | tig0029200:11426-11445 | Msa1441040:intron | 30.0% | |
| AAACTAGTTACAATGTGTCA+CGG | + | tig0029200:11587-11606 | Msa1441040:intergenic | 30.0% | |
| !! | TACCTGAAAGATTTGGTTTG+TGG | + | tig0029200:9196-9215 | Msa1441040:intergenic | 35.0% |
| ACTGATCTTGCAAATCAGTA+GGG | + | tig0029200:9436-9455 | Msa1441040:intergenic | 35.0% | |
| TGAAGAATTTGCATACATGG+AGG | + | tig0029200:9479-9498 | Msa1441040:intergenic | 35.0% | |
| !!! | TTTTTTGGTAGCTACCCTTT+TGG | - | tig0029200:9599-9618 | Msa1441040:CDS | 35.0% |
| ! | GTAGATATAAGCTACCCTTT+TGG | - | tig0029200:9733-9752 | Msa1441040:CDS | 35.0% |
| GTCACAACACATGAAAATGT+AGG | + | tig0029200:9913-9932 | Msa1441040:intergenic | 35.0% | |
| TTTGCATTGGAATTTCGGTT+TGG | - | tig0029200:10028-10047 | Msa1441040:intron | 35.0% | |
| !! | TCTTTTAGTCTTTTCCTCTC+TGG | + | tig0029200:10056-10075 | Msa1441040:intergenic | 35.0% |
| GAGGAAAAGACTAAAAGAAC+AGG | - | tig0029200:10058-10077 | Msa1441040:intron | 35.0% | |
| AATTCATCATGATCGGTAAC+TGG | - | tig0029200:10388-10407 | Msa1441040:intron | 35.0% | |
| ! | GTATGCTGATGATTTGTAAG+TGG | - | tig0029200:10448-10467 | Msa1441040:intron | 35.0% |
| GGTTAGAATGCATCACAATA+CGG | + | tig0029200:10819-10838 | Msa1441040:intergenic | 35.0% | |
| CTCTTACGAGTACAATATAC+AGG | + | tig0029200:10840-10859 | Msa1441040:intergenic | 35.0% | |
| TCTAATAGGGTGAACAATTG+CGG | - | tig0029200:10932-10951 | Msa1441040:intron | 35.0% | |
| ! | TTTCTTTCTCGCGAAGTTTT+TGG | + | tig0029200:11026-11045 | Msa1441040:intergenic | 35.0% |
| AAAACTTCGCGAGAAAGAAA+CGG | - | tig0029200:11026-11045 | Msa1441040:intron | 35.0% | |
| AGGTAGAAAACATCAACAAG+AGG | - | tig0029200:11049-11068 | Msa1441040:intron | 35.0% | |
| ACTATGATAAGCAACAACAC+AGG | + | tig0029200:11527-11546 | Msa1441040:intergenic | 35.0% | |
| !! | TGTCCAAAAGCATAAGCTTT+TGG | - | tig0029200:11698-11717 | Msa1441040:five_prime_UTR | 35.0% |
| !! | GTCCAAAAGCATAAGCTTTT+GGG | - | tig0029200:11699-11718 | Msa1441040:five_prime_UTR | 35.0% |
| ! | ATCCCAAAAGCTTATGCTTT+TGG | + | tig0029200:11704-11723 | Msa1441040:intergenic | 35.0% |
| GAAGAAGAAGAAGAAGAAGG+AGG | + | tig0029200:9106-9125 | Msa0718110:intergenic | 40.0% | |
| GAGGAAGAAGAAGAAGAAGA+AGG | + | tig0029200:9109-9128 | Msa0718110:intergenic | 40.0% | |
| !! | AAAGATTTGGTTTGTGGCTG+AGG | + | tig0029200:9190-9209 | Msa1441040:intergenic | 40.0% |
| AGCCACAAACCAAATCTTTC+AGG | - | tig0029200:9191-9210 | Msa1441040:three_prime_UTR | 40.0% | |
| GACTGATCTTGCAAATCAGT+AGG | + | tig0029200:9437-9456 | Msa1441040:intergenic | 40.0% | |
| ATACATGGAGGAATGTAAGG+TGG | + | tig0029200:9467-9486 | Msa1441040:intergenic | 40.0% | |
| TGCATACATGGAGGAATGTA+AGG | + | tig0029200:9470-9489 | Msa1441040:intergenic | 40.0% | |
| !!! | TCATGTAGTTGGTTTTGCTC+CGG | - | tig0029200:9965-9984 | Msa1441040:intron | 40.0% |
| !! | ATGGTGGTGTTGATTTGCAT+TGG | - | tig0029200:10015-10034 | Msa1441040:intron | 40.0% |
| !! | TCGGCTTTATTGTCTCTCAT+AGG | - | tig0029200:10194-10213 | Msa1441040:intron | 40.0% |
| !! | CGGCTTTATTGTCTCTCATA+GGG | - | tig0029200:10195-10214 | Msa1441040:intron | 40.0% |
| !! | GGCTTTATTGTCTCTCATAG+GGG | - | tig0029200:10196-10215 | Msa1441040:intron | 40.0% |
| TCTCAAGTTTAACCTCCAAC+AGG | - | tig0029200:11164-11183 | Msa1441040:intron | 40.0% | |
| AAGGTAGGGACAGTAAAGAA+GGG | - | tig0029200:11196-11215 | Msa1441040:intron | 40.0% | |
| ! | GATACAGCTTCTTGCTGTAA+TGG | - | tig0029200:11240-11259 | Msa1441040:intron | 40.0% |
| ATCCTCTAAATTCATCGGCA+TGG | - | tig0029200:11431-11450 | Msa1441040:intron | 40.0% | |
| ! | TGTCACGGTACTTGTTACAA+TGG | + | tig0029200:11572-11591 | Msa1441040:intergenic | 40.0% |
| CGAGGGAATGTGAATGTGAA+TGG | + | tig0029200:9064-9083 | Msa0718110:intergenic | 45.0% | |
| AGAAGAGAGAAGTCTCTCGA+GGG | + | tig0029200:9081-9100 | Msa0718110:intergenic | 45.0% | |
| TTGAAGAAAAGCCATGGAGG+AGG | + | tig0029200:9131-9150 | Msa1441040:intergenic | 45.0% | |
| GTCTTGAAGAAAAGCCATGG+AGG | + | tig0029200:9134-9153 | Msa1441040:intergenic | 45.0% | |
| !! | CTGGTCTTGAAGAAAAGCCA+TGG | + | tig0029200:9137-9156 | Msa1441040:intergenic | 45.0% |
| ! | GGGGGTTTAGTTCATGTAGT+TGG | - | tig0029200:9954-9973 | Msa1441040:intron | 45.0% |
| !!! | CATGTAGTTGGTTTTGCTCC+GGG | - | tig0029200:9966-9985 | Msa1441040:intron | 45.0% |
| !! | ATTTCGGTTTGGAACCAGAG+AGG | - | tig0029200:10039-10058 | Msa1441040:intron | 45.0% |
| ACAGCAGCAGGATTTAGAGA+TGG | - | tig0029200:10238-10257 | Msa1441040:intron | 45.0% | |
| GGACAGATTTCTCAAACTGC+AGG | - | tig0029200:10259-10278 | Msa1441040:intron | 45.0% | |
| !! | CTTTCTCGCGAAGTTTTTGG+AGG | + | tig0029200:11023-11042 | Msa1441040:intergenic | 45.0% |
| GAACAGCTAAGTGTAGAAGC+AGG | - | tig0029200:11096-11115 | Msa1441040:intron | 45.0% | |
| TACCTTGGAGATATGCCTGT+TGG | + | tig0029200:11182-11201 | Msa1441040:intergenic | 45.0% | |
| AACAGGCATATCTCCAAGGT+AGG | - | tig0029200:11181-11200 | Msa1441040:intron | 45.0% | |
| ACAGGCATATCTCCAAGGTA+GGG | - | tig0029200:11182-11201 | Msa1441040:intron | 45.0% | |
| CTTCTTTACTGTCCCTACCT+TGG | + | tig0029200:11197-11216 | Msa1441040:intergenic | 45.0% | |
| CAAGGTAGGGACAGTAAAGA+AGG | - | tig0029200:11195-11214 | Msa1441040:intron | 45.0% | |
| CTCCATGCCGATGAATTTAG+AGG | + | tig0029200:11436-11455 | Msa1441040:intergenic | 45.0% | |
| CTCTAAATTCATCGGCATGG+AGG | - | tig0029200:11434-11453 | Msa1441040:intron | 45.0% | |
| CATGGAGGTCTACATGTAAC+TGG | - | tig0029200:11449-11468 | Msa1441040:intron | 45.0% | |
| TGTGAATGTGAATGGCGACG+AGG | + | tig0029200:9056-9075 | Msa0718110:intergenic | 50.0% | |
| GAGAAGAGAGAAGTCTCTCG+AGG | + | tig0029200:9082-9101 | Msa0718110:intergenic | 50.0% | |
| TTCTTCTTCCTCCTCCTCCA+TGG | - | tig0029200:9117-9136 | Msa1441040:three_prime_UTR | 50.0% | |
| AAGAAAAGCCATGGAGGAGG+AGG | + | tig0029200:9128-9147 | Msa1441040:intergenic | 50.0% | |
| GTTGTGGTTGTTGCTGGTAG+TGG | + | tig0029200:9168-9187 | Msa1441040:intergenic | 50.0% | |
| !! | TTGGTTTGTGGCTGAGGTTG+TGG | + | tig0029200:9184-9203 | Msa1441040:intergenic | 50.0% |
| ATTCCGGCTGATGGAAGTGA+TGG | - | tig0029200:9996-10015 | Msa1441040:intron | 50.0% | |
| TGATCGTGAGTTACAGCAGC+AGG | - | tig0029200:10226-10245 | Msa1441040:intron | 50.0% | |
| ! | CTCAAACTGCAGGTTAGCTC+AGG | - | tig0029200:10269-10288 | Msa1441040:intron | 50.0% |
| ACTTCGCGAGAAAGAAACGG+AGG | - | tig0029200:11029-11048 | Msa1441040:intron | 50.0% | |
| TAAGTGTAGAAGCAGGCGCA+TGG | - | tig0029200:11103-11122 | Msa1441040:intron | 50.0% | |
| CTTGGAGATATGCCTGTTGG+AGG | + | tig0029200:11179-11198 | Msa1441040:intergenic | 50.0% | |
| CTCCAACAGGCATATCTCCA+AGG | - | tig0029200:11177-11196 | Msa1441040:intron | 50.0% | |
| AGGGACAGTAAAGAAGGGTG+TGG | - | tig0029200:11201-11220 | Msa1441040:intron | 50.0% | |
| CAGAGTCAACGAAGTGACGA+TGG | - | tig0029200:11335-11354 | Msa1441040:CDS | 50.0% | |
| CAGAGGCAAAGATGCTTGCA+AGG | + | tig0029200:11369-11388 | Msa1441040:intergenic | 50.0% | |
| !! | GCTGGTAGTGGCGTTGAAAC+TGG | + | tig0029200:9156-9175 | Msa1441040:intergenic | 55.0% |
| GCTGAGGTTGTGGTTGTTGC+TGG | + | tig0029200:9174-9193 | Msa1441040:intergenic | 55.0% | |
| AGGTCAGATGTCGCAGCAGA+TGG | - | tig0029200:9400-9419 | Msa1441040:CDS | 55.0% | |
| CTTCCATCAGCCGGAATGAC+AGG | + | tig0029200:9993-10012 | Msa1441040:intergenic | 55.0% | |
| CCACCATCACTTCCATCAGC+CGG | + | tig0029200:10002-10021 | Msa1441040:intergenic | 55.0% | |
| GCAACCTCGATCTGTGTCCA+CGG | - | tig0029200:10124-10143 | Msa1441040:intron | 55.0% | |
| CAACCTCGATCTGTGTCCAC+GGG | - | tig0029200:10125-10144 | Msa1441040:intron | 55.0% | |
| AACCTCGATCTGTGTCCACG+GGG | - | tig0029200:10126-10145 | Msa1441040:intron | 55.0% | |
| AACACTCGCCTGGCTTCAAC+AGG | - | tig0029200:10167-10186 | Msa1441040:intron | 55.0% | |
| CCTGGCTTCAACAGGAGACT+CGG | - | tig0029200:10175-10194 | Msa1441040:intron | 55.0% | |
| TGCTCCGGGTCCTGTCATTC+CGG | - | tig0029200:9980-9999 | Msa1441040:intron | 60.0% | |
| TCAGCCGGAATGACAGGACC+CGG | + | tig0029200:9987-10006 | Msa1441040:intergenic | 60.0% | |
| GGTCCTGTCATTCCGGCTGA+TGG | - | tig0029200:9987-10006 | Msa1441040:intron | 60.0% | |
| CCGGCTGATGGAAGTGATGG+TGG | - | tig0029200:9999-10018 | Msa1441040:intron | 60.0% | |
| AACCCCGTGGACACAGATCG+AGG | + | tig0029200:10131-10150 | Msa1441040:intergenic | 60.0% | |
| CGATCTGTGTCCACGGGGTT+AGG | - | tig0029200:10131-10150 | Msa1441040:intron | 60.0% | |
| GAGCGACAATCCTAACCCCG+TGG | + | tig0029200:10144-10163 | Msa1441040:intergenic | 60.0% | |
| GTCGCTCGATAACACTCGCC+TGG | - | tig0029200:10157-10176 | Msa1441040:intron | 60.0% | |
| CCGAGTCTCCTGTTGAAGCC+AGG | + | tig0029200:10178-10197 | Msa1441040:intergenic | 60.0% | |
| ! | AGAAGGGTGTGGTGACAGCG+AGG | - | tig0029200:11212-11231 | Msa1441040:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029200 | gene | 9013 | 11742 | 9013 | ID=Msa1441040;Name=Msa1441040 |
| tig0029200 | mRNA | 9013 | 11742 | 9013 | ID=Msa1441040-mRNA-1;Parent=Msa1441040;Name=Msa1441040-mRNA-1;_AED=0.16;_eAED=0.16;_QI=123|1|1|1|1|1|4|275|340 |
| tig0029200 | exon | 9013 | 9815 | 9013 | ID=Msa1441040-mRNA-1:exon:12615;Parent=Msa1441040-mRNA-1 |
| tig0029200 | exon | 10475 | 10791 | 10475 | ID=Msa1441040-mRNA-1:exon:12614;Parent=Msa1441040-mRNA-1 |
| tig0029200 | exon | 11273 | 11373 | 11273 | ID=Msa1441040-mRNA-1:exon:12613;Parent=Msa1441040-mRNA-1 |
| tig0029200 | exon | 11543 | 11742 | 11543 | ID=Msa1441040-mRNA-1:exon:12612;Parent=Msa1441040-mRNA-1 |
| tig0029200 | five_prime_UTR | 11620 | 11742 | 11620 | ID=Msa1441040-mRNA-1:five_prime_utr;Parent=Msa1441040-mRNA-1 |
| tig0029200 | CDS | 11543 | 11619 | 11543 | ID=Msa1441040-mRNA-1:cds;Parent=Msa1441040-mRNA-1 |
| tig0029200 | CDS | 11273 | 11373 | 11273 | ID=Msa1441040-mRNA-1:cds;Parent=Msa1441040-mRNA-1 |
| tig0029200 | CDS | 10475 | 10791 | 10475 | ID=Msa1441040-mRNA-1:cds;Parent=Msa1441040-mRNA-1 |
| tig0029200 | CDS | 9288 | 9815 | 9288 | ID=Msa1441040-mRNA-1:cds;Parent=Msa1441040-mRNA-1 |
| tig0029200 | three_prime_UTR | 9013 | 9287 | 9013 | ID=Msa1441040-mRNA-1:three_prime_utr;Parent=Msa1441040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
