Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411250 | sp|Q9Y7K5|YGI3_SCHPO | 28.836 | 378 | 236 | 13 | 66 | 437 | 66 | 416 | 7.50e-35 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411250 | G7ISQ5 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa1411250 | 0.800742 | 1.249776e-48 | -8.615850e-47 |
| Msa0024400 | Msa1411250 | 0.814969 | 1.174878e-51 | -8.615850e-47 |
| Msa0032080 | Msa1411250 | 0.809156 | 2.175138e-50 | -8.615850e-47 |
| Msa0082420 | Msa1411250 | 0.801225 | 9.955334e-49 | -8.615850e-47 |
| Msa0118540 | Msa1411250 | 0.802740 | 4.860409e-49 | -8.615850e-47 |
| Msa1346840 | Msa1411250 | 0.810298 | 1.235650e-50 | -8.615850e-47 |
| Msa1407760 | Msa1411250 | 0.802382 | 5.760379e-49 | -8.615850e-47 |
| Msa1411250 | Msa1441040 | 0.822492 | 2.301174e-53 | -8.615850e-47 |
| Msa0604290 | Msa1411250 | 0.802746 | 4.845883e-49 | -8.615850e-47 |
| Msa0613110 | Msa1411250 | 0.809073 | 2.266173e-50 | -8.615850e-47 |
| Msa0623990 | Msa1411250 | 0.808058 | 3.732880e-50 | -8.615850e-47 |
| Msa0665280 | Msa1411250 | 0.805360 | 1.386260e-49 | -8.615850e-47 |
| Msa0163510 | Msa1411250 | 0.811439 | 6.996914e-51 | -8.615850e-47 |
| Msa0167980 | Msa1411250 | 0.823257 | 1.527066e-53 | -8.615850e-47 |
| Msa0191070 | Msa1411250 | 0.813791 | 2.140877e-51 | -8.615850e-47 |
| Msa0217670 | Msa1411250 | 0.815531 | 8.813783e-52 | -8.615850e-47 |
| Msa0233370 | Msa1411250 | 0.813454 | 2.538574e-51 | -8.615850e-47 |
| Msa0237320 | Msa1411250 | 0.801236 | 9.902305e-49 | -8.615850e-47 |
| Msa1248830 | Msa1411250 | 0.822893 | 1.856762e-53 | -8.615850e-47 |
| Msa1271130 | Msa1411250 | 0.804350 | 2.253695e-49 | -8.615850e-47 |
| Msa1316440 | Msa1411250 | 0.822162 | 2.745080e-53 | -8.615850e-47 |
| Msa1331760 | Msa1411250 | 0.804383 | 2.218297e-49 | -8.615850e-47 |
| Msa0382370 | Msa1411250 | 0.810808 | 9.587242e-51 | -8.615850e-47 |
| Msa0432160 | Msa1411250 | 0.815519 | 8.870864e-52 | -8.615850e-47 |
| Msa0439980 | Msa1411250 | 0.812793 | 3.545322e-51 | -8.615850e-47 |
| Msa0476680 | Msa1411250 | 0.810526 | 1.103281e-50 | -8.615850e-47 |
| Msa0985180 | Msa1411250 | 0.801673 | 8.057314e-49 | -8.615850e-47 |
| Msa1070520 | Msa1411250 | 0.818388 | 2.011763e-52 | -8.615850e-47 |
| Msa1089460 | Msa1411250 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa0241140 | Msa1411250 | 0.800871 | 1.175985e-48 | -8.615850e-47 |
| Msa0257490 | Msa1411250 | 0.823449 | 1.376679e-53 | -8.615850e-47 |
| Msa0277960 | Msa1411250 | 0.850675 | 1.456635e-60 | -8.615850e-47 |
| Msa0296790 | Msa1411250 | 0.809947 | 1.471018e-50 | -8.615850e-47 |
| Msa1213890 | Msa1411250 | 0.802231 | 6.189032e-49 | -8.615850e-47 |
| Msa1218620 | Msa1411250 | 0.807197 | 5.684705e-50 | -8.615850e-47 |
| Msa0521010 | Msa1411250 | 0.817541 | 3.125673e-52 | -8.615850e-47 |
| Msa0525770 | Msa1411250 | 0.833344 | 5.629936e-56 | -8.615850e-47 |
| Msa0527540 | Msa1411250 | 0.811550 | 6.619526e-51 | -8.615850e-47 |
| Msa0527740 | Msa1411250 | 0.802618 | 5.150869e-49 | -8.615850e-47 |
| Msa0542560 | Msa1411250 | 0.803104 | 4.087564e-49 | -8.615850e-47 |
| Msa0878220 | Msa1411250 | 0.818410 | 1.989329e-52 | -8.615850e-47 |
| Msa0943970 | Msa1411250 | 0.808511 | 2.988002e-50 | -8.615850e-47 |
| Msa0944020 | Msa1411250 | 0.821530 | 3.844960e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411250 | MtrunA17_Chr2g0291111 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Msa1411250 | MtrunA17_Chr3g0079951 | 73.649 | 444 | 117 | 0 | 4 | 447 | 3 | 446 | 0.0 | 696 |
| Msa1411250 | MtrunA17_Chr3g0080001 | 66.059 | 439 | 138 | 4 | 1 | 437 | 1 | 430 | 0.0 | 613 |
| Msa1411250 | MtrunA17_Chr7g0222331 | 68.159 | 402 | 127 | 1 | 44 | 445 | 37 | 437 | 0.0 | 596 |
| Msa1411250 | MtrunA17_Chr3g0115611 | 59.045 | 398 | 161 | 2 | 51 | 447 | 61 | 457 | 1.25e-177 | 504 |
| Msa1411250 | MtrunA17_Chr4g0067151 | 26.744 | 172 | 116 | 4 | 281 | 443 | 81 | 251 | 3.83e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411250 | AT3G13340.1 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa1411250 | AT3G13340.3 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa1411250 | AT3G13340.2 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa1411250 | AT1G55680.1 | 71.910 | 445 | 122 | 1 | 1 | 445 | 1 | 442 | 0.0 | 687 |
| Msa1411250 | AT5G56190.2 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa1411250 | AT5G56190.6 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa1411250 | AT5G56190.4 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa1411250 | AT5G56190.5 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa1411250 | AT5G56190.3 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa1411250 | AT5G56190.1 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa1411250 | AT5G56190.7 | 70.387 | 439 | 125 | 2 | 10 | 447 | 27 | 461 | 0.0 | 655 |
| Msa1411250 | AT1G78070.1 | 55.679 | 449 | 196 | 2 | 1 | 447 | 1 | 448 | 2.36e-179 | 509 |
| Msa1411250 | AT1G36070.1 | 55.583 | 412 | 177 | 3 | 37 | 445 | 7 | 415 | 4.72e-172 | 489 |
| Msa1411250 | AT1G36070.2 | 55.610 | 410 | 178 | 3 | 40 | 445 | 5 | 414 | 1.07e-171 | 488 |
| Msa1411250 | AT1G36070.4 | 56.456 | 395 | 169 | 2 | 54 | 445 | 3 | 397 | 3.27e-170 | 484 |
| Msa1411250 | AT1G78070.2 | 57.057 | 333 | 142 | 1 | 115 | 447 | 7 | 338 | 5.42e-145 | 417 |
| Msa1411250 | AT1G78070.3 | 59.306 | 317 | 129 | 0 | 131 | 447 | 23 | 339 | 5.92e-144 | 415 |
| Msa1411250 | AT1G36070.3 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa1411250 | AT1G36070.5 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa1411250 | AT3G49660.1 | 27.517 | 149 | 106 | 2 | 281 | 428 | 74 | 221 | 2.40e-11 | 65.1 |
Find 140 sgRNAs with CRISPR-Local
Find 394 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATTGTATTACGATTTC+TGG | 0.130313 | tig0023748:+28308 | Msa1411250:CDS |
| TCTGAAGTTCTCAATGTATC+AGG | 0.276261 | tig0023748:+28757 | Msa1411250:CDS |
| GTAGAATGGCTTACATTTAC+TGG | 0.277210 | tig0023748:-30316 | None:intergenic |
| GAGTGCAAAGTAACACAAAA+AGG | 0.280473 | tig0023748:+28286 | Msa1411250:CDS |
| ATTACAAGTTGTTTCCCATT+AGG | 0.291190 | tig0023748:-32243 | None:intergenic |
| AAGATAAAACATGCCGCATT+TGG | 0.295126 | tig0023748:+32509 | Msa1411250:CDS |
| CACATCTGATGGGCGGTATA+TGG | 0.306053 | tig0023748:+32603 | Msa1411250:CDS |
| CAGTGGAGCTGTACATTTCA+TGG | 0.316630 | tig0023748:+30216 | Msa1411250:intron |
| CTGCAGTGGTATCTGTTATT+CGG | 0.324070 | tig0023748:-28018 | None:intergenic |
| CAAACAATGATGGTGGAATC+AGG | 0.329381 | tig0023748:+30242 | Msa1411250:CDS |
| TAGGGTTTGTTCTGGATCTC+AGG | 0.330252 | tig0023748:-26995 | None:intergenic |
| CGTGATAACTTGTTGATTGC+TGG | 0.331239 | tig0023748:+28937 | Msa1411250:CDS |
| AGGTGCAGCGCCTTGAGGTT+AGG | 0.334060 | tig0023748:-27014 | None:intergenic |
| CATACTTCATTAAGCCCTAA+TGG | 0.339680 | tig0023748:+32228 | Msa1411250:CDS |
| TATGAAAATATACCACAATC+TGG | 0.344776 | tig0023748:+28142 | Msa1411250:CDS |
| AGACAACCCAGATGGTTTAC+TGG | 0.344951 | tig0023748:+32272 | Msa1411250:CDS |
| TTACAAGTTGTTTCCCATTA+GGG | 0.345847 | tig0023748:-32242 | None:intergenic |
| CTTGAGGTTAGGGTTTGTTC+TGG | 0.360436 | tig0023748:-27003 | None:intergenic |
| CGACGATGAATATGATCCTT+TGG | 0.365677 | tig0023748:+27645 | Msa1411250:CDS |
| AAAGTCTGTTGCTGTTCTTA+AGG | 0.371400 | tig0023748:+32549 | Msa1411250:CDS |
| AAGTCTGTTGCTGTTCTTAA+GGG | 0.372378 | tig0023748:+32550 | Msa1411250:CDS |
| GGTGCAGCGCCTTGAGGTTA+GGG | 0.380631 | tig0023748:-27013 | None:intergenic |
| TGCAGCTGAGAAACTTAGTT+TGG | 0.385464 | tig0023748:+28659 | Msa1411250:intron |
| GGGAAACAACTTGTAATTGT+TGG | 0.386167 | tig0023748:+32249 | Msa1411250:CDS |
| CCAATCCCCAACACAGAATC+AGG | 0.390571 | tig0023748:+27040 | Msa1411250:five_prime_UTR |
| CGAAGCACTCATGCTTTCCT+TGG | 0.393926 | tig0023748:+30293 | Msa1411250:CDS |
| AAACCCTCCAAGAGGCTTCC+CGG | 0.396154 | tig0023748:-28883 | None:intergenic |
| CCTGATTCTGTGTTGGGGAT+TGG | 0.410269 | tig0023748:-27040 | None:intergenic |
| CACATTACTCAATTGTTCAC+TGG | 0.413639 | tig0023748:+28713 | Msa1411250:CDS |
| TGGAATCAGGGACTTTGATA+TGG | 0.416103 | tig0023748:+30255 | Msa1411250:CDS |
| GAATTGCGATGAAGCAGATT+TGG | 0.418964 | tig0023748:-26942 | None:intergenic |
| TTTCTTCTTTCTACTTCCCT+TGG | 0.428627 | tig0023748:-32917 | None:intergenic |
| TTGTTCTCGAACTACGTATG+AGG | 0.432983 | tig0023748:+30018 | Msa1411250:CDS |
| AGATAAAACATGCCGCATTT+GGG | 0.435179 | tig0023748:+32510 | Msa1411250:CDS |
| TGGTGACCTGATTCTGTGTT+GGG | 0.435677 | tig0023748:-27046 | None:intergenic |
| CATGCCGCATTTGGGATGTT+CGG | 0.441423 | tig0023748:+32518 | Msa1411250:CDS |
| AAACATGGCTTGAGGATGTT+GGG | 0.443968 | tig0023748:+32971 | Msa1411250:three_prime_UTR |
| GTTAAATAATAATTAAAGAA+AGG | 0.445489 | tig0023748:+33012 | Msa1411250:three_prime_UTR |
| TGTTCTGGATCTCAGGGATA+AGG | 0.445855 | tig0023748:-26988 | None:intergenic |
| TCAATACCATGGGGATGAAA+TGG | 0.455707 | tig0023748:+27525 | Msa1411250:CDS |
| ATACTTCATTAAGCCCTAAT+GGG | 0.456324 | tig0023748:+32229 | Msa1411250:CDS |
| TTACTGGTGGATGCTCAAAC+TGG | 0.459274 | tig0023748:+32288 | Msa1411250:CDS |
| GAAACATCCGGGAAGCCTCT+TGG | 0.460435 | tig0023748:+28876 | Msa1411250:intron |
| TTAAATAATAATTAAAGAAA+GGG | 0.461364 | tig0023748:+33013 | Msa1411250:three_prime_UTR |
| ATGAAAATATACCACAATCT+GGG | 0.463494 | tig0023748:+28143 | Msa1411250:CDS |
| GTGATAACTTGTTGATTGCT+GGG | 0.466192 | tig0023748:+28938 | Msa1411250:CDS |
| TGCACCTCTATGCGGACACT+TGG | 0.466389 | tig0023748:+32429 | Msa1411250:CDS |
| TCAATACGCTTCACATCTGA+TGG | 0.477657 | tig0023748:+32592 | Msa1411250:CDS |
| GCATCCACCAGTAAACCATC+TGG | 0.480791 | tig0023748:-32279 | None:intergenic |
| TTTCGTGGCGGGAGAGCGCT+TGG | 0.483027 | tig0023748:+27598 | Msa1411250:CDS |
| AATCAAGATAGGTATAGTTT+CGG | 0.485908 | tig0023748:-32804 | None:intergenic |
| AATTTACAAGTAATCAAGAT+AGG | 0.487243 | tig0023748:-32815 | None:intergenic |
| GCTGTTCTTAAGGGGAACCT+TGG | 0.487880 | tig0023748:+32559 | Msa1411250:CDS |
| ATGAAGTATTGTTGACTTCA+CGG | 0.491114 | tig0023748:-28344 | None:intergenic |
| AGGGTTTGTTCTGGATCTCA+GGG | 0.497049 | tig0023748:-26994 | None:intergenic |
| CACTGCAGCTGAAGCTAGGA+GGG | 0.506637 | tig0023748:+28033 | Msa1411250:CDS |
| TTCATGGCTTCAAACAATGA+TGG | 0.511644 | tig0023748:+30232 | Msa1411250:CDS |
| TCTGACAGTTCCCCAGATTG+TGG | 0.511760 | tig0023748:-28154 | None:intergenic |
| AGGATATTCAAGGTATACCT+TGG | 0.520079 | tig0023748:+28059 | Msa1411250:CDS |
| TTGAGATTTATGAGCATCCC+AGG | 0.524294 | tig0023748:+30062 | Msa1411250:CDS |
| TGCAGTACTTAGACCGACCC+GGG | 0.525488 | tig0023748:+29987 | Msa1411250:intron |
| CCTCCTAGCTTCAGCTGCAG+TGG | 0.526982 | tig0023748:-28032 | None:intergenic |
| ATAATTAAAGAAAGGGAAGG+AGG | 0.528850 | tig0023748:+33020 | Msa1411250:three_prime_UTR |
| GGTGTATGGGATCGTACCTA+TGG | 0.529375 | tig0023748:+32757 | Msa1411250:CDS |
| ATACCACTGCAGCTGAAGCT+AGG | 0.532089 | tig0023748:+28029 | Msa1411250:CDS |
| GGATATTCAAGGTATACCTT+GGG | 0.533298 | tig0023748:+28060 | Msa1411250:CDS |
| TGCAAAGCAAGGATTTGAAA+AGG | 0.535038 | tig0023748:+32663 | Msa1411250:CDS |
| CTTGGATTATTCATTTGCAT+CGG | 0.538168 | tig0023748:+32447 | Msa1411250:CDS |
| TCTTTAATTATTATTTAACA+TGG | 0.541092 | tig0023748:-33008 | None:intergenic |
| TCTGTGTTGGGGATTGGTGA+AGG | 0.541497 | tig0023748:-27034 | None:intergenic |
| TCAAGGAGAGCTTATTTGCA+AGG | 0.543023 | tig0023748:+28966 | Msa1411250:CDS |
| GTGTTGCTAACAGAAACATC+CGG | 0.547014 | tig0023748:+28864 | Msa1411250:intron |
| ATGGTGACCTGATTCTGTGT+TGG | 0.550430 | tig0023748:-27047 | None:intergenic |
| CAGAACATGGCTCAATACCA+TGG | 0.553820 | tig0023748:+27514 | Msa1411250:exon |
| GCATCGGCATGGCATCCTGA+TGG | 0.554082 | tig0023748:+32463 | Msa1411250:CDS |
| AAACAATGATGGTGGAATCA+GGG | 0.554650 | tig0023748:+30243 | Msa1411250:CDS |
| TGGCTTACATTTACTGGCCA+AGG | 0.556085 | tig0023748:-30310 | None:intergenic |
| AAAACATGGCTTGAGGATGT+TGG | 0.557034 | tig0023748:+32970 | Msa1411250:three_prime_UTR |
| ACATCCGGGAAGCCTCTTGG+AGG | 0.557479 | tig0023748:+28879 | Msa1411250:CDS |
| AGGAGGGGAAAGGATATTCA+AGG | 0.561263 | tig0023748:+28049 | Msa1411250:CDS |
| AAGGGAAGTAGAAAGAAGAA+AGG | 0.562761 | tig0023748:+32919 | Msa1411250:three_prime_UTR |
| TAATTAAAGAAAGGGAAGGA+GGG | 0.565551 | tig0023748:+33021 | Msa1411250:three_prime_UTR |
| GACAGTATTTATATTACCAA+GGG | 0.566044 | tig0023748:+32901 | Msa1411250:three_prime_UTR |
| TGAAATTCACAGATATCAAG+TGG | 0.570848 | tig0023748:+27479 | Msa1411250:intron |
| ATTATTCATTTGCATCGGCA+TGG | 0.572987 | tig0023748:+32452 | Msa1411250:CDS |
| TAGACATGCACAAAGTCAGC+TGG | 0.575901 | tig0023748:-32637 | None:intergenic |
| TGACAGTATTTATATTACCA+AGG | 0.578605 | tig0023748:+32900 | Msa1411250:three_prime_UTR |
| AGAAGAAAGGTGAACTGACA+TGG | 0.580682 | tig0023748:+32932 | Msa1411250:three_prime_UTR |
| AGAACATGGCTCAATACCAT+GGG | 0.581287 | tig0023748:+27515 | Msa1411250:exon |
| ATGGCTTCAAACAATGATGG+TGG | 0.583087 | tig0023748:+30235 | Msa1411250:CDS |
| CATCCGGGAAGCCTCTTGGA+GGG | 0.591045 | tig0023748:+28880 | Msa1411250:CDS |
| AGTCTGTTGCTGTTCTTAAG+GGG | 0.593366 | tig0023748:+32551 | Msa1411250:CDS |
| CTGAAGTTCTCAATGTATCA+GGG | 0.594254 | tig0023748:+28758 | Msa1411250:CDS |
| TGAAAATATACCACAATCTG+GGG | 0.594686 | tig0023748:+28144 | Msa1411250:CDS |
| CCACTGCAGCTGAAGCTAGG+AGG | 0.595739 | tig0023748:+28032 | Msa1411250:CDS |
| AGCTGAAGCTAGGAGGGGAA+AGG | 0.598359 | tig0023748:+28039 | Msa1411250:CDS |
| GGTGAAGGTGCAGCGCCTTG+AGG | 0.600594 | tig0023748:-27019 | None:intergenic |
| CGAGAACAAAAGCTAACCCC+GGG | 0.608346 | tig0023748:-30004 | None:intergenic |
| ATAATAATTAAAGAAAGGGA+AGG | 0.609438 | tig0023748:+33017 | Msa1411250:three_prime_UTR |
| TTCAAGGTATACCTTGGGAT+AGG | 0.609582 | tig0023748:+28065 | Msa1411250:CDS |
| ATCTGGGGAACTGTCAGAGA+AGG | 0.611294 | tig0023748:+28159 | Msa1411250:CDS |
| GAACTGAAGAAGACTTCCAT+AGG | 0.612333 | tig0023748:-32773 | None:intergenic |
| TTGCAGTACTTAGACCGACC+CGG | 0.612988 | tig0023748:+29986 | Msa1411250:intron |
| GCACAAATTATTACCTCACA+TGG | 0.613998 | tig0023748:-28790 | None:intergenic |
| CATCCACCAGTAAACCATCT+GGG | 0.614282 | tig0023748:-32278 | None:intergenic |
| TGATAACTTGTTGATTGCTG+GGG | 0.614938 | tig0023748:+28939 | Msa1411250:CDS |
| TGTTGCTAACAGAAACATCC+GGG | 0.615478 | tig0023748:+28865 | Msa1411250:intron |
| GGTGGATGCTCAAACTGGAA+AGG | 0.616996 | tig0023748:+32293 | Msa1411250:CDS |
| CATACTCCATTTCATCCCCA+TGG | 0.617585 | tig0023748:-27531 | None:intergenic |
| TGATGGGCGGTATATGGCAA+TGG | 0.618608 | tig0023748:+32609 | Msa1411250:CDS |
| AGATGATAATGAGATGGCTG+AGG | 0.621081 | tig0023748:+27558 | Msa1411250:CDS |
| ATTGTTGGAGACAACCCAGA+TGG | 0.621293 | tig0023748:+32264 | Msa1411250:CDS |
| GTGAACTCTACCGCAGAACA+TGG | 0.621753 | tig0023748:+27501 | Msa1411250:exon |
| TAATCCAAGTGTCCGCATAG+AGG | 0.626398 | tig0023748:-32433 | None:intergenic |
| CAGAACAAACCCTAACCTCA+AGG | 0.626634 | tig0023748:+27004 | Msa1411250:five_prime_UTR |
| TCGAGAACAAAAGCTAACCC+CGG | 0.626956 | tig0023748:-30005 | None:intergenic |
| CAATACGCTTCACATCTGAT+GGG | 0.630378 | tig0023748:+32593 | Msa1411250:CDS |
| AACATGGCTTGAGGATGTTG+GGG | 0.633707 | tig0023748:+32972 | Msa1411250:three_prime_UTR |
| TCAGACACAAATTAGTACAC+TGG | 0.635185 | tig0023748:+28909 | Msa1411250:CDS |
| CAACCCAGATGGTTTACTGG+TGG | 0.637863 | tig0023748:+32275 | Msa1411250:CDS |
| AAATACTAGACAAAAGTACA+TGG | 0.641672 | tig0023748:-32861 | None:intergenic |
| GGTGACCTGATTCTGTGTTG+GGG | 0.643916 | tig0023748:-27045 | None:intergenic |
| TCATCATATAGTGTAAAACA+TGG | 0.649993 | tig0023748:+32956 | Msa1411250:three_prime_UTR |
| GATTCCGAACATCCCAAATG+CGG | 0.650878 | tig0023748:-32522 | None:intergenic |
| TGGTATTGAGCCATGTTCTG+CGG | 0.651543 | tig0023748:-27511 | None:intergenic |
| TGGTGAATCTGATACTGATG+AGG | 0.652098 | tig0023748:+27618 | Msa1411250:CDS |
| AACAAAAGCTAACCCCGGGT+CGG | 0.654067 | tig0023748:-30000 | None:intergenic |
| GATAACTTGTTGATTGCTGG+GGG | 0.661769 | tig0023748:+28940 | Msa1411250:CDS |
| AGGGCATGTTGCTCCATGTG+AGG | 0.663284 | tig0023748:+28777 | Msa1411250:CDS |
| TACGCTTCACATCTGATGGG+CGG | 0.669620 | tig0023748:+32596 | Msa1411250:CDS |
| ACTGCAGCTGAAGCTAGGAG+GGG | 0.672337 | tig0023748:+28034 | Msa1411250:CDS |
| TGTTCAAGATGATAATGAGA+TGG | 0.677180 | tig0023748:+27552 | Msa1411250:CDS |
| GTATTGAGCGTATAGCTCCA+AGG | 0.677573 | tig0023748:-32576 | None:intergenic |
| CATGTCTATGATGCAAAGCA+AGG | 0.680192 | tig0023748:+32652 | Msa1411250:CDS |
| TCTGAGTAAAACCCTCCAAG+AGG | 0.686637 | tig0023748:-28891 | None:intergenic |
| GTAATGCTCAGCCTATCCCA+AGG | 0.694656 | tig0023748:-28076 | None:intergenic |
| TAGACTATTGCACCTCTATG+CGG | 0.699150 | tig0023748:+32421 | Msa1411250:intron |
| ATAGTGTAAAACATGGCTTG+AGG | 0.708015 | tig0023748:+32963 | Msa1411250:three_prime_UTR |
| GCAGTACTTAGACCGACCCG+GGG | 0.732422 | tig0023748:+29988 | Msa1411250:intron |
| GAACATGGCTCAATACCATG+GGG | 0.755547 | tig0023748:+27516 | Msa1411250:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTAATTAAATTAT+CGG | - | tig0023748:28617-28636 | None:intergenic | 0.0% |
| !!! | AATTTCTTTTTTTTTTTTTG+TGG | + | tig0023748:27722-27741 | Msa1411250:intron | 10.0% |
| !!! | ATTTCTTTTTTTTTTTTTGT+GGG | + | tig0023748:27723-27742 | Msa1411250:intron | 10.0% |
| !! | GGTAAAAAAATATATATAAA+AGG | - | tig0023748:29240-29259 | None:intergenic | 10.0% |
| !! | AAAATATAAGAAAAAAAGAA+GGG | - | tig0023748:30111-30130 | None:intergenic | 10.0% |
| !! | TAAAATATAAGAAAAAAAGA+AGG | - | tig0023748:30112-30131 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTCTTATATTTT+AGG | + | tig0023748:30111-30130 | Msa1411250:intron | 10.0% |
| !!! | TCTTTTTTTCTTATATTTTA+GGG | + | tig0023748:30112-30131 | Msa1411250:intron | 10.0% |
| !! | TAAAAAATAAAATAAAAGAG+GGG | - | tig0023748:30670-30689 | None:intergenic | 10.0% |
| !!! | AAGAGTATAAAATATATTTA+CGG | - | tig0023748:31165-31184 | None:intergenic | 10.0% |
| !! | AATTAATAGCTAAAAATAAA+TGG | - | tig0023748:31381-31400 | None:intergenic | 10.0% |
| !!! | CTATTTTTAAATATTTGTAT+AGG | - | tig0023748:31596-31615 | None:intergenic | 10.0% |
| !! | CTATACAAATATTTAAAAAT+AGG | + | tig0023748:31594-31613 | Msa1411250:intron | 10.0% |
| !! | TCTTTAATTATTATTTAACA+TGG | - | tig0023748:33011-33030 | None:intergenic | 10.0% |
| !! | GTTAAATAATAATTAAAGAA+AGG | + | tig0023748:33012-33031 | Msa1411250:three_prime_UTR | 10.0% |
| !! | AATTAAATTGAATTGAATTG+AGG | - | tig0023748:27145-27164 | None:intergenic | 15.0% |
| !!! | CTGAATTTTATAAACTAATT+TGG | + | tig0023748:27444-27463 | Msa1411250:intron | 15.0% |
| !!! | AAAAGAAAAAAAAAGGTATA+GGG | - | tig0023748:28251-28270 | None:intergenic | 15.0% |
| !! | TAAAATCAGAAAGTTATAAA+AGG | - | tig0023748:29326-29345 | None:intergenic | 15.0% |
| !! | TACTATAACTAAAATCATAT+GGG | - | tig0023748:29351-29370 | None:intergenic | 15.0% |
| !! | TTACTATAACTAAAATCATA+TGG | - | tig0023748:29352-29371 | None:intergenic | 15.0% |
| !! | AAATATAAGAAAAAAAGAAG+GGG | - | tig0023748:30110-30129 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATAAAAGAGG+GGG | - | tig0023748:30669-30688 | None:intergenic | 15.0% |
| !!! | GTATAGTTTTATTTAAATCA+TGG | - | tig0023748:30889-30908 | None:intergenic | 15.0% |
| !! | ACAAAAATAGAAAACAAAAA+AGG | - | tig0023748:31471-31490 | None:intergenic | 15.0% |
| !! | ATGTAAAACAAAACATTAAT+TGG | + | tig0023748:31905-31924 | Msa1411250:intron | 15.0% |
| !!! | AATTTTCATATACTAGAATT+GGG | - | tig0023748:32178-32197 | None:intergenic | 15.0% |
| !!! | AAATTTTCATATACTAGAAT+TGG | - | tig0023748:32179-32198 | None:intergenic | 15.0% |
| !!! | TATTTTACGCAAATTTTGTT+CGG | + | tig0023748:27212-27231 | Msa1411250:intron | 20.0% |
| !! | ATATCTGTGAATTTCATAAA+TGG | - | tig0023748:27475-27494 | None:intergenic | 20.0% |
| !! | TTGAATGACATTTGTATTAT+TGG | + | tig0023748:27804-27823 | Msa1411250:intron | 20.0% |
| !!! | GAAAAGAAAAAAAAAGGTAT+AGG | - | tig0023748:28252-28271 | None:intergenic | 20.0% |
| !! | TAATTAAGAATTAACGTACT+TGG | - | tig0023748:28372-28391 | None:intergenic | 20.0% |
| !! | CTTCAAATGATTAAACTAAA+AGG | - | tig0023748:28399-28418 | None:intergenic | 20.0% |
| !! | ATGTATTAACTAGATTTAGA+TGG | - | tig0023748:28589-28608 | None:intergenic | 20.0% |
| !! | GAAGAAAATTACAAGTAAAT+AGG | - | tig0023748:28996-29015 | None:intergenic | 20.0% |
| !! | ACATACACAATTATACATAT+GGG | - | tig0023748:29298-29317 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+TGG | - | tig0023748:29299-29318 | None:intergenic | 20.0% |
| !! | ATAAAAAGTTCATGTGATAA+GGG | - | tig0023748:29388-29407 | None:intergenic | 20.0% |
| !!! | TTCTAAACAGTAAAGTATTA+GGG | - | tig0023748:29434-29453 | None:intergenic | 20.0% |
| !!! | TTTCTAAACAGTAAAGTATT+AGG | - | tig0023748:29435-29454 | None:intergenic | 20.0% |
| !!! | AACAATTTGTTTTTGAGATA+CGG | + | tig0023748:29864-29883 | Msa1411250:intron | 20.0% |
| !!! | AGAACTACTTAATTATGTTT+TGG | + | tig0023748:30590-30609 | Msa1411250:intron | 20.0% |
| !! | AAGAAATTCAATTCAATTCA+AGG | - | tig0023748:30976-30995 | None:intergenic | 20.0% |
| !!! | TTTGATAATATACTCCTTTA+AGG | + | tig0023748:31066-31085 | Msa1411250:intron | 20.0% |
| !! | TGACTATCATTTCAATTAAT+TGG | + | tig0023748:31198-31217 | Msa1411250:intron | 20.0% |
| !! | AACGTAGTAATATTCAAAAT+TGG | - | tig0023748:31525-31544 | None:intergenic | 20.0% |
| !! | AGGAAATAAGTAAAAATAAG+AGG | + | tig0023748:31614-31633 | Msa1411250:intron | 20.0% |
| !! | AAATAAGTAAAAATAAGAGG+TGG | + | tig0023748:31617-31636 | Msa1411250:intron | 20.0% |
| !! | AAATGAAGGTTATAAATCAA+GGG | - | tig0023748:31663-31682 | None:intergenic | 20.0% |
| !! | AAAATGAAGGTTATAAATCA+AGG | - | tig0023748:31664-31683 | None:intergenic | 20.0% |
| !! | TAAAACAAAACATTAATTGG+AGG | + | tig0023748:31908-31927 | Msa1411250:intron | 20.0% |
| !! | AATTTACAAGTAATCAAGAT+AGG | - | tig0023748:32818-32837 | None:intergenic | 20.0% |
| !! | ATAATAATTAAAGAAAGGGA+AGG | + | tig0023748:33017-33036 | Msa1411250:three_prime_UTR | 20.0% |
| !! | AAGCAGATTTGGAAATTTTA+CGG | - | tig0023748:26934-26953 | None:intergenic | 25.0% |
| ! | AAGCAATTGAAATTGATTGA+AGG | - | tig0023748:27106-27125 | None:intergenic | 25.0% |
| ! | ATTGAATTGAGGAAATTAAG+AGG | - | tig0023748:27134-27153 | None:intergenic | 25.0% |
| ! | CATAATCATTAAGCGAATTA+AGG | - | tig0023748:27174-27193 | None:intergenic | 25.0% |
| !! | TTAAAATTAGTTTAGCACGA+AGG | - | tig0023748:27273-27292 | None:intergenic | 25.0% |
| !! | AAACTAATTTTAAGCGGTTT+AGG | + | tig0023748:27280-27299 | Msa1411250:intron | 25.0% |
| ! | AAAGACTAAAAACAAACCAA+AGG | - | tig0023748:27664-27683 | None:intergenic | 25.0% |
| ! | GATTAATATTTACTACCATG+TGG | + | tig0023748:27923-27942 | Msa1411250:intron | 25.0% |
| ! | AGAAGGAAAAATTATGTCAA+TGG | - | tig0023748:27949-27968 | None:intergenic | 25.0% |
| ! | TATGAAAATATACCACAATC+TGG | + | tig0023748:28142-28161 | Msa1411250:CDS | 25.0% |
| ! | ATGAAAATATACCACAATCT+GGG | + | tig0023748:28143-28162 | Msa1411250:CDS | 25.0% |
| ! | CAGAGAGAAAAGAAAAAAAA+AGG | - | tig0023748:28258-28277 | None:intergenic | 25.0% |
| ! | AGACAATATAACATGGAATT+TGG | - | tig0023748:28443-28462 | None:intergenic | 25.0% |
| !!! | TGATAAGTTGTTTTGTTATG+TGG | + | tig0023748:28537-28556 | Msa1411250:intron | 25.0% |
| !!! | GATAAGTTGTTTTGTTATGT+GGG | + | tig0023748:28538-28557 | Msa1411250:intron | 25.0% |
| !!! | CTCATCAGTTTTTAAAACAT+TGG | - | tig0023748:29069-29088 | None:intergenic | 25.0% |
| ! | CATAAAAAGTTCATGTGATA+AGG | - | tig0023748:29389-29408 | None:intergenic | 25.0% |
| !! | CTTATCACATGAACTTTTTA+TGG | + | tig0023748:29387-29406 | Msa1411250:intron | 25.0% |
| !!! | TACCACTTTTCTTTTTGATA+TGG | + | tig0023748:29629-29648 | Msa1411250:intron | 25.0% |
| ! | AACCATATCAAAAAGAAAAG+TGG | - | tig0023748:29634-29653 | None:intergenic | 25.0% |
| ! | TTAAAAGTGACATTAATCTG+AGG | + | tig0023748:29928-29947 | Msa1411250:intron | 25.0% |
| !!! | ATTTTAGGGTCTTAAATTGT+TGG | + | tig0023748:30126-30145 | Msa1411250:intron | 25.0% |
| ! | ATTATTACTAGAAATGATCC+AGG | + | tig0023748:30407-30426 | Msa1411250:intron | 25.0% |
| !!! | CTTTAGGATTACAAATACAA+TGG | + | tig0023748:30541-30560 | Msa1411250:intron | 25.0% |
| !!! | AAATACAATGGATTGTGAAT+AGG | + | tig0023748:30553-30572 | Msa1411250:intron | 25.0% |
| !!! | AATACAATGGATTGTGAATA+GGG | + | tig0023748:30554-30573 | Msa1411250:intron | 25.0% |
| ! | AAATTCAATTCAATTCAAGG+AGG | - | tig0023748:30973-30992 | None:intergenic | 25.0% |
| ! | TGAAAATAGAACACTAAACA+AGG | - | tig0023748:31025-31044 | None:intergenic | 25.0% |
| ! | TGAAATGATAGTCAACATTT+AGG | - | tig0023748:31192-31211 | None:intergenic | 25.0% |
| ! | ATCATTTCAATTAATTGGAG+AGG | + | tig0023748:31203-31222 | Msa1411250:intron | 25.0% |
| ! | GCTAAAAATAAATGGATCTA+AGG | - | tig0023748:31373-31392 | None:intergenic | 25.0% |
| ! | ATTTCGTCATGTAGAAATAA+GGG | - | tig0023748:31415-31434 | None:intergenic | 25.0% |
| ! | AATTTCGTCATGTAGAAATA+AGG | - | tig0023748:31416-31435 | None:intergenic | 25.0% |
| ! | TGGAAATCAAGTAGAAATAA+GGG | - | tig0023748:31505-31524 | None:intergenic | 25.0% |
| ! | TTGGAAATCAAGTAGAAATA+AGG | - | tig0023748:31506-31525 | None:intergenic | 25.0% |
| !!! | TGGTATTTTTGTGACTAAAT+AGG | + | tig0023748:31637-31656 | Msa1411250:intron | 25.0% |
| !!! | TTTTTTTCAAATGCAAACAG+TGG | + | tig0023748:31710-31729 | Msa1411250:intron | 25.0% |
| !! | ACAAATTTAGGAGTATGTTA+CGG | + | tig0023748:31932-31951 | Msa1411250:intron | 25.0% |
| ! | AATAGTTATGAGATAGTTGT+AGG | - | tig0023748:32000-32019 | None:intergenic | 25.0% |
| ! | GATAAATTTGTCCTTTGTAT+AGG | + | tig0023748:32044-32063 | Msa1411250:intron | 25.0% |
| ! | AATCAAGATAGGTATAGTTT+CGG | - | tig0023748:32807-32826 | None:intergenic | 25.0% |
| !! | AAATACTAGACAAAAGTACA+TGG | - | tig0023748:32864-32883 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTCTAGTATTT+AGG | + | tig0023748:32864-32883 | Msa1411250:three_prime_UTR | 25.0% |
| ! | TGACAGTATTTATATTACCA+AGG | + | tig0023748:32900-32919 | Msa1411250:three_prime_UTR | 25.0% |
| ! | GACAGTATTTATATTACCAA+GGG | + | tig0023748:32901-32920 | Msa1411250:three_prime_UTR | 25.0% |
| ! | TCATCATATAGTGTAAAACA+TGG | + | tig0023748:32956-32975 | Msa1411250:three_prime_UTR | 25.0% |
| !! | ATCTTGCTTATACATGTTTT+TGG | + | tig0023748:33054-33073 | Msa1411250:three_prime_UTR | 25.0% |
| ! | AGATTGATGAGTTGAGAAAA+TGG | - | tig0023748:27069-27088 | None:intergenic | 30.0% |
| !!! | GATTTAGGTTTTTAGTTTCG+AGG | + | tig0023748:27234-27253 | Msa1411250:intron | 30.0% |
| ! | CGTGCTAAACTAATTTTAAG+CGG | + | tig0023748:27274-27293 | Msa1411250:intron | 30.0% |
| TGAAATTCACAGATATCAAG+TGG | + | tig0023748:27479-27498 | Msa1411250:intron | 30.0% | |
| ! | TGTTCAAGATGATAATGAGA+TGG | + | tig0023748:27552-27571 | Msa1411250:CDS | 30.0% |
| ! | GATGATGATATGTATTTTCG+TGG | + | tig0023748:27583-27602 | Msa1411250:CDS | 30.0% |
| TCGAATTCAAACTGTAACAA+AGG | - | tig0023748:27701-27720 | None:intergenic | 30.0% | |
| ! | TCCGTTTGAAAAACTTTTGA+GGG | + | tig0023748:27759-27778 | Msa1411250:intron | 30.0% |
| !! | ACCCTCAAAAGTTTTTCAAA+CGG | - | tig0023748:27763-27782 | None:intergenic | 30.0% |
| ! | TATTCGGTTTTCCTGTAATA+AGG | - | tig0023748:28005-28024 | None:intergenic | 30.0% |
| TGAAAATATACCACAATCTG+GGG | + | tig0023748:28144-28163 | Msa1411250:CDS | 30.0% | |
| AGTGCAAAGTAACACAAAAA+GGG | + | tig0023748:28287-28306 | Msa1411250:CDS | 30.0% | |
| !! | ATGAAGTATTGTTGACTTCA+CGG | - | tig0023748:28347-28366 | None:intergenic | 30.0% |
| CATCTTCAGACAATATAACA+TGG | - | tig0023748:28450-28469 | None:intergenic | 30.0% | |
| ! | TTGTTGTTAGAGTATCACTT+AGG | + | tig0023748:28819-28838 | Msa1411250:intron | 30.0% |
| ! | ATCTTGTTTGAAACTTAACC+TGG | - | tig0023748:29096-29115 | None:intergenic | 30.0% |
| ! | AAAGTATTAGGGATTGTTAC+AGG | - | tig0023748:29423-29442 | None:intergenic | 30.0% |
| CAATTTGTGCAACAAAAGTA+GGG | - | tig0023748:29691-29710 | None:intergenic | 30.0% | |
| !!! | TTCACCTTTGTTTTTGAGAT+AGG | + | tig0023748:29781-29800 | Msa1411250:intron | 30.0% |
| !!! | TCACCTTTGTTTTTGAGATA+GGG | + | tig0023748:29782-29801 | Msa1411250:intron | 30.0% |
| AGGAAATAAAAGAAAGACCT+GGG | - | tig0023748:30082-30101 | None:intergenic | 30.0% | |
| AAGGAAATAAAAGAAAGACC+TGG | - | tig0023748:30083-30102 | None:intergenic | 30.0% | |
| GAAAAAAAGAAGGGGAAAAA+AGG | - | tig0023748:30102-30121 | None:intergenic | 30.0% | |
| ! | TAGAAATGATCCAGGATTTT+TGG | + | tig0023748:30415-30434 | Msa1411250:intron | 30.0% |
| TTTGAATTTGCCAAAAATCC+TGG | - | tig0023748:30428-30447 | None:intergenic | 30.0% | |
| !! | CTTTAGGATTACAGATACAA+TGG | + | tig0023748:30475-30494 | Msa1411250:intron | 30.0% |
| ATTGTGAATAGGGAAATGAA+AGG | + | tig0023748:30564-30583 | Msa1411250:intron | 30.0% | |
| TTGTGAATAGGGAAATGAAA+GGG | + | tig0023748:30565-30584 | Msa1411250:intron | 30.0% | |
| !! | CAATATTCTTTCTAGCGTTT+TGG | + | tig0023748:30698-30717 | Msa1411250:intron | 30.0% |
| AGAAAAGAAACTGAAGAGAA+AGG | + | tig0023748:30798-30817 | Msa1411250:intron | 30.0% | |
| ! | TCTGATGAATTTTCAGATGT+TGG | + | tig0023748:30997-31016 | Msa1411250:intron | 30.0% |
| ATTTCAATTAATTGGAGAGG+AGG | + | tig0023748:31206-31225 | Msa1411250:intron | 30.0% | |
| TTTCAATTAATTGGAGAGGA+GGG | + | tig0023748:31207-31226 | Msa1411250:intron | 30.0% | |
| ! | AACTTAGAAGTACAGAGTTA+TGG | + | tig0023748:31265-31284 | Msa1411250:intron | 30.0% |
| TTTCTACATGACGAAATTCT+TGG | + | tig0023748:31418-31437 | Msa1411250:intron | 30.0% | |
| TTCTACATGACGAAATTCTT+GGG | + | tig0023748:31419-31438 | Msa1411250:intron | 30.0% | |
| GGAAATCAAGTAGAAATAAG+GGG | - | tig0023748:31504-31523 | None:intergenic | 30.0% | |
| TAATGAGGAATAGACTGAAA+AGG | + | tig0023748:31748-31767 | Msa1411250:intron | 30.0% | |
| TTCGAGTAATGTTATGAGTA+AGG | + | tig0023748:31808-31827 | Msa1411250:intron | 30.0% | |
| TATGAGTAAGGAAGAAATGA+TGG | + | tig0023748:31820-31839 | Msa1411250:intron | 30.0% | |
| ATGAGTAAGGAAGAAATGAT+GGG | + | tig0023748:31821-31840 | Msa1411250:intron | 30.0% | |
| ! | TTAATTGGAGGCACAAATTT+AGG | + | tig0023748:31920-31939 | Msa1411250:intron | 30.0% |
| ATACTTCATTAAGCCCTAAT+GGG | + | tig0023748:32229-32248 | Msa1411250:CDS | 30.0% | |
| ! | TTACAAGTTGTTTCCCATTA+GGG | - | tig0023748:32245-32264 | None:intergenic | 30.0% |
| ! | ATTACAAGTTGTTTCCCATT+AGG | - | tig0023748:32246-32265 | None:intergenic | 30.0% |
| CTTGGATTATTCATTTGCAT+CGG | + | tig0023748:32447-32466 | Msa1411250:CDS | 30.0% | |
| ATAATTAAAGAAAGGGAAGG+AGG | + | tig0023748:33020-33039 | Msa1411250:three_prime_UTR | 30.0% | |
| TAATTAAAGAAAGGGAAGGA+GGG | + | tig0023748:33021-33040 | Msa1411250:three_prime_UTR | 30.0% | |
| !!! | TGCTTATACATGTTTTTGGT+TGG | + | tig0023748:33058-33077 | Msa1411250:three_prime_UTR | 30.0% |
| ! | CGCAAATTTTGTTCGGATTT+AGG | + | tig0023748:27219-27238 | Msa1411250:intron | 35.0% |
| !!! | TTAGGTTTTTAGTTTCGAGG+AGG | + | tig0023748:27237-27256 | Msa1411250:intron | 35.0% |
| TGTTAGTATTATGCTGAGAG+TGG | + | tig0023748:27391-27410 | Msa1411250:intron | 35.0% | |
| ! | GATGATATGTATTTTCGTGG+CGG | + | tig0023748:27586-27605 | Msa1411250:CDS | 35.0% |
| ! | ATGATATGTATTTTCGTGGC+GGG | + | tig0023748:27587-27606 | Msa1411250:CDS | 35.0% |
| ! | CTCCGTTTGAAAAACTTTTG+AGG | + | tig0023748:27758-27777 | Msa1411250:intron | 35.0% |
| AAATTATGTCAATGGCCACA+TGG | - | tig0023748:27941-27960 | None:intergenic | 35.0% | |
| AGGATATTCAAGGTATACCT+TGG | + | tig0023748:28059-28078 | Msa1411250:CDS | 35.0% | |
| GGATATTCAAGGTATACCTT+GGG | + | tig0023748:28060-28079 | Msa1411250:CDS | 35.0% | |
| GAGTGCAAAGTAACACAAAA+AGG | + | tig0023748:28286-28305 | Msa1411250:CDS | 35.0% | |
| GTGCAAAGTAACACAAAAAG+GGG | + | tig0023748:28288-28307 | Msa1411250:CDS | 35.0% | |
| TGCAAAGTAACACAAAAAGG+GGG | + | tig0023748:28289-28308 | Msa1411250:CDS | 35.0% | |
| CACATTACTCAATTGTTCAC+TGG | + | tig0023748:28713-28732 | Msa1411250:CDS | 35.0% | |
| ! | TCTGAAGTTCTCAATGTATC+AGG | + | tig0023748:28757-28776 | Msa1411250:CDS | 35.0% |
| CTGAAGTTCTCAATGTATCA+GGG | + | tig0023748:28758-28777 | Msa1411250:CDS | 35.0% | |
| GCACAAATTATTACCTCACA+TGG | - | tig0023748:28793-28812 | None:intergenic | 35.0% | |
| TCAGACACAAATTAGTACAC+TGG | + | tig0023748:28909-28928 | Msa1411250:CDS | 35.0% | |
| !! | GTGATAACTTGTTGATTGCT+GGG | + | tig0023748:28938-28957 | Msa1411250:CDS | 35.0% |
| !! | TGATAACTTGTTGATTGCTG+GGG | + | tig0023748:28939-28958 | Msa1411250:CDS | 35.0% |
| !!! | CTGAAAGTACTGTTACGTTT+TGG | + | tig0023748:29017-29036 | Msa1411250:intron | 35.0% |
| ! | TTGTTTGAAACTTAACCTGG+AGG | - | tig0023748:29093-29112 | None:intergenic | 35.0% |
| GTGATTGAAGACTTACGAAT+TGG | - | tig0023748:29261-29280 | None:intergenic | 35.0% | |
| ! | CACATGAACTTTTTATGGAC+CGG | + | tig0023748:29392-29411 | Msa1411250:intron | 35.0% |
| ! | ACATGAACTTTTTATGGACC+GGG | + | tig0023748:29393-29412 | Msa1411250:intron | 35.0% |
| TATTAGGGATTGTTACAGGT+GGG | - | tig0023748:29419-29438 | None:intergenic | 35.0% | |
| GCAAAAAGAAAGATGCAATG+AGG | - | tig0023748:29503-29522 | None:intergenic | 35.0% | |
| TTAGTCGTTTGTGATTGTGT+TGG | - | tig0023748:29537-29556 | None:intergenic | 35.0% | |
| CCAATTTGTGCAACAAAAGT+AGG | - | tig0023748:29692-29711 | None:intergenic | 35.0% | |
| !! | CCTACTTTTGTTGCACAAAT+TGG | + | tig0023748:29689-29708 | Msa1411250:intron | 35.0% |
| CAACCCTATCTCAAAAACAA+AGG | - | tig0023748:29788-29807 | None:intergenic | 35.0% | |
| ACAATCAATTCATCTGTCAG+TGG | + | tig0023748:30199-30218 | Msa1411250:intron | 35.0% | |
| TTCATGGCTTCAAACAATGA+TGG | + | tig0023748:30232-30251 | Msa1411250:CDS | 35.0% | |
| !! | AAACAATGATGGTGGAATCA+GGG | + | tig0023748:30243-30262 | Msa1411250:CDS | 35.0% |
| GTAGAATGGCTTACATTTAC+TGG | - | tig0023748:30319-30338 | None:intergenic | 35.0% | |
| GAAATGTAAGCCATTCTACT+TGG | + | tig0023748:30355-30374 | Msa1411250:intron | 35.0% | |
| !! | AGATACAATGGATTGAGAAG+AGG | + | tig0023748:30487-30506 | Msa1411250:intron | 35.0% |
| !! | GATACAATGGATTGAGAAGA+GGG | + | tig0023748:30488-30507 | Msa1411250:intron | 35.0% |
| TTGAGAAGAGGGAAAGTAAA+TGG | + | tig0023748:30499-30518 | Msa1411250:intron | 35.0% | |
| ! | AGAGGGAAAGTAAATGGATT+TGG | + | tig0023748:30505-30524 | Msa1411250:intron | 35.0% |
| CATCATGGGTATGTTTAATG+AGG | + | tig0023748:31733-31752 | Msa1411250:intron | 35.0% | |
| GTGGGATAAAAGATTTGAGA+TGG | + | tig0023748:31865-31884 | Msa1411250:intron | 35.0% | |
| AATTTGCATACACAATCCTC+TGG | - | tig0023748:31967-31986 | None:intergenic | 35.0% | |
| TAAGAAGCTCTCCTATACAA+AGG | - | tig0023748:32058-32077 | None:intergenic | 35.0% | |
| CATACTTCATTAAGCCCTAA+TGG | + | tig0023748:32228-32247 | Msa1411250:CDS | 35.0% | |
| GGGAAACAACTTGTAATTGT+TGG | + | tig0023748:32249-32268 | Msa1411250:CDS | 35.0% | |
| ATTAGAATGAGTCAAGTGTG+TGG | + | tig0023748:32352-32371 | Msa1411250:intron | 35.0% | |
| TTAGAATGAGTCAAGTGTGT+GGG | + | tig0023748:32353-32372 | Msa1411250:intron | 35.0% | |
| ! | ATTATTCATTTGCATCGGCA+TGG | + | tig0023748:32452-32471 | Msa1411250:CDS | 35.0% |
| !! | ATGGTTTCATTTTTGCCACT+GGG | + | tig0023748:32482-32501 | Msa1411250:CDS | 35.0% |
| ! | AAATGCGGCATGTTTTATCT+TGG | - | tig0023748:32510-32529 | None:intergenic | 35.0% |
| AAGATAAAACATGCCGCATT+TGG | + | tig0023748:32509-32528 | Msa1411250:CDS | 35.0% | |
| AGATAAAACATGCCGCATTT+GGG | + | tig0023748:32510-32529 | Msa1411250:CDS | 35.0% | |
| ! | AAAGTCTGTTGCTGTTCTTA+AGG | + | tig0023748:32549-32568 | Msa1411250:CDS | 35.0% |
| ! | AAGTCTGTTGCTGTTCTTAA+GGG | + | tig0023748:32550-32569 | Msa1411250:CDS | 35.0% |
| TGCAAAGCAAGGATTTGAAA+AGG | + | tig0023748:32663-32682 | Msa1411250:CDS | 35.0% | |
| !!! | GAGCAAGAGATCGATTTTTT+TGG | + | tig0023748:32685-32704 | Msa1411250:CDS | 35.0% |
| !!! | AGAGATCGATTTTTTTGGAG+AGG | + | tig0023748:32690-32709 | Msa1411250:CDS | 35.0% |
| !!! | AGTCGCTTTTTATTGGTGTA+TGG | + | tig0023748:32743-32762 | Msa1411250:CDS | 35.0% |
| !!! | GTCGCTTTTTATTGGTGTAT+GGG | + | tig0023748:32744-32763 | Msa1411250:CDS | 35.0% |
| TTTCTTCTTTCTACTTCCCT+TGG | - | tig0023748:32920-32939 | None:intergenic | 35.0% | |
| AAGGGAAGTAGAAAGAAGAA+AGG | + | tig0023748:32919-32938 | Msa1411250:three_prime_UTR | 35.0% | |
| ATAGTGTAAAACATGGCTTG+AGG | + | tig0023748:32963-32982 | Msa1411250:three_prime_UTR | 35.0% | |
| GAATTGCGATGAAGCAGATT+TGG | - | tig0023748:26945-26964 | None:intergenic | 40.0% | |
| AGAACATGGCTCAATACCAT+GGG | + | tig0023748:27515-27534 | Msa1411250:exon | 40.0% | |
| TCAATACCATGGGGATGAAA+TGG | + | tig0023748:27525-27544 | Msa1411250:CDS | 40.0% | |
| ! | AGATGATAATGAGATGGCTG+AGG | + | tig0023748:27558-27577 | Msa1411250:CDS | 40.0% |
| TGGTGAATCTGATACTGATG+AGG | + | tig0023748:27618-27637 | Msa1411250:CDS | 40.0% | |
| CGACGATGAATATGATCCTT+TGG | + | tig0023748:27645-27664 | Msa1411250:CDS | 40.0% | |
| !! | TCACGGGTTGACATTTGTTT+TGG | + | tig0023748:27848-27867 | Msa1411250:intron | 40.0% |
| !!! | TCCTTCTGCTTGCACTTTTT+TGG | + | tig0023748:27962-27981 | Msa1411250:intron | 40.0% |
| !!! | CCTTCTGCTTGCACTTTTTT+GGG | + | tig0023748:27963-27982 | Msa1411250:intron | 40.0% |
| !!! | CTTCTGCTTGCACTTTTTTG+GGG | + | tig0023748:27964-27983 | Msa1411250:intron | 40.0% |
| GGCTATGGATTCCTTATTAC+AGG | + | tig0023748:27991-28010 | Msa1411250:intron | 40.0% | |
| CTGCAGTGGTATCTGTTATT+CGG | - | tig0023748:28021-28040 | None:intergenic | 40.0% | |
| TTCAAGGTATACCTTGGGAT+AGG | + | tig0023748:28065-28084 | Msa1411250:CDS | 40.0% | |
| ! | TTCTTTTCTCTCTGATCCAC+AGG | + | tig0023748:28264-28283 | Msa1411250:intron | 40.0% |
| GGGGATTGTATTACGATTTC+TGG | + | tig0023748:28308-28327 | Msa1411250:CDS | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | + | tig0023748:28416-28435 | Msa1411250:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | + | tig0023748:28416-28435 | Msa1411250:intron | 40.0% | |
| AACAACTTATCAGTCATCGC+AGG | - | tig0023748:28529-28548 | None:intergenic | 40.0% | |
| AAACTAAGTTTCTCAGCTGC+AGG | - | tig0023748:28660-28679 | None:intergenic | 40.0% | |
| TGCAGCTGAGAAACTTAGTT+TGG | + | tig0023748:28659-28678 | Msa1411250:intron | 40.0% | |
| ! | GTGTTGCTAACAGAAACATC+CGG | + | tig0023748:28864-28883 | Msa1411250:intron | 40.0% |
| TGTTGCTAACAGAAACATCC+GGG | + | tig0023748:28865-28884 | Msa1411250:intron | 40.0% | |
| !! | CGTGATAACTTGTTGATTGC+TGG | + | tig0023748:28937-28956 | Msa1411250:CDS | 40.0% |
| !! | GATAACTTGTTGATTGCTGG+GGG | + | tig0023748:28940-28959 | Msa1411250:CDS | 40.0% |
| TCAAGGAGAGCTTATTTGCA+AGG | + | tig0023748:28966-28985 | Msa1411250:CDS | 40.0% | |
| TAAAAACTGATGAGACCTCC+AGG | + | tig0023748:29075-29094 | Msa1411250:intron | 40.0% | |
| GTATTAGGGATTGTTACAGG+TGG | - | tig0023748:29420-29439 | None:intergenic | 40.0% | |
| AATGAGGAACATTTGCTCAC+TGG | - | tig0023748:29487-29506 | None:intergenic | 40.0% | |
| GATTGTGTTGGATGAAGAAG+CGG | - | tig0023748:29525-29544 | None:intergenic | 40.0% | |
| TTGTTCTCGAACTACGTATG+AGG | + | tig0023748:30018-30037 | Msa1411250:CDS | 40.0% | |
| TTGAGATTTATGAGCATCCC+AGG | + | tig0023748:30062-30081 | Msa1411250:CDS | 40.0% | |
| AGGGTCTTAAATTGTTGGCA+TGG | + | tig0023748:30131-30150 | Msa1411250:intron | 40.0% | |
| TAGTATGCAGTCATCCTTGA+GGG | - | tig0023748:30179-30198 | None:intergenic | 40.0% | |
| TTAGTATGCAGTCATCCTTG+AGG | - | tig0023748:30180-30199 | None:intergenic | 40.0% | |
| ATGGCTTCAAACAATGATGG+TGG | + | tig0023748:30235-30254 | Msa1411250:CDS | 40.0% | |
| !! | CAAACAATGATGGTGGAATC+AGG | + | tig0023748:30242-30261 | Msa1411250:CDS | 40.0% |
| TGGAATCAGGGACTTTGATA+TGG | + | tig0023748:30255-30274 | Msa1411250:CDS | 40.0% | |
| CCACAGAAAGTCAAGTAGAA+TGG | - | tig0023748:30333-30352 | None:intergenic | 40.0% | |
| CCATTCTACTTGACTTTCTG+TGG | + | tig0023748:30330-30349 | Msa1411250:intron | 40.0% | |
| TAGCTAGTTCACAGTGCTTT+AGG | + | tig0023748:30459-30478 | Msa1411250:intron | 40.0% | |
| ! | TGGCTAGTTCACAATGCTTT+AGG | + | tig0023748:30525-30544 | Msa1411250:intron | 40.0% |
| !! | TACTCCTTTAAGGCACTAAC+TGG | + | tig0023748:31076-31095 | Msa1411250:intron | 40.0% |
| AACAGATTCCAGCTACAAAC+TGG | - | tig0023748:31141-31160 | None:intergenic | 40.0% | |
| ! | GTCAGTACGTGATTTTTACG+TGG | - | tig0023748:31300-31319 | None:intergenic | 40.0% |
| ACGAAATTCTTGGGCAAGTT+TGG | + | tig0023748:31428-31447 | Msa1411250:intron | 40.0% | |
| GACGCAAACGTGAAAAATGA+AGG | - | tig0023748:31677-31696 | None:intergenic | 40.0% | |
| AAATGCAAACAGTGGCATCA+TGG | + | tig0023748:31718-31737 | Msa1411250:intron | 40.0% | |
| AATGCAAACAGTGGCATCAT+GGG | + | tig0023748:31719-31738 | Msa1411250:intron | 40.0% | |
| GGTCATACACATGAATGGTT+TGG | - | tig0023748:31780-31799 | None:intergenic | 40.0% | |
| TCTCTGGTCATACACATGAA+TGG | - | tig0023748:31785-31804 | None:intergenic | 40.0% | |
| AACATTACTCGAAAGCTCTC+TGG | - | tig0023748:31801-31820 | None:intergenic | 40.0% | |
| ! | AGTAAGGAAGAAATGATGGG+AGG | + | tig0023748:31824-31843 | Msa1411250:intron | 40.0% |
| ! | GTAAGGAAGAAATGATGGGA+GGG | + | tig0023748:31825-31844 | Msa1411250:intron | 40.0% |
| TAGACTATTGCACCTCTATG+CGG | + | tig0023748:32421-32440 | Msa1411250:intron | 40.0% | |
| GTGGCAAAAATGAAACCATC+AGG | - | tig0023748:32481-32500 | None:intergenic | 40.0% | |
| !! | GATGGTTTCATTTTTGCCAC+TGG | + | tig0023748:32481-32500 | Msa1411250:CDS | 40.0% |
| ! | TGTTTTATCTTGGTTCCCAG+TGG | - | tig0023748:32500-32519 | None:intergenic | 40.0% |
| ! | AGTCTGTTGCTGTTCTTAAG+GGG | + | tig0023748:32551-32570 | Msa1411250:CDS | 40.0% |
| TCAATACGCTTCACATCTGA+TGG | + | tig0023748:32592-32611 | Msa1411250:CDS | 40.0% | |
| CAATACGCTTCACATCTGAT+GGG | + | tig0023748:32593-32612 | Msa1411250:CDS | 40.0% | |
| CATGTCTATGATGCAAAGCA+AGG | + | tig0023748:32652-32671 | Msa1411250:CDS | 40.0% | |
| !!! | GATTTTTTTGGAGAGGTCTC+AGG | + | tig0023748:32697-32716 | Msa1411250:CDS | 40.0% |
| TAAAAAGCGACTCTGTGTCA+GGG | - | tig0023748:32735-32754 | None:intergenic | 40.0% | |
| ATAAAAAGCGACTCTGTGTC+AGG | - | tig0023748:32736-32755 | None:intergenic | 40.0% | |
| !!! | GACACAGAGTCGCTTTTTAT+TGG | + | tig0023748:32736-32755 | Msa1411250:CDS | 40.0% |
| GAACTGAAGAAGACTTCCAT+AGG | - | tig0023748:32776-32795 | None:intergenic | 40.0% | |
| AGAAGAAAGGTGAACTGACA+TGG | + | tig0023748:32932-32951 | Msa1411250:three_prime_UTR | 40.0% | |
| AAAACATGGCTTGAGGATGT+TGG | + | tig0023748:32970-32989 | Msa1411250:three_prime_UTR | 40.0% | |
| AAACATGGCTTGAGGATGTT+GGG | + | tig0023748:32971-32990 | Msa1411250:three_prime_UTR | 40.0% | |
| ! | TGTTCTGGATCTCAGGGATA+AGG | - | tig0023748:26991-27010 | None:intergenic | 45.0% |
| ! | AGGGTTTGTTCTGGATCTCA+GGG | - | tig0023748:26997-27016 | None:intergenic | 45.0% |
| ! | TAGGGTTTGTTCTGGATCTC+AGG | - | tig0023748:26998-27017 | None:intergenic | 45.0% |
| ! | CTTGAGGTTAGGGTTTGTTC+TGG | - | tig0023748:27006-27025 | None:intergenic | 45.0% |
| CAGAACAAACCCTAACCTCA+AGG | + | tig0023748:27004-27023 | Msa1411250:five_prime_UTR | 45.0% | |
| TGGTGACCTGATTCTGTGTT+GGG | - | tig0023748:27049-27068 | None:intergenic | 45.0% | |
| ATGGTGACCTGATTCTGTGT+TGG | - | tig0023748:27050-27069 | None:intergenic | 45.0% | |
| !!! | GGTTTTTAGTTTCGAGGAGG+TGG | + | tig0023748:27240-27259 | Msa1411250:intron | 45.0% |
| ! | TGGTATTGAGCCATGTTCTG+CGG | - | tig0023748:27514-27533 | None:intergenic | 45.0% |
| CAGAACATGGCTCAATACCA+TGG | + | tig0023748:27514-27533 | Msa1411250:exon | 45.0% | |
| GAACATGGCTCAATACCATG+GGG | + | tig0023748:27516-27535 | Msa1411250:exon | 45.0% | |
| CATACTCCATTTCATCCCCA+TGG | - | tig0023748:27534-27553 | None:intergenic | 45.0% | |
| AGTGTTAAACGCGTGCATCA+CGG | + | tig0023748:27831-27850 | Msa1411250:intron | 45.0% | |
| ! | CCCAAAAAAGTGCAAGCAGA+AGG | - | tig0023748:27966-27985 | None:intergenic | 45.0% |
| !!! | TGCTTGCACTTTTTTGGGGT+GGG | + | tig0023748:27968-27987 | Msa1411250:intron | 45.0% |
| AGGAGGGGAAAGGATATTCA+AGG | + | tig0023748:28049-28068 | Msa1411250:CDS | 45.0% | |
| ATCTCGTCTTGCTTAGTGCT+TGG | + | tig0023748:28189-28208 | Msa1411250:intron | 45.0% | |
| ! | GCTTGGAGGCATATGAGTAA+TGG | + | tig0023748:28206-28225 | Msa1411250:intron | 45.0% |
| !! | TGTGTTACTTTGCACTCCTG+TGG | - | tig0023748:28283-28302 | None:intergenic | 45.0% |
| TCTGAGTAAAACCCTCCAAG+AGG | - | tig0023748:28894-28913 | None:intergenic | 45.0% | |
| ! | TTGATTGCTGGGGGTTTTCA+AGG | + | tig0023748:28949-28968 | Msa1411250:CDS | 45.0% |
| AACGACTAAGTGAAGATCCG+CGG | + | tig0023748:29548-29567 | Msa1411250:intron | 45.0% | |
| AGTCAATCTTCGCTACACCA+TGG | - | tig0023748:29583-29602 | None:intergenic | 45.0% | |
| TCGAGAACAAAAGCTAACCC+CGG | - | tig0023748:30008-30027 | None:intergenic | 45.0% | |
| ATCACTAGTCACAACCCTCA+AGG | + | tig0023748:30162-30181 | Msa1411250:intron | 45.0% | |
| CAGTGGAGCTGTACATTTCA+TGG | + | tig0023748:30216-30235 | Msa1411250:intron | 45.0% | |
| TGGCTTACATTTACTGGCCA+AGG | - | tig0023748:30313-30332 | None:intergenic | 45.0% | |
| CCACAGAAAGCCAAGTAGAA+TGG | - | tig0023748:30368-30387 | None:intergenic | 45.0% | |
| ! | CCATTCTACTTGGCTTTCTG+TGG | + | tig0023748:30365-30384 | Msa1411250:intron | 45.0% |
| !!! | GCGTTTTGGCTGTTGCATTA+TGG | + | tig0023748:30712-30731 | Msa1411250:intron | 45.0% |
| GTAGCCAGTTAGTGCCTTAA+AGG | - | tig0023748:31083-31102 | None:intergenic | 45.0% | |
| ACGAAAAGTTATCCCCTGAC+AGG | - | tig0023748:31105-31124 | None:intergenic | 45.0% | |
| CCAGCTACAAACTGGTGAAA+AGG | - | tig0023748:31133-31152 | None:intergenic | 45.0% | |
| ! | CCTTTTCACCAGTTTGTAGC+TGG | + | tig0023748:31130-31149 | Msa1411250:intron | 45.0% |
| AATTGGAGAGGAGGGAAAAG+TGG | + | tig0023748:31215-31234 | Msa1411250:intron | 45.0% | |
| ATTGGAGAGGAGGGAAAAGT+GGG | + | tig0023748:31216-31235 | Msa1411250:intron | 45.0% | |
| GAAATTGAGAATCCCTCAGC+TGG | + | tig0023748:31323-31342 | Msa1411250:intron | 45.0% | |
| TGAAAAACGACACCAGCTGA+GGG | - | tig0023748:31338-31357 | None:intergenic | 45.0% | |
| ATGAAAAACGACACCAGCTG+AGG | - | tig0023748:31339-31358 | None:intergenic | 45.0% | |
| GTGCAGTAGAATGTACAGGT+GGG | + | tig0023748:31847-31866 | Msa1411250:intron | 45.0% | |
| ATTGTTGGAGACAACCCAGA+TGG | + | tig0023748:32264-32283 | Msa1411250:CDS | 45.0% | |
| AGACAACCCAGATGGTTTAC+TGG | + | tig0023748:32272-32291 | Msa1411250:CDS | 45.0% | |
| CATCCACCAGTAAACCATCT+GGG | - | tig0023748:32281-32300 | None:intergenic | 45.0% | |
| ! | TTACTGGTGGATGCTCAAAC+TGG | + | tig0023748:32288-32307 | Msa1411250:CDS | 45.0% |
| TAATCCAAGTGTCCGCATAG+AGG | - | tig0023748:32436-32455 | None:intergenic | 45.0% | |
| GATTCCGAACATCCCAAATG+CGG | - | tig0023748:32525-32544 | None:intergenic | 45.0% | |
| GTATTGAGCGTATAGCTCCA+AGG | - | tig0023748:32579-32598 | None:intergenic | 45.0% | |
| TAGACATGCACAAAGTCAGC+TGG | - | tig0023748:32640-32659 | None:intergenic | 45.0% | |
| AACATGGCTTGAGGATGTTG+GGG | + | tig0023748:32972-32991 | Msa1411250:three_prime_UTR | 45.0% | |
| !! | ATAAAAAATAAAATAAAAGA+GGG | - | tig0023748:30671-30690 | None:intergenic | 5.0% |
| !! | AATAAAAAATAAAATAAAAG+AGG | - | tig0023748:30672-30691 | None:intergenic | 5.0% |
| !! | TTAAATAATAATTAAAGAAA+GGG | + | tig0023748:33013-33032 | Msa1411250:three_prime_UTR | 5.0% |
| ! | TCTGTGTTGGGGATTGGTGA+AGG | - | tig0023748:27037-27056 | None:intergenic | 50.0% |
| CCTGATTCTGTGTTGGGGAT+TGG | - | tig0023748:27043-27062 | None:intergenic | 50.0% | |
| CCAATCCCCAACACAGAATC+AGG | + | tig0023748:27040-27059 | Msa1411250:five_prime_UTR | 50.0% | |
| GGTGACCTGATTCTGTGTTG+GGG | - | tig0023748:27048-27067 | None:intergenic | 50.0% | |
| GTGAACTCTACCGCAGAACA+TGG | + | tig0023748:27501-27520 | Msa1411250:exon | 50.0% | |
| GTGTTAAACGCGTGCATCAC+GGG | + | tig0023748:27832-27851 | Msa1411250:intron | 50.0% | |
| !!! | CTGCTTGCACTTTTTTGGGG+TGG | + | tig0023748:27967-27986 | Msa1411250:intron | 50.0% |
| !!! | GCTTGCACTTTTTTGGGGTG+GGG | + | tig0023748:27969-27988 | Msa1411250:intron | 50.0% |
| !!! | CTTGCACTTTTTTGGGGTGG+GGG | + | tig0023748:27970-27989 | Msa1411250:intron | 50.0% |
| ATACCACTGCAGCTGAAGCT+AGG | + | tig0023748:28029-28048 | Msa1411250:CDS | 50.0% | |
| GTAATGCTCAGCCTATCCCA+AGG | - | tig0023748:28079-28098 | None:intergenic | 50.0% | |
| TCTGACAGTTCCCCAGATTG+TGG | - | tig0023748:28157-28176 | None:intergenic | 50.0% | |
| ATCTGGGGAACTGTCAGAGA+AGG | + | tig0023748:28159-28178 | Msa1411250:CDS | 50.0% | |
| TCGTCTTGCTTAGTGCTTGG+AGG | + | tig0023748:28192-28211 | Msa1411250:intron | 50.0% | |
| GAGGAACATTTGCTCACTGG+CGG | - | tig0023748:29484-29503 | None:intergenic | 50.0% | |
| TTGCAGTACTTAGACCGACC+CGG | + | tig0023748:29986-30005 | Msa1411250:intron | 50.0% | |
| AACAAAAGCTAACCCCGGGT+CGG | - | tig0023748:30003-30022 | None:intergenic | 50.0% | |
| CGAGAACAAAAGCTAACCCC+GGG | - | tig0023748:30007-30026 | None:intergenic | 50.0% | |
| ! | CGAAGCACTCATGCTTTCCT+TGG | + | tig0023748:30293-30312 | Msa1411250:CDS | 50.0% |
| CACTAACTGGCTACCTGTCA+GGG | + | tig0023748:31089-31108 | Msa1411250:intron | 50.0% | |
| ACTAACTGGCTACCTGTCAG+GGG | + | tig0023748:31090-31109 | Msa1411250:intron | 50.0% | |
| ! | GAGGGTGCAGTAGAATGTAC+AGG | + | tig0023748:31843-31862 | Msa1411250:intron | 50.0% |
| GGTGCAGTAGAATGTACAGG+TGG | + | tig0023748:31846-31865 | Msa1411250:intron | 50.0% | |
| GTTACGGTAGCATAGACCAG+AGG | + | tig0023748:31948-31967 | Msa1411250:intron | 50.0% | |
| CAACCCAGATGGTTTACTGG+TGG | + | tig0023748:32275-32294 | Msa1411250:CDS | 50.0% | |
| GCATCCACCAGTAAACCATC+TGG | - | tig0023748:32282-32301 | None:intergenic | 50.0% | |
| GGTGGATGCTCAAACTGGAA+AGG | + | tig0023748:32293-32312 | Msa1411250:CDS | 50.0% | |
| ! | CATGCCGCATTTGGGATGTT+CGG | + | tig0023748:32518-32537 | Msa1411250:CDS | 50.0% |
| GCTGTTCTTAAGGGGAACCT+TGG | + | tig0023748:32559-32578 | Msa1411250:CDS | 50.0% | |
| TACGCTTCACATCTGATGGG+CGG | + | tig0023748:32596-32615 | Msa1411250:CDS | 50.0% | |
| ! | CACATCTGATGGGCGGTATA+TGG | + | tig0023748:32603-32622 | Msa1411250:CDS | 50.0% |
| ! | TGATGGGCGGTATATGGCAA+TGG | + | tig0023748:32609-32628 | Msa1411250:CDS | 50.0% |
| GGTGTATGGGATCGTACCTA+TGG | + | tig0023748:32757-32776 | Msa1411250:CDS | 50.0% | |
| TGTTGAACGCGCGTGATGCA+CGG | + | tig0023748:27877-27896 | Msa1411250:intron | 55.0% | |
| !!! | CTTTTTTGGGGTGGGGGCTA+TGG | + | tig0023748:27976-27995 | Msa1411250:intron | 55.0% |
| CACTGCAGCTGAAGCTAGGA+GGG | + | tig0023748:28033-28052 | Msa1411250:CDS | 55.0% | |
| ACTGCAGCTGAAGCTAGGAG+GGG | + | tig0023748:28034-28053 | Msa1411250:CDS | 55.0% | |
| AGCTGAAGCTAGGAGGGGAA+AGG | + | tig0023748:28039-28058 | Msa1411250:CDS | 55.0% | |
| AGGGCATGTTGCTCCATGTG+AGG | + | tig0023748:28777-28796 | Msa1411250:CDS | 55.0% | |
| GAAACATCCGGGAAGCCTCT+TGG | + | tig0023748:28876-28895 | Msa1411250:intron | 55.0% | |
| AAACCCTCCAAGAGGCTTCC+CGG | - | tig0023748:28886-28905 | None:intergenic | 55.0% | |
| GAACATTTGCTCACTGGCGG+TGG | - | tig0023748:29481-29500 | None:intergenic | 55.0% | |
| TGCAGTACTTAGACCGACCC+GGG | + | tig0023748:29987-30006 | Msa1411250:intron | 55.0% | |
| GCACTAACTGGCTACCTGTC+AGG | + | tig0023748:31088-31107 | Msa1411250:intron | 55.0% | |
| TGCACCTCTATGCGGACACT+TGG | + | tig0023748:32429-32448 | Msa1411250:CDS | 55.0% | |
| GGTGCAGCGCCTTGAGGTTA+GGG | - | tig0023748:27016-27035 | None:intergenic | 60.0% | |
| AGGTGCAGCGCCTTGAGGTT+AGG | - | tig0023748:27017-27036 | None:intergenic | 60.0% | |
| GTTGAACGCGCGTGATGCAC+GGG | + | tig0023748:27878-27897 | Msa1411250:intron | 60.0% | |
| CCTCCTAGCTTCAGCTGCAG+TGG | - | tig0023748:28035-28054 | None:intergenic | 60.0% | |
| CCACTGCAGCTGAAGCTAGG+AGG | + | tig0023748:28032-28051 | Msa1411250:CDS | 60.0% | |
| ACATCCGGGAAGCCTCTTGG+AGG | + | tig0023748:28879-28898 | Msa1411250:CDS | 60.0% | |
| CATCCGGGAAGCCTCTTGGA+GGG | + | tig0023748:28880-28899 | Msa1411250:CDS | 60.0% | |
| GGGATTGTTACAGGTGGGCC+CGG | - | tig0023748:29414-29433 | None:intergenic | 60.0% | |
| TCACTGGCGGTGGCATGACT+TGG | - | tig0023748:29471-29490 | None:intergenic | 60.0% | |
| CTAAGTGAAGATCCGCGGCG+TGG | + | tig0023748:29553-29572 | Msa1411250:intron | 60.0% | |
| GCAGTACTTAGACCGACCCG+GGG | + | tig0023748:29988-30007 | Msa1411250:intron | 60.0% | |
| ! | GCATCGGCATGGCATCCTGA+TGG | + | tig0023748:32463-32482 | Msa1411250:CDS | 60.0% |
| ! | GGTGAAGGTGCAGCGCCTTG+AGG | - | tig0023748:27022-27041 | None:intergenic | 65.0% |
| !! | TTTCGTGGCGGGAGAGCGCT+TGG | + | tig0023748:27598-27617 | Msa1411250:CDS | 65.0% |
| ATCCGCGGCGTGGCTATCCA+TGG | + | tig0023748:29563-29582 | Msa1411250:intron | 65.0% | |
| CACCATGGATAGCCACGCCG+CGG | - | tig0023748:29568-29587 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023748 | gene | 26928 | 33130 | 26928 | ID=Msa1411250;Name=Msa1411250 |
| tig0023748 | mRNA | 26928 | 33130 | 26928 | ID=Msa1411250-mRNA-1;Parent=Msa1411250;Name=Msa1411250-mRNA-1;_AED=0.12;_eAED=0.12;_QI=163|1|1|1|0.88|0.8|10|296|447 |
| tig0023748 | exon | 26928 | 27061 | 26928 | ID=Msa1411250-mRNA-1:exon:19964;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 27491 | 27666 | 27491 | ID=Msa1411250-mRNA-1:exon:19965;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 28013 | 28180 | 28013 | ID=Msa1411250-mRNA-1:exon:19966;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 28286 | 28372 | 28286 | ID=Msa1411250-mRNA-1:exon:19967;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 28664 | 28798 | 28664 | ID=Msa1411250-mRNA-1:exon:19968;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 28877 | 28987 | 28877 | ID=Msa1411250-mRNA-1:exon:19969;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 29992 | 30083 | 29992 | ID=Msa1411250-mRNA-1:exon:19970;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 30219 | 30324 | 30219 | ID=Msa1411250-mRNA-1:exon:19971;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 32228 | 32314 | 32228 | ID=Msa1411250-mRNA-1:exon:19972;Parent=Msa1411250-mRNA-1 |
| tig0023748 | exon | 32424 | 33130 | 32424 | ID=Msa1411250-mRNA-1:exon:19973;Parent=Msa1411250-mRNA-1 |
| tig0023748 | five_prime_UTR | 26928 | 27061 | 26928 | ID=Msa1411250-mRNA-1:five_prime_utr;Parent=Msa1411250-mRNA-1 |
| tig0023748 | five_prime_UTR | 27491 | 27519 | 27491 | ID=Msa1411250-mRNA-1:five_prime_utr;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 27520 | 27666 | 27520 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 28013 | 28180 | 28013 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 28286 | 28372 | 28286 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 28664 | 28798 | 28664 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 28877 | 28987 | 28877 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 29992 | 30083 | 29992 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 30219 | 30324 | 30219 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 32228 | 32314 | 32228 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | CDS | 32424 | 32834 | 32424 | ID=Msa1411250-mRNA-1:cds;Parent=Msa1411250-mRNA-1 |
| tig0023748 | three_prime_UTR | 32835 | 33130 | 32835 | ID=Msa1411250-mRNA-1:three_prime_utr;Parent=Msa1411250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
