Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445910 | sp|Q9SDN0|DNJ20_ARATH | 51.010 | 198 | 84 | 5 | 1 | 190 | 1 | 193 | 5.62e-59 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445910 | A0A072TT90 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 6.11e-139 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa1445910 | 0.808524 | 2.969640e-50 | -8.615850e-47 |
| Msa0002110 | Msa1445910 | 0.837025 | 6.629593e-57 | -8.615850e-47 |
| Msa0011450 | Msa1445910 | 0.804595 | 2.003057e-49 | -8.615850e-47 |
| Msa0033220 | Msa1445910 | -0.803785 | 2.953096e-49 | -8.615850e-47 |
| Msa0065670 | Msa1445910 | 0.814464 | 1.520078e-51 | -8.615850e-47 |
| Msa0066890 | Msa1445910 | 0.806627 | 7.505044e-50 | -8.615850e-47 |
| Msa0095810 | Msa1445910 | 0.834807 | 2.420620e-56 | -8.615850e-47 |
| Msa0111110 | Msa1445910 | 0.834822 | 2.399509e-56 | -8.615850e-47 |
| Msa1348170 | Msa1445910 | 0.804852 | 1.770315e-49 | -8.615850e-47 |
| Msa1356600 | Msa1445910 | 0.827216 | 1.767976e-54 | -8.615850e-47 |
| Msa1375610 | Msa1445910 | 0.807806 | 4.223070e-50 | -8.615850e-47 |
| Msa1376550 | Msa1445910 | 0.806866 | 6.680369e-50 | -8.615850e-47 |
| Msa1428230 | Msa1445910 | 0.800421 | 1.452462e-48 | -8.615850e-47 |
| Msa1444790 | Msa1445910 | -0.807264 | 5.503306e-50 | -8.615850e-47 |
| Msa0649170 | Msa1445910 | -0.808169 | 3.534718e-50 | -8.615850e-47 |
| Msa0656940 | Msa1445910 | 0.827827 | 1.261551e-54 | -8.615850e-47 |
| Msa0734250 | Msa1445910 | -0.808790 | 2.604708e-50 | -8.615850e-47 |
| Msa0769300 | Msa1445910 | -0.809142 | 2.189609e-50 | -8.615850e-47 |
| Msa0795750 | Msa1445910 | -0.827331 | 1.659660e-54 | -8.615850e-47 |
| Msa0138990 | Msa1445910 | 0.814600 | 1.418303e-51 | -8.615850e-47 |
| Msa0140770 | Msa1445910 | 0.830412 | 2.980688e-55 | -8.615850e-47 |
| Msa0154890 | Msa1445910 | 0.815997 | 6.938723e-52 | -8.615850e-47 |
| Msa0175750 | Msa1445910 | -0.804374 | 2.227051e-49 | -8.615850e-47 |
| Msa0189560 | Msa1445910 | 0.848424 | 6.182617e-60 | -8.615850e-47 |
| Msa0220400 | Msa1445910 | 0.800562 | 1.359441e-48 | -8.615850e-47 |
| Msa1225860 | Msa1445910 | 0.805262 | 1.453533e-49 | -8.615850e-47 |
| Msa1342960 | Msa1445910 | 0.813200 | 2.887180e-51 | -8.615850e-47 |
| Msa0365210 | Msa1445910 | -0.846305 | 2.361728e-59 | -8.615850e-47 |
| Msa0370580 | Msa1445910 | 0.800503 | 1.397738e-48 | -8.615850e-47 |
| Msa0375330 | Msa1445910 | 0.820008 | 8.603468e-53 | -8.615850e-47 |
| Msa0380400 | Msa1445910 | 0.805466 | 1.317249e-49 | -8.615850e-47 |
| Msa0385930 | Msa1445910 | 0.832128 | 1.127810e-55 | -8.615850e-47 |
| Msa0476170 | Msa1445910 | 0.819161 | 1.343116e-52 | -8.615850e-47 |
| Msa0479760 | Msa1445910 | 0.826230 | 3.040150e-54 | -8.615850e-47 |
| Msa1071180 | Msa1445910 | 0.817162 | 3.804321e-52 | -8.615850e-47 |
| Msa1085610 | Msa1445910 | 0.812706 | 3.704065e-51 | -8.615850e-47 |
| Msa1105460 | Msa1445910 | -0.803408 | 3.536936e-49 | -8.615850e-47 |
| Msa0258390 | Msa1445910 | -0.826310 | 2.910772e-54 | -8.615850e-47 |
| Msa0297610 | Msa1445910 | -0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0299530 | Msa1445910 | 0.809668 | 1.688447e-50 | -8.615850e-47 |
| Msa0320500 | Msa1445910 | -0.817090 | 3.948532e-52 | -8.615850e-47 |
| Msa0326170 | Msa1445910 | 0.801458 | 8.919614e-49 | -8.615850e-47 |
| Msa1130060 | Msa1445910 | -0.817479 | 3.227753e-52 | -8.615850e-47 |
| Msa1143370 | Msa1445910 | 0.988855 | 1.100534e-175 | -8.615850e-47 |
| Msa1150960 | Msa1445910 | -0.809990 | 1.440041e-50 | -8.615850e-47 |
| Msa0523430 | Msa1445910 | 0.850159 | 2.033785e-60 | -8.615850e-47 |
| Msa0523490 | Msa1445910 | 0.873979 | 9.662116e-68 | -8.615850e-47 |
| Msa0555220 | Msa1445910 | -0.800584 | 1.345689e-48 | -8.615850e-47 |
| Msa0576080 | Msa1445910 | 0.806360 | 8.544294e-50 | -8.615850e-47 |
| Msa0576120 | Msa1445910 | 0.813856 | 2.070917e-51 | -8.615850e-47 |
| Msa0583360 | Msa1445910 | 0.807741 | 4.357923e-50 | -8.615850e-47 |
| Msa0921590 | Msa1445910 | -0.800451 | 1.432434e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445910 | MtrunA17_Chr8g0378161 | 97.927 | 193 | 4 | 0 | 1 | 193 | 1 | 193 | 1.18e-142 | 395 |
| Msa1445910 | MtrunA17_Chr4g0050581 | 32.143 | 168 | 96 | 6 | 24 | 189 | 22 | 173 | 1.69e-17 | 76.3 |
| Msa1445910 | MtrunA17_Chr5g0405521 | 48.485 | 66 | 34 | 0 | 62 | 127 | 74 | 139 | 6.22e-15 | 69.3 |
| Msa1445910 | MtrunA17_Chr5g0405491 | 33.333 | 126 | 71 | 2 | 15 | 129 | 17 | 140 | 1.24e-14 | 68.6 |
| Msa1445910 | MtrunA17_Chr5g0405501 | 45.714 | 70 | 38 | 0 | 60 | 129 | 71 | 140 | 2.13e-14 | 67.8 |
| Msa1445910 | MtrunA17_Chr8g0371891 | 42.857 | 70 | 40 | 0 | 60 | 129 | 47 | 116 | 1.16e-13 | 65.1 |
| Msa1445910 | MtrunA17_Chr2g0333221 | 35.644 | 101 | 54 | 2 | 39 | 131 | 41 | 138 | 7.09e-13 | 66.2 |
| Msa1445910 | MtrunA17_Chr3g0103131 | 47.692 | 65 | 34 | 0 | 60 | 124 | 59 | 123 | 7.65e-13 | 63.5 |
| Msa1445910 | MtrunA17_Chr7g0271891 | 46.970 | 66 | 33 | 1 | 61 | 124 | 17 | 82 | 1.12e-12 | 63.2 |
| Msa1445910 | MtrunA17_Chr7g0269841 | 42.466 | 73 | 40 | 1 | 59 | 131 | 25 | 95 | 3.90e-12 | 63.9 |
| Msa1445910 | MtrunA17_Chr8g0344721 | 44.118 | 68 | 34 | 1 | 61 | 124 | 11 | 78 | 4.52e-12 | 62.8 |
| Msa1445910 | MtrunA17_Chr6g0478651 | 36.066 | 122 | 65 | 5 | 19 | 132 | 21 | 137 | 9.43e-12 | 63.2 |
| Msa1445910 | MtrunA17_Chr2g0328581 | 44.444 | 63 | 32 | 1 | 62 | 124 | 77 | 136 | 1.55e-11 | 60.8 |
| Msa1445910 | MtrunA17_Chr5g0426951 | 42.466 | 73 | 40 | 1 | 58 | 130 | 81 | 151 | 1.67e-11 | 62.4 |
| Msa1445910 | MtrunA17_Chr3g0138471 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.15e-11 | 61.6 |
| Msa1445910 | MtrunA17_Chr3g0123861 | 38.889 | 72 | 41 | 1 | 54 | 125 | 76 | 144 | 2.16e-11 | 62.0 |
| Msa1445910 | MtrunA17_Chr7g0253281 | 45.455 | 66 | 33 | 1 | 62 | 127 | 56 | 118 | 4.01e-11 | 60.8 |
| Msa1445910 | MtrunA17_Chr1g0206121 | 30.328 | 122 | 76 | 2 | 20 | 141 | 1 | 113 | 8.66e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1445910 | AT4G13830.2 | 51.010 | 198 | 84 | 5 | 1 | 190 | 1 | 193 | 5.71e-60 | 186 |
| Msa1445910 | AT4G13830.1 | 58.779 | 131 | 47 | 3 | 23 | 147 | 23 | 152 | 4.00e-43 | 142 |
| Msa1445910 | AT4G13830.3 | 58.015 | 131 | 48 | 3 | 23 | 147 | 23 | 152 | 9.31e-43 | 142 |
| Msa1445910 | AT4G36040.1 | 47.887 | 71 | 36 | 1 | 60 | 129 | 65 | 135 | 1.72e-14 | 68.2 |
| Msa1445910 | AT1G56300.2 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 1.55e-13 | 64.7 |
| Msa1445910 | AT3G13310.1 | 37.624 | 101 | 52 | 3 | 29 | 127 | 35 | 126 | 2.14e-13 | 65.1 |
| Msa1445910 | AT1G56300.1 | 46.269 | 67 | 34 | 1 | 60 | 124 | 13 | 79 | 2.43e-13 | 65.1 |
| Msa1445910 | AT2G17880.1 | 45.455 | 66 | 36 | 0 | 60 | 125 | 68 | 133 | 2.09e-12 | 62.8 |
| Msa1445910 | AT4G39960.1 | 41.892 | 74 | 40 | 1 | 61 | 134 | 86 | 156 | 5.17e-12 | 63.9 |
| Msa1445910 | AT4G39960.2 | 41.892 | 74 | 40 | 1 | 61 | 134 | 86 | 156 | 5.17e-12 | 63.9 |
| Msa1445910 | AT3G17830.1 | 36.364 | 121 | 68 | 5 | 20 | 137 | 23 | 137 | 7.67e-12 | 63.5 |
| Msa1445910 | AT3G62600.1 | 41.096 | 73 | 41 | 1 | 59 | 131 | 25 | 95 | 1.09e-11 | 62.8 |
| Msa1445910 | AT2G22360.1 | 40.541 | 74 | 41 | 1 | 61 | 134 | 87 | 157 | 1.27e-11 | 62.8 |
| Msa1445910 | AT3G14200.1 | 43.939 | 66 | 36 | 1 | 60 | 124 | 12 | 77 | 2.11e-11 | 61.2 |
| Msa1445910 | AT5G25530.2 | 40.845 | 71 | 41 | 1 | 61 | 131 | 5 | 74 | 2.65e-11 | 61.6 |
| Msa1445910 | AT1G80030.2 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1445910 | AT1G80030.3 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1445910 | AT1G80030.1 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 3.85e-11 | 61.6 |
| Msa1445910 | AT1G80030.4 | 38.462 | 78 | 45 | 1 | 54 | 131 | 69 | 143 | 4.28e-11 | 61.6 |
| Msa1445910 | AT1G59980.1 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.41e-11 | 61.2 |
| Msa1445910 | AT1G59980.2 | 46.970 | 66 | 33 | 1 | 59 | 124 | 22 | 85 | 4.68e-11 | 61.2 |
| Msa1445910 | AT1G59725.1 | 40.000 | 65 | 39 | 0 | 61 | 125 | 5 | 69 | 8.18e-11 | 60.5 |
| Msa1445910 | AT2G35720.1 | 33.000 | 100 | 66 | 1 | 59 | 157 | 14 | 113 | 9.34e-11 | 60.5 |
Find 82 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCCACTTGGTTATGTTTC+TGG | 0.145261 | tig0031250:-3103 | None:intergenic |
| TATAATTAAATTAAACAAAA+TGG | 0.235071 | tig0031250:+3129 | None:intergenic |
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | tig0031250:-6392 | Msa1445910:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | tig0031250:+3408 | None:intergenic |
| GTCCACTTGGTTATGTTTCT+GGG | 0.284680 | tig0031250:-3102 | None:intergenic |
| TCTAAAACAAGTAAACTATA+TGG | 0.307449 | tig0031250:+3192 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | tig0031250:+6364 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | tig0031250:-6269 | Msa1445910:CDS |
| TTGAAGGTGGCTCTAAGCTT+TGG | 0.367822 | tig0031250:+6436 | None:intergenic |
| CTGTTCAATTGTATGATTCA+AGG | 0.368756 | tig0031250:+6632 | None:intergenic |
| CGCCACCACGCCGTCGTTGA+AGG | 0.396835 | tig0031250:+6420 | None:intergenic |
| GGATGACCCGAATGAGATTC+GGG | 0.401935 | tig0031250:+6462 | None:intergenic |
| TGAAGGTGGCTCTAAGCTTT+GGG | 0.403440 | tig0031250:+6437 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | tig0031250:-6469 | Msa1445910:CDS |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | tig0031250:-6365 | Msa1445910:CDS |
| AGGATGACCCGAATGAGATT+CGG | 0.411788 | tig0031250:+6461 | None:intergenic |
| TCGGGTCATGGGTATGGTGG+TGG | 0.415955 | tig0031250:+6480 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | tig0031250:+6357 | None:intergenic |
| ATGAAGCGATAATCGCTTCC+GGG | 0.421198 | tig0031250:+6541 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | tig0031250:-6149 | Msa1445910:intron |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | tig0031250:-6231 | Msa1445910:CDS |
| GAGAGAGAGATGCGTTGTTA+CGG | 0.451601 | tig0031250:-6574 | Msa1445910:exon |
| GATGAAGCGATAATCGCTTC+CGG | 0.453064 | tig0031250:+6540 | None:intergenic |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | tig0031250:-6299 | Msa1445910:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | tig0031250:+6468 | None:intergenic |
| TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | tig0031250:-3468 | Msa1445910:intron |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | tig0031250:-6468 | Msa1445910:CDS |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | tig0031250:+6217 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | tig0031250:-6391 | Msa1445910:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | tig0031250:-6263 | Msa1445910:CDS |
| CTTCAACGACGGCGTGGTGG+CGG | 0.476011 | tig0031250:-6419 | Msa1445910:CDS |
| TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | tig0031250:-3460 | Msa1445910:CDS |
| CGGGTCATGGGTATGGTGGT+GGG | 0.482731 | tig0031250:+6481 | None:intergenic |
| CTCGAATACGCCAGCAGAGA+GGG | 0.484447 | tig0031250:-3349 | Msa1445910:CDS |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | tig0031250:-6206 | Msa1445910:CDS |
| AGTGAAGGAGGAGGTAGTGT+TGG | 0.495639 | tig0031250:+6514 | None:intergenic |
| TGAGATTCGGGTCATGGGTA+TGG | 0.497946 | tig0031250:+6474 | None:intergenic |
| GGGTATGGTGGTGGGTCGGA+AGG | 0.500342 | tig0031250:+6489 | None:intergenic |
| CGATCCGGTGGTGAAACATC+CGG | 0.500626 | tig0031250:+6301 | None:intergenic |
| TCCACTTGGTTATGTTTCTG+GGG | 0.510926 | tig0031250:-3101 | None:intergenic |
| GTATACTCTTCCACCCGATC+CGG | 0.515930 | tig0031250:+6286 | None:intergenic |
| CAACGACGGCGTGGTGGCGG+AGG | 0.521531 | tig0031250:-6416 | Msa1445910:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | tig0031250:+6302 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | tig0031250:+6469 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | tig0031250:-3399 | Msa1445910:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | tig0031250:-6376 | Msa1445910:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | tig0031250:-6300 | Msa1445910:CDS |
| TCGAATACGCCAGCAGAGAG+GGG | 0.542128 | tig0031250:-3348 | Msa1445910:CDS |
| CGGAAGGACAGTGAAGGAGG+AGG | 0.549643 | tig0031250:+6505 | None:intergenic |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | tig0031250:+6264 | None:intergenic |
| CTTAGAGCCACCTTCAACGA+CGG | 0.551470 | tig0031250:-6430 | Msa1445910:CDS |
| TCATGGGTATGGTGGTGGGT+CGG | 0.552227 | tig0031250:+6485 | None:intergenic |
| ACGGCGTGGTGGCGGAGGAA+CGG | 0.572751 | tig0031250:-6411 | Msa1445910:CDS |
| CACCTTCAACGACGGCGTGG+TGG | 0.573318 | tig0031250:-6422 | Msa1445910:CDS |
| TGCTGCTGATAATACGTCAT+GGG | 0.573906 | tig0031250:-3375 | Msa1445910:CDS |
| CACCACGCCGTCGTTGAAGG+TGG | 0.581703 | tig0031250:+6423 | None:intergenic |
| GGTCGGAAGGACAGTGAAGG+AGG | 0.583185 | tig0031250:+6502 | None:intergenic |
| TGTTACGGCTTAACAATCCC+CGG | 0.585898 | tig0031250:-6559 | Msa1445910:CDS |
| TACTCTTCCACCCGATCCGG+TGG | 0.594060 | tig0031250:+6289 | None:intergenic |
| AGGATGAATGGAAATCTCGT+TGG | 0.596088 | tig0031250:-3448 | Msa1445910:CDS |
| TTAATTATAATCAGTCCACT+TGG | 0.596464 | tig0031250:-3115 | Msa1445910:three_prime_UTR |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | tig0031250:-3405 | Msa1445910:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | tig0031250:-6260 | Msa1445910:CDS |
| GCTCGAATACGCCAGCAGAG+AGG | 0.605654 | tig0031250:-3350 | Msa1445910:CDS |
| TGTTTCACCACCGGATCGGG+TGG | 0.605740 | tig0031250:-6296 | Msa1445910:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | tig0031250:-6198 | Msa1445910:CDS |
| CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | tig0031250:-3431 | Msa1445910:CDS |
| GTGGGTCGGAAGGACAGTGA+AGG | 0.611080 | tig0031250:+6499 | None:intergenic |
| GATTCGGGTCATGGGTATGG+TGG | 0.612358 | tig0031250:+6477 | None:intergenic |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | tig0031250:-6199 | Msa1445910:CDS |
| AATTAAACAAAATGGCAAAG+AGG | 0.626040 | tig0031250:+3137 | None:intergenic |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | tig0031250:-6305 | Msa1445910:CDS |
| CGAATACGCCAGCAGAGAGG+GGG | 0.635411 | tig0031250:-3347 | Msa1445910:CDS |
| TGCTGATAATACGTCATGGG+CGG | 0.647620 | tig0031250:-3372 | Msa1445910:CDS |
| GGTGGCTCTAAGCTTTGGGA+AGG | 0.653939 | tig0031250:+6441 | None:intergenic |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | tig0031250:-6228 | Msa1445910:CDS |
| AGCCACCTTCAACGACGGCG+TGG | 0.661105 | tig0031250:-6425 | Msa1445910:CDS |
| ATGCTGCTGATAATACGTCA+TGG | 0.662327 | tig0031250:-3376 | Msa1445910:CDS |
| TGAAGCGATAATCGCTTCCG+GGG | 0.671244 | tig0031250:+6542 | None:intergenic |
| ATTATACACATAGAGAACAA+AGG | 0.681965 | tig0031250:+3307 | None:intergenic |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | tig0031250:-6320 | Msa1445910:CDS |
| GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | tig0031250:-6279 | Msa1445910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGAAATATAAGAAAAAA+TGG | + | tig0031250:3661-3680 | None:intergenic | 10.0% |
| !! | GTTATTAATTATTATTTGTT+AGG | - | tig0031250:4277-4296 | Msa1445910:intron | 10.0% |
| !! | ATTATAATGAAATAAAAAAC+AGG | - | tig0031250:5528-5547 | Msa1445910:intron | 10.0% |
| !! | AGAAAAAATATAATTGATTA+TGG | + | tig0031250:5645-5664 | None:intergenic | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | - | tig0031250:5645-5664 | Msa1445910:intron | 10.0% |
| !!! | ATTTTTATTTTTCATTGAAT+AGG | - | tig0031250:6202-6221 | Msa1445910:CDS | 10.0% |
| !!! | TTGATTTTTTTTTCTTCTTA+TGG | - | tig0031250:3685-3704 | Msa1445910:intron | 15.0% |
| !!! | TGATTTTTTTTTCTTCTTAT+GGG | - | tig0031250:3686-3705 | Msa1445910:intron | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | - | tig0031250:3757-3776 | Msa1445910:intron | 15.0% |
| !!! | TTTTTGAACTTTTATATGAT+TGG | - | tig0031250:3872-3891 | Msa1445910:intron | 15.0% |
| !!! | ATTTGATTTATACATACTAT+CGG | + | tig0031250:3922-3941 | None:intergenic | 15.0% |
| !! | TTGCTTAAAAATATCTTATA+TGG | - | tig0031250:4607-4626 | Msa1445910:intron | 15.0% |
| !!! | CAGTTTTTTGTAATAAAAAA+TGG | + | tig0031250:5390-5409 | None:intergenic | 15.0% |
| !! | TTACTTTGATTCTTATTAAA+AGG | + | tig0031250:5444-5463 | None:intergenic | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | + | tig0031250:5640-5659 | None:intergenic | 15.0% |
| !! | AAAATATAATTGATTATGGA+AGG | + | tig0031250:5641-5660 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTCTTCTTATG+GGG | - | tig0031250:3687-3706 | Msa1445910:intron | 20.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | - | tig0031250:3819-3838 | Msa1445910:intron | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | - | tig0031250:3847-3866 | Msa1445910:intron | 20.0% |
| !! | TTACAATTTATCAATCTGTT+CGG | - | tig0031250:4864-4883 | Msa1445910:intron | 20.0% |
| !! | AGTTGTATTAATTGTTAAGT+TGG | - | tig0031250:5842-5861 | Msa1445910:intron | 20.0% |
| !! | ATAATATAATCCTTGAATCA+TGG | - | tig0031250:6072-6091 | Msa1445910:intron | 20.0% |
| !! | TAAGTTATTGCTTTCTTATT+AGG | - | tig0031250:6281-6300 | Msa1445910:CDS | 20.0% |
| !!! | TCTAAAACAAGTAAACTATA+TGG | + | tig0031250:6575-6594 | None:intergenic | 20.0% |
| ! | GATTATGTATGATAGAGATA+TGG | - | tig0031250:3558-3577 | Msa1445910:intron | 25.0% |
| !! | TTGTCAAGTTAGATCATTTT+TGG | - | tig0031250:3945-3964 | Msa1445910:intron | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | - | tig0031250:4086-4105 | Msa1445910:intron | 25.0% |
| !!! | TATTTTTTTCTCCCTTTTTG+AGG | - | tig0031250:4301-4320 | Msa1445910:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | + | tig0031250:4315-4334 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | + | tig0031250:4316-4335 | None:intergenic | 25.0% |
| ! | AAAAGCTTCTCAAACAAAAA+AGG | + | tig0031250:4402-4421 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | - | tig0031250:4401-4420 | Msa1445910:intron | 25.0% |
| ! | TACCATGCAAAATCAATTTA+AGG | + | tig0031250:4491-4510 | None:intergenic | 25.0% |
| !!! | TCCTTAAATTGATTTTGCAT+GGG | - | tig0031250:4487-4506 | Msa1445910:intron | 25.0% |
| !!! | ATGTTAAAATTAGTTTTGCC+TGG | - | tig0031250:4637-4656 | Msa1445910:intron | 25.0% |
| !!! | TGTTAAAATTAGTTTTGCCT+GGG | - | tig0031250:4638-4657 | Msa1445910:intron | 25.0% |
| ! | TCAATTATTAATGTGAGCTA+TGG | + | tig0031250:4808-4827 | None:intergenic | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | - | tig0031250:4814-4833 | Msa1445910:intron | 25.0% |
| !! | ATAAATTGTAAGCTTTTCAG+GGG | + | tig0031250:4855-4874 | None:intergenic | 25.0% |
| !! | GATAAATTGTAAGCTTTTCA+GGG | + | tig0031250:4856-4875 | None:intergenic | 25.0% |
| !! | TGATAAATTGTAAGCTTTTC+AGG | + | tig0031250:4857-4876 | None:intergenic | 25.0% |
| ! | TACAATTTATCAATCTGTTC+GGG | - | tig0031250:4865-4884 | Msa1445910:intron | 25.0% |
| !!! | TGTGGTTTTATCATCATTTA+AGG | - | tig0031250:4992-5011 | Msa1445910:intron | 25.0% |
| !!! | AAGTTATTTTCCTACTGATT+TGG | - | tig0031250:5147-5166 | Msa1445910:intron | 25.0% |
| ! | GAACAAATATATATCAGAAC+TGG | - | tig0031250:5179-5198 | Msa1445910:intron | 25.0% |
| !!! | AGTATCATAATATTTTGAGG+AGG | - | tig0031250:5211-5230 | Msa1445910:intron | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | - | tig0031250:5314-5333 | Msa1445910:intron | 25.0% |
| ! | CAAAGTAAAAACAAAGTGAT+AGG | - | tig0031250:5456-5475 | Msa1445910:intron | 25.0% |
| ! | TTAAACTAATCACATAATCC+AGG | - | tig0031250:5894-5913 | Msa1445910:intron | 25.0% |
| !! | TACTGTTTTATGTACATAGA+AGG | - | tig0031250:6171-6190 | Msa1445910:CDS | 25.0% |
| ! | ATTATACACATAGAGAACAA+AGG | + | tig0031250:6460-6479 | None:intergenic | 25.0% |
| ! | AATTAAACAAAATGGCAAAG+AGG | + | tig0031250:6630-6649 | None:intergenic | 25.0% |
| ! | TTAATTATAATCAGTCCACT+TGG | - | tig0031250:6649-6668 | Msa1445910:five_prime_UTR | 25.0% |
| CTGTTCAATTGTATGATTCA+AGG | + | tig0031250:3135-3154 | None:intergenic | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | + | tig0031250:3410-3429 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | - | tig0031250:3615-3634 | Msa1445910:intron | 30.0% | |
| TACATACTATCGGTGTAAAA+AGG | + | tig0031250:3912-3931 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | - | tig0031250:4051-4070 | Msa1445910:intron | 30.0% |
| TTATTGTGCAACTTCTATGT+TGG | - | tig0031250:4361-4380 | Msa1445910:intron | 30.0% | |
| !! | GTCCTTAAATTGATTTTGCA+TGG | - | tig0031250:4486-4505 | Msa1445910:intron | 30.0% |
| AACACAAGAATCATCTATGA+TGG | + | tig0031250:4547-4566 | None:intergenic | 30.0% | |
| !! | GTCCTTAAATTGATTTTGCA+TGG | - | tig0031250:4486-4505 | Msa1445910:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | - | tig0031250:4488-4507 | Msa1445910:intron | 30.0% |
| !!! | AGTGTTAATTTTTTCAACCC+AGG | + | tig0031250:4658-4677 | None:intergenic | 30.0% |
| ACAATTTATCAATCTGTTCG+GGG | - | tig0031250:4866-4885 | Msa1445910:intron | 30.0% | |
| TTTGATTACATGACATTGTG+TGG | - | tig0031250:4974-4993 | Msa1445910:intron | 30.0% | |
| !!! | GGGAGTATCATAATATTTTG+AGG | - | tig0031250:5208-5227 | Msa1445910:intron | 30.0% |
| !! | TTCTGGTTCCTGATATTTAT+CGG | - | tig0031250:5257-5276 | Msa1445910:intron | 30.0% |
| ATTTGAACCTAAGAGAAAGA+AGG | + | tig0031250:5309-5328 | None:intergenic | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | - | tig0031250:5332-5351 | Msa1445910:intron | 30.0% | |
| ! | CAAAGTGATAGGTACATTTT+AGG | - | tig0031250:5467-5486 | Msa1445910:intron | 30.0% |
| GAAATAAAAAACAGGCAACT+TGG | - | tig0031250:5536-5555 | Msa1445910:intron | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | + | tig0031250:5690-5709 | None:intergenic | 30.0% | |
| CACACAAAAGGAAATGAATA+TGG | + | tig0031250:5759-5778 | None:intergenic | 30.0% | |
| TGTTGACATATACACACAAA+AGG | + | tig0031250:5771-5790 | None:intergenic | 30.0% | |
| !!! | ATAATCCAGGATGTTGTTTT+CGG | - | tig0031250:5907-5926 | Msa1445910:intron | 30.0% |
| ! | TTTTCATTGAATAGGACCTT+TGG | - | tig0031250:6210-6229 | Msa1445910:CDS | 30.0% |
| TTTCATTGAATAGGACCTTT+GGG | - | tig0031250:6211-6230 | Msa1445910:CDS | 30.0% | |
| TTATTAGGTGAGTGAACAAA+AGG | - | tig0031250:6296-6315 | Msa1445910:CDS | 30.0% | |
| GTATACCAAGAGGTTTATTC+AGG | - | tig0031250:3495-3514 | Msa1445910:intron | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | - | tig0031250:3533-3552 | Msa1445910:intron | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | + | tig0031250:3550-3569 | None:intergenic | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | - | tig0031250:3565-3584 | Msa1445910:intron | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | - | tig0031250:3566-3585 | Msa1445910:intron | 35.0% | |
| AAAACAATGAAGGGTCACTT+TGG | + | tig0031250:4195-4214 | None:intergenic | 35.0% | |
| ! | ACCCTTCATTGTTTTCATCT+GGG | - | tig0031250:4200-4219 | Msa1445910:intron | 35.0% |
| TCCCAGATGAAAACAATGAA+GGG | + | tig0031250:4204-4223 | None:intergenic | 35.0% | |
| ! | TTCATTGTTTTCATCTGGGA+GGG | - | tig0031250:4204-4223 | Msa1445910:intron | 35.0% |
| ! | TTTGTCAAGGTTCTGATTTG+TGG | - | tig0031250:4231-4250 | Msa1445910:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | - | tig0031250:4335-4354 | Msa1445910:intron | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | - | tig0031250:4445-4464 | Msa1445910:intron | 35.0% |
| AACACAAGAATCATCCATGA+TGG | + | tig0031250:4462-4481 | None:intergenic | 35.0% | |
| ATGGTATCTCAAGCAAGTTT+AGG | - | tig0031250:4505-4524 | Msa1445910:intron | 35.0% | |
| CCCCATGCAAAATCAATTTA+AGG | + | tig0031250:4576-4595 | None:intergenic | 35.0% | |
| !! | TTATTTTGCAGTGGAAAACC+CGG | + | tig0031250:4910-4929 | None:intergenic | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | + | tig0031250:4919-4938 | None:intergenic | 35.0% |
| AAACTTTCACAGAACTGAGA+TGG | - | tig0031250:5072-5091 | Msa1445910:intron | 35.0% | |
| CCTAAGATAACCAAATCAGT+AGG | + | tig0031250:5160-5179 | None:intergenic | 35.0% | |
| !! | CCTACTGATTTGGTTATCTT+AGG | - | tig0031250:5157-5176 | Msa1445910:intron | 35.0% |
| ATATATCAGAACTGGACTGT+AGG | - | tig0031250:5187-5206 | Msa1445910:intron | 35.0% | |
| TATATCAGAACTGGACTGTA+GGG | - | tig0031250:5188-5207 | Msa1445910:intron | 35.0% | |
| ATTTGCTTAATCGTGACTTC+TGG | - | tig0031250:5240-5259 | Msa1445910:intron | 35.0% | |
| AAAAACAGGCAACTTGGTTT+AGG | - | tig0031250:5542-5561 | Msa1445910:intron | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | - | tig0031250:5543-5562 | Msa1445910:intron | 35.0% | |
| !! | GTGTAACTGACTTACGTTTT+GGG | - | tig0031250:5565-5584 | Msa1445910:intron | 35.0% |
| ! | GCTTGTATGAGAGTATGTTA+CGG | - | tig0031250:5707-5726 | Msa1445910:intron | 35.0% |
| !! | ACTAACTTGTTCAGTGTTTG+TGG | + | tig0031250:5811-5830 | None:intergenic | 35.0% |
| TGATTCGTTACCATGATTCA+AGG | + | tig0031250:6085-6104 | None:intergenic | 35.0% | |
| ! | AATGACCCTATCTCTTTTGA+AGG | + | tig0031250:6110-6129 | None:intergenic | 35.0% |
| TTCATTGAATAGGACCTTTG+GGG | - | tig0031250:6212-6231 | Msa1445910:CDS | 35.0% | |
| TGAGTGAACAAAAGGATGAA+TGG | - | tig0031250:6304-6323 | Msa1445910:CDS | 35.0% | |
| !!! | GCAAAGAGGCACATTTTTTT+TGG | + | tig0031250:6616-6635 | None:intergenic | 35.0% |
| !! | ACTTGCAAGAAAGTATCACC+CGG | - | tig0031250:3444-3463 | Msa1445910:CDS | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | - | tig0031250:4199-4218 | Msa1445910:intron | 40.0% |
| CTCCCAGATGAAAACAATGA+AGG | + | tig0031250:4205-4224 | None:intergenic | 40.0% | |
| ! | CTTCATTGTTTTCATCTGGG+AGG | - | tig0031250:4203-4222 | Msa1445910:intron | 40.0% |
| GTAGAGCTTATGACTGAAAC+CGG | - | tig0031250:4888-4907 | Msa1445910:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | - | tig0031250:4889-4908 | Msa1445910:intron | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | - | tig0031250:5009-5028 | Msa1445910:intron | 40.0% | |
| !!! | ATTTTGGCTCAGCCAAGATA+AGG | + | tig0031250:5024-5043 | None:intergenic | 40.0% |
| CTCAGTTCTGTGAAAGTTTC+AGG | + | tig0031250:5071-5090 | None:intergenic | 40.0% | |
| !! | CTCAAGCACCGATAAATATC+AGG | + | tig0031250:5268-5287 | None:intergenic | 40.0% |
| ! | CTGATATTTATCGGTGCTTG+AGG | - | tig0031250:5266-5285 | Msa1445910:intron | 40.0% |
| GAAAGAAGGAGATAGCACAA+AGG | + | tig0031250:5295-5314 | None:intergenic | 40.0% | |
| GCTATCTCCTTCTTTCTCTT+AGG | - | tig0031250:5299-5318 | Msa1445910:intron | 40.0% | |
| !! | GGTACATTTTAGGTGTGCTT+TGG | - | tig0031250:5477-5496 | Msa1445910:intron | 40.0% |
| !! | GGTGTAACTGACTTACGTTT+TGG | - | tig0031250:5564-5583 | Msa1445910:intron | 40.0% |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | + | tig0031250:5808-5827 | None:intergenic | 40.0% |
| ACAATCCGAAAACAACATCC+TGG | + | tig0031250:5915-5934 | None:intergenic | 40.0% | |
| AGTCGATTAGAGAATGAGTC+AGG | - | tig0031250:5942-5961 | Msa1445910:intron | 40.0% | |
| ATCACGCCTTCAAAAGAGAT+AGG | - | tig0031250:6101-6120 | Msa1445910:intron | 40.0% | |
| TCACGCCTTCAAAAGAGATA+GGG | - | tig0031250:6102-6121 | Msa1445910:intron | 40.0% | |
| TCATTGAATAGGACCTTTGG+GGG | - | tig0031250:6213-6232 | Msa1445910:CDS | 40.0% | |
| AGGATGAATGGAAATCTCGT+TGG | - | tig0031250:6316-6335 | Msa1445910:CDS | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | + | tig0031250:6359-6378 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | - | tig0031250:6359-6378 | Msa1445910:CDS | 40.0% | |
| AAGAAGTGATAGCAAGGTCA+TGG | - | tig0031250:6365-6384 | Msa1445910:CDS | 40.0% | |
| ATGCTGCTGATAATACGTCA+TGG | - | tig0031250:6388-6407 | Msa1445910:CDS | 40.0% | |
| TGCTGCTGATAATACGTCAT+GGG | - | tig0031250:6389-6408 | Msa1445910:CDS | 40.0% | |
| GAGAGAGAGATGCGTTGTTA+CGG | - | tig0031250:3190-3209 | Msa1445910:three_prime_UTR | 45.0% | |
| TGTTACGGCTTAACAATCCC+CGG | - | tig0031250:3205-3224 | Msa1445910:three_prime_UTR | 45.0% | |
| ATGAAGCGATAATCGCTTCC+GGG | + | tig0031250:3226-3245 | None:intergenic | 45.0% | |
| GATGAAGCGATAATCGCTTC+CGG | + | tig0031250:3227-3246 | None:intergenic | 45.0% | |
| AGGATGACCCGAATGAGATT+CGG | + | tig0031250:3306-3325 | None:intergenic | 45.0% | |
| !! | TGAAGGTGGCTCTAAGCTTT+GGG | + | tig0031250:3330-3349 | None:intergenic | 45.0% |
| !! | TTGAAGGTGGCTCTAAGCTT+TGG | + | tig0031250:3331-3350 | None:intergenic | 45.0% |
| ACCAGAATCCGGTTCATTGA+TGG | - | tig0031250:3399-3418 | Msa1445910:CDS | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | + | tig0031250:3403-3422 | None:intergenic | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | + | tig0031250:3503-3522 | None:intergenic | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | - | tig0031250:3501-3520 | Msa1445910:intron | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | - | tig0031250:3536-3555 | Msa1445910:intron | 45.0% | |
| CATTGAATAGGACCTTTGGG+GGG | - | tig0031250:6214-6233 | Msa1445910:CDS | 45.0% | |
| TGCTGATAATACGTCATGGG+CGG | - | tig0031250:6392-6411 | Msa1445910:CDS | 45.0% | |
| !!! | TTAATAAATTTTCATAATTT+TGG | + | tig0031250:5040-5059 | None:intergenic | 5.0% |
| !!! | TAATAAATTATAAATTGTTT+TGG | + | tig0031250:5509-5528 | None:intergenic | 5.0% |
| !! | TATAATTAAATTAAACAAAA+TGG | + | tig0031250:6638-6657 | None:intergenic | 5.0% |
| TGAAGCGATAATCGCTTCCG+GGG | + | tig0031250:3225-3244 | None:intergenic | 50.0% | |
| AGTGAAGGAGGAGGTAGTGT+TGG | + | tig0031250:3253-3272 | None:intergenic | 50.0% | |
| TGAGATTCGGGTCATGGGTA+TGG | + | tig0031250:3293-3312 | None:intergenic | 50.0% | |
| CCGAATGAGATTCGGGTCAT+GGG | + | tig0031250:3298-3317 | None:intergenic | 50.0% | |
| CCCATGACCCGAATCTCATT+CGG | - | tig0031250:3295-3314 | Msa1445910:three_prime_UTR | 50.0% | |
| CCATGACCCGAATCTCATTC+GGG | - | tig0031250:3296-3315 | Msa1445910:three_prime_UTR | 50.0% | |
| GGATGACCCGAATGAGATTC+GGG | + | tig0031250:3305-3324 | None:intergenic | 50.0% | |
| CTTAGAGCCACCTTCAACGA+CGG | - | tig0031250:3334-3353 | Msa1445910:exon | 50.0% | |
| ACGGAGCTTCTACGATCTTC+TGG | - | tig0031250:3372-3391 | Msa1445910:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | - | tig0031250:3373-3392 | Msa1445910:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | - | tig0031250:3388-3407 | Msa1445910:CDS | 50.0% | |
| GTATACTCTTCCACCCGATC+CGG | + | tig0031250:3481-3500 | None:intergenic | 50.0% | |
| ! | GGGTGGAAGAGTATACCAAG+AGG | - | tig0031250:3485-3504 | Msa1445910:intron | 50.0% |
| GAGGTTTATTCAGGTGCAGG+AGG | - | tig0031250:3504-3523 | Msa1445910:intron | 50.0% | |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | - | tig0031250:4218-4237 | Msa1445910:intron | 50.0% |
| TTGGCTCAGCCAAGATAAGG+AGG | + | tig0031250:5021-5040 | None:intergenic | 50.0% | |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | + | tig0031250:5799-5818 | None:intergenic | 50.0% |
| ! | AATAGGACCTTTGGGGGGAT+TGG | - | tig0031250:6219-6238 | Msa1445910:CDS | 50.0% |
| CGTTGGCAATCTCAACTCGA+TGG | - | tig0031250:6333-6352 | Msa1445910:CDS | 50.0% | |
| !! | TCATGGGTATGGTGGTGGGT+CGG | + | tig0031250:3282-3301 | None:intergenic | 55.0% |
| GATTCGGGTCATGGGTATGG+TGG | + | tig0031250:3290-3309 | None:intergenic | 55.0% | |
| CCCGAATGAGATTCGGGTCA+TGG | + | tig0031250:3299-3318 | None:intergenic | 55.0% | |
| !! | GGTGGCTCTAAGCTTTGGGA+AGG | + | tig0031250:3326-3345 | None:intergenic | 55.0% |
| TCACCCGGATGTTTCACCAC+CGG | - | tig0031250:3459-3478 | Msa1445910:CDS | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | + | tig0031250:3465-3484 | None:intergenic | 55.0% | |
| CGATCCGGTGGTGAAACATC+CGG | + | tig0031250:3466-3485 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | - | tig0031250:3464-3483 | Msa1445910:CDS | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | - | tig0031250:3465-3484 | Msa1445910:intron | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | + | tig0031250:5800-5819 | None:intergenic | 55.0% |
| CTTCTAGCCAATCCCCCCAA+AGG | + | tig0031250:6229-6248 | None:intergenic | 55.0% | |
| CTCGAATACGCCAGCAGAGA+GGG | - | tig0031250:6415-6434 | Msa1445910:CDS | 55.0% | |
| TCGAATACGCCAGCAGAGAG+GGG | - | tig0031250:6416-6435 | Msa1445910:CDS | 55.0% | |
| CGGAAGGACAGTGAAGGAGG+AGG | + | tig0031250:3262-3281 | None:intergenic | 60.0% | |
| GGTCGGAAGGACAGTGAAGG+AGG | + | tig0031250:3265-3284 | None:intergenic | 60.0% | |
| GTGGGTCGGAAGGACAGTGA+AGG | + | tig0031250:3268-3287 | None:intergenic | 60.0% | |
| CGGGTCATGGGTATGGTGGT+GGG | + | tig0031250:3286-3305 | None:intergenic | 60.0% | |
| TCGGGTCATGGGTATGGTGG+TGG | + | tig0031250:3287-3306 | None:intergenic | 60.0% | |
| TGTTTCACCACCGGATCGGG+TGG | - | tig0031250:3468-3487 | Msa1445910:intron | 60.0% | |
| TACTCTTCCACCCGATCCGG+TGG | + | tig0031250:3478-3497 | None:intergenic | 60.0% | |
| GCTCGAATACGCCAGCAGAG+AGG | - | tig0031250:6414-6433 | Msa1445910:CDS | 60.0% | |
| CGAATACGCCAGCAGAGAGG+GGG | - | tig0031250:6417-6436 | Msa1445910:CDS | 60.0% | |
| GTCACAATCCCCCTCTCTGC+TGG | + | tig0031250:6428-6447 | None:intergenic | 60.0% | |
| !! | GGGTATGGTGGTGGGTCGGA+AGG | + | tig0031250:3278-3297 | None:intergenic | 65.0% |
| AGCCACCTTCAACGACGGCG+TGG | - | tig0031250:3339-3358 | Msa1445910:exon | 65.0% | |
| CACCACGCCGTCGTTGAAGG+TGG | + | tig0031250:3344-3363 | None:intergenic | 65.0% | |
| CACCTTCAACGACGGCGTGG+TGG | - | tig0031250:3342-3361 | Msa1445910:CDS | 65.0% | |
| CTTCAACGACGGCGTGGTGG+CGG | - | tig0031250:3345-3364 | Msa1445910:CDS | 65.0% | |
| CGCCACCACGCCGTCGTTGA+AGG | + | tig0031250:3347-3366 | None:intergenic | 70.0% | |
| !! | ACGGCGTGGTGGCGGAGGAA+CGG | - | tig0031250:3353-3372 | Msa1445910:CDS | 70.0% |
| !! | CAACGACGGCGTGGTGGCGG+AGG | - | tig0031250:3348-3367 | Msa1445910:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031250 | gene | 3104 | 6682 | 3104 | ID=Msa1445910;Name=Msa1445910 |
| tig0031250 | mRNA | 3104 | 6682 | 3104 | ID=Msa1445910-mRNA-1;Parent=Msa1445910;Name=Msa1445910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|2|236|193 |
| tig0031250 | exon | 3104 | 3483 | 3104 | ID=Msa1445910-mRNA-1:exon:15211;Parent=Msa1445910-mRNA-1 |
| tig0031250 | exon | 6150 | 6682 | 6150 | ID=Msa1445910-mRNA-1:exon:15210;Parent=Msa1445910-mRNA-1 |
| tig0031250 | five_prime_UTR | 6588 | 6682 | 6588 | ID=Msa1445910-mRNA-1:five_prime_utr;Parent=Msa1445910-mRNA-1 |
| tig0031250 | CDS | 6150 | 6587 | 6150 | ID=Msa1445910-mRNA-1:cds;Parent=Msa1445910-mRNA-1 |
| tig0031250 | CDS | 3340 | 3483 | 3340 | ID=Msa1445910-mRNA-1:cds;Parent=Msa1445910-mRNA-1 |
| tig0031250 | three_prime_UTR | 3104 | 3339 | 3104 | ID=Msa1445910-mRNA-1:three_prime_utr;Parent=Msa1445910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
