AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1452660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1452660 MtrunA17_Chr2g0298151 85.882 85 12 0 31 115 298 382 1.48e-41 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 172 sgRNAs with CRISPR-Local

Find 572 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGAAGTCCTGGCCTTTC+AGG 0.160579 tig0034089:+12333 Msa1452660:three_prime_UTR
GTGAAGGGATACAGTATTTC+TGG 0.166430 tig0034089:+12062 Msa1452660:three_prime_UTR
CTGCCGTTTCCTAGTTATTT+TGG 0.183416 tig0034089:+12234 Msa1452660:three_prime_UTR
TAACTCAGGCTTTCAGAATT+TGG 0.199662 tig0034089:-11492 Msa1452660:intergenic
CTGACAGCTTGCTGATAATT+TGG 0.214090 tig0034089:-17786 Msa1452660:intergenic
AACAAGTACCTTGGGCAATT+TGG 0.226451 tig0034089:+11978 Msa1452660:three_prime_UTR
GCCTGAATATTATTGTAAAA+TGG 0.227587 tig0034089:-11756 Msa1452660:intergenic
GTATTACATGATTCCCGTTT+TGG 0.240757 tig0034089:-14470 Msa1452660:intergenic
TGATTAAATTGCATGTAAAT+AGG 0.266681 tig0034089:-12029 Msa1452660:intergenic
TACAATATGTTCAATTATAT+CGG 0.284564 tig0034089:-12513 Msa1452660:intergenic
GCTGTACCATTTGTTGTTGA+TGG 0.297035 tig0034089:+11870 Msa1452660:three_prime_UTR
TGCGACAGCAGCTGCTTATA+TGG 0.303267 tig0034089:+11722 Msa1452660:three_prime_UTR
TTGAACATATTGTAGAATTT+AGG 0.307280 tig0034089:+12522 Msa1452660:three_prime_UTR
AATTTATCAATGCATCCTTA+TGG 0.321235 tig0034089:+14564 Msa1452660:three_prime_UTR
GCAAGGAAGTTAACAATCTT+GGG 0.342004 tig0034089:-12452 Msa1452660:intergenic
TTTCCTGTACAGCCTTCTTT+TGG 0.343539 tig0034089:+12002 Msa1452660:three_prime_UTR
TGCAAGGAAGTTAACAATCT+TGG 0.343904 tig0034089:-12453 Msa1452660:intergenic
GTCAGTTTGTTCTCTTGCTC+AGG 0.347609 tig0034089:+14732 Msa1452660:three_prime_UTR
ATAAAACCTTCCCCAGCTTC+TGG 0.356966 tig0034089:+12369 Msa1452660:three_prime_UTR
GGAGGGTATGTAGAAATATA+TGG 0.357337 tig0034089:-11840 Msa1452660:intergenic
AGAAATTGAGGCATGGTATC+TGG 0.360418 tig0034089:+12393 Msa1452660:three_prime_UTR
CCAGCCACTACTTCAGTAAT+CGG 0.360960 tig0034089:+11680 Msa1452660:exon
ATTTGAACAACACTTGCTAT+AGG 0.372017 tig0034089:-12104 Msa1452660:intergenic
CTGTACCATTTGTTGTTGAT+GGG 0.373241 tig0034089:+11871 Msa1452660:three_prime_UTR
GTTTATTGTGGATGAAATCT+TGG 0.375343 tig0034089:+14708 Msa1452660:three_prime_UTR
CTAACACCAGGGGTTTCAAC+CGG 0.383150 tig0034089:+11918 Msa1452660:three_prime_UTR
TTCCTTGCAGAGTTGAAATC+TGG 0.383537 tig0034089:+12467 Msa1452660:three_prime_UTR
AGCAGCTGCTGTCGCATATA+GGG 0.389280 tig0034089:-11715 Msa1452660:intergenic
AAGTTAATGACTGATGTATT+CGG 0.389676 tig0034089:+12734 Msa1452660:three_prime_UTR
TACAATAATATTCAGGCCTC+AGG 0.390617 tig0034089:+11762 Msa1452660:three_prime_UTR
AAGCAGCTGCTGTCGCATAT+AGG 0.391993 tig0034089:-11716 Msa1452660:intergenic
AGGGTGTACACTTTGAGAAT+TGG 0.396528 tig0034089:-11604 Msa1452660:intergenic
GGCAACTTGCTTGAATTATG+AGG 0.396871 tig0034089:-11651 Msa1452660:intergenic
TCTGGATATCCAGACAAAAC+TGG 0.398981 tig0034089:-12312 Msa1452660:intergenic
CTTCATATCGTTATGGTAGC+TGG 0.410037 tig0034089:-11532 Msa1452660:intergenic
TACATTACAAAGCCCGTGTT+TGG 0.415737 tig0034089:-12264 Msa1452660:intergenic
TGAAGTAGTGGCTGGACATC+AGG 0.422179 tig0034089:-11672 Msa1452660:intergenic
GAGGGAACTTGCAGATAAAC+TGG 0.423438 tig0034089:+12897 Msa1452660:three_prime_UTR
CCTTTGAGTCTGCAGATGTA+TGG 0.425713 tig0034089:+12934 Msa1452660:three_prime_UTR
TGTTCCCTGCCAACGTAGGC+AGG 0.426429 tig0034089:-11624 Msa1452660:intergenic
CATACGGACTTCTTTGTTGT+GGG 0.429886 tig0034089:-11569 Msa1452660:intergenic
AGCTCAGCTTGTTCGTGAGC+TGG 0.434695 tig0034089:+14419 Msa1452660:three_prime_UTR
TACACCCTGCCTACGTTGGC+AGG 0.439547 tig0034089:+11619 Msa1452660:CDS
GTATGGTGACGCCTCTGAAC+GGG 0.439564 tig0034089:+17870 Msa1452660:three_prime_UTR
GCAAGTTCCCTCCTCTGCTA+AGG 0.440828 tig0034089:-12886 Msa1452660:intergenic
CAGCCACTACTTCAGTAATC+GGG 0.449872 tig0034089:+11681 Msa1452660:exon
TATTTCGCATGGAGCTGAAA+TGG 0.456375 tig0034089:+11947 Msa1452660:three_prime_UTR
TCTCTTGCTCAGGACCTGTA+TGG 0.459100 tig0034089:+14742 Msa1452660:three_prime_UTR
CCAGCTTCTGGTAGAAATTG+AGG 0.463746 tig0034089:+12381 Msa1452660:three_prime_UTR
TAACACCAGGGGTTTCAACC+GGG 0.464270 tig0034089:+11919 Msa1452660:three_prime_UTR
CAAGTTCCCTCCTCTGCTAA+GGG 0.464622 tig0034089:-12885 Msa1452660:intergenic
GGATATCCAGATGGAAGTCC+TGG 0.466778 tig0034089:+12324 Msa1452660:three_prime_UTR
TGACCACTATCAAAGGATCT+TGG 0.470659 tig0034089:-12425 Msa1452660:intergenic
TCGATTTATACAACAGAAGC+TGG 0.473377 tig0034089:+12652 Msa1452660:three_prime_UTR
ATTAAACTGCTTAAAGAAAG+AGG 0.476485 tig0034089:+11109 Msa1452660:five_prime_UTR
CCTCAATTTCTACCAGAAGC+TGG 0.480240 tig0034089:-12381 Msa1452660:intergenic
CTCAATTTCTACCAGAAGCT+GGG 0.482229 tig0034089:-12380 Msa1452660:intergenic
GAAAGGCCAGGACTTCCATC+TGG 0.482564 tig0034089:-12330 Msa1452660:intergenic
GCCGTTGCTTCATATCGTTA+TGG 0.482878 tig0034089:-11539 Msa1452660:intergenic
GGACTGGGAGGTGGTGAACC+TGG 0.483464 tig0034089:-12291 Msa1452660:intergenic
GATGTGTTGATGTAGTGAAT+TGG 0.486051 tig0034089:+11409 Msa1452660:intron
GTTGAAACCCCTGGTGTTAG+CGG 0.487624 tig0034089:-11915 Msa1452660:intergenic
TCGCCAAAAGAAGGCTGTAC+AGG 0.491818 tig0034089:-12005 Msa1452660:intergenic
GTGGAGAAATGTCTGGAGTA+TGG 0.492945 tig0034089:+17853 Msa1452660:three_prime_UTR
GATGTGTTTGTGACCAAAAC+GGG 0.493665 tig0034089:+14457 Msa1452660:three_prime_UTR
CAAATTATCAGCAAGCTGTC+AGG 0.494856 tig0034089:+17787 Msa1452660:three_prime_UTR
GAATGTTGTGGAGAAATGTC+TGG 0.499195 tig0034089:+17846 Msa1452660:three_prime_UTR
CATTCGAAGCAAACTTATGC+TGG 0.502819 tig0034089:-17828 Msa1452660:intergenic
TCGATTTCGACTTACAAAGT+TGG 0.503724 tig0034089:+14507 Msa1452660:three_prime_UTR
ATAATTTGGCTCCTTTCTTG+AGG 0.504220 tig0034089:-17772 Msa1452660:intergenic
ATCTCACGAATGGCGGTGCT+AGG 0.506207 tig0034089:-11173 Msa1452660:intergenic
GGCTTTGTAATGTACTATCC+AGG 0.508549 tig0034089:+12273 Msa1452660:three_prime_UTR
AGCTATGCTCCGCTAACACC+AGG 0.511862 tig0034089:+11906 Msa1452660:three_prime_UTR
TTAATACTATCTGCATTTCG+TGG 0.512039 tig0034089:+14531 Msa1452660:three_prime_UTR
AAATTACATGAACAGAGAAC+TGG 0.512344 tig0034089:+12183 Msa1452660:three_prime_UTR
GGGTAACATAATTACCATAC+AGG 0.515883 tig0034089:-14756 Msa1452660:intergenic
ATACTGTATCCCTTCACAAA+AGG 0.515956 tig0034089:-12056 Msa1452660:intergenic
TATATCATTACAGCATGTGT+TGG 0.518674 tig0034089:+17738 Msa1452660:intron
AGGCATGGTATCTGGATGTA+TGG 0.520636 tig0034089:+12401 Msa1452660:three_prime_UTR
TCATACGGACTTCTTTGTTG+TGG 0.525056 tig0034089:-11570 Msa1452660:intergenic
AACAAATAAGCACCAGTACC+AGG 0.525629 tig0034089:-12153 Msa1452660:intergenic
CAGCTTGTTCGTGAGCTGGA+TGG 0.530950 tig0034089:+14423 Msa1452660:three_prime_UTR
GTAGCCCCATCAACAACAAA+TGG 0.531711 tig0034089:-11876 Msa1452660:intergenic
TAAATAGGATCGCCAAAAGA+AGG 0.534846 tig0034089:-12014 Msa1452660:intergenic
GGTTCAGTGTCAGTTTATTG+TGG 0.535825 tig0034089:+14696 Msa1452660:three_prime_UTR
TTTCTACCTCCTGAAAGGCC+AGG 0.536903 tig0034089:-12342 Msa1452660:intergenic
TACATGCGAACAAGTACCTT+GGG 0.537124 tig0034089:+11970 Msa1452660:three_prime_UTR
AATTAACACTTCCCGTTCAG+AGG 0.538629 tig0034089:-17881 Msa1452660:intergenic
TGGATGACTCGACAACCATA+AGG 0.542908 tig0034089:-14579 Msa1452660:intergenic
TACACTCCTCAATATGTTGG+TGG 0.549567 tig0034089:+11789 Msa1452660:three_prime_UTR
GTGTATCCACCAACATATTG+AGG 0.550135 tig0034089:-11795 Msa1452660:intergenic
GAAAGCATTGGTGTTCAAAG+AGG 0.551037 tig0034089:+12694 Msa1452660:three_prime_UTR
TTTCATTTCTACCTCCTGAA+AGG 0.551052 tig0034089:-12347 Msa1452660:intergenic
TGCCAGATTTCAACTCTGCA+AGG 0.551259 tig0034089:-12469 Msa1452660:intergenic
ATATCCAGACAAAACTGGAC+TGG 0.551778 tig0034089:-12307 Msa1452660:intergenic
GACAAAACTGGACTGGGAGG+TGG 0.552055 tig0034089:-12300 Msa1452660:intergenic
CCGATTACTGAAGTAGTGGC+TGG 0.553954 tig0034089:-11680 Msa1452660:intergenic
ACCTCCAGCTTTGATCAGCA+TGG 0.555398 tig0034089:+12626 Msa1452660:intron
TTTGGACATGTGCCAAACAC+GGG 0.555490 tig0034089:+12252 Msa1452660:three_prime_UTR
CCATACATCTGCAGACTCAA+AGG 0.558718 tig0034089:-12934 Msa1452660:intergenic
ATGGCTGCGTGTAATCCAAA+AGG 0.564091 tig0034089:+12953 Msa1452660:three_prime_UTR
ACATATTGTAGAATTTAGGC+AGG 0.565482 tig0034089:+12526 Msa1452660:three_prime_UTR
TAAGTTTGCTTCGAATGTTG+TGG 0.567052 tig0034089:+17834 Msa1452660:three_prime_UTR
CGATACACTCCTCAATATGT+TGG 0.567361 tig0034089:+11786 Msa1452660:three_prime_UTR
AGATGTGTTTGTGACCAAAA+CGG 0.568375 tig0034089:+14456 Msa1452660:three_prime_UTR
TATGTCCGTGCAGGCACTCG+AGG 0.569397 tig0034089:+14377 Msa1452660:intron
TTGCAGAGTTTGTGCAGACG+AGG 0.569430 tig0034089:+14675 Msa1452660:intron
TGCAGCATAGGAACATCGTT+AGG 0.570773 tig0034089:+11213 Msa1452660:CDS
ATGGAAACCCTTAGCAGAGG+AGG 0.571257 tig0034089:+12878 Msa1452660:three_prime_UTR
TGTCCAAAATAACTAGGAAA+CGG 0.572570 tig0034089:-12237 Msa1452660:intergenic
TTATGGTTGTCGAGTCATCC+AGG 0.572576 tig0034089:+14581 Msa1452660:three_prime_UTR
TGTACCATTTGTTGTTGATG+GGG 0.573810 tig0034089:+11872 Msa1452660:three_prime_UTR
TTTCTACCAGAAGCTGGGGA+AGG 0.581309 tig0034089:-12375 Msa1452660:intergenic
TCCATGCGAAATATTACCCC+CGG 0.584110 tig0034089:-11937 Msa1452660:intergenic
GGCACATGTCCAAAATAACT+AGG 0.584700 tig0034089:-12243 Msa1452660:intergenic
AGAGAGGTAGACCTCAAGAA+AGG 0.586564 tig0034089:+17761 Msa1452660:three_prime_UTR
CAACATATTGAGGAGTGTAT+CGG 0.587324 tig0034089:-11785 Msa1452660:intergenic
GAACTTGCAGATAAACTGGC+TGG 0.589605 tig0034089:+12901 Msa1452660:three_prime_UTR
TCGACTTGAACAGAAGATGA+AGG 0.590689 tig0034089:+11146 Msa1452660:exon
GTCATTAACTTAGAAGCATG+TGG 0.592971 tig0034089:-12722 Msa1452660:intergenic
GGGGTCTTGACCACTATCAA+AGG 0.596242 tig0034089:-12432 Msa1452660:intergenic
CAACAGAAGCTGGAAAGTTG+TGG 0.600199 tig0034089:+12662 Msa1452660:three_prime_UTR
AACTGCTTAAAGAAAGAGGA+AGG 0.600887 tig0034089:+11113 Msa1452660:five_prime_UTR
GTACATGCGAACAAGTACCT+TGG 0.606768 tig0034089:+11969 Msa1452660:three_prime_UTR
ATATATGGATGAACCGCGGT+GGG 0.607074 tig0034089:-11825 Msa1452660:intergenic
ATTTCTACATACCCTCCTCA+TGG 0.607245 tig0034089:+11846 Msa1452660:three_prime_UTR
GTATGGTAATTATGTTACCC+AGG 0.610531 tig0034089:+14759 Msa1452660:three_prime_UTR
ACACTTGCTATAGGTGCCTG+TGG 0.611170 tig0034089:-12095 Msa1452660:intergenic
AACACCAGGGGTTTCAACCG+GGG 0.611630 tig0034089:+11920 Msa1452660:three_prime_UTR
ACACTTTGAGAATTGGCACT+AGG 0.614613 tig0034089:-11597 Msa1452660:intergenic
ACACCAGGGGTTTCAACCGG+GGG 0.614681 tig0034089:+11921 Msa1452660:three_prime_UTR
TTGGCACTAGGAACTTCATA+CGG 0.614765 tig0034089:-11585 Msa1452660:intergenic
AGTGTACACCCTGCCTACGT+TGG 0.615923 tig0034089:+11615 Msa1452660:CDS
GTTCCCTGCCAACGTAGGCA+GGG 0.616500 tig0034089:-11623 Msa1452660:intergenic
TATCCAGACAAAACTGGACT+GGG 0.616787 tig0034089:-12306 Msa1452660:intergenic
GAGCAGCGAAATCTCACGAA+TGG 0.617623 tig0034089:-11183 Msa1452660:intergenic
ATTGTAAAATGGATTTACAG+AGG 0.617692 tig0034089:-11745 Msa1452660:intergenic
AGTATGGTGACGCCTCTGAA+CGG 0.619509 tig0034089:+17869 Msa1452660:three_prime_UTR
AGTATGAACTCAAGAAGAGG+TGG 0.619808 tig0034089:+12210 Msa1452660:three_prime_UTR
TGCTCAAAGAAATGCAGCAT+AGG 0.620366 tig0034089:+11201 Msa1452660:CDS
GGTCCAAGATCCTTTGATAG+TGG 0.623743 tig0034089:+12422 Msa1452660:three_prime_UTR
CAGCGAAATCTCACGAATGG+CGG 0.626334 tig0034089:-11180 Msa1452660:intergenic
TGGAAACCCTTAGCAGAGGA+GGG 0.626448 tig0034089:+12879 Msa1452660:three_prime_UTR
TTGAGGAGTGTATCGGCCTG+AGG 0.627359 tig0034089:-11778 Msa1452660:intergenic
AACCCCGATTACTGAAGTAG+TGG 0.629591 tig0034089:-11684 Msa1452660:intergenic
TTACAGCATGTGTTGGAGAG+AGG 0.630735 tig0034089:+17745 Msa1452660:intron
TTCTGGTAGAAATTGAGGCA+TGG 0.631228 tig0034089:+12386 Msa1452660:three_prime_UTR
GCAGAGTTGAAATCTGGCAA+AGG 0.632829 tig0034089:+12473 Msa1452660:three_prime_UTR
ACACCCTGCCTACGTTGGCA+GGG 0.639452 tig0034089:+11620 Msa1452660:CDS
AATGGTACAGCACCATGAGG+AGG 0.640193 tig0034089:-11858 Msa1452660:intergenic
CAAGGAAGTTAACAATCTTG+GGG 0.640570 tig0034089:-12451 Msa1452660:intergenic
TAACGATATGAAGCAACGGC+AGG 0.641212 tig0034089:+11542 Msa1452660:CDS
AGCCACTACTTCAGTAATCG+GGG 0.642698 tig0034089:+11682 Msa1452660:exon
ACCATAACGATATGAAGCAA+CGG 0.643877 tig0034089:+11538 Msa1452660:CDS
GGAAGTCCTGGCCTTTCAGG+AGG 0.646706 tig0034089:+12336 Msa1452660:three_prime_UTR
ATGGTACAGCACCATGAGGA+GGG 0.648488 tig0034089:-11857 Msa1452660:intergenic
CAGGAAATCCAAATTGCCCA+AGG 0.650207 tig0034089:-11986 Msa1452660:intergenic
GCTAGTATGAACTCAAGAAG+AGG 0.653600 tig0034089:+12207 Msa1452660:three_prime_UTR
CGGTAACTACGTGATACAGA+AGG 0.658396 tig0034089:+12754 Msa1452660:three_prime_UTR
TCAATTTCTACCAGAAGCTG+GGG 0.661184 tig0034089:-12379 Msa1452660:intergenic
CTATGCTCCGCTAACACCAG+GGG 0.662445 tig0034089:+11908 Msa1452660:three_prime_UTR
AAACTGTTCCCTGCCAACGT+AGG 0.667412 tig0034089:-11628 Msa1452660:intergenic
GCTGCTGTCGCATATAGGGT+AGG 0.668468 tig0034089:-11711 Msa1452660:intergenic
AATATATGGATGAACCGCGG+TGG 0.673680 tig0034089:-11826 Msa1452660:intergenic
CCAGACAAAACTGGACTGGG+AGG 0.676829 tig0034089:-12303 Msa1452660:intergenic
TGGTGCTGAAGAGAAAGCAT+TGG 0.685406 tig0034089:+12682 Msa1452660:three_prime_UTR
AGTATGGAAACCCTTAGCAG+AGG 0.688958 tig0034089:+12875 Msa1452660:three_prime_UTR
GCTATGCTCCGCTAACACCA+GGG 0.696961 tig0034089:+11907 Msa1452660:three_prime_UTR
TGAACGGGAAGTGTTAATTG+CGG 0.722208 tig0034089:+17885 Msa1452660:three_prime_UTR
ACAAATGGTACAGCACCATG+AGG 0.727165 tig0034089:-11861 Msa1452660:intergenic
AGAAATATATGGATGAACCG+CGG 0.765452 tig0034089:-11829 Msa1452660:intergenic
ATACACTTTAAATCCCACCG+CGG 0.835942 tig0034089:+11812 Msa1452660:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATTATATACCTTT+TGG - tig0034089:12971-12990 Msa1452660:intergenic 10.0%
!! AAGTAAAATTATGTATTTAT+TGG + tig0034089:13489-13508 Msa1452660:intron 10.0%
!! AGTAAAATTATGTATTTATT+GGG + tig0034089:13490-13509 Msa1452660:intron 10.0%
!!! AATTTGTGATTTTTATATTA+TGG - tig0034089:13603-13622 Msa1452660:intergenic 10.0%
!! AAGAAAATAAAGAAAAAATA+AGG + tig0034089:13901-13920 Msa1452660:intron 10.0%
!! AAAAAAATATAAAACAAAAC+AGG - tig0034089:16321-16340 Msa1452660:intergenic 10.0%
!! TACAATATGTTCAATTATAT+CGG - tig0034089:12516-12535 Msa1452660:intergenic 15.0%
!! GTAAAATTATGTATTTATTG+GGG + tig0034089:13491-13510 Msa1452660:intron 15.0%
!! TAAAATTATGTATTTATTGG+GGG + tig0034089:13492-13511 Msa1452660:intron 15.0%
!!! ATTTGTTAATAACATTTAAC+CGG - tig0034089:13800-13819 Msa1452660:intergenic 15.0%
!! AATAGAATTATAAATTTCTC+AGG - tig0034089:14190-14209 Msa1452660:intergenic 15.0%
!! TTTAATAGAAAACAAAAAAC+AGG - tig0034089:14256-14275 Msa1452660:intergenic 15.0%
!!! ATAATTTTATTATTAGCTTC+TGG + tig0034089:14809-14828 Msa1452660:intron 15.0%
!! TTCAAAAATAACAAATAAGT+AGG - tig0034089:15320-15339 Msa1452660:intergenic 15.0%
!! ATAAAATACAAACAGAATAT+GGG - tig0034089:16345-16364 Msa1452660:intergenic 15.0%
!!! AAGATTAGAAATATTTTCAA+AGG - tig0034089:17013-17032 Msa1452660:intergenic 15.0%
!! TATTATCTATAAAAAATCGT+TGG + tig0034089:17053-17072 Msa1452660:intron 15.0%
!!! ATGTATTTGTGTTTTATTTA+CGG + tig0034089:17170-17189 Msa1452660:intron 15.0%
!!! GGAATTTTTTGAAAAAATAT+TGG - tig0034089:17304-17323 Msa1452660:intergenic 15.0%
!! TCAAAAAAAATTAAAAGAGT+AGG - tig0034089:17619-17638 Msa1452660:intergenic 15.0%
!!! TCCATTTTACAATAATATTC+AGG + tig0034089:11755-11774 Msa1452660:three_prime_UTR 20.0%
!! TGATTAAATTGCATGTAAAT+AGG - tig0034089:12032-12051 Msa1452660:intergenic 20.0%
!! TTGAACATATTGTAGAATTT+AGG + tig0034089:12522-12541 Msa1452660:three_prime_UTR 20.0%
!! GAATGCTATTGTTTAAATTA+TGG + tig0034089:13932-13951 Msa1452660:intron 20.0%
!! TCTATTAAATCAAGATTGTT+TGG + tig0034089:14267-14286 Msa1452660:intron 20.0%
!! GTTTCTTAAAAAGTAGATAA+GGG - tig0034089:15218-15237 Msa1452660:intergenic 20.0%
!! AGTTTCTTAAAAAGTAGATA+AGG - tig0034089:15219-15238 Msa1452660:intergenic 20.0%
!!! TTGAGCTATTAAAAGTATAA+TGG + tig0034089:15445-15464 Msa1452660:intron 20.0%
!! AGGAAACCAATAAAAATTAT+AGG + tig0034089:15562-15581 Msa1452660:intron 20.0%
!!! GTTTGACCTATAATTTTTAT+TGG - tig0034089:15571-15590 Msa1452660:intergenic 20.0%
!!! CATGATTAGTTATTAGAATT+AGG + tig0034089:15603-15622 Msa1452660:intron 20.0%
!! AACATAAGAAGAAGAAAAAT+AGG - tig0034089:16254-16273 Msa1452660:intergenic 20.0%
!! ATAGAAAAACTTGAAGAAAT+AGG - tig0034089:16277-16296 Msa1452660:intergenic 20.0%
!! CATAAAATACAAACAGAATA+TGG - tig0034089:16346-16365 Msa1452660:intergenic 20.0%
!! ATACAAACAGAACATAAAAA+GGG - tig0034089:16560-16579 Msa1452660:intergenic 20.0%
!! AATACAAACAGAACATAAAA+AGG - tig0034089:16366-16385 Msa1452660:intergenic 20.0%
!!! GTTGCTATTTGATAATTTTT+TGG - tig0034089:16743-16762 Msa1452660:intergenic 20.0%
!! TAGAAACCAACATAAAATAT+AGG - tig0034089:16822-16841 Msa1452660:intergenic 20.0%
!!! TATTTTATGTTGGTTTCTAA+TGG + tig0034089:16823-16842 Msa1452660:intron 20.0%
!! AAAAATATTGGCATATGAAA+GGG - tig0034089:17292-17311 Msa1452660:intergenic 20.0%
!! AAAAAATATTGGCATATGAA+AGG - tig0034089:17293-17312 Msa1452660:intergenic 20.0%
!!! TTTTTTCAAAAAATTCCCTA+AGG + tig0034089:17307-17326 Msa1452660:intron 20.0%
! ATTAAACTGCTTAAAGAAAG+AGG + tig0034089:11109-11128 Msa1452660:five_prime_UTR 25.0%
!! TCAATTTTACTTCATAACTC+AGG - tig0034089:11509-11528 Msa1452660:intergenic 25.0%
!! ATTGTAAAATGGATTTACAG+AGG - tig0034089:11748-11767 Msa1452660:intergenic 25.0%
! GCCTGAATATTATTGTAAAA+TGG - tig0034089:11759-11778 Msa1452660:intergenic 25.0%
! TCCTTATGATTCACAAAAAA+AGG + tig0034089:12130-12149 Msa1452660:three_prime_UTR 25.0%
! AAGTTAATGACTGATGTATT+CGG + tig0034089:12734-12753 Msa1452660:three_prime_UTR 25.0%
! AAATTAGACCAAAACAGATT+CGG - tig0034089:12827-12846 Msa1452660:intergenic 25.0%
! AAAACTAAACACATGAGAAA+GGG - tig0034089:12852-12871 Msa1452660:intergenic 25.0%
! AAAAACTAAACACATGAGAA+AGG - tig0034089:12853-12872 Msa1452660:intergenic 25.0%
!! AGATTGTCATTTGAGAAAAT+TGG - tig0034089:13209-13228 Msa1452660:intergenic 25.0%
!!! TACTTTTATAGTCAAGTTGT+AGG + tig0034089:13356-13375 Msa1452660:intron 25.0%
!! GTCTACATTTAATCTTTTCT+TGG - tig0034089:13536-13555 Msa1452660:intergenic 25.0%
! GTTAAATAATATGCTCACTA+TGG + tig0034089:13564-13583 Msa1452660:intron 25.0%
! TGATAAACCTGTATGTTTAA+GGG + tig0034089:13639-13658 Msa1452660:intron 25.0%
!! TAATATAAGTTGAACTGTTG+TGG + tig0034089:13822-13841 Msa1452660:intron 25.0%
! ACTTTCTATCATATAATCAG+TGG + tig0034089:13847-13866 Msa1452660:intron 25.0%
!!! CTTTTCAAAAGTGTGATTTT+GGG - tig0034089:13884-13903 Msa1452660:intergenic 25.0%
!!! TCTTTTCAAAAGTGTGATTT+TGG - tig0034089:13885-13904 Msa1452660:intergenic 25.0%
!!! TTTTTTTCAAGACGTTGAAT+TGG - tig0034089:13997-14016 Msa1452660:intergenic 25.0%
!!! TTTTTTTTCCTGATACTATG+AGG + tig0034089:14114-14133 Msa1452660:intron 25.0%
! CAATAGAATACTTGTCTTAT+AGG - tig0034089:14327-14346 Msa1452660:intergenic 25.0%
! AATTTATCAATGCATCCTTA+TGG + tig0034089:14564-14583 Msa1452660:three_prime_UTR 25.0%
! ACAAAAAGAAACTTCATTTC+AGG - tig0034089:14628-14647 Msa1452660:intergenic 25.0%
! TGAGAAAGAAGATATATAGT+TGG + tig0034089:14847-14866 Msa1452660:intron 25.0%
! AAATTCACAGAAAGAAGAAT+TGG - tig0034089:15028-15047 Msa1452660:intergenic 25.0%
! AGGTTCTTAAAAAGTAGATA+AGG - tig0034089:15243-15262 Msa1452660:intergenic 25.0%
! TGAAATTGTCTTATCCTATA+CGG + tig0034089:15340-15359 Msa1452660:intron 25.0%
! ATGAACAGGTCTAAATTTAT+TGG - tig0034089:15392-15411 Msa1452660:intergenic 25.0%
!! ACAAGTGATTTCAATTTTGA+TGG + tig0034089:15416-15435 Msa1452660:intron 25.0%
!! AAAAGTATAATGGCATACAA+TGG + tig0034089:15455-15474 Msa1452660:intron 25.0%
! ACTAATCATGTATATTCTTG+CGG - tig0034089:15593-15612 Msa1452660:intergenic 25.0%
!!! CTAATTTTTAAGGAGCAAAA+TGG - tig0034089:15938-15957 Msa1452660:intergenic 25.0%
! CTTAAAAATTAGACTTCAGT+GGG + tig0034089:15946-15965 Msa1452660:intron 25.0%
! TTAAAAATTAGACTTCAGTG+GGG + tig0034089:15947-15966 Msa1452660:intron 25.0%
!!! ATGTTCTGTTTGTATTTTTG+AGG + tig0034089:16370-16389 Msa1452660:intron 25.0%
!!! TGTTCTGTTTGTATTTTTGA+GGG + tig0034089:16371-16390 Msa1452660:intron 25.0%
! AGCAATAAAAAGTCATAACA+GGG - tig0034089:16638-16657 Msa1452660:intergenic 25.0%
! AAGCAATAAAAAGTCATAAC+AGG - tig0034089:16639-16658 Msa1452660:intergenic 25.0%
!! TGACTACCTATATTTTATGT+TGG + tig0034089:16813-16832 Msa1452660:intron 25.0%
!! GCAAAATATGCTATTTATGA+GGG - tig0034089:16991-17010 Msa1452660:intergenic 25.0%
!! ATTTGAACAACACTTGCTAT+AGG - tig0034089:12107-12126 Msa1452660:intergenic 30.0%
!!! GCCTTTTTTTGTGAATCATA+AGG - tig0034089:12134-12153 Msa1452660:intergenic 30.0%
AAATTACATGAACAGAGAAC+TGG + tig0034089:12183-12202 Msa1452660:three_prime_UTR 30.0%
TGTCCAAAATAACTAGGAAA+CGG - tig0034089:12240-12259 Msa1452660:intergenic 30.0%
ACATATTGTAGAATTTAGGC+AGG + tig0034089:12526-12545 Msa1452660:three_prime_UTR 30.0%
! AAGAATCTCATCGATTAGAT+AGG - tig0034089:12575-12594 Msa1452660:intergenic 30.0%
TATCTAATCGATGAGATTCT+TGG + tig0034089:12574-12593 Msa1452660:intron 30.0%
AATTAGACCAAAACAGATTC+GGG - tig0034089:12826-12845 Msa1452660:intergenic 30.0%
!!! TGTGTTTAGTTTTTCGAGTA+TGG + tig0034089:12859-12878 Msa1452660:intron 30.0%
CTGAATTTCAAATGATCTGA+AGG - tig0034089:13138-13157 Msa1452660:intergenic 30.0%
GTTGTAATAAAAGGCAAACT+GGG - tig0034089:13249-13268 Msa1452660:intergenic 30.0%
TGTTGTAATAAAAGGCAAAC+TGG - tig0034089:13250-13269 Msa1452660:intergenic 30.0%
!! ATTTATTGGGGGCTTTATTA+TGG + tig0034089:13503-13522 Msa1452660:intron 30.0%
CTGATAAACCTGTATGTTTA+AGG + tig0034089:13638-13657 Msa1452660:intron 30.0%
GATAAACCTGTATGTTTAAG+GGG + tig0034089:13640-13659 Msa1452660:intron 30.0%
TATAACCATAAGCAACAGAA+AGG - tig0034089:13777-13796 Msa1452660:intergenic 30.0%
AAGAAAAAATAAGGCCAACT+TGG + tig0034089:13910-13929 Msa1452660:intron 30.0%
TAAACAATAGCATTCCAAGT+TGG - tig0034089:13927-13946 Msa1452660:intergenic 30.0%
TATGGAAAACAACAACATGT+TGG + tig0034089:13950-13969 Msa1452660:intron 30.0%
TGCAACAAAACTGTATACAT+GGG - tig0034089:14073-14092 Msa1452660:intergenic 30.0%
ATGCAACAAAACTGTATACA+TGG - tig0034089:14074-14093 Msa1452660:intergenic 30.0%
GTAATTGCATAATTCAGAGT+TGG + tig0034089:14219-14238 Msa1452660:intron 30.0%
TTAATACTATCTGCATTTCG+TGG + tig0034089:14531-14550 Msa1452660:three_prime_UTR 30.0%
AAGAAACTTCATTTCAGGAA+AGG - tig0034089:14623-14642 Msa1452660:intergenic 30.0%
! TTTTGTGCTATGCATTAAGT+AGG + tig0034089:14642-14661 Msa1452660:intron 30.0%
GTTTATTGTGGATGAAATCT+TGG + tig0034089:14708-14727 Msa1452660:three_prime_UTR 30.0%
! ATTATTAGCTTCTGGTGTTT+CGG + tig0034089:14817-14836 Msa1452660:intron 30.0%
GAAAGAAGATATATAGTTGG+AGG + tig0034089:14850-14869 Msa1452660:intron 30.0%
! GAAAATAGCATGATTTGTGA+CGG + tig0034089:14950-14969 Msa1452660:intron 30.0%
CGCTAACAAAAGATTCAAAA+GGG - tig0034089:15060-15079 Msa1452660:intergenic 30.0%
! CCTTTTGAATCTTTTGTTAG+CGG + tig0034089:15058-15077 Msa1452660:intron 30.0%
TCCTTGTGATGGTTAAATTT+GGG - tig0034089:15107-15126 Msa1452660:intergenic 30.0%
GATAAGGGAGTTTCTTAAAA+AGG - tig0034089:15203-15222 Msa1452660:intergenic 30.0%
! AAAGTGTTAGCTTCAAACAA+GGG - tig0034089:15266-15285 Msa1452660:intergenic 30.0%
!! AAAAGTGTTAGCTTCAAACA+AGG - tig0034089:15267-15286 Msa1452660:intergenic 30.0%
TTCAGCAATACTTATTTGTG+AGG + tig0034089:15291-15310 Msa1452660:intron 30.0%
AATCACTTGTACAAATGAAC+AGG - tig0034089:15406-15425 Msa1452660:intergenic 30.0%
!! ATTGGCTTTAGAGAAGTAAA+GGG + tig0034089:15500-15519 Msa1452660:intron 30.0%
AACCAAAATAGGAAAAGTAG+AGG + tig0034089:15542-15561 Msa1452660:intron 30.0%
!! TTCCTCTACTTTTCCTATTT+TGG - tig0034089:15547-15566 Msa1452660:intergenic 30.0%
!! TAATAGGAAAAGGTACTACT+TGG + tig0034089:15659-15678 Msa1452660:intron 30.0%
!! AATAGGAAAAGGTACTACTT+GGG + tig0034089:15660-15679 Msa1452660:intron 30.0%
! TACTTGGGTTGTAATAATGA+TGG + tig0034089:15675-15694 Msa1452660:intron 30.0%
!! ATTGTTTGGTGTTTACAAGT+GGG + tig0034089:15707-15726 Msa1452660:intron 30.0%
TTGCATAGAATTGTTCAATG+TGG - tig0034089:15741-15760 Msa1452660:intergenic 30.0%
ACATTGAACAATTCTATGCA+AGG + tig0034089:15740-15759 Msa1452660:intron 30.0%
! CCACTGAAGTCTAATTTTTA+AGG - tig0034089:15948-15967 Msa1452660:intergenic 30.0%
CCTTAAAAATTAGACTTCAG+TGG + tig0034089:15945-15964 Msa1452660:intron 30.0%
AAGAAGAAAAATAGGAACAG+AGG - tig0034089:16246-16265 Msa1452660:intergenic 30.0%
!! GTTCTGTTTGTATTTTTGAG+GGG + tig0034089:16372-16391 Msa1452660:intron 30.0%
TTGTGTAAAAAAACAGGGTA+AGG + tig0034089:16460-16479 Msa1452660:intron 30.0%
AATAAAAAGTCATAACAGGG+GGG - tig0034089:16635-16654 Msa1452660:intergenic 30.0%
CAATAAAAAGTCATAACAGG+GGG - tig0034089:16636-16655 Msa1452660:intergenic 30.0%
GCAATAAAAAGTCATAACAG+GGG - tig0034089:16637-16656 Msa1452660:intergenic 30.0%
CTAAGCAAATAACTCAAAAC+TGG - tig0034089:16677-16696 Msa1452660:intergenic 30.0%
! GAAACCTCTTCATTTTATCT+GGG + tig0034089:16845-16864 Msa1452660:intron 30.0%
! GGCAAAATATGCTATTTATG+AGG - tig0034089:16992-17011 Msa1452660:intergenic 30.0%
ATCTACATCAAATCAAGCAT+CGG - tig0034089:17213-17232 Msa1452660:intergenic 30.0%
TGGATGAAATAGAGGAAAAT+GGG + tig0034089:17391-17410 Msa1452660:intron 30.0%
GAACCAAAAAATTGTATTGG+AGG + tig0034089:17473-17492 Msa1452660:intron 30.0%
ACACATGCTGTAATGATATA+AGG - tig0034089:17738-17757 Msa1452660:intergenic 30.0%
TATATCATTACAGCATGTGT+TGG + tig0034089:17738-17757 Msa1452660:intron 30.0%
AACTGCTTAAAGAAAGAGGA+AGG + tig0034089:11113-11132 Msa1452660:five_prime_UTR 35.0%
! GATGTGTTGATGTAGTGAAT+TGG + tig0034089:11409-11428 Msa1452660:intron 35.0%
TAACTCAGGCTTTCAGAATT+TGG - tig0034089:11495-11514 Msa1452660:intergenic 35.0%
ACCATAACGATATGAAGCAA+CGG + tig0034089:11538-11557 Msa1452660:CDS 35.0%
TACAATAATATTCAGGCCTC+AGG + tig0034089:11762-11781 Msa1452660:three_prime_UTR 35.0%
! CAACATATTGAGGAGTGTAT+CGG - tig0034089:11788-11807 Msa1452660:intergenic 35.0%
AGAAATATATGGATGAACCG+CGG - tig0034089:11832-11851 Msa1452660:intergenic 35.0%
! GGAGGGTATGTAGAAATATA+TGG - tig0034089:11843-11862 Msa1452660:intergenic 35.0%
!! CTGTACCATTTGTTGTTGAT+GGG + tig0034089:11871-11890 Msa1452660:three_prime_UTR 35.0%
!! TGTACCATTTGTTGTTGATG+GGG + tig0034089:11872-11891 Msa1452660:three_prime_UTR 35.0%
TAAATAGGATCGCCAAAAGA+AGG - tig0034089:12017-12036 Msa1452660:intergenic 35.0%
! TAATCAGCAACCTTTTGTGA+AGG + tig0034089:12046-12065 Msa1452660:three_prime_UTR 35.0%
! AATCAGCAACCTTTTGTGAA+GGG + tig0034089:12047-12066 Msa1452660:three_prime_UTR 35.0%
ATACTGTATCCCTTCACAAA+AGG - tig0034089:12059-12078 Msa1452660:intergenic 35.0%
ATGATTCACAAAAAAAGGCC+TGG + tig0034089:12135-12154 Msa1452660:three_prime_UTR 35.0%
TTTCATTTCTACCTCCTGAA+AGG - tig0034089:12350-12369 Msa1452660:intergenic 35.0%
CAAGGAAGTTAACAATCTTG+GGG - tig0034089:12454-12473 Msa1452660:intergenic 35.0%
GCAAGGAAGTTAACAATCTT+GGG - tig0034089:12455-12474 Msa1452660:intergenic 35.0%
TGCAAGGAAGTTAACAATCT+TGG - tig0034089:12456-12475 Msa1452660:intergenic 35.0%
! AATCTCATCGATTAGATAGG+TGG - tig0034089:12572-12591 Msa1452660:intergenic 35.0%
! ATCGATGAGATTCTTGGTTT+TGG + tig0034089:12580-12599 Msa1452660:intron 35.0%
TCGATTTATACAACAGAAGC+TGG + tig0034089:12652-12671 Msa1452660:three_prime_UTR 35.0%
! GTCATTAACTTAGAAGCATG+TGG - tig0034089:12725-12744 Msa1452660:intergenic 35.0%
GGGGGCAAACATAAAATTAA+CGG - tig0034089:12806-12825 Msa1452660:intergenic 35.0%
ATTAGACCAAAACAGATTCG+GGG - tig0034089:12825-12844 Msa1452660:intergenic 35.0%
ATTTCACCAGTATGCTTGAT+AGG + tig0034089:13025-13044 Msa1452660:intron 35.0%
TCATAACCTATCAAGCATAC+TGG - tig0034089:13034-13053 Msa1452660:intergenic 35.0%
! TCCATTTTCACAACCTAGTT+GGG + tig0034089:13174-13193 Msa1452660:intron 35.0%
TAATAAAAGGCAAACTGGGT+CGG - tig0034089:13245-13264 Msa1452660:intergenic 35.0%
!! GTGCTGGTTGTTGTAATAAA+AGG - tig0034089:13258-13277 Msa1452660:intergenic 35.0%
! TTTTATAAACTCTTCCCCAC+AGG - tig0034089:13280-13299 Msa1452660:intergenic 35.0%
AACTAACCCCTTAAACATAC+AGG - tig0034089:13649-13668 Msa1452660:intergenic 35.0%
! TGTATGTTTAAGGGGTTAGT+TGG + tig0034089:13648-13667 Msa1452660:intron 35.0%
!! GTATGTTTAAGGGGTTAGTT+GGG + tig0034089:13649-13668 Msa1452660:intron 35.0%
! GATTACCTTTCTGTTGCTTA+TGG + tig0034089:13769-13788 Msa1452660:intron 35.0%
! TCTGTTGCTTATGGTTATAC+CGG + tig0034089:13778-13797 Msa1452660:intron 35.0%
CAAGACGTTGAATTGGAAAA+CGG - tig0034089:13990-14009 Msa1452660:intergenic 35.0%
!! GTTTTGTTGCATGCACTTTT+TGG + tig0034089:14082-14101 Msa1452660:intron 35.0%
ATTGCATAATTCAGAGTTGG+TGG + tig0034089:14222-14241 Msa1452660:intron 35.0%
!!! TATTTGTTTTATGTCCGTGC+AGG + tig0034089:14368-14387 Msa1452660:intron 35.0%
AGATGTGTTTGTGACCAAAA+CGG + tig0034089:14456-14475 Msa1452660:three_prime_UTR 35.0%
! GTATTACATGATTCCCGTTT+TGG - tig0034089:14473-14492 Msa1452660:intergenic 35.0%
TCGATTTCGACTTACAAAGT+TGG + tig0034089:14507-14526 Msa1452660:three_prime_UTR 35.0%
GGGTAACATAATTACCATAC+AGG - tig0034089:14759-14778 Msa1452660:intergenic 35.0%
GTATGGTAATTATGTTACCC+AGG + tig0034089:14759-14778 Msa1452660:three_prime_UTR 35.0%
! TTATTAGCTTCTGGTGTTTC+GGG + tig0034089:14818-14837 Msa1452660:intron 35.0%
ACCATAAGCTACAGATAGAA+CGG - tig0034089:14894-14913 Msa1452660:intergenic 35.0%
CAAAAGATTCAAAAGGGCTT+AGG - tig0034089:15054-15073 Msa1452660:intergenic 35.0%
CCGCTAACAAAAGATTCAAA+AGG - tig0034089:15061-15080 Msa1452660:intergenic 35.0%
ATGGTTAAATTTGGGAACAG+AGG - tig0034089:15099-15118 Msa1452660:intergenic 35.0%
TCCCAAATTTAACCATCACA+AGG + tig0034089:15103-15122 Msa1452660:intron 35.0%
CTCCTTGTGATGGTTAAATT+TGG - tig0034089:15108-15127 Msa1452660:intergenic 35.0%
TAGTACAAAACTCCTTGTGA+TGG - tig0034089:15118-15137 Msa1452660:intergenic 35.0%
GGAGTTTCTTAAAAAGGTTC+TGG - tig0034089:15197-15216 Msa1452660:intergenic 35.0%
!! GATTGGCTTTAGAGAAGTAA+AGG + tig0034089:15499-15518 Msa1452660:intron 35.0%
TATGACATCATTTGTCCTTG+TGG + tig0034089:15629-15648 Msa1452660:intron 35.0%
! GTACCTTTTCCTATTAGTGA+AGG - tig0034089:15655-15674 Msa1452660:intergenic 35.0%
GATGGTTTACAGTGATTGTT+TGG + tig0034089:15693-15712 Msa1452660:intron 35.0%
!! GATTGTTTGGTGTTTACAAG+TGG + tig0034089:15706-15725 Msa1452660:intron 35.0%
AAACTGGAAAAAACAGAACC+TGG - tig0034089:16159-16178 Msa1452660:intergenic 35.0%
AACAGGAATAGAAGAACAGT+GGG - tig0034089:16304-16323 Msa1452660:intergenic 35.0%
AAACAGGAATAGAAGAACAG+TGG - tig0034089:16305-16324 Msa1452660:intergenic 35.0%
AAAGTTGTTGTCATGTGACT+CGG + tig0034089:16414-16433 Msa1452660:intron 35.0%
AGCCTCTTGTGTAAAAAAAC+AGG + tig0034089:16454-16473 Msa1452660:intron 35.0%
GCCTCTTGTGTAAAAAAACA+GGG + tig0034089:16455-16474 Msa1452660:intron 35.0%
!!! ACCCTGTTTTTTTACACAAG+AGG - tig0034089:16459-16478 Msa1452660:intergenic 35.0%
AAAACAGAGAGAAGGTTGAA+GGG - tig0034089:16606-16625 Msa1452660:intergenic 35.0%
TAAAACAGAGAGAAGGTTGA+AGG - tig0034089:16607-16626 Msa1452660:intergenic 35.0%
GGAAAGATAAAACAGAGAGA+AGG - tig0034089:16614-16633 Msa1452660:intergenic 35.0%
! GGAAACCTCTTCATTTTATC+TGG + tig0034089:16844-16863 Msa1452660:intron 35.0%
! TCTTCATTTTATCTGGGCTT+GGG + tig0034089:16851-16870 Msa1452660:intron 35.0%
! TTTTTCGTTGCATGGCTTAA+GGG + tig0034089:17100-17119 Msa1452660:intron 35.0%
ACTCTCAAATGAAAATGCCA+GGG - tig0034089:17150-17169 Msa1452660:intergenic 35.0%
TACTCTCAAATGAAAATGCC+AGG - tig0034089:17151-17170 Msa1452660:intergenic 35.0%
TCTACATCAAATCAAGCATC+GGG - tig0034089:17212-17231 Msa1452660:intergenic 35.0%
!!! ACTACTTTTGACTTTGACTC+TGG + tig0034089:17247-17266 Msa1452660:intron 35.0%
GTGGATGAAATAGAGGAAAA+TGG + tig0034089:17390-17409 Msa1452660:intron 35.0%
ATGAAATAGAGGAAAATGGG+AGG + tig0034089:17394-17413 Msa1452660:intron 35.0%
TGAAATAGAGGAAAATGGGA+GGG + tig0034089:17395-17414 Msa1452660:intron 35.0%
AATACTAAACCCTCCTCATT+TGG + tig0034089:17448-17467 Msa1452660:intron 35.0%
ATACTAAACCCTCCTCATTT+GGG + tig0034089:17449-17468 Msa1452660:intron 35.0%
GGGGAACCAAAAAATTGTAT+TGG + tig0034089:17470-17489 Msa1452660:intron 35.0%
!!! CCTCCTCCAATACAATTTTT+TGG - tig0034089:17479-17498 Msa1452660:intergenic 35.0%
CCAAAAAATTGTATTGGAGG+AGG + tig0034089:17476-17495 Msa1452660:intron 35.0%
! ATTGTATTGGAGGAGGTTTT+TGG + tig0034089:17483-17502 Msa1452660:intron 35.0%
! TTGTATTGGAGGAGGTTTTT+GGG + tig0034089:17484-17503 Msa1452660:intron 35.0%
GTGGAAAATATGACGAGAAA+TGG - tig0034089:17651-17670 Msa1452660:intergenic 35.0%
! TAAGGAAAGCACAGTTACTT+AGG - tig0034089:17720-17739 Msa1452660:intergenic 35.0%
! ATAATTTGGCTCCTTTCTTG+AGG - tig0034089:17775-17794 Msa1452660:intergenic 35.0%
! TAAGTTTGCTTCGAATGTTG+TGG + tig0034089:17834-17853 Msa1452660:three_prime_UTR 35.0%
! TCGACTTGAACAGAAGATGA+AGG + tig0034089:11146-11165 Msa1452660:exon 40.0%
TGCTCAAAGAAATGCAGCAT+AGG + tig0034089:11201-11220 Msa1452660:CDS 40.0%
CTTCATATCGTTATGGTAGC+TGG - tig0034089:11535-11554 Msa1452660:intergenic 40.0%
! CATACGGACTTCTTTGTTGT+GGG - tig0034089:11572-11591 Msa1452660:intergenic 40.0%
TCATACGGACTTCTTTGTTG+TGG - tig0034089:11573-11592 Msa1452660:intergenic 40.0%
TTGGCACTAGGAACTTCATA+CGG - tig0034089:11588-11607 Msa1452660:intergenic 40.0%
! ACACTTTGAGAATTGGCACT+AGG - tig0034089:11600-11619 Msa1452660:intergenic 40.0%
! AGGGTGTACACTTTGAGAAT+TGG - tig0034089:11607-11626 Msa1452660:intergenic 40.0%
! GGCAACTTGCTTGAATTATG+AGG - tig0034089:11654-11673 Msa1452660:intergenic 40.0%
CGATACACTCCTCAATATGT+TGG + tig0034089:11786-11805 Msa1452660:three_prime_UTR 40.0%
TACACTCCTCAATATGTTGG+TGG + tig0034089:11789-11808 Msa1452660:three_prime_UTR 40.0%
GTGTATCCACCAACATATTG+AGG - tig0034089:11798-11817 Msa1452660:intergenic 40.0%
ATACACTTTAAATCCCACCG+CGG + tig0034089:11812-11831 Msa1452660:three_prime_UTR 40.0%
ATTTCTACATACCCTCCTCA+TGG + tig0034089:11846-11865 Msa1452660:three_prime_UTR 40.0%
!! GCTGTACCATTTGTTGTTGA+TGG + tig0034089:11870-11889 Msa1452660:three_prime_UTR 40.0%
TATTTCGCATGGAGCTGAAA+TGG + tig0034089:11947-11966 Msa1452660:three_prime_UTR 40.0%
TACATGCGAACAAGTACCTT+GGG + tig0034089:11970-11989 Msa1452660:three_prime_UTR 40.0%
AACAAGTACCTTGGGCAATT+TGG + tig0034089:11978-11997 Msa1452660:three_prime_UTR 40.0%
! TTTCCTGTACAGCCTTCTTT+TGG + tig0034089:12002-12021 Msa1452660:three_prime_UTR 40.0%
GTGAAGGGATACAGTATTTC+TGG + tig0034089:12062-12081 Msa1452660:three_prime_UTR 40.0%
!! TTCTGGTCATTTTGATCCAC+AGG + tig0034089:12079-12098 Msa1452660:three_prime_UTR 40.0%
AACAAATAAGCACCAGTACC+AGG - tig0034089:12156-12175 Msa1452660:intergenic 40.0%
GCTAGTATGAACTCAAGAAG+AGG + tig0034089:12207-12226 Msa1452660:three_prime_UTR 40.0%
AGTATGAACTCAAGAAGAGG+TGG + tig0034089:12210-12229 Msa1452660:three_prime_UTR 40.0%
!! CTGCCGTTTCCTAGTTATTT+TGG + tig0034089:12234-12253 Msa1452660:three_prime_UTR 40.0%
GGCACATGTCCAAAATAACT+AGG - tig0034089:12246-12265 Msa1452660:intergenic 40.0%
! TTTTGGACATGTGCCAAACA+CGG + tig0034089:12251-12270 Msa1452660:three_prime_UTR 40.0%
TACATTACAAAGCCCGTGTT+TGG - tig0034089:12267-12286 Msa1452660:intergenic 40.0%
! GGCTTTGTAATGTACTATCC+AGG + tig0034089:12273-12292 Msa1452660:three_prime_UTR 40.0%
TATCCAGACAAAACTGGACT+GGG - tig0034089:12309-12328 Msa1452660:intergenic 40.0%
ATATCCAGACAAAACTGGAC+TGG - tig0034089:12310-12329 Msa1452660:intergenic 40.0%
TCTGGATATCCAGACAAAAC+TGG - tig0034089:12315-12334 Msa1452660:intergenic 40.0%
! GTTTTGTCTGGATATCCAGA+TGG + tig0034089:12315-12334 Msa1452660:three_prime_UTR 40.0%
TCAATTTCTACCAGAAGCTG+GGG - tig0034089:12382-12401 Msa1452660:intergenic 40.0%
CTCAATTTCTACCAGAAGCT+GGG - tig0034089:12383-12402 Msa1452660:intergenic 40.0%
TTCTGGTAGAAATTGAGGCA+TGG + tig0034089:12386-12405 Msa1452660:three_prime_UTR 40.0%
AGAAATTGAGGCATGGTATC+TGG + tig0034089:12393-12412 Msa1452660:three_prime_UTR 40.0%
TGACCACTATCAAAGGATCT+TGG - tig0034089:12428-12447 Msa1452660:intergenic 40.0%
TTCCTTGCAGAGTTGAAATC+TGG + tig0034089:12467-12486 Msa1452660:three_prime_UTR 40.0%
!! GAAAGCATTGGTGTTCAAAG+AGG + tig0034089:12694-12713 Msa1452660:three_prime_UTR 40.0%
TTAGACCAAAACAGATTCGG+GGG - tig0034089:12824-12843 Msa1452660:intergenic 40.0%
! GTCCATTTTCACAACCTAGT+TGG + tig0034089:13173-13192 Msa1452660:intron 40.0%
GTCTGCAACTCTGAACAAAT+TGG - tig0034089:13393-13412 Msa1452660:intergenic 40.0%
!!! CTGTTTTTGTTCTGCAGGTA+GGG + tig0034089:13707-13726 Msa1452660:intron 40.0%
!!! GGGTTGAGTTTTTTTTGCCT+CGG + tig0034089:14047-14066 Msa1452660:intron 40.0%
AATCTACGCCTCATAGTATC+AGG - tig0034089:14125-14144 Msa1452660:intergenic 40.0%
GATGTGTTTGTGACCAAAAC+GGG + tig0034089:14457-14476 Msa1452660:three_prime_UTR 40.0%
GGCAAAGCAATAACTATACC+TGG - tig0034089:14602-14621 Msa1452660:intergenic 40.0%
GGTTCAGTGTCAGTTTATTG+TGG + tig0034089:14696-14715 Msa1452660:three_prime_UTR 40.0%
TCCGTTCTATCTGTAGCTTA+TGG + tig0034089:14890-14909 Msa1452660:intron 40.0%
CCTGTCACAGCAATTTCATA+GGG - tig0034089:14931-14950 Msa1452660:intergenic 40.0%
TCCTGTCACAGCAATTTCAT+AGG - tig0034089:14932-14951 Msa1452660:intergenic 40.0%
ATTGTCTTATCCTATACGGC+TGG + tig0034089:15344-15363 Msa1452660:intron 40.0%
! ATACAATGGTGTGCTTTGAG+AGG + tig0034089:15469-15488 Msa1452660:intron 40.0%
!! CTTTGAGAGGTATTGCAGAT+TGG + tig0034089:15482-15501 Msa1452660:intron 40.0%
CACGTTCAAGCAACCAAAAT+AGG + tig0034089:15531-15550 Msa1452660:intron 40.0%
TGGCCTTCACTAATAGGAAA+AGG + tig0034089:15649-15668 Msa1452660:intron 40.0%
CTATGCAAGGTAGTCAATTG+CGG + tig0034089:15753-15772 Msa1452660:intron 40.0%
ATTAAAGTTGCAGCCGCAAT+AGG + tig0034089:15848-15867 Msa1452660:intron 40.0%
! GCAGTTAGTTTGAAGGAAGA+AGG - tig0034089:16032-16051 Msa1452660:intergenic 40.0%
TTGGAATAGAGAAACAGAGC+AGG - tig0034089:16210-16229 Msa1452660:intergenic 40.0%
CAGAGGAAAACTGTAGGATT+TGG - tig0034089:16229-16248 Msa1452660:intergenic 40.0%
TAGGAACAGAGGAAAACTGT+AGG - tig0034089:16235-16254 Msa1452660:intergenic 40.0%
ACAGGAATAGAAGAACAGTG+GGG - tig0034089:16303-16322 Msa1452660:intergenic 40.0%
!! GTATTTTTGAGGGGTAACCT+TGG + tig0034089:16381-16400 Msa1452660:intron 40.0%
AAGTTGTTGTCATGTGACTC+GGG + tig0034089:16415-16434 Msa1452660:intron 40.0%
CACACAATACACCAAATGGT+GGG + tig0034089:16486-16505 Msa1452660:intron 40.0%
AGAACATAAAAAGGGCAACC+CGG - tig0034089:16552-16571 Msa1452660:intergenic 40.0%
AGGGGAAAATAGTGAAAGAG+AGG - tig0034089:16587-16606 Msa1452660:intergenic 40.0%
AAACAGAGAGAAGGTTGAAG+GGG - tig0034089:16605-16624 Msa1452660:intergenic 40.0%
CAAGCCCAGATAAAATGAAG+AGG - tig0034089:16852-16871 Msa1452660:intergenic 40.0%
! CTCTTCATTTTATCTGGGCT+TGG + tig0034089:16850-16869 Msa1452660:intron 40.0%
! CTTCATTTTATCTGGGCTTG+GGG + tig0034089:16852-16871 Msa1452660:intron 40.0%
! TGCTATTTATGAGGGTGAGA+GGG - tig0034089:16983-17002 Msa1452660:intergenic 40.0%
! ATGCTATTTATGAGGGTGAG+AGG - tig0034089:16984-17003 Msa1452660:intergenic 40.0%
! AGTCAGAGTTTTTCGTTGCA+TGG + tig0034089:17092-17111 Msa1452660:intron 40.0%
! GTTTTTCGTTGCATGGCTTA+AGG + tig0034089:17099-17118 Msa1452660:intron 40.0%
! TTTTCGTTGCATGGCTTAAG+GGG + tig0034089:17101-17120 Msa1452660:intron 40.0%
ATGAAAATGCCAGGGAAAGA+GGG - tig0034089:17142-17161 Msa1452660:intergenic 40.0%
AATGAAAATGCCAGGGAAAG+AGG - tig0034089:17143-17162 Msa1452660:intergenic 40.0%
AACTCGCAAACAAAGCCTTA+GGG - tig0034089:17325-17344 Msa1452660:intergenic 40.0%
AAACTCGCAAACAAAGCCTT+AGG - tig0034089:17326-17345 Msa1452660:intergenic 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG + tig0034089:17325-17344 Msa1452660:intron 40.0%
GGAAAAAAGGAATGAGCAAG+TGG + tig0034089:17371-17390 Msa1452660:intron 40.0%
TGAGCAAGTGGATGAAATAG+AGG + tig0034089:17383-17402 Msa1452660:intron 40.0%
GAAATAGAGGAAAATGGGAG+GGG + tig0034089:17396-17415 Msa1452660:intron 40.0%
TACTAAACCCTCCTCATTTG+GGG + tig0034089:17450-17469 Msa1452660:intron 40.0%
!!! TTTTTTGGTTCCCCCAAATG+AGG - tig0034089:17464-17483 Msa1452660:intergenic 40.0%
! TGTATTGGAGGAGGTTTTTG+GGG + tig0034089:17485-17504 Msa1452660:intron 40.0%
!! TTAGGCTTTGTTTGCGAGTT+TGG - tig0034089:17702-17721 Msa1452660:intergenic 40.0%
!! CTGACAGCTTGCTGATAATT+TGG - tig0034089:17789-17808 Msa1452660:intergenic 40.0%
CAAATTATCAGCAAGCTGTC+AGG + tig0034089:17787-17806 Msa1452660:three_prime_UTR 40.0%
CATTCGAAGCAAACTTATGC+TGG - tig0034089:17831-17850 Msa1452660:intergenic 40.0%
GAATGTTGTGGAGAAATGTC+TGG + tig0034089:17846-17865 Msa1452660:three_prime_UTR 40.0%
AATTAACACTTCCCGTTCAG+AGG - tig0034089:17884-17903 Msa1452660:intergenic 40.0%
!! TGAACGGGAAGTGTTAATTG+CGG + tig0034089:17885-17904 Msa1452660:three_prime_UTR 40.0%
TGCAGCATAGGAACATCGTT+AGG + tig0034089:11213-11232 Msa1452660:CDS 45.0%
GCCGTTGCTTCATATCGTTA+TGG - tig0034089:11542-11561 Msa1452660:intergenic 45.0%
TAACGATATGAAGCAACGGC+AGG + tig0034089:11542-11561 Msa1452660:CDS 45.0%
CCAGCCACTACTTCAGTAAT+CGG + tig0034089:11680-11699 Msa1452660:exon 45.0%
CAGCCACTACTTCAGTAATC+GGG + tig0034089:11681-11700 Msa1452660:exon 45.0%
AGCCACTACTTCAGTAATCG+GGG + tig0034089:11682-11701 Msa1452660:exon 45.0%
AACCCCGATTACTGAAGTAG+TGG - tig0034089:11687-11706 Msa1452660:intergenic 45.0%
ATATATGGATGAACCGCGGT+GGG - tig0034089:11828-11847 Msa1452660:intergenic 45.0%
AATATATGGATGAACCGCGG+TGG - tig0034089:11829-11848 Msa1452660:intergenic 45.0%
ACAAATGGTACAGCACCATG+AGG - tig0034089:11864-11883 Msa1452660:intergenic 45.0%
GTAGCCCCATCAACAACAAA+TGG - tig0034089:11879-11898 Msa1452660:intergenic 45.0%
TCCATGCGAAATATTACCCC+CGG - tig0034089:11940-11959 Msa1452660:intergenic 45.0%
GTACATGCGAACAAGTACCT+TGG + tig0034089:11969-11988 Msa1452660:three_prime_UTR 45.0%
CAGGAAATCCAAATTGCCCA+AGG - tig0034089:11989-12008 Msa1452660:intergenic 45.0%
CACAAAAAAAGGCCTGGTAC+TGG + tig0034089:12141-12160 Msa1452660:three_prime_UTR 45.0%
TTTGGACATGTGCCAAACAC+GGG + tig0034089:12252-12271 Msa1452660:three_prime_UTR 45.0%
ATAAAACCTTCCCCAGCTTC+TGG + tig0034089:12369-12388 Msa1452660:three_prime_UTR 45.0%
CCTCAATTTCTACCAGAAGC+TGG - tig0034089:12384-12403 Msa1452660:intergenic 45.0%
CCAGCTTCTGGTAGAAATTG+AGG + tig0034089:12381-12400 Msa1452660:three_prime_UTR 45.0%
AGGCATGGTATCTGGATGTA+TGG + tig0034089:12401-12420 Msa1452660:three_prime_UTR 45.0%
GGTCCAAGATCCTTTGATAG+TGG + tig0034089:12422-12441 Msa1452660:three_prime_UTR 45.0%
TGCCAGATTTCAACTCTGCA+AGG - tig0034089:12472-12491 Msa1452660:intergenic 45.0%
GCAGAGTTGAAATCTGGCAA+AGG + tig0034089:12473-12492 Msa1452660:three_prime_UTR 45.0%
ACTTCCATGCTGATCAAAGC+TGG - tig0034089:12633-12652 Msa1452660:intergenic 45.0%
CAACAGAAGCTGGAAAGTTG+TGG + tig0034089:12662-12681 Msa1452660:three_prime_UTR 45.0%
! TGGTGCTGAAGAGAAAGCAT+TGG + tig0034089:12682-12701 Msa1452660:three_prime_UTR 45.0%
CGGTAACTACGTGATACAGA+AGG + tig0034089:12754-12773 Msa1452660:three_prime_UTR 45.0%
AGTATGGAAACCCTTAGCAG+AGG + tig0034089:12875-12894 Msa1452660:three_prime_UTR 45.0%
GAGGGAACTTGCAGATAAAC+TGG + tig0034089:12897-12916 Msa1452660:three_prime_UTR 45.0%
GAACTTGCAGATAAACTGGC+TGG + tig0034089:12901-12920 Msa1452660:three_prime_UTR 45.0%
CCATACATCTGCAGACTCAA+AGG - tig0034089:12937-12956 Msa1452660:intergenic 45.0%
CCTTTGAGTCTGCAGATGTA+TGG + tig0034089:12934-12953 Msa1452660:three_prime_UTR 45.0%
ATGGCTGCGTGTAATCCAAA+AGG + tig0034089:12953-12972 Msa1452660:three_prime_UTR 45.0%
GCCCAACTAGGTTGTGAAAA+TGG - tig0034089:13178-13197 Msa1452660:intergenic 45.0%
ATTACAACAACCAGCACCTG+TGG + tig0034089:13261-13280 Msa1452660:intron 45.0%
TTACAACAACCAGCACCTGT+GGG + tig0034089:13262-13281 Msa1452660:intron 45.0%
!!! GCTGTTTTTGTTCTGCAGGT+AGG + tig0034089:13706-13725 Msa1452660:intron 45.0%
! TTTTGTTCTGCAGGTAGGGT+TGG + tig0034089:13711-13730 Msa1452660:intron 45.0%
TTTGTTCTGCAGGTAGGGTT+GGG + tig0034089:13712-13731 Msa1452660:intron 45.0%
TCAGTGTGTTGGGTGATTTC+CGG - tig0034089:13738-13757 Msa1452660:intergenic 45.0%
CAACAGAAAGGTAATCCGAC+AGG - tig0034089:13765-13784 Msa1452660:intergenic 45.0%
AAACAACAACATGTTGGCGC+TGG + tig0034089:13956-13975 Msa1452660:intron 45.0%
AAACTCAACCCAACCTACAC+AGG - tig0034089:14038-14057 Msa1452660:intergenic 45.0%
AAAACTGTATACATGGGCCG+AGG - tig0034089:14067-14086 Msa1452660:intergenic 45.0%
!! TTGCATGCACTTTTTGGCAG+AGG + tig0034089:14088-14107 Msa1452660:intron 45.0%
TGGATGACTCGACAACCATA+AGG - tig0034089:14582-14601 Msa1452660:intergenic 45.0%
TTATGGTTGTCGAGTCATCC+AGG + tig0034089:14581-14600 Msa1452660:three_prime_UTR 45.0%
! GTCAGTTTGTTCTCTTGCTC+AGG + tig0034089:14732-14751 Msa1452660:three_prime_UTR 45.0%
ATGCAGCAAGCAACTAACCT+GGG - tig0034089:14779-14798 Msa1452660:intergenic 45.0%
CACAGCAATTTCATAGGGTG+TGG - tig0034089:14926-14945 Msa1452660:intergenic 45.0%
CCCTATGAAATTGCTGTGAC+AGG + tig0034089:14928-14947 Msa1452660:intron 45.0%
! AGCATGATTTGTGACGGTCT+TGG + tig0034089:14956-14975 Msa1452660:intron 45.0%
! GTGTTAGCTTCAAACAAGGG+AGG - tig0034089:15263-15282 Msa1452660:intergenic 45.0%
TCCTTGTGGCCTTCACTAAT+AGG + tig0034089:15643-15662 Msa1452660:intron 45.0%
TCCTATTAGTGAAGGCCACA+AGG - tig0034089:15647-15666 Msa1452660:intergenic 45.0%
TAGTCAATTGCGGCCAATAG+AGG + tig0034089:15763-15782 Msa1452660:intron 45.0%
!! CTTTGCAGAAGCACCTATTG+CGG - tig0034089:15864-15883 Msa1452660:intergenic 45.0%
TAGACTTCAGTGGGGAACAA+AGG + tig0034089:15955-15974 Msa1452660:intron 45.0%
AGACTTCAGTGGGGAACAAA+GGG + tig0034089:15956-15975 Msa1452660:intron 45.0%
! GATGGTCGCAGTTAGTTTGA+AGG - tig0034089:16039-16058 Msa1452660:intergenic 45.0%
CGCAGAAAAGAAAGGAAGGA+TGG - tig0034089:16057-16076 Msa1452660:intergenic 45.0%
GTCTCGCAGAAAAGAAAGGA+AGG - tig0034089:16061-16080 Msa1452660:intergenic 45.0%
GGTTGTCTCGCAGAAAAGAA+AGG - tig0034089:16065-16084 Msa1452660:intergenic 45.0%
GCAGGAAACAGATCGAAAAC+TGG - tig0034089:16175-16194 Msa1452660:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - tig0034089:16448-16467 Msa1452660:intergenic 45.0%
GCTGCACACAATACACCAAA+TGG + tig0034089:16482-16501 Msa1452660:intron 45.0%
GCACACAATACACCAAATGG+TGG + tig0034089:16485-16504 Msa1452660:intron 45.0%
AGGTAGTCATCCCTGAATAG+AGG - tig0034089:16802-16821 Msa1452660:intergenic 45.0%
CATGGCTTAAGGGGAATTTG+AGG + tig0034089:17110-17129 Msa1452660:intron 45.0%
TTTGACTCTGGACCTTGTCA+TGG + tig0034089:17259-17278 Msa1452660:intron 45.0%
AAGGGTAGCAAACCATGACA+AGG - tig0034089:17274-17293 Msa1452660:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + tig0034089:17329-17348 Msa1452660:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + tig0034089:17330-17349 Msa1452660:intron 45.0%
ACTAAACCCTCCTCATTTGG+GGG + tig0034089:17451-17470 Msa1452660:intron 45.0%
!! GTATTGGAGGAGGTTTTTGG+GGG + tig0034089:17486-17505 Msa1452660:intron 45.0%
!! TATTGGAGGAGGTTTTTGGG+GGG + tig0034089:17487-17506 Msa1452660:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - tig0034089:17330-17349 Msa1452660:intergenic 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - tig0034089:17329-17348 Msa1452660:intergenic 45.0%
TTACAGCATGTGTTGGAGAG+AGG + tig0034089:17745-17764 Msa1452660:intron 45.0%
AGAGAGGTAGACCTCAAGAA+AGG + tig0034089:17761-17780 Msa1452660:three_prime_UTR 45.0%
! GTGGAGAAATGTCTGGAGTA+TGG + tig0034089:17853-17872 Msa1452660:three_prime_UTR 45.0%
!!! TTATTTTTTTTTATATATTG+AGG + tig0034089:16913-16932 Msa1452660:intron 5.0%
!!! TATTTTTTTTTATATATTGA+GGG + tig0034089:16914-16933 Msa1452660:intron 5.0%
CAGCGAAATCTCACGAATGG+CGG - tig0034089:11183-11202 Msa1452660:intergenic 50.0%
GAGCAGCGAAATCTCACGAA+TGG - tig0034089:11186-11205 Msa1452660:intergenic 50.0%
AAACTGTTCCCTGCCAACGT+AGG - tig0034089:11631-11650 Msa1452660:intergenic 50.0%
TGAAGTAGTGGCTGGACATC+AGG - tig0034089:11675-11694 Msa1452660:intergenic 50.0%
CCGATTACTGAAGTAGTGGC+TGG - tig0034089:11683-11702 Msa1452660:intergenic 50.0%
AGCAGCTGCTGTCGCATATA+GGG - tig0034089:11718-11737 Msa1452660:intergenic 50.0%
AAGCAGCTGCTGTCGCATAT+AGG - tig0034089:11719-11738 Msa1452660:intergenic 50.0%
TGCGACAGCAGCTGCTTATA+TGG + tig0034089:11722-11741 Msa1452660:three_prime_UTR 50.0%
ATGGTACAGCACCATGAGGA+GGG - tig0034089:11860-11879 Msa1452660:intergenic 50.0%
AATGGTACAGCACCATGAGG+AGG - tig0034089:11861-11880 Msa1452660:intergenic 50.0%
! GTTGAAACCCCTGGTGTTAG+CGG - tig0034089:11918-11937 Msa1452660:intergenic 50.0%
CTAACACCAGGGGTTTCAAC+CGG + tig0034089:11918-11937 Msa1452660:three_prime_UTR 50.0%
TAACACCAGGGGTTTCAACC+GGG + tig0034089:11919-11938 Msa1452660:three_prime_UTR 50.0%
ACCGGGGGTAATATTTCGCA+TGG + tig0034089:11936-11955 Msa1452660:three_prime_UTR 50.0%
TCGCCAAAAGAAGGCTGTAC+AGG - tig0034089:12008-12027 Msa1452660:intergenic 50.0%
!! ACACTTGCTATAGGTGCCTG+TGG - tig0034089:12098-12117 Msa1452660:intergenic 50.0%
GGATATCCAGATGGAAGTCC+TGG + tig0034089:12324-12343 Msa1452660:three_prime_UTR 50.0%
TTTCTACCTCCTGAAAGGCC+AGG - tig0034089:12345-12364 Msa1452660:intergenic 50.0%
TTTCTACCAGAAGCTGGGGA+AGG - tig0034089:12378-12397 Msa1452660:intergenic 50.0%
GGGGTCTTGACCACTATCAA+AGG - tig0034089:12435-12454 Msa1452660:intergenic 50.0%
! ACCTCCAGCTTTGATCAGCA+TGG + tig0034089:12626-12645 Msa1452660:intron 50.0%
TCCATGCTGATCAAAGCTGG+AGG - tig0034089:12630-12649 Msa1452660:intergenic 50.0%
! GTTTGCCCCCGAATCTGTTT+TGG + tig0034089:12816-12835 Msa1452660:intron 50.0%
ATGGAAACCCTTAGCAGAGG+AGG + tig0034089:12878-12897 Msa1452660:three_prime_UTR 50.0%
TGGAAACCCTTAGCAGAGGA+GGG + tig0034089:12879-12898 Msa1452660:three_prime_UTR 50.0%
CAAGTTCCCTCCTCTGCTAA+GGG - tig0034089:12888-12907 Msa1452660:intergenic 50.0%
TTGGAAGTCAGTGCCCAACT+AGG - tig0034089:13190-13209 Msa1452660:intergenic 50.0%
TACAACAACCAGCACCTGTG+GGG + tig0034089:13263-13282 Msa1452660:intron 50.0%
!!! GTGGGCTGTTTTTGTTCTGC+AGG + tig0034089:13702-13721 Msa1452660:intron 50.0%
GACAGGTCAGTCAGTGTGTT+GGG - tig0034089:13748-13767 Msa1452660:intergenic 50.0%
! CAACACACTGACTGACCTGT+CGG + tig0034089:13747-13766 Msa1452660:intron 50.0%
AATAACCTCGAGTGCCTGCA+CGG - tig0034089:14385-14404 Msa1452660:intergenic 50.0%
TTGCAGAGTTTGTGCAGACG+AGG + tig0034089:14675-14694 Msa1452660:intron 50.0%
TCTCTTGCTCAGGACCTGTA+TGG + tig0034089:14742-14761 Msa1452660:three_prime_UTR 50.0%
GATGCAGCAAGCAACTAACC+TGG - tig0034089:14780-14799 Msa1452660:intergenic 50.0%
TGCAAGTGTTCCAGCCGTAT+AGG - tig0034089:15357-15376 Msa1452660:intergenic 50.0%
GCTGGAACACTTGCAGCTTA+AGG + tig0034089:15362-15381 Msa1452660:intron 50.0%
CGGCAATCAAAACATCGCCA+TGG - tig0034089:15825-15844 Msa1452660:intergenic 50.0%
GCGGCTGCAACTTTAATACG+CGG - tig0034089:15845-15864 Msa1452660:intergenic 50.0%
CTGAGCAATGGTTGTGTGTG+CGG - tig0034089:16086-16105 Msa1452660:intergenic 50.0%
GACAGCTTGGCACTGTTTGA+CGG - tig0034089:16119-16138 Msa1452660:intergenic 50.0%
AAACAGAACCTGGTCGTGTG+TGG - tig0034089:16149-16168 Msa1452660:intergenic 50.0%
AGCAGGCAACAGAAAGAAGC+AGG - tig0034089:16193-16212 Msa1452660:intergenic 50.0%
CTAAAGCTCCAGCATACGCA+GGG - tig0034089:16525-16544 Msa1452660:intergenic 50.0%
ACTAAAGCTCCAGCATACGC+AGG - tig0034089:16526-16545 Msa1452660:intergenic 50.0%
! ATGCTGGAGCTTTAGTGCAC+CGG + tig0034089:16530-16549 Msa1452660:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + tig0034089:17328-17347 Msa1452660:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG + tig0034089:17335-17354 Msa1452660:intron 50.0%
AGGGGAAGGCTTGGGAAAAA+AGG + tig0034089:17358-17377 Msa1452660:intron 50.0%
ATAGAGGAAAATGGGAGGGG+AGG + tig0034089:17399-17418 Msa1452660:intron 50.0%
TAGAGGAAAATGGGAGGGGA+GGG + tig0034089:17400-17419 Msa1452660:intron 50.0%
! AAAATGGGAGGGGAGGGTTT+TGG + tig0034089:17406-17425 Msa1452660:intron 50.0%
! AAATGGGAGGGGAGGGTTTT+GGG + tig0034089:17407-17426 Msa1452660:intron 50.0%
TTGGTTCCCCCAAATGAGGA+GGG - tig0034089:17460-17479 Msa1452660:intergenic 50.0%
! TTTGGTTCCCCCAAATGAGG+AGG - tig0034089:17461-17480 Msa1452660:intergenic 50.0%
!! AGGAGGTTTTTGGGGGGTTT+TGG + tig0034089:17493-17512 Msa1452660:intron 50.0%
!! AGGTTTTTGGGGGGTTTTGG+AGG + tig0034089:17496-17515 Msa1452660:intron 50.0%
!!! GGTTTTTGGGGGGTTTTGGA+GGG + tig0034089:17497-17516 Msa1452660:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - tig0034089:17328-17347 Msa1452660:intergenic 50.0%
! AGTATGGTGACGCCTCTGAA+CGG + tig0034089:17869-17888 Msa1452660:three_prime_UTR 50.0%
ATCTCACGAATGGCGGTGCT+AGG - tig0034089:11176-11195 Msa1452660:intergenic 55.0%
AGTGTACACCCTGCCTACGT+TGG + tig0034089:11615-11634 Msa1452660:CDS 55.0%
GCTGCTGTCGCATATAGGGT+AGG - tig0034089:11714-11733 Msa1452660:intergenic 55.0%
! TTGAGGAGTGTATCGGCCTG+AGG - tig0034089:11781-11800 Msa1452660:intergenic 55.0%
AGCTATGCTCCGCTAACACC+AGG + tig0034089:11906-11925 Msa1452660:three_prime_UTR 55.0%
GCTATGCTCCGCTAACACCA+GGG + tig0034089:11907-11926 Msa1452660:three_prime_UTR 55.0%
CTATGCTCCGCTAACACCAG+GGG + tig0034089:11908-11927 Msa1452660:three_prime_UTR 55.0%
AACACCAGGGGTTTCAACCG+GGG + tig0034089:11920-11939 Msa1452660:three_prime_UTR 55.0%
! GACAAAACTGGACTGGGAGG+TGG - tig0034089:12303-12322 Msa1452660:intergenic 55.0%
! CCAGACAAAACTGGACTGGG+AGG - tig0034089:12306-12325 Msa1452660:intergenic 55.0%
!! CCTCCCAGTCCAGTTTTGTC+TGG + tig0034089:12303-12322 Msa1452660:three_prime_UTR 55.0%
GAAAGGCCAGGACTTCCATC+TGG - tig0034089:12333-12352 Msa1452660:intergenic 55.0%
! GATGGAAGTCCTGGCCTTTC+AGG + tig0034089:12333-12352 Msa1452660:three_prime_UTR 55.0%
GCAAGTTCCCTCCTCTGCTA+AGG - tig0034089:12889-12908 Msa1452660:intergenic 55.0%
AAACTCTTCCCCACAGGTGC+TGG - tig0034089:13274-13293 Msa1452660:intergenic 55.0%
TACCCAGCCCAAGTTGCAGA+TGG + tig0034089:13680-13699 Msa1452660:intron 55.0%
CACCATCTGCAACTTGGGCT+GGG - tig0034089:13685-13704 Msa1452660:intergenic 55.0%
CAGCCCAAGTTGCAGATGGT+GGG + tig0034089:13684-13703 Msa1452660:intron 55.0%
CAGCCCACCATCTGCAACTT+GGG - tig0034089:13690-13709 Msa1452660:intergenic 55.0%
ACAGCCCACCATCTGCAACT+TGG - tig0034089:13691-13710 Msa1452660:intergenic 55.0%
CGACAGGTCAGTCAGTGTGT+TGG - tig0034089:13749-13768 Msa1452660:intergenic 55.0%
AACCTACACAGGCAGGGGTT+GGG - tig0034089:14027-14046 Msa1452660:intergenic 55.0%
AACCCCTGCCTGTGTAGGTT+GGG + tig0034089:14027-14046 Msa1452660:intron 55.0%
AACCCAACCTACACAGGCAG+GGG - tig0034089:14032-14051 Msa1452660:intergenic 55.0%
CAACCCAACCTACACAGGCA+GGG - tig0034089:14033-14052 Msa1452660:intergenic 55.0%
TCAACCCAACCTACACAGGC+AGG - tig0034089:14034-14053 Msa1452660:intergenic 55.0%
! AGCTCAGCTTGTTCGTGAGC+TGG + tig0034089:14419-14438 Msa1452660:three_prime_UTR 55.0%
! CAGCTTGTTCGTGAGCTGGA+TGG + tig0034089:14423-14442 Msa1452660:three_prime_UTR 55.0%
GTGTTGCAGAGCAACACTGC+TGG + tig0034089:15796-15815 Msa1452660:intron 55.0%
CATCTTGCCTGCGAGATTGC+TGG + tig0034089:15898-15917 Msa1452660:intron 55.0%
CTCATGACCAGCAATCTCGC+AGG - tig0034089:15908-15927 Msa1452660:intergenic 55.0%
CTGCGAGATTGCTGGTCATG+AGG + tig0034089:15906-15925 Msa1452660:intron 55.0%
AGCTTGGCACTGTTTGACGG+TGG - tig0034089:16116-16135 Msa1452660:intergenic 55.0%
CAAACAGTGCCAAGCTGTCG+TGG + tig0034089:16120-16139 Msa1452660:intron 55.0%
CAACTTTACCAGCTGCGCCA+AGG - tig0034089:16401-16420 Msa1452660:intergenic 55.0%
! TGTGACTCGGGTTCAAGTCC+TGG + tig0034089:16427-16446 Msa1452660:intron 55.0%
! TGCTGGAGCTTTAGTGCACC+GGG + tig0034089:16531-16550 Msa1452660:intron 55.0%
AGCAACCATCCAGCTATCCC+TGG + tig0034089:16757-16776 Msa1452660:intron 55.0%
GCAACCATCCAGCTATCCCT+GGG + tig0034089:16758-16777 Msa1452660:intron 55.0%
TGAACCCAGGGATAGCTGGA+TGG - tig0034089:16765-16784 Msa1452660:intergenic 55.0%
ATCCAGCTATCCCTGGGTTC+AGG + tig0034089:16764-16783 Msa1452660:intron 55.0%
TCCAGCTATCCCTGGGTTCA+GGG + tig0034089:16765-16784 Msa1452660:intron 55.0%
TCAGCTCTGCGCCTCTATTC+AGG + tig0034089:16788-16807 Msa1452660:intron 55.0%
CAGCTCTGCGCCTCTATTCA+GGG + tig0034089:16789-16808 Msa1452660:intron 55.0%
AGGTTGTCTCCCTCTTTCCC+TGG + tig0034089:17130-17149 Msa1452660:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG + tig0034089:17334-17353 Msa1452660:intron 55.0%
! AATGGGAGGGGAGGGTTTTG+GGG + tig0034089:17408-17427 Msa1452660:intron 55.0%
AGGGGAAGGGAAGGCTTCTA+GGG - tig0034089:17674-17693 Msa1452660:intergenic 55.0%
TTTGCGAGTTTGGAGGGGAG+GGG - tig0034089:17692-17711 Msa1452660:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG - tig0034089:17334-17353 Msa1452660:intergenic 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG - tig0034089:17333-17352 Msa1452660:intergenic 55.0%
! GTATGGTGACGCCTCTGAAC+GGG + tig0034089:17870-17889 Msa1452660:three_prime_UTR 55.0%
TACACCCTGCCTACGTTGGC+AGG + tig0034089:11619-11638 Msa1452660:CDS 60.0%
ACACCCTGCCTACGTTGGCA+GGG + tig0034089:11620-11639 Msa1452660:CDS 60.0%
GTTCCCTGCCAACGTAGGCA+GGG - tig0034089:11626-11645 Msa1452660:intergenic 60.0%
TGTTCCCTGCCAACGTAGGC+AGG - tig0034089:11627-11646 Msa1452660:intergenic 60.0%
ACACCAGGGGTTTCAACCGG+GGG + tig0034089:11921-11940 Msa1452660:three_prime_UTR 60.0%
TTACCCCCGGTTGAAACCCC+TGG - tig0034089:11927-11946 Msa1452660:intergenic 60.0%
! GGAAGTCCTGGCCTTTCAGG+AGG + tig0034089:12336-12355 Msa1452660:three_prime_UTR 60.0%
! CTGCAACTTGGGCTGGGTAC+AGG - tig0034089:13679-13698 Msa1452660:intergenic 60.0%
CCACCATCTGCAACTTGGGC+TGG - tig0034089:13686-13705 Msa1452660:intergenic 60.0%
CCAGCCCAAGTTGCAGATGG+TGG + tig0034089:13683-13702 Msa1452660:intron 60.0%
TTCTGCAGGTAGGGTTGGGC+CGG + tig0034089:13716-13735 Msa1452660:intron 60.0%
AACCCAACCCCTGCCTGTGT+AGG + tig0034089:14022-14041 Msa1452660:intron 60.0%
CAACCTACACAGGCAGGGGT+TGG - tig0034089:14028-14047 Msa1452660:intergenic 60.0%
CAACCCCTGCCTGTGTAGGT+TGG + tig0034089:14026-14045 Msa1452660:intron 60.0%
TATGTCCGTGCAGGCACTCG+AGG + tig0034089:14377-14396 Msa1452660:intron 60.0%
CACTGCGATCGCGCCTCTAT+TGG - tig0034089:15779-15798 Msa1452660:intergenic 60.0%
! AGCAACACTGCTGGCTGCCA+TGG + tig0034089:15805-15824 Msa1452660:intron 60.0%
GTGTGGCTTCCACGACAGCT+TGG - tig0034089:16132-16151 Msa1452660:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + tig0034089:16498-16517 Msa1452660:intron 60.0%
ACCCTGAACCCAGGGATAGC+TGG - tig0034089:16769-16788 Msa1452660:intergenic 60.0%
CAGAGCTGACCCTGAACCCA+GGG - tig0034089:16777-16796 Msa1452660:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG + tig0034089:17339-17358 Msa1452660:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + tig0034089:17340-17359 Msa1452660:intron 60.0%
!! ATGGGAGGGGAGGGTTTTGG+GGG + tig0034089:17409-17428 Msa1452660:intron 60.0%
! GAAGGGAAGGCTTCTAGGGG+TGG - tig0034089:17670-17689 Msa1452660:intergenic 60.0%
GGGGAAGGGAAGGCTTCTAG+GGG - tig0034089:17673-17692 Msa1452660:intergenic 60.0%
GAGGGGAAGGGAAGGCTTCT+AGG - tig0034089:17675-17694 Msa1452660:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG - tig0034089:17687-17706 Msa1452660:intergenic 60.0%
GGACTGGGAGGTGGTGAACC+TGG - tig0034089:12294-12313 Msa1452660:intergenic 65.0%
GGTGGCGTGCGACTGAGCAA+TGG - tig0034089:16098-16117 Msa1452660:intergenic 65.0%
CGTGGAAGCCACACACGACC+AGG + tig0034089:16138-16157 Msa1452660:intron 65.0%
AGGGGTAACCTTGGCGCAGC+TGG + tig0034089:16390-16409 Msa1452660:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - tig0034089:16500-16519 Msa1452660:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG - tig0034089:16513-16532 Msa1452660:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG - tig0034089:16514-16533 Msa1452660:intergenic 65.0%
AGCATACGCAGGGTCCGGGA+AGG - tig0034089:16515-16534 Msa1452660:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+TGG + tig0034089:16514-16533 Msa1452660:intron 65.0%
CTCCAGCATACGCAGGGTCC+GGG - tig0034089:16519-16538 Msa1452660:intergenic 65.0%
GCTCCAGCATACGCAGGGTC+CGG - tig0034089:16520-16539 Msa1452660:intergenic 65.0%
GCAGAGCTGACCCTGAACCC+AGG - tig0034089:16778-16797 Msa1452660:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG + tig0034089:17338-17357 Msa1452660:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG + tig0034089:17344-17363 Msa1452660:intron 65.0%
GGGAAGGGAGGGGAAGGCTT+GGG + tig0034089:17350-17369 Msa1452660:intron 65.0%
!!! TGGGAGGGGAGGGTTTTGGG+GGG + tig0034089:17410-17429 Msa1452660:intron 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG - tig0034089:17683-17702 Msa1452660:intergenic 65.0%
CGAGTTTGGAGGGGAGGGGA+AGG - tig0034089:17688-17707 Msa1452660:intergenic 65.0%
GGGGAAGGGAGGGGAAGGCT+TGG + tig0034089:17349-17368 Msa1452660:intron 70.0%
Chromosome Type Strat End Strand Name
tig0034089 gene 11087 17916 11087 ID=Msa1452660;Name=Msa1452660
tig0034089 mRNA 11087 17916 11087 ID=Msa1452660-mRNA-1;Parent=Msa1452660;Name=Msa1452660-mRNA-1;_AED=0.23;_eAED=0.23;_QI=75|1|1|1|0.16|0.28|7|1577|115
tig0034089 exon 11087 11234 11087 ID=Msa1452660-mRNA-1:exon:18710;Parent=Msa1452660-mRNA-1
tig0034089 exon 11424 12547 11424 ID=Msa1452660-mRNA-1:exon:18711;Parent=Msa1452660-mRNA-1
tig0034089 exon 12634 12775 12634 ID=Msa1452660-mRNA-1:exon:18712;Parent=Msa1452660-mRNA-1
tig0034089 exon 12868 12974 12868 ID=Msa1452660-mRNA-1:exon:18713;Parent=Msa1452660-mRNA-1
tig0034089 exon 14390 14602 14390 ID=Msa1452660-mRNA-1:exon:18714;Parent=Msa1452660-mRNA-1
tig0034089 exon 14681 14780 14681 ID=Msa1452660-mRNA-1:exon:18715;Parent=Msa1452660-mRNA-1
tig0034089 exon 17751 17916 17751 ID=Msa1452660-mRNA-1:exon:18716;Parent=Msa1452660-mRNA-1
tig0034089 five_prime_UTR 11087 11161 11087 ID=Msa1452660-mRNA-1:five_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 CDS 11162 11234 11162 ID=Msa1452660-mRNA-1:cds;Parent=Msa1452660-mRNA-1
tig0034089 CDS 11424 11698 11424 ID=Msa1452660-mRNA-1:cds;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 11699 12547 11699 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 12634 12775 12634 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 12868 12974 12868 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 14390 14602 14390 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 14681 14780 14681 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
tig0034089 three_prime_UTR 17751 17916 17751 ID=Msa1452660-mRNA-1:three_prime_utr;Parent=Msa1452660-mRNA-1
Gene Sequence

>Msa1452660

ATGAAGGTGTTCCTAGCACCGCCATTCGTGAGATTTCGCTGCTCAAAGAAATGCAGCATAGGAACATCGTTAGTGAATTGGAAGATTAACAATGTTGCAACTGTTGCATCTCAATTAAATACACTTAGTGTATCTAATCTACCAAATTCTGAAAGCCTGAGTTATGAAGTAAAATTGACGACCAGCTACCATAACGATATGAAGCAACGGCAGGTATTCCCACAACAAAGAAGTCCGTATGAAGTTCCTAGTGCCAATTCTCAAAGTGTACACCCTGCCTACGTTGGCAGGGAACAGTTTCCTCATAATTCAAGCAAGTTGCCTGATGTCCAGCCACTACTTCAGTAA
Protein sequence

>Msa1452660

MKVFLAPPFVRFRCSKKCSIGTSLVNWKINNVATVASQLNTLSVSNLPNSESLSYEVKLTTSYHNDMKQRQVFPQQRSPYEVPSANSQSVHPAYVGREQFPHNSSKLPDVQPLLQ*