Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440520 | MCH98444.1 | 80.303 | 66 | 13 | 0 | 1 | 66 | 5 | 70 | 1.15e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440520 | A0A392NJ11 | 80.303 | 66 | 13 | 0 | 1 | 66 | 5 | 70 | 5.49e-26 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064970 | Msa0440520 | 0.800807 | 1.211648e-48 | -8.615850e-47 |
| Msa0128020 | Msa0440520 | 0.801395 | 9.189559e-49 | -8.615850e-47 |
| Msa0208720 | Msa0440520 | 0.807629 | 4.604109e-50 | -8.615850e-47 |
| Msa0222890 | Msa0440520 | 0.806177 | 9.335334e-50 | -8.615850e-47 |
| Msa0397750 | Msa0440520 | 0.807371 | 5.221630e-50 | -8.615850e-47 |
| Msa0440520 | Msa0498650 | 0.810162 | 1.321923e-50 | -8.615850e-47 |
| Msa0440520 | Msa0610430 | 0.807317 | 5.363462e-50 | -8.615850e-47 |
| Msa0440520 | Msa0766630 | 0.800140 | 1.656960e-48 | -8.615850e-47 |
| Msa0440520 | Msa0820850 | 0.803828 | 2.893864e-49 | -8.615850e-47 |
| Msa0440520 | Msa0861130 | 0.808809 | 2.580828e-50 | -8.615850e-47 |
| Msa0440520 | Msa0902070 | 0.812195 | 4.791376e-51 | -8.615850e-47 |
| Msa0440520 | Msa0909620 | 0.811847 | 5.703091e-51 | -8.615850e-47 |
| Msa0440520 | Msa0927290 | 0.814689 | 1.355309e-51 | -8.615850e-47 |
| Msa0440520 | Msa0976670 | 0.822291 | 2.562732e-53 | -8.615850e-47 |
| Msa0440520 | Msa1014540 | 0.807790 | 4.254463e-50 | -8.615850e-47 |
| Msa0440520 | Msa1069990 | 0.806377 | 8.471915e-50 | -8.615850e-47 |
| Msa0440520 | Msa1169820 | 0.806876 | 6.648997e-50 | -8.615850e-47 |
| Msa0440520 | Msa1174040 | 0.813800 | 2.130727e-51 | -8.615850e-47 |
| Msa0440520 | Msa1282580 | -0.803015 | 4.265448e-49 | -8.615850e-47 |
| Msa0440520 | Msa1452660 | 0.809039 | 2.304298e-50 | -8.615850e-47 |
| Msa0239240 | Msa0440520 | 0.802146 | 6.441912e-49 | -8.615850e-47 |
| Msa0339620 | Msa0440520 | 0.803192 | 3.920472e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440520 | MtrunA17_Chr1g0164581 | 81.818 | 66 | 12 | 0 | 1 | 66 | 1124 | 1189 | 3.86e-28 | 108 |
| Msa0440520 | MtrunA17_Chr3g0082131 | 54.545 | 77 | 17 | 2 | 8 | 66 | 1102 | 1178 | 5.37e-16 | 73.9 |
| Msa0440520 | MtrunA17_Chr3g0087841 | 53.968 | 63 | 29 | 0 | 3 | 65 | 1060 | 1122 | 1.48e-13 | 66.6 |
| Msa0440520 | MtrunA17_Chr3g0090371 | 50.794 | 63 | 31 | 0 | 3 | 65 | 1154 | 1216 | 8.43e-13 | 64.7 |
| Msa0440520 | MtrunA17_Chr3g0090141 | 50.794 | 63 | 31 | 0 | 3 | 65 | 1155 | 1217 | 3.58e-12 | 62.8 |
| Msa0440520 | MtrunA17_Chr4g0025391 | 52.459 | 61 | 29 | 0 | 3 | 63 | 1150 | 1210 | 5.32e-12 | 62.4 |
| Msa0440520 | MtrunA17_Chr3g0082341 | 49.231 | 65 | 33 | 0 | 1 | 65 | 59 | 123 | 8.16e-12 | 59.3 |
| Msa0440520 | MtrunA17_Chr3g0082401 | 52.239 | 67 | 31 | 1 | 1 | 66 | 418 | 484 | 8.83e-12 | 61.6 |
| Msa0440520 | MtrunA17_Chr3g0089871 | 51.562 | 64 | 31 | 0 | 3 | 66 | 1139 | 1202 | 1.02e-11 | 61.6 |
| Msa0440520 | MtrunA17_Chr3g0089761 | 52.459 | 61 | 29 | 0 | 3 | 63 | 1150 | 1210 | 3.72e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATTTAAAATGCTTAAA+AGG | 0.102888 | 3_3:-8016815 | Msa0440520:CDS |
| CCAGCCATCACTAGAATTTC+TGG | 0.193410 | 3_3:+8015574 | None:intergenic |
| TGTTCCAGAAGACCATTTAT+TGG | 0.218593 | 3_3:+8015636 | None:intergenic |
| ATGAATTCCCTGATGAAAAT+TGG | 0.253489 | 3_3:-8016887 | None:intergenic |
| GCATCCAATAAATGGTCTTC+TGG | 0.278325 | 3_3:-8015640 | Msa0440520:CDS |
| TGGAGTTTGCATCCAATAAA+TGG | 0.347044 | 3_3:-8015648 | Msa0440520:CDS |
| GTGTGGTCCTTTCGTTTAGT+AGG | 0.382378 | 3_3:+8015529 | None:intergenic |
| GAGGAAGGCAGTCCTTCTTC+TGG | 0.424904 | 3_3:+8016722 | None:intergenic |
| TTCTAGTGATGGCTGGTGAT+AGG | 0.434272 | 3_3:-8015567 | Msa0440520:CDS |
| ATTATTTAAAATGCTTAAAA+GGG | 0.445119 | 3_3:-8016814 | Msa0440520:CDS |
| GACCACACTCGAGGAGTTTG+TGG | 0.466177 | 3_3:-8015514 | Msa0440520:CDS |
| AGGCAGTCCTTCTTCTGGTA+AGG | 0.487880 | 3_3:+8016727 | None:intergenic |
| ATCTTCTTGATCTCATCAGC+TGG | 0.491734 | 3_3:-8015251 | Msa0440520:CDS |
| TTTCTCTTTCCAGGTTAGAG+TGG | 0.501299 | 3_3:-8015668 | Msa0440520:intron |
| CTTGAATCCTTACCAGAAGA+AGG | 0.532885 | 3_3:-8016734 | Msa0440520:CDS |
| CTCAACTACATCTCAGACAC+AGG | 0.553533 | 3_3:+8015224 | None:intergenic |
| GTCACTGCTGAAAGAGAGGA+AGG | 0.558438 | 3_3:+8016707 | None:intergenic |
| TTGAGATTTCAGATTGTCGC+CGG | 0.560529 | 3_3:-8016757 | Msa0440520:CDS |
| CCAGAAATTCTAGTGATGGC+TGG | 0.564186 | 3_3:-8015574 | Msa0440520:CDS |
| TGTATCAATACGAGAGAAGT+CGG | 0.575258 | 3_3:+8016851 | None:intergenic |
| TCTGCCAGAAATTCTAGTGA+TGG | 0.584289 | 3_3:-8015578 | Msa0440520:CDS |
| GATAGTCACTGCTGAAAGAG+AGG | 0.586070 | 3_3:+8016703 | None:intergenic |
| GGCGACAATCTGAAATCTCA+AGG | 0.586350 | 3_3:+8016759 | None:intergenic |
| CACTCGAGGAGTTTGTGGAC+AGG | 0.588850 | 3_3:-8015509 | Msa0440520:CDS |
| GATGGCTGGTGATAGGAATG+AGG | 0.594383 | 3_3:-8015560 | Msa0440520:CDS |
| ATGGCTGGTGATAGGAATGA+GGG | 0.596440 | 3_3:-8015559 | Msa0440520:CDS |
| GTCCACAAACTCCTCGAGTG+TGG | 0.601993 | 3_3:+8015512 | None:intergenic |
| TGGCAGAATTGCTGAAGTGT+GGG | 0.610074 | 3_3:+8015594 | None:intergenic |
| CTGGCAGAATTGCTGAAGTG+TGG | 0.615832 | 3_3:+8015593 | None:intergenic |
| CTTCTGGTAAGGATTCAAGC+CGG | 0.655750 | 3_3:+8016738 | None:intergenic |
| AGTTTCGCCTACTAAACGAA+AGG | 0.665735 | 3_3:-8015536 | Msa0440520:CDS |
| AAACGAAAGGACCACACTCG+AGG | 0.667654 | 3_3:-8015523 | Msa0440520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTAAAATGCTTAAA+AGG | - | chr3_3:8015289-8015308 | Msa0440520:intron | 10.0% |
| !!! | ATTATTTAAAATGCTTAAAA+GGG | - | chr3_3:8015290-8015309 | Msa0440520:intron | 10.0% |
| !!! | TATTATTTAAAATGCTTAAA+AGG | - | chr3_3:8015289-8015308 | Msa0440520:intron | 10.0% |
| !!! | ATTATTTAAAATGCTTAAAA+GGG | - | chr3_3:8015290-8015309 | Msa0440520:intron | 10.0% |
| !!! | GCATTTTAAATAATAAAGAT+GGG | + | chr3_3:8015284-8015303 | None:intergenic | 15.0% |
| !!! | AGCATTTTAAATAATAAAGA+TGG | + | chr3_3:8015285-8015304 | None:intergenic | 15.0% |
| !! | GTACAATAAAATAAATAAAG+CGG | + | chr3_3:8015600-8015619 | None:intergenic | 15.0% |
| !! | TAATTAAACTATATGAACTT+TGG | - | chr3_3:8015780-8015799 | Msa0440520:intron | 15.0% |
| !! | TATATGAAATAAAAATGTCT+AGG | - | chr3_3:8015905-8015924 | Msa0440520:intron | 15.0% |
| !!! | GCATTTTAAATAATAAAGAT+GGG | + | chr3_3:8015284-8015303 | None:intergenic | 15.0% |
| !!! | AGCATTTTAAATAATAAAGA+TGG | + | chr3_3:8015285-8015304 | None:intergenic | 15.0% |
| !! | GTACAATAAAATAAATAAAG+CGG | + | chr3_3:8015600-8015619 | None:intergenic | 15.0% |
| !! | TAATTAAACTATATGAACTT+TGG | - | chr3_3:8015780-8015799 | Msa0440520:intron | 15.0% |
| !! | TATATGAAATAAAAATGTCT+AGG | - | chr3_3:8015905-8015924 | Msa0440520:intron | 15.0% |
| !! | AAAAAATACGTGCATAAAAA+AGG | - | chr3_3:8015951-8015970 | Msa0440520:intron | 20.0% |
| !! | AAAAATACGTGCATAAAAAA+GGG | - | chr3_3:8015952-8015971 | Msa0440520:intron | 20.0% |
| !!! | ATTTTATTGAATAATAGAGG+AGG | + | chr3_3:8016815-8016834 | None:intergenic | 20.0% |
| !!! | GGAATTTTATTGAATAATAG+AGG | + | chr3_3:8016818-8016837 | None:intergenic | 20.0% |
| !! | AAAAAATACGTGCATAAAAA+AGG | - | chr3_3:8015951-8015970 | Msa0440520:intron | 20.0% |
| !! | AAAAATACGTGCATAAAAAA+GGG | - | chr3_3:8015952-8015971 | Msa0440520:intron | 20.0% |
| !!! | ATTTTATTGAATAATAGAGG+AGG | + | chr3_3:8016815-8016834 | None:intergenic | 20.0% |
| !!! | GGAATTTTATTGAATAATAG+AGG | + | chr3_3:8016818-8016837 | None:intergenic | 20.0% |
| ! | AAAACTTTAATTGCATGACA+TGG | + | chr3_3:8015648-8015667 | None:intergenic | 25.0% |
| !!! | CTCAATTTTCATTTGAAGTT+TGG | + | chr3_3:8015755-8015774 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCATACACTAACT+TGG | - | chr3_3:8015821-8015840 | Msa0440520:intron | 25.0% |
| !!! | TTCATAGACTCCTTTTTTTT+GGG | + | chr3_3:8016621-8016640 | None:intergenic | 25.0% |
| !!! | TTTCATAGACTCCTTTTTTT+TGG | + | chr3_3:8016622-8016641 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAGTCTATGAA+AGG | - | chr3_3:8016621-8016640 | Msa0440520:intron | 25.0% |
| !!! | ACTTTGGTTCAGAATTATTT+TGG | - | chr3_3:8016703-8016722 | Msa0440520:intron | 25.0% |
| !!! | ATTATTTTGGAGTTCTGTTA+TGG | - | chr3_3:8016716-8016735 | Msa0440520:CDS | 25.0% |
| ! | AAAACTTTAATTGCATGACA+TGG | + | chr3_3:8015648-8015667 | None:intergenic | 25.0% |
| !!! | CTCAATTTTCATTTGAAGTT+TGG | + | chr3_3:8015755-8015774 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCATACACTAACT+TGG | - | chr3_3:8015821-8015840 | Msa0440520:intron | 25.0% |
| !!! | TTCATAGACTCCTTTTTTTT+GGG | + | chr3_3:8016621-8016640 | None:intergenic | 25.0% |
| !!! | TTTCATAGACTCCTTTTTTT+TGG | + | chr3_3:8016622-8016641 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGAGTCTATGAA+AGG | - | chr3_3:8016621-8016640 | Msa0440520:intron | 25.0% |
| !!! | ACTTTGGTTCAGAATTATTT+TGG | - | chr3_3:8016703-8016722 | Msa0440520:intron | 25.0% |
| !!! | ATTATTTTGGAGTTCTGTTA+TGG | - | chr3_3:8016716-8016735 | Msa0440520:CDS | 25.0% |
| CTGTTATCAGTAATTATGCA+TGG | + | chr3_3:8015497-8015516 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTTGCCATTGCAT+TGG | - | chr3_3:8015565-8015584 | Msa0440520:CDS | 30.0% |
| !! | TTATTTCTACCACGTATAAC+TGG | - | chr3_3:8015672-8015691 | Msa0440520:intron | 30.0% |
| AAAGAGAAACTGACACAAAT+TGG | + | chr3_3:8016425-8016444 | None:intergenic | 30.0% | |
| GAAGATTGAGAAAGACTAAA+TGG | + | chr3_3:8016839-8016858 | None:intergenic | 30.0% | |
| CTGTTATCAGTAATTATGCA+TGG | + | chr3_3:8015497-8015516 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTTGCCATTGCAT+TGG | - | chr3_3:8015565-8015584 | Msa0440520:CDS | 30.0% |
| !! | TTATTTCTACCACGTATAAC+TGG | - | chr3_3:8015672-8015691 | Msa0440520:intron | 30.0% |
| AAAGAGAAACTGACACAAAT+TGG | + | chr3_3:8016425-8016444 | None:intergenic | 30.0% | |
| GAAGATTGAGAAAGACTAAA+TGG | + | chr3_3:8016839-8016858 | None:intergenic | 30.0% | |
| TGTATCAATACGAGAGAAGT+CGG | + | chr3_3:8015256-8015275 | None:intergenic | 35.0% | |
| ! | CATTTGAAGTTTGGTTCACT+TGG | + | chr3_3:8015746-8015765 | None:intergenic | 35.0% |
| !!! | TAGGATCTGTCAGTTTTGTT+TGG | - | chr3_3:8015924-8015943 | Msa0440520:intron | 35.0% |
| !!! | AGGATCTGTCAGTTTTGTTT+GGG | - | chr3_3:8015925-8015944 | Msa0440520:intron | 35.0% |
| ! | TGTGATAGTGAGAAGATAGA+CGG | - | chr3_3:8016196-8016215 | Msa0440520:intron | 35.0% |
| GAAACAATGAAACCGTGTTT+CGG | - | chr3_3:8016243-8016262 | Msa0440520:intron | 35.0% | |
| ATCGAGGTAAAGATTGTTGT+GGG | - | chr3_3:8016274-8016293 | Msa0440520:intron | 35.0% | |
| TGGAGTTTGCATCCAATAAA+TGG | - | chr3_3:8016456-8016475 | Msa0440520:intron | 35.0% | |
| TGTTCCAGAAGACCATTTAT+TGG | + | chr3_3:8016471-8016490 | None:intergenic | 35.0% | |
| !! | ATGGAAAGAGAGTATTCTCT+TGG | - | chr3_3:8016735-8016754 | Msa0440520:CDS | 35.0% |
| !! | TGGAAAGAGAGTATTCTCTT+GGG | - | chr3_3:8016736-8016755 | Msa0440520:CDS | 35.0% |
| TGTATCAATACGAGAGAAGT+CGG | + | chr3_3:8015256-8015275 | None:intergenic | 35.0% | |
| ! | CATTTGAAGTTTGGTTCACT+TGG | + | chr3_3:8015746-8015765 | None:intergenic | 35.0% |
| !!! | TAGGATCTGTCAGTTTTGTT+TGG | - | chr3_3:8015924-8015943 | Msa0440520:intron | 35.0% |
| !!! | AGGATCTGTCAGTTTTGTTT+GGG | - | chr3_3:8015925-8015944 | Msa0440520:intron | 35.0% |
| ! | TGTGATAGTGAGAAGATAGA+CGG | - | chr3_3:8016196-8016215 | Msa0440520:intron | 35.0% |
| GAAACAATGAAACCGTGTTT+CGG | - | chr3_3:8016243-8016262 | Msa0440520:intron | 35.0% | |
| ATCGAGGTAAAGATTGTTGT+GGG | - | chr3_3:8016274-8016293 | Msa0440520:intron | 35.0% | |
| TGGAGTTTGCATCCAATAAA+TGG | - | chr3_3:8016456-8016475 | Msa0440520:intron | 35.0% | |
| TGTTCCAGAAGACCATTTAT+TGG | + | chr3_3:8016471-8016490 | None:intergenic | 35.0% | |
| !! | ATGGAAAGAGAGTATTCTCT+TGG | - | chr3_3:8016735-8016754 | Msa0440520:CDS | 35.0% |
| !! | TGGAAAGAGAGTATTCTCTT+GGG | - | chr3_3:8016736-8016755 | Msa0440520:CDS | 35.0% |
| TTGAGATTTCAGATTGTCGC+CGG | - | chr3_3:8015347-8015366 | Msa0440520:intron | 40.0% | |
| CTTGAATCCTTACCAGAAGA+AGG | - | chr3_3:8015370-8015389 | Msa0440520:intron | 40.0% | |
| CTTCTTCTTCCAGTTATACG+TGG | + | chr3_3:8015684-8015703 | None:intergenic | 40.0% | |
| GAAACCAACAAGAACTCTCA+TGG | + | chr3_3:8016067-8016086 | None:intergenic | 40.0% | |
| CATCGAGGTAAAGATTGTTG+TGG | - | chr3_3:8016273-8016292 | Msa0440520:intron | 40.0% | |
| TTGTGTCAGTTTCTCTTTCC+AGG | - | chr3_3:8016427-8016446 | Msa0440520:intron | 40.0% | |
| TTTCTCTTTCCAGGTTAGAG+TGG | - | chr3_3:8016436-8016455 | Msa0440520:intron | 40.0% | |
| GCATCCAATAAATGGTCTTC+TGG | - | chr3_3:8016464-8016483 | Msa0440520:intron | 40.0% | |
| TCTGCCAGAAATTCTAGTGA+TGG | - | chr3_3:8016526-8016545 | Msa0440520:intron | 40.0% | |
| AGTTTCGCCTACTAAACGAA+AGG | - | chr3_3:8016568-8016587 | Msa0440520:intron | 40.0% | |
| !! | AAGTTTCTAGAATGCTGAGC+TGG | - | chr3_3:8016674-8016693 | Msa0440520:intron | 40.0% |
| ! | ATACTACTAGCCTAACCAAG+TGG | + | chr3_3:8016764-8016783 | None:intergenic | 40.0% |
| ATCTTCTTGATCTCATCAGC+TGG | - | chr3_3:8016853-8016872 | Msa0440520:CDS | 40.0% | |
| TTGAGATTTCAGATTGTCGC+CGG | - | chr3_3:8015347-8015366 | Msa0440520:intron | 40.0% | |
| CTTGAATCCTTACCAGAAGA+AGG | - | chr3_3:8015370-8015389 | Msa0440520:intron | 40.0% | |
| CTTCTTCTTCCAGTTATACG+TGG | + | chr3_3:8015684-8015703 | None:intergenic | 40.0% | |
| GAAACCAACAAGAACTCTCA+TGG | + | chr3_3:8016067-8016086 | None:intergenic | 40.0% | |
| CATCGAGGTAAAGATTGTTG+TGG | - | chr3_3:8016273-8016292 | Msa0440520:intron | 40.0% | |
| TTGTGTCAGTTTCTCTTTCC+AGG | - | chr3_3:8016427-8016446 | Msa0440520:intron | 40.0% | |
| TTTCTCTTTCCAGGTTAGAG+TGG | - | chr3_3:8016436-8016455 | Msa0440520:intron | 40.0% | |
| GCATCCAATAAATGGTCTTC+TGG | - | chr3_3:8016464-8016483 | Msa0440520:intron | 40.0% | |
| TCTGCCAGAAATTCTAGTGA+TGG | - | chr3_3:8016526-8016545 | Msa0440520:intron | 40.0% | |
| AGTTTCGCCTACTAAACGAA+AGG | - | chr3_3:8016568-8016587 | Msa0440520:intron | 40.0% | |
| !! | AAGTTTCTAGAATGCTGAGC+TGG | - | chr3_3:8016674-8016693 | Msa0440520:intron | 40.0% |
| ! | ATACTACTAGCCTAACCAAG+TGG | + | chr3_3:8016764-8016783 | None:intergenic | 40.0% |
| ATCTTCTTGATCTCATCAGC+TGG | - | chr3_3:8016853-8016872 | Msa0440520:CDS | 40.0% | |
| ! | GGCGACAATCTGAAATCTCA+AGG | + | chr3_3:8015348-8015367 | None:intergenic | 45.0% |
| CTTCTGGTAAGGATTCAAGC+CGG | + | chr3_3:8015369-8015388 | None:intergenic | 45.0% | |
| GATAGTCACTGCTGAAAGAG+AGG | + | chr3_3:8015404-8015423 | None:intergenic | 45.0% | |
| CATGACATGGTATTCAGCAG+GGG | + | chr3_3:8015635-8015654 | None:intergenic | 45.0% | |
| GCATGACATGGTATTCAGCA+GGG | + | chr3_3:8015636-8015655 | None:intergenic | 45.0% | |
| TGCATGACATGGTATTCAGC+AGG | + | chr3_3:8015637-8015656 | None:intergenic | 45.0% | |
| ATGCAAACTCCACTCTAACC+TGG | + | chr3_3:8016448-8016467 | None:intergenic | 45.0% | |
| TGGCAGAATTGCTGAAGTGT+GGG | + | chr3_3:8016513-8016532 | None:intergenic | 45.0% | |
| CCAGCCATCACTAGAATTTC+TGG | + | chr3_3:8016533-8016552 | None:intergenic | 45.0% | |
| CCAGAAATTCTAGTGATGGC+TGG | - | chr3_3:8016530-8016549 | Msa0440520:intron | 45.0% | |
| TTCTAGTGATGGCTGGTGAT+AGG | - | chr3_3:8016537-8016556 | Msa0440520:intron | 45.0% | |
| ATGGCTGGTGATAGGAATGA+GGG | - | chr3_3:8016545-8016564 | Msa0440520:intron | 45.0% | |
| GTGTGGTCCTTTCGTTTAGT+AGG | + | chr3_3:8016578-8016597 | None:intergenic | 45.0% | |
| TGTGGACAGGCCCAAAAAAA+AGG | - | chr3_3:8016608-8016627 | Msa0440520:intron | 45.0% | |
| ! | GGCGACAATCTGAAATCTCA+AGG | + | chr3_3:8015348-8015367 | None:intergenic | 45.0% |
| CTTCTGGTAAGGATTCAAGC+CGG | + | chr3_3:8015369-8015388 | None:intergenic | 45.0% | |
| GATAGTCACTGCTGAAAGAG+AGG | + | chr3_3:8015404-8015423 | None:intergenic | 45.0% | |
| CATGACATGGTATTCAGCAG+GGG | + | chr3_3:8015635-8015654 | None:intergenic | 45.0% | |
| GCATGACATGGTATTCAGCA+GGG | + | chr3_3:8015636-8015655 | None:intergenic | 45.0% | |
| TGCATGACATGGTATTCAGC+AGG | + | chr3_3:8015637-8015656 | None:intergenic | 45.0% | |
| ATGCAAACTCCACTCTAACC+TGG | + | chr3_3:8016448-8016467 | None:intergenic | 45.0% | |
| TGGCAGAATTGCTGAAGTGT+GGG | + | chr3_3:8016513-8016532 | None:intergenic | 45.0% | |
| CCAGCCATCACTAGAATTTC+TGG | + | chr3_3:8016533-8016552 | None:intergenic | 45.0% | |
| CCAGAAATTCTAGTGATGGC+TGG | - | chr3_3:8016530-8016549 | Msa0440520:intron | 45.0% | |
| TTCTAGTGATGGCTGGTGAT+AGG | - | chr3_3:8016537-8016556 | Msa0440520:intron | 45.0% | |
| ATGGCTGGTGATAGGAATGA+GGG | - | chr3_3:8016545-8016564 | Msa0440520:intron | 45.0% | |
| GTGTGGTCCTTTCGTTTAGT+AGG | + | chr3_3:8016578-8016597 | None:intergenic | 45.0% | |
| TGTGGACAGGCCCAAAAAAA+AGG | - | chr3_3:8016608-8016627 | Msa0440520:intron | 45.0% | |
| AGGCAGTCCTTCTTCTGGTA+AGG | + | chr3_3:8015380-8015399 | None:intergenic | 50.0% | |
| GTCACTGCTGAAAGAGAGGA+AGG | + | chr3_3:8015400-8015419 | None:intergenic | 50.0% | |
| ACAAGCAAGCTGTCAGAGCA+AGG | - | chr3_3:8015440-8015459 | Msa0440520:intron | 50.0% | |
| GGCAATGCTCACCAATGCAA+TGG | + | chr3_3:8015579-8015598 | None:intergenic | 50.0% | |
| GCGTCCATGAGAGTTCTTGT+TGG | - | chr3_3:8016060-8016079 | Msa0440520:intron | 50.0% | |
| ! | GAGAAGATAGACGGCTAGCT+AGG | - | chr3_3:8016205-8016224 | Msa0440520:intron | 50.0% |
| CGATGATGTGAGCCGAAACA+CGG | + | chr3_3:8016258-8016277 | None:intergenic | 50.0% | |
| TGTTTCGGCTCACATCATCG+AGG | - | chr3_3:8016258-8016277 | Msa0440520:intron | 50.0% | |
| CTGGCAGAATTGCTGAAGTG+TGG | + | chr3_3:8016514-8016533 | None:intergenic | 50.0% | |
| GATGGCTGGTGATAGGAATG+AGG | - | chr3_3:8016544-8016563 | Msa0440520:intron | 50.0% | |
| AAACGAAAGGACCACACTCG+AGG | - | chr3_3:8016581-8016600 | Msa0440520:intron | 50.0% | |
| GTATTCTCTTGGGAGCCACT+TGG | - | chr3_3:8016746-8016765 | Msa0440520:CDS | 50.0% | |
| AGGCAGTCCTTCTTCTGGTA+AGG | + | chr3_3:8015380-8015399 | None:intergenic | 50.0% | |
| GTCACTGCTGAAAGAGAGGA+AGG | + | chr3_3:8015400-8015419 | None:intergenic | 50.0% | |
| ACAAGCAAGCTGTCAGAGCA+AGG | - | chr3_3:8015440-8015459 | Msa0440520:intron | 50.0% | |
| GGCAATGCTCACCAATGCAA+TGG | + | chr3_3:8015579-8015598 | None:intergenic | 50.0% | |
| GCGTCCATGAGAGTTCTTGT+TGG | - | chr3_3:8016060-8016079 | Msa0440520:intron | 50.0% | |
| ! | GAGAAGATAGACGGCTAGCT+AGG | - | chr3_3:8016205-8016224 | Msa0440520:intron | 50.0% |
| CGATGATGTGAGCCGAAACA+CGG | + | chr3_3:8016258-8016277 | None:intergenic | 50.0% | |
| TGTTTCGGCTCACATCATCG+AGG | - | chr3_3:8016258-8016277 | Msa0440520:intron | 50.0% | |
| CTGGCAGAATTGCTGAAGTG+TGG | + | chr3_3:8016514-8016533 | None:intergenic | 50.0% | |
| GATGGCTGGTGATAGGAATG+AGG | - | chr3_3:8016544-8016563 | Msa0440520:intron | 50.0% | |
| AAACGAAAGGACCACACTCG+AGG | - | chr3_3:8016581-8016600 | Msa0440520:intron | 50.0% | |
| GTATTCTCTTGGGAGCCACT+TGG | - | chr3_3:8016746-8016765 | Msa0440520:CDS | 50.0% | |
| GAGGAAGGCAGTCCTTCTTC+TGG | + | chr3_3:8015385-8015404 | None:intergenic | 55.0% | |
| AGCAAGCTGTCAGAGCAAGG+AGG | - | chr3_3:8015443-8015462 | Msa0440520:intron | 55.0% | |
| GCAAGCTGTCAGAGCAAGGA+GGG | - | chr3_3:8015444-8015463 | Msa0440520:intron | 55.0% | |
| GACCACACTCGAGGAGTTTG+TGG | - | chr3_3:8016590-8016609 | Msa0440520:intron | 55.0% | |
| GTCCACAAACTCCTCGAGTG+TGG | + | chr3_3:8016595-8016614 | None:intergenic | 55.0% | |
| CACTCGAGGAGTTTGTGGAC+AGG | - | chr3_3:8016595-8016614 | Msa0440520:intron | 55.0% | |
| CTCTTGGGAGCCACTTGGTT+AGG | - | chr3_3:8016751-8016770 | Msa0440520:CDS | 55.0% | |
| GAGGAAGGCAGTCCTTCTTC+TGG | + | chr3_3:8015385-8015404 | None:intergenic | 55.0% | |
| AGCAAGCTGTCAGAGCAAGG+AGG | - | chr3_3:8015443-8015462 | Msa0440520:intron | 55.0% | |
| GCAAGCTGTCAGAGCAAGGA+GGG | - | chr3_3:8015444-8015463 | Msa0440520:intron | 55.0% | |
| GACCACACTCGAGGAGTTTG+TGG | - | chr3_3:8016590-8016609 | Msa0440520:intron | 55.0% | |
| GTCCACAAACTCCTCGAGTG+TGG | + | chr3_3:8016595-8016614 | None:intergenic | 55.0% | |
| CACTCGAGGAGTTTGTGGAC+AGG | - | chr3_3:8016595-8016614 | Msa0440520:intron | 55.0% | |
| CTCTTGGGAGCCACTTGGTT+AGG | - | chr3_3:8016751-8016770 | Msa0440520:CDS | 55.0% | |
| CAGAGCAAGGAGGGACAGAG+TGG | - | chr3_3:8015453-8015472 | Msa0440520:intron | 60.0% | |
| GCTGAGCTGGCAGCGAACTT+TGG | - | chr3_3:8016687-8016706 | Msa0440520:intron | 60.0% | |
| CAGAGCAAGGAGGGACAGAG+TGG | - | chr3_3:8015453-8015472 | Msa0440520:intron | 60.0% | |
| GCTGAGCTGGCAGCGAACTT+TGG | - | chr3_3:8016687-8016706 | Msa0440520:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 8015229 | 8016897 | 8015229 | ID=Msa0440520;Name=Msa0440520 |
| chr3_3 | mRNA | 8015229 | 8016897 | 8015229 | ID=Msa0440520-mRNA-1;Parent=Msa0440520;Name=Msa0440520-mRNA-1;_AED=0.43;_eAED=0.79;_QI=0|0|0|1|1|1|3|0|146 |
| chr3_3 | exon | 8016712 | 8016897 | 8016712 | ID=Msa0440520-mRNA-1:exon:1718;Parent=Msa0440520-mRNA-1 |
| chr3_3 | exon | 8015477 | 8015677 | 8015477 | ID=Msa0440520-mRNA-1:exon:1717;Parent=Msa0440520-mRNA-1 |
| chr3_3 | exon | 8015229 | 8015282 | 8015229 | ID=Msa0440520-mRNA-1:exon:1716;Parent=Msa0440520-mRNA-1 |
| chr3_3 | CDS | 8016712 | 8016897 | 8016712 | ID=Msa0440520-mRNA-1:cds;Parent=Msa0440520-mRNA-1 |
| chr3_3 | CDS | 8015477 | 8015677 | 8015477 | ID=Msa0440520-mRNA-1:cds;Parent=Msa0440520-mRNA-1 |
| chr3_3 | CDS | 8015229 | 8015282 | 8015229 | ID=Msa0440520-mRNA-1:cds;Parent=Msa0440520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
