Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454840 | A0A072U5P8 | 94.872 | 429 | 19 | 2 | 1 | 429 | 1 | 426 | 0.0 | 839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa1454840 | 0.802821 | 4.677688e-49 | -8.615850e-47 |
| Msa1372580 | Msa1454840 | 0.805163 | 1.524031e-49 | -8.615850e-47 |
| Msa1403800 | Msa1454840 | 0.814090 | 1.838600e-51 | -8.615850e-47 |
| Msa1423450 | Msa1454840 | 0.803855 | 2.855742e-49 | -8.615850e-47 |
| Msa0638610 | Msa1454840 | 0.801823 | 7.506369e-49 | -8.615850e-47 |
| Msa0307830 | Msa1454840 | -0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0853170 | Msa1454840 | 0.801731 | 7.839761e-49 | -8.615850e-47 |
| Msa0877410 | Msa1454840 | 0.811293 | 7.527529e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454840 | MtrunA17_Chr7g0275901 | 94.872 | 429 | 19 | 2 | 1 | 429 | 1 | 426 | 0.0 | 839 |
| Msa1454840 | MtrunA17_Chr8g0346681 | 45.977 | 435 | 162 | 11 | 1 | 427 | 1 | 370 | 3.41e-109 | 326 |
| Msa1454840 | MtrunA17_Chr3g0127021 | 42.066 | 271 | 126 | 5 | 162 | 427 | 170 | 414 | 1.97e-46 | 165 |
| Msa1454840 | MtrunA17_Chr1g0146861 | 29.524 | 420 | 170 | 14 | 74 | 427 | 41 | 400 | 1.54e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454840 | AT2G46550.1 | 38.393 | 448 | 197 | 16 | 1 | 425 | 1 | 392 | 2.10e-73 | 236 |
| Msa1454840 | AT2G46550.3 | 37.883 | 359 | 161 | 13 | 77 | 425 | 18 | 324 | 1.93e-58 | 194 |
| Msa1454840 | AT2G46550.2 | 42.754 | 276 | 107 | 10 | 153 | 425 | 25 | 252 | 3.92e-56 | 186 |
| Msa1454840 | AT1G01240.4 | 36.111 | 432 | 169 | 17 | 1 | 427 | 1 | 330 | 1.33e-49 | 171 |
| Msa1454840 | AT1G01240.3 | 36.111 | 432 | 169 | 17 | 1 | 427 | 1 | 330 | 1.33e-49 | 171 |
| Msa1454840 | AT1G01240.1 | 36.111 | 432 | 169 | 17 | 1 | 427 | 1 | 330 | 1.33e-49 | 171 |
| Msa1454840 | AT1G01240.5 | 36.111 | 432 | 169 | 17 | 1 | 427 | 1 | 330 | 1.33e-49 | 171 |
| Msa1454840 | AT1G01240.2 | 36.111 | 432 | 169 | 17 | 1 | 427 | 1 | 330 | 1.33e-49 | 171 |
Find 105 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTCTCTGATTCTTCTTT+TGG | 0.140162 | tig0035450:-24341 | Msa1454840:five_prime_UTR |
| CCAAAGAAGAAGCATCTTTC+TGG | 0.182416 | tig0035450:-22742 | Msa1454840:CDS |
| CCAGAAAGATGCTTCTTCTT+TGG | 0.232804 | tig0035450:+22742 | None:intergenic |
| ATTTCTCTTGAAGTATCTTT+TGG | 0.248234 | tig0035450:-21730 | Msa1454840:three_prime_UTR |
| GCCCAGAACCAGACTATTCT+TGG | 0.252939 | tig0035450:-22876 | Msa1454840:CDS |
| TATGCTGTTGCCATTGCTTT+AGG | 0.267913 | tig0035450:-22009 | Msa1454840:CDS |
| GATAGCTAGTGATGAAATTA+AGG | 0.280932 | tig0035450:-23016 | Msa1454840:CDS |
| ATCCAAGAATAGTCTGGTTC+TGG | 0.292495 | tig0035450:+22874 | None:intergenic |
| TTACTAATAATACTAGAATA+AGG | 0.303021 | tig0035450:+22715 | None:intergenic |
| GCTAATTATGGATATCAAAA+AGG | 0.305471 | tig0035450:-23087 | Msa1454840:CDS |
| GTTGGAGCAGGCTTGCTATT+AGG | 0.310067 | tig0035450:-21976 | Msa1454840:CDS |
| TCTAGCATTTCCTGAACTAA+TGG | 0.323081 | tig0035450:-22977 | Msa1454840:CDS |
| GGTTGAACTGGGAAAACTTC+TGG | 0.323814 | tig0035450:+22678 | None:intergenic |
| CTCCAATAATTGAGCTTTGC+TGG | 0.324081 | tig0035450:+22347 | None:intergenic |
| TATGTTGTAATATCACAATT+TGG | 0.329229 | tig0035450:+22030 | None:intergenic |
| CACCAGCAAAGCTCAATTAT+TGG | 0.329574 | tig0035450:-22349 | Msa1454840:CDS |
| TTGCACTCACAAGCTAATTA+TGG | 0.335392 | tig0035450:-23099 | Msa1454840:CDS |
| GCCATCACATCCATTAGTTC+AGG | 0.337758 | tig0035450:+22967 | None:intergenic |
| ACACAGGGAAATTTAGATTC+AGG | 0.343083 | tig0035450:-22649 | Msa1454840:CDS |
| TTCTCTTTCACCCCTGCCAT+TGG | 0.359020 | tig0035450:+22059 | None:intergenic |
| GCTTTAGGATTAAGTCTTGT+TGG | 0.360663 | tig0035450:-21994 | Msa1454840:CDS |
| AGGATTGGTACATAGGAATC+AGG | 0.378010 | tig0035450:-22629 | Msa1454840:CDS |
| GAAGATCACAATTCTCAATA+TGG | 0.391129 | tig0035450:+22770 | None:intergenic |
| TTCAAGTGCTACATCAAAAC+TGG | 0.393123 | tig0035450:-23235 | Msa1454840:CDS |
| ATCTGATTCATCTGCTGTAT+TGG | 0.394510 | tig0035450:+23197 | None:intergenic |
| TAGATTCAGGATTGGTACAT+AGG | 0.411631 | tig0035450:-22636 | Msa1454840:CDS |
| CTGTGTATGAGCGGTTGAAC+TGG | 0.416340 | tig0035450:+22666 | None:intergenic |
| TTGATGTAGCACTTGAAGAT+TGG | 0.418611 | tig0035450:+23241 | None:intergenic |
| GAAAGATGCTTCTTCTTTGG+AGG | 0.430323 | tig0035450:+22745 | None:intergenic |
| TTGCGTCTGACAAATCTTCA+AGG | 0.446180 | tig0035450:-22576 | Msa1454840:intron |
| GATTCATCTGCTGTATTGGC+AGG | 0.452107 | tig0035450:+23201 | None:intergenic |
| GTTAAGTGCATTGGAGGAAG+AGG | 0.452778 | tig0035450:-23049 | Msa1454840:CDS |
| GGATTAAGTCTTGTTGGAGC+AGG | 0.461416 | tig0035450:-21988 | Msa1454840:CDS |
| CAGGGGCTTTCTGCCAATGA+AGG | 0.464814 | tig0035450:-22610 | Msa1454840:CDS |
| TACTAATAATACTAGAATAA+GGG | 0.466017 | tig0035450:+22716 | None:intergenic |
| AGCAGACATATTCCAATGGC+AGG | 0.469576 | tig0035450:-22071 | Msa1454840:CDS |
| AAAATACAAGAGCCCTTCAT+TGG | 0.470402 | tig0035450:+22597 | None:intergenic |
| TCCAAGAATAGTCTGGTTCT+GGG | 0.471268 | tig0035450:+22875 | None:intergenic |
| CTTTCAATCCAAGAATAGTC+TGG | 0.471289 | tig0035450:+22868 | None:intergenic |
| ATTGATTAAACTGTTGCAGC+TGG | 0.473681 | tig0035450:-22199 | Msa1454840:CDS |
| TTCTTGGATTGAAAGTGATA+AGG | 0.475129 | tig0035450:-22860 | Msa1454840:CDS |
| TGTTGTCCGCCACCATGGCC+CGG | 0.476916 | tig0035450:+22837 | None:intergenic |
| ATCAGTTTGGACTTGCAACT+TGG | 0.477628 | tig0035450:-22432 | Msa1454840:intron |
| AAAATCATTTGTTTGCTTGG+AGG | 0.479044 | tig0035450:+22900 | None:intergenic |
| TTGCTTGGAGGTTACCGAGC+AGG | 0.481247 | tig0035450:+22912 | None:intergenic |
| TATTTCCAGTGGATCTTCCA+TGG | 0.487747 | tig0035450:-22128 | Msa1454840:CDS |
| AGATTGGCGACAAGCCAACT+TGG | 0.491218 | tig0035450:+23257 | None:intergenic |
| ATAAGGCCGGGCCATGGTGG+CGG | 0.491452 | tig0035450:-22843 | Msa1454840:CDS |
| GGGAAATTTAGATTCAGGAT+TGG | 0.496968 | tig0035450:-22644 | Msa1454840:CDS |
| ACATCAAAACTGGTTGATGC+TGG | 0.497455 | tig0035450:-23225 | Msa1454840:CDS |
| AAATGAAAAGTTAAGTGCAT+TGG | 0.497615 | tig0035450:-23058 | Msa1454840:CDS |
| TGAAAAGTTAAGTGCATTGG+AGG | 0.510566 | tig0035450:-23055 | Msa1454840:CDS |
| CAGTTCAACCGCTCATACAC+AGG | 0.511335 | tig0035450:-22665 | Msa1454840:CDS |
| CTTTAAATATTAACTACTGA+TGG | 0.513946 | tig0035450:-23355 | Msa1454840:exon |
| GTCATCCATCATCTGACCCT+AGG | 0.515700 | tig0035450:-23128 | Msa1454840:CDS |
| AGATGCTTCTTCTTTGGAGG+AGG | 0.518046 | tig0035450:+22748 | None:intergenic |
| CTGTCTGTTGTCCGCCACCA+TGG | 0.521220 | tig0035450:+22832 | None:intergenic |
| TGCTAATCGATGCTTTGTGC+AGG | 0.532243 | tig0035450:-23298 | Msa1454840:CDS |
| GAGCAGGCTTGCTATTAGGA+TGG | 0.540675 | tig0035450:-21972 | Msa1454840:CDS |
| GGATTGGTACATAGGAATCA+GGG | 0.541851 | tig0035450:-22628 | Msa1454840:CDS |
| TGGATTGAAAGTGATAAGGC+CGG | 0.545026 | tig0035450:-22856 | Msa1454840:CDS |
| GACATCCATGGAAGATCCAC+TGG | 0.560161 | tig0035450:+22123 | None:intergenic |
| TCCTGAACTAATGGATGTGA+TGG | 0.562511 | tig0035450:-22968 | Msa1454840:CDS |
| CACCACCTAGGGTCAGATGA+TGG | 0.565299 | tig0035450:+23123 | None:intergenic |
| TATTAGGATGGACTGTGGGT+TGG | 0.567369 | tig0035450:-21960 | Msa1454840:CDS |
| CATCATCTGACCCTAGGTGG+TGG | 0.567607 | tig0035450:-23122 | Msa1454840:CDS |
| CTACGTTCATACGACATCCA+TGG | 0.568043 | tig0035450:+22111 | None:intergenic |
| TTGCTATTAGGATGGACTGT+GGG | 0.569376 | tig0035450:-21964 | Msa1454840:CDS |
| AGATTTGCTGTTAAAATGAG+TGG | 0.571296 | tig0035450:+23158 | None:intergenic |
| GCAGAGTCAACAGATTTCTG+AGG | 0.574880 | tig0035450:-22376 | Msa1454840:CDS |
| GAGTGATTTGTGTGAAACAA+AGG | 0.582105 | tig0035450:+22795 | None:intergenic |
| AAGACTTAATCCTAAAGCAA+TGG | 0.585964 | tig0035450:+21999 | None:intergenic |
| GGATTGAAAGTGATAAGGCC+GGG | 0.589833 | tig0035450:-22855 | Msa1454840:CDS |
| AGGGGCTTTCTGCCAATGAA+GGG | 0.590408 | tig0035450:-22609 | Msa1454840:CDS |
| GATTGGCGACAAGCCAACTT+GGG | 0.592136 | tig0035450:+23258 | None:intergenic |
| TGTGAGTGCAACCACCACCT+AGG | 0.594119 | tig0035450:+23111 | None:intergenic |
| ATCCATCATCTGACCCTAGG+TGG | 0.596001 | tig0035450:-23125 | Msa1454840:CDS |
| CAGAGTCAACAGATTTCTGA+GGG | 0.597794 | tig0035450:-22375 | Msa1454840:CDS |
| CACTCAAACCCTCGTACATG+AGG | 0.600673 | tig0035450:-22406 | Msa1454840:CDS |
| AAAGTGATAAGGCCGGGCCA+TGG | 0.603951 | tig0035450:-22849 | Msa1454840:CDS |
| GTGAGTGCAACCACCACCTA+GGG | 0.604394 | tig0035450:+23112 | None:intergenic |
| TAAATATTAACTACTGATGG+CGG | 0.606077 | tig0035450:-23352 | Msa1454840:exon |
| GTCACTCTCAAACACGTGCA+AGG | 0.608247 | tig0035450:-22317 | Msa1454840:CDS |
| GCTCGATTCATTGCAGAAAG+CGG | 0.611749 | tig0035450:+24405 | None:intergenic |
| AACCTCAACTCTATTTCCAG+TGG | 0.611980 | tig0035450:-22139 | Msa1454840:CDS |
| GCTTGACATCCTCATGTACG+AGG | 0.613036 | tig0035450:+22397 | None:intergenic |
| AATGGCAGGGGTGAAAGAGA+AGG | 0.613353 | tig0035450:-22057 | Msa1454840:CDS |
| TGATGGCGGCAGCAGAAGTG+AGG | 0.618701 | tig0035450:-23338 | Msa1454840:CDS |
| TGTGTATGAGCGGTTGAACT+GGG | 0.619016 | tig0035450:+22667 | None:intergenic |
| AACACGTGCAAGGCAAGCAG+AGG | 0.619123 | tig0035450:-22307 | Msa1454840:CDS |
| GTGATAAGGCCGGGCCATGG+TGG | 0.623309 | tig0035450:-22846 | Msa1454840:CDS |
| CTTGCTATTAGGATGGACTG+TGG | 0.623342 | tig0035450:-21965 | Msa1454840:CDS |
| CAGACATATTCCAATGGCAG+GGG | 0.625436 | tig0035450:-22069 | Msa1454840:CDS |
| GCAGACATATTCCAATGGCA+GGG | 0.627564 | tig0035450:-22070 | Msa1454840:CDS |
| CAGCAAAGCTCAATTATTGG+AGG | 0.633115 | tig0035450:-22346 | Msa1454840:CDS |
| TAAATTTCCCTGTGTATGAG+CGG | 0.633718 | tig0035450:+22657 | None:intergenic |
| CTTGACATCCTCATGTACGA+GGG | 0.639321 | tig0035450:+22398 | None:intergenic |
| ATCCACTGGAAATAGAGTTG+AGG | 0.643098 | tig0035450:+22137 | None:intergenic |
| CAGCAGAAGTGAGGACTCTG+TGG | 0.645946 | tig0035450:-23329 | Msa1454840:CDS |
| AGAAAGCAGACATATTCCAA+TGG | 0.647344 | tig0035450:-22075 | Msa1454840:CDS |
| AGTTCAACCGCTCATACACA+GGG | 0.648086 | tig0035450:-22664 | Msa1454840:CDS |
| GATTGGTACATAGGAATCAG+GGG | 0.660580 | tig0035450:-22627 | Msa1454840:CDS |
| ATATTACAGAACTACGAACA+AGG | 0.668685 | tig0035450:+21931 | None:intergenic |
| GATGGCAAAACATGAGACAA+TGG | 0.684262 | tig0035450:-22950 | Msa1454840:CDS |
| CGTATGAACGTAGAAAATCA+CGG | 0.694333 | tig0035450:-22101 | Msa1454840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAGTTTTATCTTATT+TGG | - | tig0035450:22595-22614 | Msa1454840:CDS | 10.0% |
| !!! | TTACATAATCTTTTTTTTTT+TGG | + | tig0035450:24333-24352 | None:intergenic | 10.0% |
| !! | TTAAATGACACAAATTATAA+TGG | + | tig0035450:21925-21944 | None:intergenic | 15.0% |
| !!! | AATAGCTTCTTTTTTTTTAA+GGG | + | tig0035450:22261-22280 | None:intergenic | 15.0% |
| !!! | AAATAGCTTCTTTTTTTTTA+AGG | + | tig0035450:22262-22281 | None:intergenic | 15.0% |
| !! | TACTAATAATACTAGAATAA+GGG | + | tig0035450:23397-23416 | None:intergenic | 15.0% |
| !! | TTACTAATAATACTAGAATA+AGG | + | tig0035450:23398-23417 | None:intergenic | 15.0% |
| !!! | TTTTATAATTAGGGCTAAAT+AGG | - | tig0035450:22134-22153 | Msa1454840:CDS | 20.0% |
| !! | TTTATAATTAGGGCTAAATA+GGG | - | tig0035450:22135-22154 | Msa1454840:CDS | 20.0% |
| !! | ATATACTCTTCATTTGTATT+AGG | - | tig0035450:22377-22396 | Msa1454840:CDS | 20.0% |
| !!! | AATGTTATACTAATTTTGGT+GGG | + | tig0035450:22496-22515 | None:intergenic | 20.0% |
| !! | TTATAAACATGTTGCTAAAA+CGG | - | tig0035450:22542-22561 | Msa1454840:intron | 20.0% |
| !! | CTTTAAATATTAACTACTGA+TGG | - | tig0035450:22755-22774 | Msa1454840:CDS | 20.0% |
| !!! | GTTATATGATTGATAATGAT+AGG | + | tig0035450:23566-23585 | None:intergenic | 20.0% |
| !! | TGATTTGATTAATATCAGTT+TGG | - | tig0035450:23665-23684 | Msa1454840:intron | 20.0% |
| !!! | AGTTACACTTATTTTTAAAC+AGG | - | tig0035450:23863-23882 | Msa1454840:intron | 20.0% |
| !! | TATGTTGTAATATCACAATT+TGG | + | tig0035450:24083-24102 | None:intergenic | 20.0% |
| !! | TCGTTATCATTCTTCTTTTT+CGG | + | tig0035450:21730-21749 | None:intergenic | 25.0% |
| ! | TCTATGTCTACTTCATAATT+TGG | - | tig0035450:21866-21885 | Msa1454840:three_prime_UTR | 25.0% |
| ! | CTATGTCTACTTCATAATTT+GGG | - | tig0035450:21867-21886 | Msa1454840:three_prime_UTR | 25.0% |
| ! | GATTGAGAAGAAAATTTGAA+TGG | + | tig0035450:22013-22032 | None:intergenic | 25.0% |
| ! | ATTGTGTAAATCTACTTATG+TGG | + | tig0035450:22210-22229 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGGGCTAAACTTT+TGG | + | tig0035450:22249-22268 | None:intergenic | 25.0% |
| !! | CAATGTTATACTAATTTTGG+TGG | + | tig0035450:22497-22516 | None:intergenic | 25.0% |
| ! | CACCAAAATTAGTATAACAT+TGG | - | tig0035450:22495-22514 | Msa1454840:intron | 25.0% |
| !! | AGCCAATGTTATACTAATTT+TGG | + | tig0035450:22500-22519 | None:intergenic | 25.0% |
| ! | AAAATTAGTATAACATTGGC+TGG | - | tig0035450:22499-22518 | Msa1454840:intron | 25.0% |
| ! | TATAGTAATTGTCTGAATTC+TGG | - | tig0035450:22565-22584 | Msa1454840:intron | 25.0% |
| ! | TAAATATTAACTACTGATGG+CGG | - | tig0035450:22758-22777 | Msa1454840:CDS | 25.0% |
| ! | GCTAATTATGGATATCAAAA+AGG | - | tig0035450:23023-23042 | Msa1454840:CDS | 25.0% |
| ! | AAATGAAAAGTTAAGTGCAT+TGG | - | tig0035450:23052-23071 | Msa1454840:CDS | 25.0% |
| !!! | ATTTCTCTTGAAGTATCTTT+TGG | - | tig0035450:24380-24399 | Msa1454840:five_prime_UTR | 25.0% |
| !!! | TTTCTCTTGAAGTATCTTTT+GGG | - | tig0035450:24381-24400 | Msa1454840:five_prime_UTR | 25.0% |
| ! | TCATTCTCTGATTCTTCTTT+TGG | - | tig0035450:21769-21788 | Msa1454840:three_prime_UTR | 30.0% |
| TTTGATGAATCGTGTCTTAA+TGG | - | tig0035450:22071-22090 | Msa1454840:CDS | 30.0% | |
| TATGACATTACTATCAGAGT+CGG | + | tig0035450:22103-22122 | None:intergenic | 30.0% | |
| AATCTACTTATGTGGTACAA+AGG | + | tig0035450:22202-22221 | None:intergenic | 30.0% | |
| TGTTAACATGTGATTTCAGA+AGG | + | tig0035450:22318-22337 | None:intergenic | 30.0% | |
| ATTAGGTTATTATGCATGCA+TGG | - | tig0035450:22394-22413 | Msa1454840:CDS | 30.0% | |
| TTATGCATGCATGGTAAAAT+AGG | - | tig0035450:22403-22422 | Msa1454840:CDS | 30.0% | |
| TTAGCCATAATGTGGAAAAA+AGG | + | tig0035450:22624-22643 | None:intergenic | 30.0% | |
| TACAAACATTAGCCATAATG+TGG | + | tig0035450:22632-22651 | None:intergenic | 30.0% | |
| TTCACATAAATCCGTTGTAA+TGG | - | tig0035450:22723-22742 | Msa1454840:CDS | 30.0% | |
| !! | AGATTTGCTGTTAAAATGAG+TGG | + | tig0035450:22955-22974 | None:intergenic | 30.0% |
| GATAGCTAGTGATGAAATTA+AGG | - | tig0035450:23094-23113 | Msa1454840:CDS | 30.0% | |
| AAAATCATTTGTTTGCTTGG+AGG | + | tig0035450:23213-23232 | None:intergenic | 30.0% | |
| GCAAAAATCATTTGTTTGCT+TGG | + | tig0035450:23216-23235 | None:intergenic | 30.0% | |
| TTCTTGGATTGAAAGTGATA+AGG | - | tig0035450:23250-23269 | Msa1454840:CDS | 30.0% | |
| GAAGATCACAATTCTCAATA+TGG | + | tig0035450:23343-23362 | None:intergenic | 30.0% | |
| TTAAGATCTCTTGTAGTTTG+TGG | - | tig0035450:23598-23617 | Msa1454840:intron | 30.0% | |
| AAGACTTAATCCTAAAGCAA+TGG | + | tig0035450:24114-24133 | None:intergenic | 30.0% | |
| ATATTACAGAACTACGAACA+AGG | + | tig0035450:24182-24201 | None:intergenic | 30.0% | |
| !! | TTTTTGTGATGATGAGAAAC+AGG | - | tig0035450:24356-24375 | Msa1454840:five_prime_UTR | 30.0% |
| !! | TTCTCTTGAAGTATCTTTTG+GGG | - | tig0035450:24382-24401 | Msa1454840:five_prime_UTR | 30.0% |
| ! | CTCTGATTCTTCTTTTGGAT+TGG | - | tig0035450:21774-21793 | Msa1454840:three_prime_UTR | 35.0% |
| ! | CACATGCTCAATTTTTCTCT+TGG | - | tig0035450:21819-21838 | Msa1454840:three_prime_UTR | 35.0% |
| ATAAACGCAAGAGGTAGAAA+AGG | + | tig0035450:22039-22058 | None:intergenic | 35.0% | |
| AAGGCAAACCAAACCAAAAT+TGG | + | tig0035450:22183-22202 | None:intergenic | 35.0% | |
| TACACAATCAGATGACATGA+AGG | - | tig0035450:22222-22241 | Msa1454840:CDS | 35.0% | |
| ATATTGCCATGTAGGCATTT+AGG | + | tig0035450:22361-22380 | None:intergenic | 35.0% | |
| ! | TGAAGAGTATATTGCCATGT+AGG | + | tig0035450:22369-22388 | None:intergenic | 35.0% |
| ATGGTAAAATAGGTGGAACA+GGG | - | tig0035450:22413-22432 | Msa1454840:CDS | 35.0% | |
| !! | GTTATACTAATTTTGGTGGG+AGG | + | tig0035450:22493-22512 | None:intergenic | 35.0% |
| !!! | GCTTCCTTTTTTCCACATTA+TGG | - | tig0035450:22617-22636 | Msa1454840:CDS | 35.0% |
| AACATTGACATACAGAAGAC+TGG | + | tig0035450:22668-22687 | None:intergenic | 35.0% | |
| AGCATCTGAATCCATTACAA+CGG | + | tig0035450:22737-22756 | None:intergenic | 35.0% | |
| TTGATGTAGCACTTGAAGAT+TGG | + | tig0035450:22872-22891 | None:intergenic | 35.0% | |
| TTCAAGTGCTACATCAAAAC+TGG | - | tig0035450:22875-22894 | Msa1454840:CDS | 35.0% | |
| ATCTGATTCATCTGCTGTAT+TGG | + | tig0035450:22916-22935 | None:intergenic | 35.0% | |
| TTGCACTCACAAGCTAATTA+TGG | - | tig0035450:23011-23030 | Msa1454840:CDS | 35.0% | |
| TGAAAAGTTAAGTGCATTGG+AGG | - | tig0035450:23055-23074 | Msa1454840:CDS | 35.0% | |
| TCTAGCATTTCCTGAACTAA+TGG | - | tig0035450:23133-23152 | Msa1454840:CDS | 35.0% | |
| CTTTCAATCCAAGAATAGTC+TGG | + | tig0035450:23245-23264 | None:intergenic | 35.0% | |
| ! | GAGTGATTTGTGTGAAACAA+AGG | + | tig0035450:23318-23337 | None:intergenic | 35.0% |
| TAAATTTCCCTGTGTATGAG+CGG | + | tig0035450:23456-23475 | None:intergenic | 35.0% | |
| ACACAGGGAAATTTAGATTC+AGG | - | tig0035450:23461-23480 | Msa1454840:intron | 35.0% | |
| GGGAAATTTAGATTCAGGAT+TGG | - | tig0035450:23466-23485 | Msa1454840:intron | 35.0% | |
| ! | TAGATTCAGGATTGGTACAT+AGG | - | tig0035450:23474-23493 | Msa1454840:intron | 35.0% |
| AAAATACAAGAGCCCTTCAT+TGG | + | tig0035450:23516-23535 | None:intergenic | 35.0% | |
| GAGATCTTAACACGATAATG+TGG | + | tig0035450:23588-23607 | None:intergenic | 35.0% | |
| ATTGATTAAACTGTTGCAGC+TGG | - | tig0035450:23911-23930 | Msa1454840:intron | 35.0% | |
| CGTATGAACGTAGAAAATCA+CGG | - | tig0035450:24009-24028 | Msa1454840:intron | 35.0% | |
| AGAAAGCAGACATATTCCAA+TGG | - | tig0035450:24035-24054 | Msa1454840:intron | 35.0% | |
| !! | GCTTTAGGATTAAGTCTTGT+TGG | - | tig0035450:24116-24135 | Msa1454840:intron | 35.0% |
| !! | TTGAAGTATCTTTTGGGGAT+AGG | - | tig0035450:24387-24406 | Msa1454840:five_prime_UTR | 35.0% |
| ATGATGCAGATAAACGCAAG+AGG | + | tig0035450:22048-22067 | None:intergenic | 40.0% | |
| !! | GTTTTGCTCCTTTGCCATTT+CGG | - | tig0035450:22157-22176 | Msa1454840:CDS | 40.0% |
| AAAATTGGCCGAAATGGCAA+AGG | + | tig0035450:22168-22187 | None:intergenic | 40.0% | |
| !! | TTTGCCATTTCGGCCAATTT+TGG | - | tig0035450:22167-22186 | Msa1454840:CDS | 40.0% |
| CAAACCAAAATTGGCCGAAA+TGG | + | tig0035450:22174-22193 | None:intergenic | 40.0% | |
| !!! | CATTTCGGCCAATTTTGGTT+TGG | - | tig0035450:22172-22191 | Msa1454840:CDS | 40.0% |
| ! | GTAGGCATTTAGGATCGATA+GGG | + | tig0035450:22351-22370 | None:intergenic | 40.0% |
| ! | TGTAGGCATTTAGGATCGAT+AGG | + | tig0035450:22352-22371 | None:intergenic | 40.0% |
| ATCGATCCTAAATGCCTACA+TGG | - | tig0035450:22352-22371 | Msa1454840:CDS | 40.0% | |
| TGCATGCATGGTAAAATAGG+TGG | - | tig0035450:22406-22425 | Msa1454840:CDS | 40.0% | |
| CATGGTAAAATAGGTGGAAC+AGG | - | tig0035450:22412-22431 | Msa1454840:CDS | 40.0% | |
| !! | TAATTTTGGTGGGAGGAAGA+TGG | + | tig0035450:22486-22505 | None:intergenic | 40.0% |
| ! | ACATCAAAACTGGTTGATGC+TGG | - | tig0035450:22885-22904 | Msa1454840:CDS | 40.0% |
| ! | TCCTGAACTAATGGATGTGA+TGG | - | tig0035450:23142-23161 | Msa1454840:CDS | 40.0% |
| GATGGCAAAACATGAGACAA+TGG | - | tig0035450:23160-23179 | Msa1454840:CDS | 40.0% | |
| !! | GATTGATTCTTTTGCCTGCT+CGG | - | tig0035450:23184-23203 | Msa1454840:CDS | 40.0% |
| !! | TCCAAGAATAGTCTGGTTCT+GGG | + | tig0035450:23238-23257 | None:intergenic | 40.0% |
| ! | ATCCAAGAATAGTCTGGTTC+TGG | + | tig0035450:23239-23258 | None:intergenic | 40.0% |
| TGGATTGAAAGTGATAAGGC+CGG | - | tig0035450:23254-23273 | Msa1454840:CDS | 40.0% | |
| GAAAGATGCTTCTTCTTTGG+AGG | + | tig0035450:23368-23387 | None:intergenic | 40.0% | |
| CCAGAAAGATGCTTCTTCTT+TGG | + | tig0035450:23371-23390 | None:intergenic | 40.0% | |
| !! | CCAAAGAAGAAGCATCTTTC+TGG | - | tig0035450:23368-23387 | Msa1454840:intron | 40.0% |
| ! | AGGATTGGTACATAGGAATC+AGG | - | tig0035450:23481-23500 | Msa1454840:intron | 40.0% |
| ! | GGATTGGTACATAGGAATCA+GGG | - | tig0035450:23482-23501 | Msa1454840:intron | 40.0% |
| GATTGGTACATAGGAATCAG+GGG | - | tig0035450:23483-23502 | Msa1454840:intron | 40.0% | |
| TTGCGTCTGACAAATCTTCA+AGG | - | tig0035450:23534-23553 | Msa1454840:intron | 40.0% | |
| ATCAGTTTGGACTTGCAACT+TGG | - | tig0035450:23678-23697 | Msa1454840:intron | 40.0% | |
| CAGAGTCAACAGATTTCTGA+GGG | - | tig0035450:23735-23754 | Msa1454840:intron | 40.0% | |
| CACCAGCAAAGCTCAATTAT+TGG | - | tig0035450:23761-23780 | Msa1454840:intron | 40.0% | |
| CTCCAATAATTGAGCTTTGC+TGG | + | tig0035450:23766-23785 | None:intergenic | 40.0% | |
| CAGCAAAGCTCAATTATTGG+AGG | - | tig0035450:23764-23783 | Msa1454840:intron | 40.0% | |
| AACCTCAACTCTATTTCCAG+TGG | - | tig0035450:23971-23990 | Msa1454840:intron | 40.0% | |
| ATCCACTGGAAATAGAGTTG+AGG | + | tig0035450:23976-23995 | None:intergenic | 40.0% | |
| TATTTCCAGTGGATCTTCCA+TGG | - | tig0035450:23982-24001 | Msa1454840:intron | 40.0% | |
| TATGCTGTTGCCATTGCTTT+AGG | - | tig0035450:24101-24120 | Msa1454840:intron | 40.0% | |
| !! | TTGCTATTAGGATGGACTGT+GGG | - | tig0035450:24146-24165 | Msa1454840:intron | 40.0% |
| ! | TTTTCTCGAAGTGTGCAGTT+TGG | + | tig0035450:24424-24443 | None:intergenic | 40.0% |
| GCTCGATTCATTGCAGAAAG+CGG | + | tig0035450:21708-21727 | None:intergenic | 45.0% | |
| AATAGGTGGAACAGGGAAGA+TGG | - | tig0035450:22420-22439 | Msa1454840:CDS | 45.0% | |
| TGCTAATCGATGCTTTGTGC+AGG | - | tig0035450:22812-22831 | Msa1454840:CDS | 45.0% | |
| TGCAAAAAGAGCTCCCAAGT+TGG | - | tig0035450:22839-22858 | Msa1454840:CDS | 45.0% | |
| ! | GATTCATCTGCTGTATTGGC+AGG | + | tig0035450:22912-22931 | None:intergenic | 45.0% |
| GTTAAGTGCATTGGAGGAAG+AGG | - | tig0035450:23061-23080 | Msa1454840:CDS | 45.0% | |
| GCCATCACATCCATTAGTTC+AGG | + | tig0035450:23146-23165 | None:intergenic | 45.0% | |
| GGATTGAAAGTGATAAGGCC+GGG | - | tig0035450:23255-23274 | Msa1454840:CDS | 45.0% | |
| ! | AGATGCTTCTTCTTTGGAGG+AGG | + | tig0035450:23365-23384 | None:intergenic | 45.0% |
| GGTTGAACTGGGAAAACTTC+TGG | + | tig0035450:23435-23454 | None:intergenic | 45.0% | |
| TGTGTATGAGCGGTTGAACT+GGG | + | tig0035450:23446-23465 | None:intergenic | 45.0% | |
| AGTTCAACCGCTCATACACA+GGG | - | tig0035450:23446-23465 | Msa1454840:intron | 45.0% | |
| CTTGACATCCTCATGTACGA+GGG | + | tig0035450:23715-23734 | None:intergenic | 45.0% | |
| GCAGAGTCAACAGATTTCTG+AGG | - | tig0035450:23734-23753 | Msa1454840:intron | 45.0% | |
| CTACGTTCATACGACATCCA+TGG | + | tig0035450:24002-24021 | None:intergenic | 45.0% | |
| AGCAGACATATTCCAATGGC+AGG | - | tig0035450:24039-24058 | Msa1454840:intron | 45.0% | |
| GCAGACATATTCCAATGGCA+GGG | - | tig0035450:24040-24059 | Msa1454840:intron | 45.0% | |
| CAGACATATTCCAATGGCAG+GGG | - | tig0035450:24041-24060 | Msa1454840:intron | 45.0% | |
| !! | GGATTAAGTCTTGTTGGAGC+AGG | - | tig0035450:24122-24141 | Msa1454840:intron | 45.0% |
| !! | CTTGCTATTAGGATGGACTG+TGG | - | tig0035450:24145-24164 | Msa1454840:intron | 45.0% |
| !! | TATTAGGATGGACTGTGGGT+TGG | - | tig0035450:24150-24169 | Msa1454840:intron | 45.0% |
| !!! | ATGTTTTTATTTTTATAATT+AGG | - | tig0035450:22124-22143 | Msa1454840:CDS | 5.0% |
| !!! | TGTTTTTATTTTTATAATTA+GGG | - | tig0035450:22125-22144 | Msa1454840:CDS | 5.0% |
| GATTGGCGACAAGCCAACTT+GGG | + | tig0035450:22855-22874 | None:intergenic | 50.0% | |
| AGATTGGCGACAAGCCAACT+TGG | + | tig0035450:22856-22875 | None:intergenic | 50.0% | |
| GTCATCCATCATCTGACCCT+AGG | - | tig0035450:22982-23001 | Msa1454840:CDS | 50.0% | |
| ATCCATCATCTGACCCTAGG+TGG | - | tig0035450:22985-23004 | Msa1454840:CDS | 50.0% | |
| GCCCAGAACCAGACTATTCT+TGG | - | tig0035450:23234-23253 | Msa1454840:CDS | 50.0% | |
| CTGTGTATGAGCGGTTGAAC+TGG | + | tig0035450:23447-23466 | None:intergenic | 50.0% | |
| CAGTTCAACCGCTCATACAC+AGG | - | tig0035450:23445-23464 | Msa1454840:intron | 50.0% | |
| AGGGGCTTTCTGCCAATGAA+GGG | - | tig0035450:23501-23520 | Msa1454840:intron | 50.0% | |
| CACTCAAACCCTCGTACATG+AGG | - | tig0035450:23704-23723 | Msa1454840:intron | 50.0% | |
| GCTTGACATCCTCATGTACG+AGG | + | tig0035450:23716-23735 | None:intergenic | 50.0% | |
| GTCACTCTCAAACACGTGCA+AGG | - | tig0035450:23793-23812 | Msa1454840:intron | 50.0% | |
| GACATCCATGGAAGATCCAC+TGG | + | tig0035450:23990-24009 | None:intergenic | 50.0% | |
| TTCTCTTTCACCCCTGCCAT+TGG | + | tig0035450:24054-24073 | None:intergenic | 50.0% | |
| AATGGCAGGGGTGAAAGAGA+AGG | - | tig0035450:24053-24072 | Msa1454840:intron | 50.0% | |
| !! | GTTGGAGCAGGCTTGCTATT+AGG | - | tig0035450:24134-24153 | Msa1454840:intron | 50.0% |
| !! | GAGCAGGCTTGCTATTAGGA+TGG | - | tig0035450:24138-24157 | Msa1454840:intron | 50.0% |
| CAGCAGAAGTGAGGACTCTG+TGG | - | tig0035450:22781-22800 | Msa1454840:CDS | 55.0% | |
| CACCACCTAGGGTCAGATGA+TGG | + | tig0035450:22990-23009 | None:intergenic | 55.0% | |
| CATCATCTGACCCTAGGTGG+TGG | - | tig0035450:22988-23007 | Msa1454840:CDS | 55.0% | |
| GTGAGTGCAACCACCACCTA+GGG | + | tig0035450:23001-23020 | None:intergenic | 55.0% | |
| TGTGAGTGCAACCACCACCT+AGG | + | tig0035450:23002-23021 | None:intergenic | 55.0% | |
| TTGCTTGGAGGTTACCGAGC+AGG | + | tig0035450:23201-23220 | None:intergenic | 55.0% | |
| AAAGTGATAAGGCCGGGCCA+TGG | - | tig0035450:23261-23280 | Msa1454840:CDS | 55.0% | |
| CAGGGGCTTTCTGCCAATGA+AGG | - | tig0035450:23500-23519 | Msa1454840:intron | 55.0% | |
| AACACGTGCAAGGCAAGCAG+AGG | - | tig0035450:23803-23822 | Msa1454840:intron | 55.0% | |
| !! | TGATGGCGGCAGCAGAAGTG+AGG | - | tig0035450:22772-22791 | Msa1454840:CDS | 60.0% |
| CTGTCTGTTGTCCGCCACCA+TGG | + | tig0035450:23281-23300 | None:intergenic | 60.0% | |
| GTGATAAGGCCGGGCCATGG+TGG | - | tig0035450:23264-23283 | Msa1454840:CDS | 65.0% | |
| ATAAGGCCGGGCCATGGTGG+CGG | - | tig0035450:23267-23286 | Msa1454840:CDS | 65.0% | |
| TGTTGTCCGCCACCATGGCC+CGG | + | tig0035450:23276-23295 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035450 | gene | 21655 | 24477 | 21655 | ID=Msa1454840;Name=Msa1454840 |
| tig0035450 | mRNA | 21655 | 24477 | 21655 | ID=Msa1454840-mRNA-1;Parent=Msa1454840;Name=Msa1454840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=208|1|1|1|0.5|0.33|3|287|429 |
| tig0035450 | exon | 21655 | 22449 | 21655 | ID=Msa1454840-mRNA-1:exon:19946;Parent=Msa1454840-mRNA-1 |
| tig0035450 | exon | 22577 | 23380 | 22577 | ID=Msa1454840-mRNA-1:exon:19945;Parent=Msa1454840-mRNA-1 |
| tig0035450 | exon | 24292 | 24477 | 24292 | ID=Msa1454840-mRNA-1:exon:19944;Parent=Msa1454840-mRNA-1 |
| tig0035450 | five_prime_UTR | 24292 | 24477 | 24292 | ID=Msa1454840-mRNA-1:five_prime_utr;Parent=Msa1454840-mRNA-1 |
| tig0035450 | five_prime_UTR | 23359 | 23380 | 23359 | ID=Msa1454840-mRNA-1:five_prime_utr;Parent=Msa1454840-mRNA-1 |
| tig0035450 | CDS | 22577 | 23358 | 22577 | ID=Msa1454840-mRNA-1:cds;Parent=Msa1454840-mRNA-1 |
| tig0035450 | CDS | 21942 | 22449 | 21942 | ID=Msa1454840-mRNA-1:cds;Parent=Msa1454840-mRNA-1 |
| tig0035450 | three_prime_UTR | 21655 | 21941 | 21655 | ID=Msa1454840-mRNA-1:three_prime_utr;Parent=Msa1454840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
